BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035275
(69 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+SG D W +RSG+ V ++ + +++ +++ P F +GS + + + DL
Sbjct: 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGSSELSFWIPD 58
M +++ SGDG+ W V SG+ + S+ + + P FV+G + + D
Sbjct: 167 MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 59 L 59
+
Sbjct: 227 M 227
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIP 57
++S S DG W SG+ + + + D PPV +K++P ++ T ++L W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNDLKLW-- 222
Query: 58 DLSK---LGAYVGRK 69
D SK L Y G K
Sbjct: 223 DYSKGKCLKTYTGHK 237
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
++S S D ++ W V SGK + + + P S + V+GS + S I D+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMS 28
+ ++GS D S+ W V +G+ VA+W S
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKS 114
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+SG+ D S W VR G ++ +++ I + P F TGS + + + DL
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+SG+ D S W VR G ++ +++ I + P F TGS + + + DL
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+SG+ D S W VR G ++ +++ I + P F TGS + + + DL
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+SG+ D S W VR G ++ +++ I + P F TGS + + + DL
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+SG+ D S W VR G ++ +++ I + P F TGS + + + DL
Sbjct: 211 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 266
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIP 57
++S S DG W SG+ + + + D PPV +K++P ++ T + L W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 222
Query: 58 DLSK---LGAYVGRK 69
D SK L Y G K
Sbjct: 223 DYSKGKCLKTYTGHK 237
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
++S S D ++ W V SGK + + + P S + V+GS + S I D+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDT 31
FVI+ S DG+V W +++G+ + + ++ ++
Sbjct: 374 FVITSSDDGTVKLWDLKTGEFIRNLVTLES 403
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Query: 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPP------VIKWTPGSL---MFVTGSSELS 53
+I+GSGD + W V +G+ ++ F +E P V+ + SL MF++GS + +
Sbjct: 173 LITGSGDQTCVLWDVTTGQRIS---IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT 229
Query: 54 FWIPDL 59
+ DL
Sbjct: 230 VRLWDL 235
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 50
++SGSGD +V W +R+G + + +S + + +PG ++ S
Sbjct: 180 LVSGSGDRTVRIWDLRTG-QCSLTLSIEDGVTTVAVSPGDGKYIAAGS 226
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASW 26
++S GD ++AW ++GK ++++
Sbjct: 254 LLLSAGGDDKIFAWDWKTGKNLSTF 278
>pdb|3G3O|A Chain A, Crystal Structure Of The Cytoplasmic Tunnel Domain In
Yeast Vtc2p
Length = 392
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 16 SVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE----------LSFWIPDL 59
+V+ K+ W++ T ++K P +FV G + L FW+PDL
Sbjct: 333 NVKLPKKHGQWLNDLTNSHLVKEIPKFSIFVQGVASLYGDDEKLDILPFWLPDL 386
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 225 SKGKCLKTYTGHK 237
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 225 SKGKCLKTYTGHK 237
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 225 SKGKCLKTYTGHK 237
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 180 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 238
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 239 SKGKCLKTYTGHK 251
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 159 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 217
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 218 SKGKCLKTYTGHK 230
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 222 SKGKCLKTYTGHK 234
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 185 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 244 SKGKCLKTYTGHK 256
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 222 SKGKCLKTYTGHK 234
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 164 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 222
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 223 SKGKCLKTYTGHK 235
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 162 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 220
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 221 SKGKCLKTYTGHK 233
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 187 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 246 SKGKCLKTYTGHK 258
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 228 SKGKCLKTYTGHK 240
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 228 SKGKCLKTYTGHK 240
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 228 SKGKCLKTYTGHK 240
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPDL 59
++S S DG W SG+ + + + D PPV +K++P + + + + + D
Sbjct: 168 LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 226
Query: 60 SK---LGAYVGRK 69
SK L Y G K
Sbjct: 227 SKGKCLKTYTGHK 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,428,689
Number of Sequences: 62578
Number of extensions: 84088
Number of successful extensions: 378
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 102
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)