Query 035275
Match_columns 69
No_of_seqs 101 out of 1385
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 10:35:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1446 Histone H3 (Lys4) meth 99.4 2.6E-12 5.6E-17 71.4 7.3 63 1-63 245-308 (311)
2 KOG0293 WD40 repeat-containing 99.4 7.5E-13 1.6E-17 76.2 5.3 58 1-58 453-513 (519)
3 KOG0263 Transcription initiati 99.4 9.1E-13 2E-17 79.4 5.8 60 1-60 548-607 (707)
4 KOG0279 G protein beta subunit 99.3 9.8E-12 2.1E-16 68.7 6.7 59 1-59 76-134 (315)
5 KOG0295 WD40 repeat-containing 99.3 2E-11 4.3E-16 69.3 7.0 62 1-64 305-368 (406)
6 KOG0271 Notchless-like WD40 re 99.3 1.3E-11 2.8E-16 70.7 5.6 57 2-58 129-187 (480)
7 KOG0266 WD40 repeat-containing 99.3 4.2E-11 9E-16 70.3 7.7 57 1-57 259-317 (456)
8 KOG0279 G protein beta subunit 99.3 1.6E-11 3.5E-16 67.8 5.6 60 2-61 164-223 (315)
9 KOG0289 mRNA splicing factor [ 99.3 1.5E-11 3.2E-16 71.2 5.5 65 2-66 361-425 (506)
10 PTZ00421 coronin; Provisional 99.3 5.5E-11 1.2E-15 70.5 8.0 59 2-60 140-198 (493)
11 KOG0263 Transcription initiati 99.2 2.1E-11 4.6E-16 73.7 4.9 56 1-56 590-647 (707)
12 KOG0266 WD40 repeat-containing 99.2 8.3E-11 1.8E-15 69.1 7.1 57 2-58 217-276 (456)
13 KOG0286 G-protein beta subunit 99.2 1E-10 2.2E-15 65.1 6.5 61 1-61 200-260 (343)
14 KOG0278 Serine/threonine kinas 99.2 1.2E-10 2.5E-15 64.1 6.4 59 2-60 238-299 (334)
15 KOG0272 U4/U6 small nuclear ri 99.2 2.8E-11 6.1E-16 69.7 3.5 62 2-63 233-294 (459)
16 KOG0264 Nucleosome remodeling 99.2 9.4E-11 2E-15 67.6 5.5 63 2-64 242-307 (422)
17 KOG0315 G-protein beta subunit 99.2 1.2E-10 2.6E-15 63.9 5.2 59 1-60 96-154 (311)
18 KOG0272 U4/U6 small nuclear ri 99.2 1.1E-10 2.3E-15 67.4 5.2 59 2-60 317-377 (459)
19 KOG0322 G-protein beta subunit 99.1 6.2E-11 1.4E-15 65.4 3.9 59 1-59 264-322 (323)
20 KOG1273 WD40 repeat protein [G 99.1 1.1E-10 2.3E-15 65.8 4.6 59 2-60 37-95 (405)
21 KOG0271 Notchless-like WD40 re 99.1 2E-10 4.4E-15 66.0 5.7 57 1-57 422-478 (480)
22 KOG0292 Vesicle coat complex C 99.1 3.1E-10 6.6E-15 70.5 6.6 59 2-62 107-167 (1202)
23 KOG0319 WD40-repeat-containing 99.1 3.3E-10 7.1E-15 68.8 6.3 56 1-56 476-533 (775)
24 KOG0273 Beta-transducin family 99.1 7.7E-10 1.7E-14 64.7 7.3 59 2-60 424-482 (524)
25 KOG0286 G-protein beta subunit 99.1 6.6E-10 1.4E-14 62.0 6.5 60 2-61 158-218 (343)
26 KOG0302 Ribosome Assembly prot 99.1 4.7E-10 1E-14 64.3 6.0 62 2-63 272-335 (440)
27 PTZ00421 coronin; Provisional 99.1 1.6E-09 3.5E-14 64.4 7.4 57 2-58 90-156 (493)
28 KOG0284 Polyadenylation factor 99.1 1.9E-10 4.1E-15 66.3 3.4 63 2-64 236-298 (464)
29 KOG0302 Ribosome Assembly prot 99.0 1.2E-09 2.6E-14 62.7 6.4 59 2-60 316-380 (440)
30 PLN00181 protein SPA1-RELATED; 99.0 2.2E-09 4.7E-14 66.5 8.0 56 2-57 547-605 (793)
31 KOG0291 WD40-repeat-containing 99.0 1.8E-09 4E-14 66.1 6.9 61 1-61 363-423 (893)
32 KOG0645 WD40 repeat protein [G 99.0 2.8E-09 6.1E-14 59.0 7.1 60 1-60 74-135 (312)
33 KOG0285 Pleiotropic regulator 99.0 1.4E-09 3E-14 62.3 6.0 59 1-59 164-224 (460)
34 KOG0316 Conserved WD40 repeat- 99.0 1E-09 2.2E-14 60.0 5.0 55 2-56 73-129 (307)
35 KOG0284 Polyadenylation factor 99.0 1.4E-09 3.1E-14 62.8 5.7 62 2-63 194-255 (464)
36 KOG0264 Nucleosome remodeling 99.0 1.5E-09 3.2E-14 62.8 5.7 62 2-63 287-350 (422)
37 KOG0277 Peroxisomal targeting 99.0 2.8E-09 6.1E-14 58.7 6.5 57 2-58 119-178 (311)
38 KOG1034 Transcriptional repres 99.0 6.2E-09 1.3E-13 59.0 7.1 58 1-58 149-211 (385)
39 KOG0277 Peroxisomal targeting 99.0 4.9E-09 1.1E-13 57.8 6.4 64 1-64 161-225 (311)
40 KOG0282 mRNA splicing factor [ 99.0 6.5E-10 1.4E-14 65.0 3.1 60 2-61 229-289 (503)
41 KOG0643 Translation initiation 98.9 2.6E-09 5.6E-14 59.2 5.1 64 1-64 160-224 (327)
42 PTZ00420 coronin; Provisional 98.9 9.2E-09 2E-13 62.1 7.7 55 3-58 141-197 (568)
43 KOG0270 WD40 repeat-containing 98.9 7.5E-09 1.6E-13 60.2 6.7 60 2-61 258-318 (463)
44 KOG0269 WD40 repeat-containing 98.9 4.1E-09 8.9E-14 64.6 5.7 60 2-61 191-253 (839)
45 KOG0318 WD40 repeat stress pro 98.9 1.5E-08 3.3E-13 60.1 7.8 60 2-61 204-268 (603)
46 PTZ00420 coronin; Provisional 98.9 1.3E-08 2.8E-13 61.5 7.6 57 2-58 89-156 (568)
47 KOG0303 Actin-binding protein 98.9 4.8E-09 1E-13 60.6 5.0 58 2-60 146-203 (472)
48 KOG0292 Vesicle coat complex C 98.9 5.6E-09 1.2E-13 65.2 5.5 60 2-61 65-126 (1202)
49 KOG1445 Tumor-specific antigen 98.9 1.8E-09 4E-14 65.6 3.4 60 2-61 692-751 (1012)
50 KOG0276 Vesicle coat complex C 98.9 1.9E-09 4.2E-14 65.1 3.3 55 2-56 199-255 (794)
51 KOG0285 Pleiotropic regulator 98.9 1.3E-08 2.9E-13 58.4 6.4 55 2-56 249-305 (460)
52 KOG0296 Angio-associated migra 98.9 1.3E-08 2.9E-13 58.1 6.3 56 2-57 340-395 (399)
53 KOG0281 Beta-TrCP (transducin 98.9 5.1E-09 1.1E-13 60.0 4.5 58 1-60 331-388 (499)
54 KOG0283 WD40 repeat-containing 98.9 1.1E-08 2.4E-13 62.6 6.1 55 1-56 381-438 (712)
55 KOG0276 Vesicle coat complex C 98.9 3.2E-08 7E-13 60.0 7.7 60 1-60 68-129 (794)
56 KOG2394 WD40 protein DMR-N9 [G 98.8 5.1E-09 1.1E-13 62.3 3.8 61 1-61 303-365 (636)
57 KOG0319 WD40-repeat-containing 98.8 1.9E-08 4.1E-13 61.4 6.0 57 1-57 518-576 (775)
58 KOG0281 Beta-TrCP (transducin 98.8 3.4E-09 7.4E-14 60.7 2.4 57 2-60 209-267 (499)
59 KOG0275 Conserved WD40 repeat- 98.8 3.1E-09 6.6E-14 60.5 2.1 57 1-57 226-292 (508)
60 KOG0318 WD40 repeat stress pro 98.8 3.3E-08 7.1E-13 58.8 6.3 56 1-56 500-558 (603)
61 KOG0274 Cdc4 and related F-box 98.8 3.4E-08 7.4E-13 59.4 6.3 56 2-58 343-400 (537)
62 PF00400 WD40: WD domain, G-be 98.8 1.3E-08 2.8E-13 40.9 3.1 35 21-55 2-38 (39)
63 KOG0268 Sof1-like rRNA process 98.8 1.7E-08 3.7E-13 57.9 4.4 64 2-66 81-145 (433)
64 KOG0294 WD40 repeat-containing 98.8 5.1E-08 1.1E-12 55.1 6.1 57 2-58 99-155 (362)
65 KOG0306 WD40-repeat-containing 98.8 2.2E-08 4.7E-13 61.6 4.9 65 1-65 563-627 (888)
66 KOG0296 Angio-associated migra 98.8 6E-08 1.3E-12 55.6 6.4 58 1-58 77-136 (399)
67 KOG0295 WD40 repeat-containing 98.8 6.6E-08 1.4E-12 55.4 6.6 55 1-55 347-403 (406)
