BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035275
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GL39|WDR82_XENTR WD repeat-containing protein 82 OS=Xenopus tropicalis GN=wdr82 PE=2
SV=1
Length = 313
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIP 57
F++ GS DG ++ W+ SG +VA T P +++ P + F + S ++FW+P
Sbjct: 252 QFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFTSACSNMAFWLP 309
>sp|Q58E77|WD82B_XENLA WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2
SV=1
Length = 313
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIP 57
F++ GS DG ++ W+ SG +VA T P +++ P + F + S ++FW+P
Sbjct: 252 QFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
>sp|Q640J6|WD82A_XENLA WD repeat-containing protein 82-A OS=Xenopus laevis GN=wdr82-a PE=2
SV=1
Length = 313
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIP 57
F++ GS DG ++ W+ SG +VA T P +++ P + F + S ++FW+P
Sbjct: 252 QFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
>sp|Q6NV31|WDR82_DANRE WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1
Length = 313
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIP 57
F++ GS DG ++ W+ SG +VA T P +++ P + F + S ++FW+P
Sbjct: 252 QFIMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFASACSNMAFWLP 309
>sp|Q5ZMV7|WDR82_CHICK WD repeat-containing protein 82 OS=Gallus gallus GN=WDR82 PE=2 SV=1
Length = 313
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIP 57
F++ GS DG ++ W+ SG +VA T P +++ P + F + S ++FW+P
Sbjct: 252 QFIMIGSEDGKIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
>sp|Q8BFQ4|WDR82_MOUSE WD repeat-containing protein 82 OS=Mus musculus GN=Wdr82 PE=1 SV=1
Length = 313
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIP 57
F++ GS DG ++ W+ SG +VA T P +++ P + F + S ++FW+P
Sbjct: 252 QFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
>sp|Q6UXN9|WDR82_HUMAN WD repeat-containing protein 82 OS=Homo sapiens GN=WDR82 PE=1 SV=1
Length = 313
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIP 57
F++ GS DG ++ W+ SG +VA T P +++ P + F + S ++FW+P
Sbjct: 252 QFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLP 309
>sp|Q5ZMC3|WSDU1_CHICK WD repeat, SAM and U-box domain-containing protein 1 OS=Gallus
gallus GN=WDSUB1 PE=2 SV=2
Length = 476
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFW 55
+++SG+ DGSV W+V S K S D ++PG FVTGSS +L+ W
Sbjct: 111 YLVSGAADGSVVLWNVHSMKFYRSGNVKDGSLVACAFSPGGNFFVTGSSCGDLTVW 166
>sp|P36408|GBB_DICDI Guanine nucleotide-binding protein subunit beta OS=Dictyostelium
discoideum GN=gpbA PE=1 SV=1
Length = 347
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+ ISG+ D + W +RSGK V ++ + + +++ P L F TGS + S + D+
Sbjct: 205 YFISGACDATAKLWDLRSGKCVQTFTGHEADINAVQYFPNGLSFGTGSDDASCRLFDI 262
>sp|O14435|GBB_CRYPA Guanine nucleotide-binding protein subunit beta OS=Cryphonectria
parasitica GN=GB-1 PE=3 SV=1
Length = 359
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
ISG+ D W +R+GK V ++ +++ I++ P FVTGS + + + D+
Sbjct: 218 ISGACDAFAKLWDIRAGKAVQTFAGHESDINAIQFFPDGHSFVTGSDDATCRLFDI 273
>sp|A7RM20|EIF3I_NEMVE Eukaryotic translation initiation factor 3 subunit I
OS=Nematostella vectensis GN=v1g239264 PE=3 SV=1
Length = 321
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60
F+++G +G + W V+SG ++ S + I+ S MFVT S + + + D
Sbjct: 155 QFLVTGHENGELCQWDVKSGNKLISVQEHSKQINDIQMYKDSTMFVTASKDTTAKLFDTD 214
Query: 61 KL 62
L
Sbjct: 215 SL 216
>sp|Q8CGF6|WDR47_MOUSE WD repeat-containing protein 47 OS=Mus musculus GN=Wdr47 PE=1 SV=2
Length = 920
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 5 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+G D S + +R G+ V S+ ++ ++++PG+ +TGS ++ + DL
Sbjct: 818 TGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDL 872
>sp|O94967|WDR47_HUMAN WD repeat-containing protein 47 OS=Homo sapiens GN=WDR47 PE=1 SV=1
Length = 919
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 5 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+G D S + +R G+ V S+ ++ ++++PG+ +TGS ++ + DL
Sbjct: 817 TGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDL 871