68 KOG0291 WD40-repeat-containing 98.8 3.6E-08 7.8E-13 60.7 5.8 54 3-56 450-506 (893)
69 cd00200 WD40 WD40 domain, foun 98.7 1.7E-07 3.7E-12 50.1 7.7 56 2-57 233-288 (289)
70 KOG0306 WD40-repeat-containing 98.7 4.7E-08 1E-12 60.2 6.0 55 2-56 79-135 (888)
71 cd00200 WD40 WD40 domain, foun 98.7 1.5E-07 3.3E-12 50.3 7.5 58 1-58 22-81 (289)
72 KOG0265 U5 snRNP-specific prot 98.7 6.8E-08 1.5E-12 54.3 6.2 60 2-61 61-121 (338)
73 KOG1407 WD40 repeat protein [F 98.7 2E-08 4.4E-13 55.6 4.0 56 1-56 202-257 (313)
74 KOG0639 Transducin-like enhanc 98.7 4.6E-08 1E-12 58.3 5.6 61 2-62 523-583 (705)
75 KOG0313 Microtubule binding pr 98.7 1.2E-07 2.5E-12 54.7 7.0 55 2-57 360-415 (423)
76 KOG0315 G-protein beta subunit 98.7 1.4E-07 3.1E-12 52.1 7.0 60 1-60 228-288 (311)
77 KOG0305 Anaphase promoting com 98.7 7.1E-08 1.5E-12 57.3 5.7 58 1-58 314-376 (484)
78 KOG0265 U5 snRNP-specific prot 98.7 9.9E-08 2.2E-12 53.6 5.8 57 2-58 280-336 (338)
79 KOG0267 Microtubule severing p 98.7 6.4E-09 1.4E-13 63.5 1.1 60 2-61 84-143 (825)
80 KOG0294 WD40 repeat-containing 98.7 6.3E-08 1.4E-12 54.8 4.8 56 1-56 54-113 (362)
81 KOG0288 WD40 repeat protein Ti 98.7 1E-07 2.3E-12 55.3 5.7 55 1-55 400-458 (459)
82 KOG0269 WD40 repeat-containing 98.7 6.4E-08 1.4E-12 59.6 5.0 61 2-62 148-209 (839)
83 PLN00181 protein SPA1-RELATED; 98.7 2.5E-07 5.4E-12 57.6 7.6 56 2-57 674-737 (793)
84 KOG0313 Microtubule binding pr 98.7 3.3E-07 7.2E-12 52.9 7.4 60 1-61 116-180 (423)
85 KOG1407 WD40 repeat protein [F 98.6 2.9E-07 6.3E-12 51.1 6.5 58 6-63 165-222 (313)
86 KOG0310 Conserved WD40 repeat- 98.6 2.9E-07 6.3E-12 54.2 6.6 61 2-62 125-186 (487)
87 KOG1446 Histone H3 (Lys4) meth 98.6 3.1E-07 6.8E-12 51.6 6.4 59 2-62 114-172 (311)
88 KOG1332 Vesicle coat complex C 98.6 7.3E-07 1.6E-11 49.3 7.5 59 1-59 24-89 (299)
89 KOG4283 Transcription-coupled 98.6 4.2E-07 9.1E-12 51.4 6.7 61 2-62 160-221 (397)
90 KOG0310 Conserved WD40 repeat- 98.6 6E-07 1.3E-11 52.9 7.5 56 2-57 168-224 (487)
91 KOG0282 mRNA splicing factor [ 98.6 1.6E-07 3.5E-12 55.3 5.2 55 1-55 445-502 (503)
92 KOG0647 mRNA export protein (c 98.6 1.5E-07 3.2E-12 53.1 4.7 58 2-59 42-103 (347)
93 KOG1310 WD40 repeat protein [G 98.6 2.8E-07 6E-12 55.6 6.1 63 2-64 64-129 (758)
94 KOG0641 WD40 repeat protein [G 98.6 5.4E-07 1.2E-11 49.5 6.7 60 1-60 244-303 (350)
95 KOG0308 Conserved WD40 repeat- 98.6 3.7E-07 8E-12 55.6 6.4 59 2-60 185-243 (735)
96 KOG0647 mRNA export protein (c 98.6 8.3E-07 1.8E-11 50.1 7.3 55 2-57 86-144 (347)
97 KOG2110 Uncharacterized conser 98.6 6E-07 1.3E-11 51.6 6.6 57 9-65 152-212 (391)
98 KOG0274 Cdc4 and related F-box 98.6 3.9E-07 8.4E-12 55.0 6.2 54 3-58 304-359 (537)
99 KOG0273 Beta-transducin family 98.5 6.5E-07 1.4E-11 52.9 6.8 57 2-58 331-387 (524)
100 KOG0973 Histone transcription 98.5 3.8E-07 8.3E-12 57.4 6.0 56 1-56 142-199 (942)
101 KOG0646 WD40 repeat protein [G 98.5 1.4E-07 2.9E-12 55.4 3.6 55 2-56 95-151 (476)
102 KOG0300 WD40 repeat-containing 98.5 1.8E-07 4E-12 53.4 3.8 54 3-56 163-218 (481)
103 KOG0316 Conserved WD40 repeat- 98.5 4.2E-07 9.1E-12 50.1 5.0 61 1-61 30-90 (307)
104 KOG0300 WD40 repeat-containing 98.5 3.2E-07 7E-12 52.4 4.7 59 2-60 286-344 (481)
105 KOG1274 WD40 repeat protein [G 98.5 7.4E-07 1.6E-11 55.8 6.3 57 2-58 110-168 (933)
106 KOG0293 WD40 repeat-containing 98.5 8.4E-07 1.8E-11 52.0 6.0 60 1-60 237-299 (519)
107 KOG0645 WD40 repeat protein [G 98.5 1.5E-06 3.2E-11 48.5 6.7 55 2-56 29-89 (312)
108 KOG0307 Vesicle coat complex C 98.5 1.7E-07 3.7E-12 59.3 3.3 63 2-64 82-151 (1049)
109 KOG1036 Mitotic spindle checkp 98.4 3.8E-07 8.3E-12 51.3 4.0 49 1-49 245-293 (323)
110 KOG0299 U3 snoRNP-associated p 98.4 8.6E-07 1.9E-11 52.1 5.3 58 1-58 215-274 (479)
111 KOG2111 Uncharacterized conser 98.4 2.5E-06 5.5E-11 48.4 6.8 56 2-57 195-253 (346)
112 KOG0643 Translation initiation 98.4 2.3E-06 5E-11 47.9 6.4 57 1-57 23-81 (327)
113 KOG0278 Serine/threonine kinas 98.4 5.7E-06 1.2E-10 46.1 7.7 57 1-58 156-213 (334)
114 KOG1007 WD repeat protein TSSC 98.4 1.4E-06 3E-11 49.2 5.5 52 2-53 229-282 (370)
115 KOG0283 WD40 repeat-containing 98.4 1.1E-06 2.4E-11 54.1 5.4 56 1-57 423-480 (712)
116 KOG0305 Anaphase promoting com 98.4 2.7E-06 5.8E-11 50.8 6.7 55 6-60 407-464 (484)
117 KOG0771 Prolactin regulatory e 98.4 6E-07 1.3E-11 52.0 3.9 57 2-58 158-215 (398)
118 KOG0772 Uncharacterized conser 98.4 7.5E-07 1.6E-11 53.3 4.3 55 2-56 331-392 (641)
119 KOG0267 Microtubule severing p 98.4 2.4E-07 5.2E-12 56.9 2.0 63 1-63 167-229 (825)
120 KOG0290 Conserved WD40 repeat- 98.4 3.3E-06 7.2E-11 47.7 6.2 64 1-64 164-231 (364)
121 KOG1009 Chromatin assembly com 98.3 1.7E-06 3.7E-11 50.3 5.2 57 2-58 28-95 (434)
122 KOG0268 Sof1-like rRNA process 98.3 1.1E-06 2.4E-11 50.7 4.2 64 2-66 202-265 (433)
123 KOG1539 WD repeat protein [Gen 98.3 6.6E-06 1.4E-10 51.5 7.6 54 1-55 589-645 (910)
124 TIGR03866 PQQ_ABC_repeats PQQ- 98.3 1.1E-05 2.3E-10 44.3 7.7 55 2-57 3-60 (300)
125 KOG1408 WD40 repeat protein [F 98.3 1.2E-06 2.7E-11 54.3 4.3 55 2-56 655-711 (1080)
126 KOG1036 Mitotic spindle checkp 98.3 8.4E-06 1.8E-10 46.1 7.2 56 2-58 67-124 (323)
127 KOG0642 Cell-cycle nuclear pro 98.3 2.4E-06 5.3E-11 51.3 5.3 54 2-55 308-371 (577)
128 KOG0308 Conserved WD40 repeat- 98.3 4.9E-06 1.1E-10 51.0 6.6 60 2-61 227-286 (735)
129 KOG1445 Tumor-specific antigen 98.3 3E-06 6.4E-11 52.2 5.6 57 3-60 144-200 (1012)
130 KOG1310 WD40 repeat protein [G 98.3 4.5E-06 9.9E-11 50.6 5.9 57 2-58 638-696 (758)
131 KOG4328 WD40 protein [Function 98.3 2.5E-06 5.4E-11 50.3 4.7 55 2-56 337-397 (498)
132 KOG0303 Actin-binding protein 98.3 1.6E-06 3.4E-11 50.6 3.8 58 2-59 96-163 (472)
133 KOG2919 Guanine nucleotide-bin 98.3 2.9E-06 6.4E-11 48.5 4.8 57 1-57 310-367 (406)
134 KOG0290 Conserved WD40 repeat- 98.3 7.2E-06 1.6E-10 46.4 6.2 39 23-61 280-319 (364)
135 KOG1272 WD40-repeat-containing 98.3 1.1E-06 2.4E-11 52.0 3.1 54 3-56 266-321 (545)
136 KOG0321 WD40 repeat-containing 98.3 1.3E-06 2.9E-11 53.2 3.5 57 2-58 114-175 (720)