>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1
Length = 1526
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 5 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60
SGS D +V W + SG+ + ++ + + ++P SLM +GSS+ + + D+S
Sbjct: 923 SGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDIS 978
>sp|A0AUS0|WSDU1_DANRE WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio
GN=wdsub1 PE=2 SV=1
Length = 487
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDL 59
++SG DGS+ W S + + DT +TP MF+TGS+ +L W ++
Sbjct: 111 HLVSGGSDGSIALWDFTSRTLRRTGVVNDTSIVACSFTPCGQMFITGSTYGDLRLWDLNM 170
Query: 60 SKLGA 64
+ L A
Sbjct: 171 NHLHA 175
>sp|Q8SQS4|TAF5_ENCCU Transcription initiation factor TFIID subunit 5 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=TAF5 PE=1 SV=1
Length = 556
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60
F SG+GD WSV + K +S ++ +K+ P S TGSS+ + D+S
Sbjct: 378 FFASGAGDRQAIVWSVMTSKPERLIISSLSDVTAVKFHPNSSYLFTGSSDHRVRMHDIS 436
>sp|Q5RAC9|A16L1_PONAB Autophagy-related protein 16-1 OS=Pongo abelii GN=ATG16L1 PE=2 SV=1
Length = 607
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVT 47
+V +GS +GS+Y WSV +GK E + + W+P L V+
Sbjct: 548 YVAAGSAEGSLYTWSVLTGKVEKVLSKQHSSSINAVAWSPSGLHVVS 594
>sp|Q8N157|AHI1_HUMAN Jouberin OS=Homo sapiens GN=AHI1 PE=1 SV=1
Length = 1196
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV 35
F+ +GS DG VY W+ +G++VA + + P+
Sbjct: 857 FLFAGSEDGIVYVWNPETGEQVAMYSDLPFKSPI 890
>sp|Q8C0J2|A16L1_MOUSE Autophagy-related protein 16-1 OS=Mus musculus GN=Atg16l1 PE=1 SV=1
Length = 607
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVT 47
+V +GS +GS+Y WSV +GK E + + W P L V+
Sbjct: 548 YVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVS 594
>sp|P0CS47|PFS2_CRYNB Polyadenylation factor subunit 2 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=PFS2 PE=3 SV=1
Length = 713
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSEL--SFWIP-- 57
FV G DG V WS R KE S + + W P + V+GS ++ FW P
Sbjct: 231 FVTCGD-DGLVKIWSYREAKEERSLSGHGWDVRCVDWHPTKGLIVSGSKDMLVKFWDPRT 289
Query: 58 --DLSKL 62
DLS L
Sbjct: 290 GKDLSTL 296
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 51
++SGS D V W R+GK++++ S + +W+P + T +
Sbjct: 272 LIVSGSKDMLVKFWDPRTGKDLSTLHSSKSTINTCRWSPDGHLVATAGQD 321
>sp|P0CS46|PFS2_CRYNJ Polyadenylation factor subunit 2 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=PFS2 PE=3 SV=1
Length = 712
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSEL--SFWIP-- 57
FV G DG V WS R KE S + + W P + V+GS ++ FW P
Sbjct: 231 FVTCGD-DGLVKIWSYREAKEERSLSGHGWDVRCVDWHPTKGLIVSGSKDMLVKFWDPRT 289
Query: 58 --DLSKL 62
DLS L
Sbjct: 290 GKDLSTL 296
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 51
++SGS D V W R+GK++++ S + +W+P + T +
Sbjct: 272 LIVSGSKDMLVKFWDPRTGKDLSTLHSSKSTINTCRWSPDGHLVATAGQD 321
>sp|Q6CIH3|ERB1_KLULA Ribosome biogenesis protein ERB1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=ERB1 PE=3 SV=1
Length = 791
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP------PVIKWTPGS---LMFVTGSSE 51
+++ +GS DG+V W + +G+EV + E V++W P S ++ VT
Sbjct: 439 LWLATGSDDGTVRVWEILTGREVYQVTILNAEENNDDHIDVVEWNPDSTTGILAVTAGEN 498
Query: 52 LSFWIPDL 59
+ +P +
Sbjct: 499 IFLLVPPI 506
>sp|Q20636|GBB2_CAEEL Guanine nucleotide-binding protein subunit beta-2 OS=Caenorhabditis
elegans GN=gpb-2 PE=1 SV=2
Length = 356
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
IS D W +RSG+ V S+ + + +++ P F TGS + + + DL
Sbjct: 216 ISAGADKHSLVWDIRSGQCVQSFEGHEADINTVRFHPNGDAFATGSDDATCRLFDL 271
>sp|P62881|GBB5_MOUSE Guanine nucleotide-binding protein subunit beta-5 OS=Mus musculus
GN=Gnb5 PE=1 SV=1
Length = 395
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+SG D W +RSG+ V ++ + +++ +++ P F +GS + + + DL
Sbjct: 255 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 310
>sp|Q4PHV3|IPI3_USTMA Pre-rRNA-processing protein IPI3 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=IPI3 PE=3 SV=1
Length = 587
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61