137 KOG1332 Vesicle coat complex C 98.2 1.8E-06 3.9E-11 47.8 3.7 58 2-59 72-135 (299)
138 KOG0288 WD40 repeat protein Ti 98.2 7E-07 1.5E-11 52.0 2.0 62 2-63 233-294 (459)
139 KOG0772 Uncharacterized conser 98.2 3.8E-06 8.2E-11 50.5 5.0 55 2-56 283-345 (641)
140 KOG4378 Nuclear protein COP1 [ 98.2 3.5E-06 7.7E-11 50.5 4.9 59 2-60 179-239 (673)
141 KOG1538 Uncharacterized conser 98.2 5.4E-06 1.2E-10 51.4 5.8 52 9-60 32-85 (1081)
142 KOG0275 Conserved WD40 repeat- 98.2 1.1E-06 2.4E-11 50.5 2.4 58 3-60 321-378 (508)
143 PF08662 eIF2A: Eukaryotic tra 98.2 3.2E-05 7E-10 41.3 7.6 61 2-64 114-185 (194)
144 KOG4283 Transcription-coupled 98.2 5.2E-06 1.1E-10 47.1 4.7 64 1-64 57-136 (397)
145 KOG0270 WD40 repeat-containing 98.2 3.6E-05 7.7E-10 45.4 7.8 61 2-62 344-408 (463)
146 KOG2096 WD40 repeat protein [G 98.1 2E-05 4.4E-10 45.2 6.5 59 1-60 200-260 (420)
147 KOG1539 WD repeat protein [Gen 98.1 1.6E-06 3.4E-11 54.1 2.3 59 3-61 549-607 (910)
148 KOG1524 WD40 repeat-containing 98.1 1.8E-05 4E-10 48.0 6.6 36 25-60 181-216 (737)
149 KOG0301 Phospholipase A2-activ 98.1 1.6E-05 3.5E-10 49.0 6.5 56 2-58 192-249 (745)
150 KOG2445 Nuclear pore complex c 98.1 2.5E-05 5.5E-10 44.5 6.7 56 1-56 26-89 (361)
151 KOG0973 Histone transcription 98.1 1.8E-05 3.8E-10 50.3 6.6 62 1-62 82-161 (942)
152 KOG1334 WD40 repeat protein [G 98.1 1.2E-06 2.6E-11 52.0 1.5 58 1-58 407-466 (559)
153 KOG0640 mRNA cleavage stimulat 98.1 2.2E-05 4.7E-10 45.0 6.1 59 1-59 229-290 (430)
154 KOG0649 WD40 repeat protein [G 98.1 2.8E-05 6.1E-10 43.3 6.2 59 3-61 129-187 (325)
155 KOG0640 mRNA cleavage stimulat 98.1 1.4E-05 3.1E-10 45.7 5.0 60 2-61 126-203 (430)
156 KOG0644 Uncharacterized conser 98.1 2.2E-06 4.7E-11 53.9 1.8 55 3-60 247-302 (1113)
157 KOG0280 Uncharacterized conser 98.1 3.1E-05 6.8E-10 43.9 6.1 62 2-63 180-244 (339)
158 KOG0641 WD40 repeat protein [G 98.0 5.8E-05 1.3E-09 41.8 6.7 55 2-56 196-259 (350)
159 KOG0974 WD-repeat protein WDR6 98.0 2.9E-05 6.3E-10 49.4 6.1 64 1-66 188-254 (967)
160 KOG0301 Phospholipase A2-activ 98.0 1.7E-05 3.8E-10 48.9 4.8 60 2-63 153-213 (745)
161 KOG1188 WD40 repeat protein [G 98.0 3.1E-05 6.7E-10 44.5 5.1 61 2-62 42-104 (376)
162 KOG0644 Uncharacterized conser 98.0 3.4E-06 7.4E-11 53.1 1.4 56 1-56 203-260 (1113)
163 KOG1007 WD repeat protein TSSC 98.0 1.8E-05 3.9E-10 44.9 4.0 55 7-61 190-246 (370)
164 PF11768 DUF3312: Protein of u 97.9 0.0001 2.2E-09 44.7 7.0 57 2-60 273-329 (545)
165 KOG2106 Uncharacterized conser 97.9 0.00015 3.3E-09 43.8 7.4 55 3-58 260-314 (626)
166 KOG0289 mRNA splicing factor [ 97.9 0.00019 4.1E-09 42.7 7.7 57 1-57 316-376 (506)
167 KOG1408 WD40 repeat protein [F 97.9 8.7E-05 1.9E-09 46.6 6.5 57 1-57 609-670 (1080)
168 KOG0650 WD40 repeat nucleolar 97.9 5.7E-05 1.2E-09 46.3 5.4 41 2-43 414-454 (733)
169 KOG4714 Nucleoporin [Nuclear s 97.9 9.1E-06 2E-10 45.4 2.0 59 2-60 194-254 (319)
170 smart00320 WD40 WD40 repeats. 97.9 0.00014 2.9E-09 27.3 5.2 36 22-57 4-39 (40)
171 PF08662 eIF2A: Eukaryotic tra 97.9 0.00016 3.5E-09 38.6 6.7 51 4-57 77-132 (194)
172 KOG1034 Transcriptional repres 97.9 3E-05 6.5E-10 44.5 4.0 60 2-61 107-167 (385)
173 KOG0646 WD40 repeat protein [G 97.9 0.00019 4E-09 42.7 7.2 61 2-63 190-250 (476)
174 KOG2096 WD40 repeat protein [G 97.8 0.00011 2.3E-09 42.4 5.7 60 1-60 241-310 (420)
175 KOG0974 WD-repeat protein WDR6 97.8 0.00013 2.8E-09 46.6 6.4 64 2-65 147-210 (967)
176 KOG1188 WD40 repeat protein [G 97.8 4.6E-05 1E-09 43.9 4.1 53 9-61 142-197 (376)
177 KOG4378 Nuclear protein COP1 [ 97.8 0.00014 2.9E-09 44.0 6.2 62 2-64 223-284 (673)
178 KOG2110 Uncharacterized conser 97.8 0.00017 3.7E-09 41.9 6.3 56 2-57 187-247 (391)
179 KOG1009 Chromatin assembly com 97.8 7.4E-05 1.6E-09 43.8 4.5 59 2-60 79-153 (434)
180 KOG2048 WD40 repeat protein [G 97.8 5.1E-05 1.1E-09 46.7 4.0 50 2-51 217-266 (691)
181 KOG4190 Uncharacterized conser 97.7 0.00013 2.8E-09 44.9 5.4 59 2-60 749-814 (1034)
182 KOG2055 WD40 repeat protein [G 97.7 0.00036 7.7E-09 41.7 7.0 63 2-64 227-292 (514)
183 KOG2919 Guanine nucleotide-bin 97.7 0.00023 4.9E-09 41.1 5.7 60 2-61 222-282 (406)
184 KOG4328 WD40 protein [Function 97.7 0.00022 4.7E-09 42.5 5.7 54 2-55 202-260 (498)
185 KOG2445 Nuclear pore complex c 97.7 0.00068 1.5E-08 38.9 7.5 62 1-62 74-149 (361)
186 TIGR03866 PQQ_ABC_repeats PQQ- 97.7 0.0013 2.8E-08 36.1 8.4 54 5-59 224-280 (300)
187 KOG0299 U3 snoRNP-associated p 97.7 0.00027 5.8E-09 42.1 5.8 63 2-64 156-236 (479)
188 KOG4227 WD40 repeat protein [G 97.6 0.00037 8E-09 41.3 5.8 55 2-56 306-385 (609)
189 KOG1063 RNA polymerase II elon 97.6 0.00022 4.8E-09 44.3 4.9 59 2-60 208-299 (764)
190 KOG2321 WD40 repeat protein [G 97.5 0.00038 8.1E-09 42.8 5.4 60 2-61 189-259 (703)
191 COG2319 FOG: WD40 repeat [Gene 97.5 0.00098 2.1E-08 37.1 6.8 54 2-55 169-226 (466)
192 KOG2106 Uncharacterized conser 97.5 0.00084 1.8E-08 40.8 6.6 28 30-57 447-474 (626)
193 PF00400 WD40: WD domain, G-be 97.5 0.00022 4.9E-09 28.1 2.9 16 1-16 24-39 (39)
194 KOG0642 Cell-cycle nuclear pro 97.5 0.00088 1.9E-08 40.8 6.4 56 2-57 358-425 (577)
195 KOG1587 Cytoplasmic dynein int 97.5 0.00029 6.3E-09 43.1 4.4 58 2-60 413-472 (555)
196 KOG1274 WD40 repeat protein [G 97.5 0.0015 3.2E-08 41.8 7.3 58 2-59 202-263 (933)
197 KOG1963 WD40 repeat protein [G 97.5 0.0018 3.9E-08 41.0 7.6 61 1-61 218-284 (792)
198 KOG2055 WD40 repeat protein [G 97.4 0.0038 8.2E-08 37.6 8.2 57 2-59 358-416 (514)
199 KOG1272 WD40-repeat-containing 97.4 0.00063 1.4E-08 40.8 5.0 55 1-56 306-360 (545)
200 KOG0639 Transducin-like enhanc 97.4 0.00015 3.2E-09 44.0 2.4 58 1-58 478-539 (705)
201 KOG1240 Protein kinase contain 97.4 0.0013 2.9E-08 43.5 6.5 56 2-57 1063-1127(1431)
202 KOG1063 RNA polymerase II elon 97.4 0.00048 1E-08 42.9 4.3 56 1-56 585-646 (764)
203 KOG2048 WD40 repeat protein [G 97.3 0.0017 3.7E-08 40.4 6.5 59 2-60 124-184 (691)