V GS DG + W + +G +AS+ + V+KWT +TGS + + L+
Sbjct: 117 LVAGGSFDGRILLWQIATGDLLASFDAHYRSVTVLKWTCDGAGLLTGSEDARILVWSLAG 176
Query: 62 LGA 64
L A
Sbjct: 177 LLA 179
>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio
GN=katnb1 PE=2 SV=1
Length = 694
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 5 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 63
S S D +V W + +GK + + S + V+++ P + +GS++ + + DL K
Sbjct: 164 SASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDLEKFN 222
>sp|Q5JTN6|WDR38_HUMAN WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2
SV=1
Length = 314
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIPD 58
+++GS DG VY W RSG+ + W PV +++P +F + S + + + D
Sbjct: 34 QMLLTGSEDGCVYGWETRSGQLL--WRLGGHTGPVKFCRFSPDGHLFASASCDCTVRLWD 91
Query: 59 LSK 61
+++
Sbjct: 92 VAR 94
>sp|Q65730|POLG_BSTV1 Genome polyprotein OS=Brome streak virus (strain 11-Cal) PE=3 SV=1
Length = 3093
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 34 PVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYV 66
P+I+ TPG LMF GS++ IPD++ YV
Sbjct: 662 PIIRPTPGHLMF--GSTDRLLRIPDMTNARHYV 692
>sp|O14775|GBB5_HUMAN Guanine nucleotide-binding protein subunit beta-5 OS=Homo sapiens
GN=GNB5 PE=1 SV=2
Length = 395
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+SG D W +RSG+ V ++ + +++ +++ P F +GS + + + DL
Sbjct: 255 VSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDL 310
>sp|Q2HDW0|ERB1_CHAGB Ribosome biogenesis protein ERB1 OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=ERB1 PE=3 SV=1
Length = 782
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 5 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSS 50
+G DG+V W + +G++V S + ++E PV ++W P FV ++
Sbjct: 452 TGGDDGTVRVWELLTGRQVWS-VKLNSEEPVNAVRWRPTKDAFVLAAA 498
>sp|Q229Z6|POC1_TETTS POC1 centriolar protein homolog OS=Tetrahymena thermophila (strain
SB210) GN=TTHERM_01308010 PE=3 SV=1
Length = 634
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 51
F+ S D + W +R G+++ + S D + +++ F TG S+
Sbjct: 286 FLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQ 335
>sp|Q7ZY78|WDR4_XENLA tRNA (guanine-N(7)-)-methyltransferase subunit WDR4 OS=Xenopus
laevis GN=wdr4 PE=2 SV=2
Length = 396
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVAS 25
++SGSGDG++ W SGKEV S
Sbjct: 197 LLLSGSGDGTLRLWEYESGKEVHS 220
>sp|Q8N9V3|WSDU1_HUMAN WD repeat, SAM and U-box domain-containing protein 1 OS=Homo
sapiens GN=WDSUB1 PE=1 SV=3
Length = 476
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 5 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFW 55
SG+ DG+V W+ +S K D ++P FVTGSS +L+ W
Sbjct: 114 SGAADGTVVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGSSCGDLTVW 166
>sp|P62882|GBB5_RAT Guanine nucleotide-binding protein subunit beta-5 OS=Rattus
norvegicus GN=Gnb5 PE=2 SV=1
Length = 353
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+SG D W +RSG+ V ++ + +++ +++ P F +GS + + + DL
Sbjct: 213 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 268
>sp|Q6PNB6|GBB5_RABIT Guanine nucleotide-binding protein subunit beta-5 OS=Oryctolagus
cuniculus GN=GNB5 PE=2 SV=1
Length = 353
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+SG D W +RSG+ V ++ + +++ +++ P F +GS + + + DL
Sbjct: 213 VSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDL 268
>sp|Q80ZD0|GBB5_TAMST Guanine nucleotide-binding protein subunit beta-5 OS=Tamias
striatus GN=GNB5 PE=2 SV=1
Length = 353
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+SG D W +RSG+ V ++ + +++ +++ P F +GS + + + DL
Sbjct: 213 VSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDL 268
>sp|Q5RDY7|GBB5_PONAB Guanine nucleotide-binding protein subunit beta-5 OS=Pongo abelii
GN=GNB5 PE=2 SV=1
Length = 353
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59
+SG D W +RSG+ V ++ + +++ +++ P F +GS + + + DL
Sbjct: 213 VSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDL 268
>sp|Q54R82|MKKA_DICDI Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium
discoideum GN=mkkA PE=1 SV=2
Length = 942
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT 39
V++GS DG++ W + +GK +++++ +T WT
Sbjct: 843 VVTGSCDGTIKLWDIGTGKTISTFIPSETRQKNYVWT 879
>sp|Q8VEJ4|NLE1_MOUSE Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=4
Length = 485
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL 59
V S S D S+ W R+GK +AS I W+ S + V+GSS+ L W
Sbjct: 386 IVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKA 445
Query: 60 SKLG 63
KL
Sbjct: 446 QKLA 449
>sp|Q5RFF8|NLE1_PONAB Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3
Length = 485
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL 59
V S S D S+ W R+GK +AS I W+ S + V+GSS+ L W
Sbjct: 386 IVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKA 445
Query: 60 SKLG 63
KL
Sbjct: 446 QKLA 449
>sp|Q9NVX2|NLE1_HUMAN Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=4
Length = 485
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL 59
V S S D S+ W R+GK +AS I W+ S + V+GSS+ L W
Sbjct: 386 IVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKA 445
Query: 60 SKLG 63
KL
Sbjct: 446 QKLA 449
>sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus
purpuratus GN=KATNB1 PE=1 SV=1
Length = 690
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60
FV SGS D +V W VR + ++ + +IK++P VT S + + + DL+
Sbjct: 115 FVASGSTDTNVKLWDVRRKGCIYTYKGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLT 173
>sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog
OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3
Length = 837
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW 55
V+SG D V W + +GK + + S + + + + P + TGS++ + FW
Sbjct: 158 VVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFW 212
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1
Length = 1258
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 5 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 51
SGSGD ++ W+ +G+ + +++ I ++P S + V+GS +
Sbjct: 827 SGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGD 873
>sp|Q676U5|A16L1_HUMAN Autophagy-related protein 16-1 OS=Homo sapiens GN=ATG16L1 PE=1 SV=2
Length = 607
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTP 40
+V +GS +GS+Y WSV +GK E + + W+P
Sbjct: 548 YVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSP 587
>sp|Q5FVB6|WDR4_XENTR tRNA (guanine-N(7)-)-methyltransferase subunit WDR4 OS=Xenopus
tropicalis GN=wdr4 PE=2 SV=2
Length = 396
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVAS 25
++SGSGDG++ W SG+EV S
Sbjct: 197 LLLSGSGDGTLRLWDYESGREVQS 220
>sp|O08653|TEP1_RAT Telomerase protein component 1 OS=Rattus norvegicus GN=Tep1 PE=1 SV=1
Length = 2629
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 51
++SG+ DGS++ W +R + W+S + PV+ S F+ +SE
Sbjct: 1994 LVSGAEDGSLHGWMLRRNSLQSLWLSSVCQKPVLGLA-ASQEFLASASE 2041
>sp|O54929|WSB2_MOUSE WD repeat and SOCS box-containing protein 2 OS=Mus musculus GN=Wsb2
PE=2 SV=2
Length = 404
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGSSELSFWIPDL 59
+ + +G DG + W V++G + + + +TP GSL+ V+ S + + I DL
Sbjct: 124 LILATGLNDGQIKIWEVQTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDL 183
Query: 60 SKLGAYV 66
+K G +
Sbjct: 184 NKHGKQI 190
>sp|Q5E959|STRAP_BOVIN Serine-threonine kinase receptor-associated protein OS=Bos taurus
GN=STRAP PE=2 SV=1
Length = 350
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW 55
FV++G D +Y + SG+E+ S+ ++++P ++ +GS + L W
Sbjct: 237 FVVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLW 292
>sp|Q58D20|NLE1_BOVIN Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=3
Length = 486
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS 60
+ S S D S+ W R+GK +AS I W+ S + V+GSS+ L W
Sbjct: 388 IASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQ 447
Query: 61 KL 62
KL
Sbjct: 448 KL 449
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,027,892
Number of Sequences: 539616
Number of extensions: 950242
Number of successful extensions: 3936
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 3715
Number of HSP's gapped (non-prelim): 295
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)