204 KOG1524 WD40 repeat-containing 97.3 0.00051 1.1E-08 42.1 4.2 40 2-42 200-239 (737)
205 KOG4547 WD40 repeat-containing 97.3 0.0026 5.5E-08 38.9 6.9 58 2-59 116-173 (541)
206 KOG0649 WD40 repeat protein [G 97.3 0.002 4.3E-08 36.2 6.0 58 1-59 23-90 (325)
207 COG2319 FOG: WD40 repeat [Gene 97.3 0.0026 5.7E-08 35.4 6.6 51 7-57 131-185 (466)
208 KOG1587 Cytoplasmic dynein int 97.3 0.0012 2.6E-08 40.6 5.4 56 2-57 257-322 (555)
209 KOG0307 Vesicle coat complex C 97.3 0.00031 6.8E-09 45.4 3.0 51 11-61 233-285 (1049)
210 KOG1517 Guanine nucleotide bin 97.3 0.0016 3.4E-08 42.7 5.9 64 2-65 1271-1340(1387)
211 KOG4547 WD40 repeat-containing 97.3 0.0024 5.2E-08 39.0 6.4 51 9-59 163-221 (541)
212 PF02239 Cytochrom_D1: Cytochr 97.2 0.0016 3.5E-08 38.1 5.3 54 1-55 49-105 (369)
213 KOG3881 Uncharacterized conser 97.2 0.0026 5.6E-08 37.5 5.9 61 1-61 260-321 (412)
214 KOG2139 WD40 repeat protein [G 97.2 0.0055 1.2E-07 36.1 6.9 59 3-63 156-231 (445)
215 KOG1538 Uncharacterized conser 97.1 0.00025 5.3E-09 44.5 1.6 56 1-58 66-122 (1081)
216 KOG1963 WD40 repeat protein [G 97.1 0.0041 8.8E-08 39.6 6.5 58 2-59 471-539 (792)
217 KOG4497 Uncharacterized conser 97.1 0.0088 1.9E-07 35.0 7.2 58 3-60 64-124 (447)
218 KOG4227 WD40 repeat protein [G 97.1 0.0028 6.2E-08 37.7 5.4 59 1-60 69-135 (609)
219 KOG3617 WD40 and TPR repeat-co 97.1 0.0023 5E-08 41.4 5.2 56 3-58 74-131 (1416)
220 KOG1517 Guanine nucleotide bin 97.1 0.0043 9.4E-08 40.9 6.4 58 2-59 1223-1288(1387)
221 KOG1409 Uncharacterized conser 97.0 0.0018 3.9E-08 37.8 4.2 61 2-62 211-274 (404)
222 PRK01742 tolB translocation pr 97.0 0.014 3.1E-07 34.6 7.7 57 2-59 217-279 (429)
223 KOG1523 Actin-related protein 96.9 0.0055 1.2E-07 35.5 5.6 56 2-57 69-129 (361)
224 KOG2111 Uncharacterized conser 96.9 0.0093 2E-07 34.5 6.2 49 8-56 157-210 (346)
225 KOG1523 Actin-related protein 96.9 0.0039 8.5E-08 36.0 4.6 54 3-56 25-83 (361)
226 KOG0771 Prolactin regulatory e 96.9 0.0087 1.9E-07 35.4 6.0 55 1-55 294-351 (398)
227 KOG4532 WD40-like repeat conta 96.9 0.0036 7.8E-08 35.6 4.4 41 2-42 217-262 (344)
228 KOG1273 WD40 repeat protein [G 96.7 0.013 2.9E-07 34.1 6.2 63 1-63 166-229 (405)
229 KOG2139 WD40 repeat protein [G 96.7 0.015 3.3E-07 34.4 6.1 53 3-55 210-265 (445)
230 KOG2315 Predicted translation 96.6 0.0083 1.8E-07 36.8 5.1 52 10-63 336-395 (566)
231 COG4946 Uncharacterized protei 96.6 0.027 5.8E-07 34.6 7.1 57 3-60 374-431 (668)
232 KOG0321 WD40 repeat-containing 96.6 0.0065 1.4E-07 37.9 4.7 57 2-58 66-130 (720)
233 KOG3881 Uncharacterized conser 96.6 0.018 3.8E-07 34.2 6.1 61 2-62 218-279 (412)
234 KOG0650 WD40 repeat nucleolar 96.6 0.0014 3.1E-08 40.5 1.9 50 2-51 621-671 (733)
235 PF08553 VID27: VID27 cytoplas 96.6 0.012 2.5E-07 37.8 5.7 51 1-51 589-639 (794)
236 KOG3914 WD repeat protein WDR4 96.5 0.012 2.7E-07 34.7 4.9 59 1-60 164-223 (390)
237 KOG2394 WD40 protein DMR-N9 [G 96.4 0.01 2.2E-07 36.6 4.5 40 1-40 345-384 (636)
238 PRK01742 tolB translocation pr 96.4 0.012 2.5E-07 35.0 4.8 51 9-60 183-236 (429)
239 KOG2695 WD40 repeat protein [G 96.4 0.0099 2.1E-07 34.9 4.3 58 1-58 312-376 (425)
240 PF12894 Apc4_WD40: Anaphase-p 96.4 0.0078 1.7E-07 25.3 3.0 30 30-59 11-40 (47)
241 PRK05137 tolB translocation pr 96.3 0.063 1.4E-06 32.0 7.2 49 10-59 226-277 (435)
242 KOG2041 WD40 repeat protein [G 96.2 0.012 2.6E-07 37.7 4.1 56 1-56 27-99 (1189)
243 PF07569 Hira: TUP1-like enhan 95.9 0.12 2.5E-06 28.5 7.4 58 1-58 23-95 (219)
244 TIGR02800 propeller_TolB tol-p 95.9 0.14 2.9E-06 30.1 7.5 49 10-59 214-265 (417)
245 PRK02889 tolB translocation pr 95.9 0.16 3.4E-06 30.3 7.7 48 11-59 221-271 (427)
246 PRK11028 6-phosphogluconolacto 95.8 0.15 3.3E-06 29.1 7.3 55 3-58 5-65 (330)
247 PF02239 Cytochrom_D1: Cytochr 95.8 0.044 9.6E-07 32.2 5.2 58 4-61 10-67 (369)
248 KOG0322 G-protein beta subunit 95.7 0.023 4.9E-07 32.4 3.6 40 2-41 167-216 (323)
249 KOG1064 RAVE (regulator of V-A 95.7 0.037 7.9E-07 38.8 4.8 57 2-58 2222-2281(2439)
250 KOG1064 RAVE (regulator of V-A 95.5 0.027 5.9E-07 39.3 3.9 54 7-60 2312-2366(2439)
251 KOG3914 WD repeat protein WDR4 95.5 0.034 7.4E-07 32.9 3.9 44 12-56 134-177 (390)
252 PRK11028 6-phosphogluconolacto 95.5 0.17 3.6E-06 28.9 6.6 56 2-58 241-304 (330)
253 PRK05137 tolB translocation pr 95.5 0.19 4E-06 30.0 7.0 49 11-60 183-234 (435)
254 PRK03629 tolB translocation pr 95.5 0.22 4.8E-06 29.8 7.2 48 11-59 268-318 (429)
255 PRK04922 tolB translocation pr 95.3 0.28 6.1E-06 29.3 7.4 48 11-59 229-279 (433)
256 KOG1354 Serine/threonine prote 95.3 0.11 2.4E-06 30.8 5.4 33 27-59 161-194 (433)
257 KOG4640 Anaphase-promoting com 95.2 0.14 3.1E-06 32.3 6.0 58 2-60 34-92 (665)
258 KOG2066 Vacuolar assembly/sort 95.1 0.14 2.9E-06 33.2 5.8 50 1-51 84-138 (846)
259 PRK02889 tolB translocation pr 95.1 0.13 2.8E-06 30.7 5.4 49 11-60 177-228 (427)
260 PRK04922 tolB translocation pr 95.0 0.34 7.4E-06 29.0 7.2 55 4-59 264-323 (433)
261 KOG1832 HIV-1 Vpr-binding prot 95.0 0.073 1.6E-06 35.3 4.5 48 1-48 1114-1161(1516)
262 KOG2395 Protein involved in va 95.0 0.11 2.5E-06 32.3 5.0 50 2-51 443-492 (644)
263 PF04762 IKI3: IKI3 family; I 94.8 0.31 6.8E-06 32.2 6.9 56 3-59 90-151 (928)
264 KOG1275 PAB-dependent poly(A) 94.7 0.13 2.8E-06 33.9 5.1 48 1-50 188-235 (1118)
265 KOG2321 WD40 repeat protein [G 94.7 0.2 4.4E-06 31.5 5.7 54 5-58 150-205 (703)
266 KOG2695 WD40 repeat protein [G 94.7 0.083 1.8E-06 31.3 3.9 59 2-60 266-329 (425)
267 PF04053 Coatomer_WDAD: Coatom 94.7 0.21 4.6E-06 30.3 5.7 50 9-60 125-175 (443)
268 PRK03629 tolB translocation pr 94.7 0.35 7.6E-06 29.0 6.5 50 10-60 223-275 (429)
269 PRK04792 tolB translocation pr 94.3 0.66 1.4E-05 28.0 7.1 55 4-59 278-337 (448)
270 TIGR03300 assembly_YfgL outer 94.3 0.59 1.3E-05 27.2 7.0 30 2-31 322-351 (377)
271 PLN02919 haloacid dehalogenase 94.1 0.86 1.9E-05 30.7 7.8 57 3-59 818-887 (1057)
272 COG5170 CDC55 Serine/threonine 94.0 0.34 7.3E-06 28.6 5.3 33 28-60 170-203 (460)
273 PRK00178 tolB translocation pr 94.0 0.75 1.6E-05 27.4 7.3 48 11-59 224-274 (430)
274 KOG1645 RING-finger-containing 94.0 0.55 1.2E-05 28.5 6.2 60 2-62 208-268 (463)
275 KOG4649 PQQ (pyrrolo-quinoline 93.8 0.66 1.4E-05 26.8 6.1 60 1-60 64-123 (354)
276 KOG2444 WD40 repeat protein [G 93.6 0.49 1.1E-05 26.5 5.2 29 2-30 116-144 (238)
277 KOG2079 Vacuolar assembly/sort 93.3 0.73 1.6E-05 31.2 6.3 55 2-56 144-201 (1206)
278 PF10313 DUF2415: Uncharacteri 93.2 0.29 6.4E-06 20.2 3.3 30 31-60 1-33 (43)
279 PRK04792 tolB translocation pr 93.1 1.2 2.6E-05 27.0 7.6 49 11-60 243-294 (448)
280 KOG1334 WD40 repeat protein [G 92.8 0.16 3.6E-06 31.2 3.0 36 24-59 136-173 (559)
281 PF11715 Nup160: Nucleoporin N 92.3 0.51 1.1E-05 29.1 4.7 23 2-24 232-254 (547)
282 PF15492 Nbas_N: Neuroblastoma 92.3 0.62 1.3E-05 26.8 4.6 26 30-55 229-256 (282)
283 KOG1240 Protein kinase contain 92.1 0.19 4.2E-06 34.1 2.8 43 20-62 1038-1081(1431)
284 TIGR02800 propeller_TolB tol-p 92.1 1.5 3.3E-05 25.8 7.4 49 11-60 303-354 (417)
285 KOG3621 WD40 repeat-containing 92.0 0.24 5.2E-06 31.7 3.0 52 3-54 91-148 (726)
286 PRK00178 tolB translocation pr 91.9 1.7 3.6E-05 25.9 7.0 54 5-59 260-318 (430)
287 KOG1354 Serine/threonine prote 91.7 1.8 3.9E-05 26.0 6.2 61 1-61 38-119 (433)
288 COG4946 Uncharacterized protei 91.5 1.6 3.4E-05 27.4 5.9 47 2-48 415-461 (668)
289 smart00564 PQQ beta-propeller 90.7 0.49 1.1E-05 17.5 4.1 24 2-25 8-31 (33)
290 KOG4532 WD40-like repeat conta 90.5 2.2 4.8E-05 24.8 6.4 61 2-62 172-235 (344)
291 KOG4497 Uncharacterized conser 90.4 2.2 4.7E-05 25.6 5.7 44 4-48 108-151 (447)
292 PF01011 PQQ: PQQ enzyme repea 90.3 0.64 1.4E-05 18.2 4.4 26 2-27 2-27 (38)
293 KOG1409 Uncharacterized conser 89.9 2.9 6.2E-05 25.1 6.2 53 5-57 170-226 (404)
294 KOG1912 WD40 repeat protein [G 89.8 0.67 1.4E-05 30.5 3.5 41 2-42 439-479 (1062)
295 PRK01029 tolB translocation pr 89.5 3.2 7E-05 25.1 7.7 48 11-59 352-402 (428)
296 COG5167 VID27 Protein involved 89.4 1.2 2.7E-05 28.2 4.3 51 1-51 574-624 (776)
297 KOG0309 Conserved WD40 repeat- 88.7 1.5 3.3E-05 28.9 4.5 57 2-58 129-188 (1081)
298 COG5170 CDC55 Serine/threonine 87.9 1.7 3.7E-05 25.9 4.1 59 3-61 237-312 (460)
299 KOG4499 Ca2+-binding protein R 87.3 4 8.6E-05 23.5 6.7 46 3-48 226-273 (310)
300 KOG0309 Conserved WD40 repeat- 87.1 0.4 8.7E-06 31.3 1.4 50 9-58 179-232 (1081)
301 KOG1912 WD40 repeat protein [G 86.8 2.4 5.3E-05 28.2 4.6 39 2-40 81-119 (1062)
302 PF03088 Str_synth: Strictosid 86.4 2.4 5.3E-05 20.2 5.0 41 7-48 34-74 (89)
303 PF10282 Lactonase: Lactonase, 85.9 5.1 0.00011 23.4 7.4 56 4-59 261-323 (345)
304 KOG0882 Cyclophilin-related pe 85.5 0.12 2.5E-06 31.7 -1.3 50 1-50 21-73 (558)
305 PF00930 DPPIV_N: Dipeptidyl p 85.4 3.6 7.9E-05 24.0 4.7 45 10-55 23-68 (353)
306 PF14783 BBS2_Mid: Ciliary BBS 85.3 3.3 7.2E-05 20.7 7.1 35 2-39 17-51 (111)
307 KOG1275 PAB-dependent poly(A) 85.3 9.6 0.00021 26.0 7.1 55 2-56 280-340 (1118)
308 PRK01029 tolB translocation pr 84.9 6.6 0.00014 23.8 6.1 26 23-48 319-344 (428)
309 KOG1920 IkappaB kinase complex 84.9 11 0.00024 26.4 7.6 55 3-59 83-140 (1265)
310 PLN02919 haloacid dehalogenase 84.4 11 0.00023 25.9 7.5 56 3-58 755-833 (1057)
311 PF01436 NHL: NHL repeat; Int 84.2 1.5 3.3E-05 15.9 2.4 20 35-54 6-25 (28)
312 KOG4640 Anaphase-promoting com 84.1 3.5 7.6E-05 26.5 4.3 40 1-40 75-115 (665)
313 PF14761 HPS3_N: Hermansky-Pud 83.8 5.7 0.00012 22.2 6.1 45 3-48 31-77 (215)
314 PF13360 PQQ_2: PQQ-like domai 83.3 5.3 0.00011 21.5 7.1 27 2-28 38-64 (238)
315 PF13360 PQQ_2: PQQ-like domai 83.1 4.8 0.0001 21.6 4.3 23 2-24 214-236 (238)
316 KOG0280 Uncharacterized conser 82.5 7.9 0.00017 22.9 5.4 58 3-60 136-196 (339)
317 PRK04043 tolB translocation pr 81.9 9.2 0.0002 23.2 7.7 49 10-59 213-264 (419)
318 PF15492 Nbas_N: Neuroblastoma 81.8 8.1 0.00018 22.5 7.4 28 33-60 46-73 (282)
319 KOG3616 Selective LIM binding 81.0 5.1 0.00011 27.0 4.3 56 2-58 28-83 (1636)
320 TIGR03300 assembly_YfgL outer 80.7 9.1 0.0002 22.4 7.3 26 2-27 67-92 (377)
321 KOG2079 Vacuolar assembly/sort 79.8 2.1 4.6E-05 29.2 2.4 55 3-59 102-161 (1206)
322 PF11768 DUF3312: Protein of u 79.5 9.8 0.00021 24.2 5.0 31 28-58 257-287 (545)
323 PF12657 TFIIIC_delta: Transcr 79.2 6.3 0.00014 20.8 3.8 23 33-55 7-29 (173)
324 PF00780 CNH: CNH domain; Int 79.0 8.9 0.00019 21.3 6.0 54 1-56 8-62 (275)
325 TIGR02658 TTQ_MADH_Hv methylam 78.9 11 0.00025 22.5 6.2 46 10-56 279-328 (352)
326 TIGR02276 beta_rpt_yvtn 40-res 78.8 3.2 6.9E-05 16.0 5.5 25 3-27 7-31 (42)
327 smart00036 CNH Domain found in 78.2 11 0.00024 21.8 5.9 56 2-59 15-72 (302)
328 KOG3621 WD40 repeat-containing 77.9 6.4 0.00014 25.7 4.0 51 1-51 46-97 (726)
329 KOG2314 Translation initiation 76.7 17 0.00036 23.6 5.4 46 10-55 282-331 (698)
330 PF15390 DUF4613: Domain of un 76.7 5.9 0.00013 25.6 3.6 31 30-60 155-186 (671)
331 PF12234 Rav1p_C: RAVE protein 75.8 19 0.00042 23.5 6.8 49 7-55 47-101 (631)
332 COG3386 Gluconolactonase [Carb 75.8 14 0.00029 21.7 4.8 39 20-58 152-191 (307)
333 PF13570 PQQ_3: PQQ-like domai 75.2 4.4 9.5E-05 15.8 3.0 17 2-18 23-39 (40)
334 KOG4190 Uncharacterized conser 74.9 5.4 0.00012 25.7 3.1 45 4-48 845-894 (1034)
335 KOG0882 Cyclophilin-related pe 74.8 18 0.0004 22.8 5.7 54 5-58 117-174 (558)
336 PF07995 GSDH: Glucose / Sorbo 74.8 11 0.00025 22.0 4.3 53 3-55 274-330 (331)
337 COG2706 3-carboxymuconate cycl 73.2 18 0.00038 21.8 7.1 58 2-59 158-222 (346)
338 PRK11138 outer membrane biogen 72.3 18 0.00039 21.5 7.4 27 2-28 337-363 (394)
339 COG0823 TolB Periplasmic compo 72.3 13 0.00028 22.8 4.2 47 11-60 219-270 (425)
340 PF10282 Lactonase: Lactonase, 70.9 19 0.0004 21.1 7.8 60 2-61 100-177 (345)
341 PRK02888 nitrous-oxide reducta 70.5 23 0.00051 23.1 5.1 51 9-62 295-353 (635)
342 PF14727 PHTB1_N: PTHB1 N-term 70.3 23 0.00049 21.9 5.8 49 2-53 147-197 (418)
343 PRK11138 outer membrane biogen 70.2 20 0.00044 21.3 5.6 26 2-27 122-147 (394)
344 TIGR02658 TTQ_MADH_Hv methylam 70.1 21 0.00046 21.4 7.1 37 10-48 27-63 (352)
345 PF03178 CPSF_A: CPSF A subuni 69.3 16 0.00035 21.0 4.1 51 10-61 62-118 (321)
346 KOG1520 Predicted alkaloid syn 68.1 9.7 0.00021 23.1 3.0 53 4-57 193-249 (376)
347 KOG2315 Predicted translation 67.6 30 0.00065 22.2 7.5 43 11-56 295-342 (566)
348 COG2706 3-carboxymuconate cycl 67.5 25 0.00054 21.2 8.0 63 2-64 102-181 (346)
349 KOG3522 Predicted guanine nucl 65.2 41 0.0009 23.0 5.8 48 4-51 639-689 (925)
350 PF04841 Vps16_N: Vps16, N-ter 64.4 30 0.00065 21.1 6.7 47 11-58 62-109 (410)
351 cd00216 PQQ_DH Dehydrogenases 64.1 24 0.00051 21.9 4.3 27 2-28 408-434 (488)
352 KOG1008 Uncharacterized conser 63.6 4.5 9.7E-05 26.4 1.2 58 2-60 210-275 (783)
353 PF07676 PD40: WD40-like Beta 63.5 8.8 0.00019 14.6 3.2 16 31-46 9-24 (39)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 62.5 29 0.00062 21.9 4.4 27 2-28 474-500 (527)
355 PF14655 RAB3GAP2_N: Rab3 GTPa 61.8 22 0.00048 21.9 3.8 37 26-62 303-339 (415)
356 PF08596 Lgl_C: Lethal giant l 58.1 37 0.0008 20.7 4.3 23 1-23 98-120 (395)
357 PRK04043 tolB translocation pr 57.7 42 0.0009 20.5 6.5 36 10-46 257-292 (419)
358 KOG2280 Vacuolar assembly/sort 55.4 24 0.00053 23.6 3.3 52 12-64 66-118 (829)
359 KOG3630 Nuclear pore complex, 54.5 18 0.00039 25.5 2.7 26 30-55 198-223 (1405)
360 PF04762 IKI3: IKI3 family; I 53.5 64 0.0014 22.2 5.1 34 30-63 426-461 (928)
361 PF08450 SGL: SMP-30/Gluconola 53.2 37 0.00081 18.6 7.4 54 3-59 15-69 (246)
362 PF07433 DUF1513: Protein of u 52.3 49 0.0011 19.7 7.7 43 6-48 23-68 (305)
363 PRK13616 lipoprotein LpqB; Pro 49.8 66 0.0014 20.9 4.6 18 30-47 447-464 (591)
364 KOG1983 Tomosyn and related SN 47.5 30 0.00066 23.8 3.0 20 2-21 248-267 (993)
365 PF12768 Rax2: Cortical protei 47.3 57 0.0012 19.0 4.3 37 10-48 16-54 (281)
366 KOG2041 WD40 repeat protein [G 43.9 37 0.0008 23.1 2.9 42 3-44 86-129 (1189)
367 PF08728 CRT10: CRT10; InterP 41.2 85 0.0018 21.1 4.1 56 2-57 179-243 (717)
368 KOG3535 Adaptor protein Disabl 40.1 90 0.002 19.8 3.9 30 4-39 96-125 (557)
369 PF11455 DUF3018: Protein of 38.8 28 0.00061 15.7 1.4 14 48-61 16-29 (65)
370 PF01453 B_lectin: D-mannose b 37.9 54 0.0012 16.1 8.3 54 2-56 21-77 (114)
371 PF14583 Pectate_lyase22: Olig 37.3 1E+02 0.0022 19.1 3.9 26 2-28 50-77 (386)
372 COG5354 Uncharacterized protei 37.3 44 0.00095 21.5 2.4 42 14-55 16-58 (561)
373 PRK00339 minC septum formation 37.1 44 0.00095 19.1 2.3 35 8-42 177-212 (249)
374 KOG2395 Protein involved in va 36.0 1.3E+02 0.0028 19.8 6.1 58 4-62 350-416 (644)
375 KOG2114 Vacuolar assembly/sort 35.9 1.5E+02 0.0033 20.6 6.5 50 2-51 79-146 (933)
376 KOG1559 Gamma-glutamyl hydrola 35.7 80 0.0017 18.5 3.1 23 24-46 252-274 (340)
377 PF10584 Proteasome_A_N: Prote 35.3 7.6 0.00017 13.8 -0.6 6 38-43 8-13 (23)
378 PF13964 Kelch_6: Kelch motif 34.3 40 0.00086 13.5 1.9 8 9-16 11-18 (50)
379 TIGR03606 non_repeat_PQQ dehyd 31.4 1.4E+02 0.003 18.9 7.3 57 2-58 371-433 (454)
380 PF06977 SdiA-regulated: SdiA- 31.2 1.1E+02 0.0023 17.5 7.0 47 4-51 187-242 (248)
381 PF14781 BBS2_N: Ciliary BBSom 31.1 86 0.0019 16.4 4.5 19 2-20 12-30 (136)
382 KOG2114 Vacuolar assembly/sort 31.0 1.9E+02 0.0041 20.2 7.2 49 11-59 194-244 (933)
383 PF06433 Me-amine-dh_H: Methyl 30.3 1.3E+02 0.0029 18.3 4.0 21 7-27 309-329 (342)
384 PF14326 DUF4384: Domain of un 29.5 68 0.0015 14.7 3.1 25 2-26 11-35 (83)
385 PF07250 Glyoxal_oxid_N: Glyox 29.3 1.2E+02 0.0026 17.4 3.7 27 35-61 174-200 (243)
386 PF05096 Glu_cyclase_2: Glutam 29.0 1.3E+02 0.0027 17.6 5.9 54 6-62 106-159 (264)
387 KOG2467 Glycine/serine hydroxy 27.6 61 0.0013 20.2 1.9 17 3-19 344-360 (477)
388 PRK05177 minC septum formation 27.2 79 0.0017 17.9 2.2 38 8-45 167-205 (239)
389 PF11090 DUF2833: Protein of u 26.9 74 0.0016 15.2 1.8 29 35-63 2-31 (86)
390 PF09631 Sen15: Sen15 protein; 26.5 81 0.0018 15.2 2.0 19 2-20 76-94 (101)
391 TIGR03118 PEPCTERM_chp_1 conse 26.2 1.6E+02 0.0035 17.9 4.7 28 3-30 264-291 (336)
392 PRK04804 minC septum formation 26.1 71 0.0015 17.8 1.9 35 8-42 148-183 (221)
393 PRK04596 minC septum formation 25.7 98 0.0021 17.9 2.4 35 8-42 176-211 (248)
394 PF14870 PSII_BNR: Photosynthe 24.6 1.6E+02 0.0035 17.4 7.1 26 29-54 185-211 (302)
395 PF05694 SBP56: 56kDa selenium 24.5 2E+02 0.0043 18.4 4.8 31 10-40 222-254 (461)
396 PF02897 Peptidase_S9_N: Proly 24.0 1E+02 0.0022 18.4 2.5 32 11-44 151-183 (414)
397 PF06200 tify: tify domain; I 23.6 67 0.0015 12.6 1.5 11 6-16 10-20 (36)
398 PF13130 DUF3952: Domain of un 23.0 57 0.0012 16.2 1.0 13 2-14 30-42 (107)
399 KOG2280 Vacuolar assembly/sort 22.9 2.7E+02 0.0058 19.3 6.7 52 2-53 96-150 (829)
400 PRK00030 minC septum formation 22.7 1.1E+02 0.0024 18.2 2.3 35 8-42 218-253 (292)
401 PRK04516 minC septum formation 22.0 1.2E+02 0.0027 17.4 2.4 35 8-42 161-196 (235)
402 PF13540 RCC1_2: Regulator of 21.9 63 0.0014 11.7 2.8 12 44-55 12-23 (30)
403 PF15644 Tox-PL: Papain fold t 21.6 1.2E+02 0.0026 14.8 2.7 15 7-21 95-109 (111)
404 PRK03511 minC septum formation 21.5 1E+02 0.0022 17.4 2.0 36 8-43 156-192 (228)
405 PF14779 BBS1: Ciliary BBSome 21.3 1.9E+02 0.0041 16.9 6.6 26 2-27 197-222 (257)
406 cd01215 Dab Disabled (Dab) Pho 21.1 1.5E+02 0.0032 15.6 3.7 19 4-23 57-75 (139)
407 KOG2247 WD40 repeat-containing 21.1 1.3E+02 0.0028 19.6 2.5 43 6-48 135-177 (615)
408 TIGR00223 panD L-aspartate-alp 20.1 1.5E+02 0.0032 15.3 3.8 20 11-30 43-64 (126)
No 1
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.6e-12 Score=71.41 Aligned_cols=63 Identities=38% Similarity=0.729 Sum_probs=56.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeC-CCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 63 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~ 63 (69)
+++++|+.||+|.+|++.++..+..+.+ +.+++.|+.|+|...++++++..+.+|.++...+.
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~~~ 308 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDALP 308 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEeccccccC
Confidence 5789999999999999999998888877 68899999999999999999999999999876654
No 2
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.40 E-value=7.5e-13 Score=76.22 Aligned_cols=58 Identities=33% Similarity=0.648 Sum_probs=50.8
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCC-CcEEEEcCC--cEEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-SLMFVTGSS--ELSFWIPD 58 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~s~~~--~~~~~~~~ 58 (69)
++++||++|++|+||+..+++++..+.+|...|+||+|+|. ..|+||++. .++||-+.
T Consensus 453 ~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 37899999999999999999999999999999999999995 568999854 47787654
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.40 E-value=9.1e-13 Score=79.44 Aligned_cols=60 Identities=23% Similarity=0.417 Sum_probs=53.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
.|+++||.|.+|++||+.+|..+..+.+|.++|.+++|+|.|..+++|+.+..|.+||+.
T Consensus 548 ~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 548 NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 378999999999999999999888899999999999999999999999877555555554
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.33 E-value=9.8e-12 Score=68.66 Aligned_cols=59 Identities=17% Similarity=0.377 Sum_probs=52.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~ 59 (69)
++++++++|+.+++||+.+++...++.+|...|.+++|+|+...+++++.+..+-+|++
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt 134 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT 134 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence 47899999999999999999888889999999999999999999999977766655554
No 5
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=2e-11 Score=69.34 Aligned_cols=62 Identities=23% Similarity=0.430 Sum_probs=51.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCCCcCc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKLGA 64 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~~~~~ 64 (69)
+++.+++.|++|++||+.++..+..+.+|..-|..++|+|.|.+++|+.++ +++|. .+....
T Consensus 305 ~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd--l~~~~c 368 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD--LKNLQC 368 (406)
T ss_pred cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE--ecccee
Confidence 368999999999999999999899999999999999999999999988444 56654 444333
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.28 E-value=1.3e-11 Score=70.73 Aligned_cols=57 Identities=21% Similarity=0.527 Sum_probs=51.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~ 58 (69)
.+++|+.|.++++||.++..++....+|..=|.|++|+|++..+++|+. +|++|.+.
T Consensus 129 ~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 6899999999999999999999999999999999999999999999955 46666543
No 7
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=4.2e-11 Score=70.30 Aligned_cols=57 Identities=26% Similarity=0.529 Sum_probs=50.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 57 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~ 57 (69)
+.++||+.|++|++||+.+++....+.+|..+|.+++|++++..+++++.+ +++|..
T Consensus 259 ~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 259 NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 468999999999999999999899999999999999999999999998655 555543
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.27 E-value=1.6e-11 Score=67.84 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=51.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
+++++++|++|++||+++-+....+.+|.+.++.+.++|+|..+++|..+..+.+||.+.
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE 223 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC
Confidence 589999999999999988877777899999999999999999999997765555555554
No 9
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=71.21 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=56.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCccc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYV 66 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 66 (69)
.|.+|..||.|+|||+.++.....+.+|.++|..++|+.+|..++++.++..+.+||.+++..++
T Consensus 361 ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc
Confidence 36789999999999999888888899999999999999999999998666556777788777654
No 10
>PTZ00421 coronin; Provisional
Probab=99.27 E-value=5.5e-11 Score=70.47 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=49.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
.+++++.|+.|++||+.++.....+.+|...|.+++|+|++..+++++.+..+.+||.+
T Consensus 140 iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 140 VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECC
Confidence 68999999999999999888777888999999999999999999988665444444443
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.23 E-value=2.1e-11 Score=73.72 Aligned_cols=56 Identities=16% Similarity=0.410 Sum_probs=50.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWI 56 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~ 56 (69)
++|++|++||.|++||+.++..+..+.+|++-+..+.|+.++.++++++. ++++|.
T Consensus 590 r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 590 RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 58999999999999999999999999999999999999999999999854 577764
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=8.3e-11 Score=69.05 Aligned_cols=57 Identities=21% Similarity=0.563 Sum_probs=48.7
Q ss_pred EEEEEeCCCcEEEEEC-CCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275 2 FVISGSGDGSVYAWSV-RSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~-~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~ 58 (69)
++++++.|+++++||+ ..+..+..+.+|...|.+++|+|++.++++++.+ +++|...
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence 6899999999999999 4457788999999999999999999999998555 6666544
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.20 E-value=1e-10 Score=65.15 Aligned_cols=61 Identities=28% Similarity=0.470 Sum_probs=55.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
+.++||+.|+..++||++.+.....+.+|...|+.|+|.|++.-|++|+++....++|++.
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 4789999999999999999987778899999999999999999999998888888887764
No 14
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.20 E-value=1.2e-10 Score=64.11 Aligned_cols=59 Identities=20% Similarity=0.545 Sum_probs=50.9
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~ 60 (69)
.+++|++|+.++.||..++..+... .+|.++|.|++|+|++...++|+++ +++|+....
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 5788999999999999999887776 8999999999999999999999665 777765443
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.17 E-value=2.8e-11 Score=69.71 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=54.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 63 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~ 63 (69)
.+++|+.||++++|++++..++..+.+|..+|..|+|+|+|.+++|++-+....+||++.-.
T Consensus 233 ~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ 294 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS 294 (459)
T ss_pred ceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccch
Confidence 58999999999999999888888999999999999999999999999777666667666433
No 16
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.17 E-value=9.4e-11 Score=67.62 Aligned_cols=63 Identities=25% Similarity=0.379 Sum_probs=52.2
Q ss_pred EEEEEeCCCcEEEEECCC--CceEEEEeCCCCCCeEEEEcCC-CcEEEEcCCcEEEEcCCCCCcCc
Q 035275 2 FVISGSGDGSVYAWSVRS--GKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLSKLGA 64 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~--~~~~~~~~~~~~~v~~v~~~~~-~~~~~s~~~~~~~~~~~~~~~~~ 64 (69)
.|.++++|+.+.+||.++ .+......+|.+.+.|++|+|- +.++|+++.+.++.+||.++|.+
T Consensus 242 lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 242 LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK 307 (422)
T ss_pred hheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence 578899999999999994 4445566899999999999995 56788888888888888887765
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.16 E-value=1.2e-10 Score=63.90 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=47.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
+++.+|++||+++|||++... ....-.|.++|+++..+|+...++++|.+.+||+||+.
T Consensus 96 rWMyTgseDgt~kIWdlR~~~-~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 96 RWMYTGSEDGTVKIWDLRSLS-CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred eEEEecCCCceEEEEeccCcc-cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 367899999999999998732 33345677999999999998889999888777777754
No 18
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.15 E-value=1.1e-10 Score=67.39 Aligned_cols=59 Identities=20% Similarity=0.381 Sum_probs=50.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~ 60 (69)
.+++|+-|..-++||++++..+..+.+|.+.|..|.|+|+|..+++|+.+ +++|..+..
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 46889999999999999999998999999999999999999999998655 666654433
No 19
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.14 E-value=6.2e-11 Score=65.36 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=52.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~ 59 (69)
+-++++++|++|++|+.++.+++..+..|.+.|++++|+|+..++++++.+.+|-+|+.
T Consensus 264 KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 264 KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 35899999999999999999999999999999999999999888998877766666643
No 20
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1.1e-10 Score=65.80 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=51.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
++++|+.||.|.|||..+......+.+|..+|.+++|++++..+.+++.+-.+-+||+.
T Consensus 37 ~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 37 YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 68999999999999999988777789999999999999999999998877555556554
No 21
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=2e-10 Score=65.96 Aligned_cols=57 Identities=21% Similarity=0.407 Sum_probs=50.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP 57 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~ 57 (69)
++++||+.|.++++|++++.+....+++|...|.++.|+|+|..++++..+..+.+|
T Consensus 422 RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 422 RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 478999999999999999998778899999999999999999999999777554444
No 22
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=3.1e-10 Score=70.53 Aligned_cols=59 Identities=24% Similarity=0.445 Sum_probs=50.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLSKL 62 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~~~~ 62 (69)
+++|+|+|.+|+||+..+++.+..+.+|.+-|.|.+|.|....++|++- .+++| |+..|
T Consensus 107 WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW--DisGL 167 (1202)
T KOG0292|consen 107 WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW--DISGL 167 (1202)
T ss_pred eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE--eecch
Confidence 5899999999999999999999999999999999999998888888854 46665 45433
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.11 E-value=3.3e-10 Score=68.79 Aligned_cols=56 Identities=13% Similarity=0.310 Sum_probs=49.0
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
+.+++||+|.+.++|+++.......+.+|+..+-||+|+|....+++++.| +.||.
T Consensus 476 kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 368999999999999999888888999999999999999998888877555 66665
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.10 E-value=7.7e-10 Score=64.68 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=51.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
.+++++.|++|++||+..+.++..++.|..+|..++|+|++..+++|+.+..+..|+..
T Consensus 424 ~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 424 MLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred eEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 37889999999999999999999999999999999999999999999776555545444
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.10 E-value=6.6e-10 Score=62.03 Aligned_cols=60 Identities=20% Similarity=0.433 Sum_probs=52.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEcCCcEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~s~~~~~~~~~~~~~~ 61 (69)
.+++++.|.++.+||+++++....+.+|.+.|.+++++| +++.+++++-+....+||++.
T Consensus 158 ~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~ 218 (343)
T KOG0286|consen 158 HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS 218 (343)
T ss_pred ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence 588999999999999999999999999999999999999 889999986665555566553
No 26
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.09 E-value=4.7e-10 Score=64.28 Aligned_cols=62 Identities=27% Similarity=0.476 Sum_probs=49.9
Q ss_pred EEEEEeCCCcEEEEECCCCce--EEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 63 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~ 63 (69)
.|+||++||.|.|||++.++. ......|.+-|+.++|+....++++|+.+..+-+||++.++
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~ 335 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK 335 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc
Confidence 489999999999999998732 33348899999999999988899999877666666665443
No 27
>PTZ00421 coronin; Provisional
Probab=99.06 E-value=1.6e-09 Score=64.40 Aligned_cols=57 Identities=11% Similarity=0.401 Sum_probs=44.9
Q ss_pred EEEEEeCCCcEEEEECCCCc-------eEEEEeCCCCCCeEEEEcCCC-cEEEEcCC--cEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGK-------EVASWMSFDTEPPVIKWTPGS-LMFVTGSS--ELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~-------~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~--~~~~~~~~ 58 (69)
.|++|+.|+.|++||+.++. .+..+.+|...|.+++|+|.. .++++++. .+++|..+
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 68999999999999997642 356778999999999999975 57777644 46666544
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.05 E-value=1.9e-10 Score=66.30 Aligned_cols=63 Identities=27% Similarity=0.420 Sum_probs=57.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA 64 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 64 (69)
.++||+.|..|++||.+++..+.++.+|...|..+.|+|+++.+++++.|-.+-++|++.+++
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence 589999999999999999998999999999999999999999999999888888888875554
No 29
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.05 E-value=1.2e-09 Score=62.66 Aligned_cols=59 Identities=24% Similarity=0.636 Sum_probs=46.5
Q ss_pred EEEEEeCCCcEEEEECCC---CceEEEEeCCCCCCeEEEEcCCC--cEEEEc-CCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRS---GKEVASWMSFDTEPPVIKWTPGS--LMFVTG-SSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~---~~~~~~~~~~~~~v~~v~~~~~~--~~~~s~-~~~~~~~~~~~~ 60 (69)
+|++|++||++.|||++. +.++..+..|.++|.++.|+|.. .+.+++ |.++.+|...++
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 589999999999999975 45677889999999999999864 344444 566999964443
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.04 E-value=2.2e-09 Score=66.47 Aligned_cols=56 Identities=20% Similarity=0.382 Sum_probs=47.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEcCCc--EEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGSSE--LSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~s~~~~--~~~~~~ 57 (69)
++++++.||.|.+||+.+++.+..+.+|.+.|.+++|+| ++..+++++.+ +++|..
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence 588999999999999998888888899999999999997 67788888555 566543
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.03 E-value=1.8e-09 Score=66.08 Aligned_cols=61 Identities=18% Similarity=0.364 Sum_probs=50.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
+++++|++||+|++||..++-...++..|+..|..++|...+..+.+++-+.++..||+..
T Consensus 363 q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 4789999999999999999988889999999999999999998888875554444455443
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=2.8e-09 Score=59.03 Aligned_cols=60 Identities=25% Similarity=0.462 Sum_probs=52.6
Q ss_pred CEEEEEeCCCcEEEEECCCCc--eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
++|++++.|.++.||.-..+. .+..+.+|...|.|++|++++.++|+++.+.-+|.|+..
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 579999999999999987664 355679999999999999999999999999888888765
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.02 E-value=1.4e-09 Score=62.25 Aligned_cols=59 Identities=10% Similarity=0.250 Sum_probs=49.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL 59 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~ 59 (69)
++|++|+.|++++|||+.++....++.+|-..|..+++++....+.++..+ +..|....
T Consensus 164 ~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 164 EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 378999999999999999999888999999999999999988777777544 66664433
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=1e-09 Score=60.04 Aligned_cols=55 Identities=22% Similarity=0.388 Sum_probs=48.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~ 56 (69)
.+++|+.|..|.+||+.+|+....+.+|.++|+.++|+.+...+++++- .+++|.
T Consensus 73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wD 129 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWD 129 (307)
T ss_pred ccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEE
Confidence 3788999999999999999999999999999999999999889999854 566664
No 35
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.01 E-value=1.4e-09 Score=62.75 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=51.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 63 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~ 63 (69)
.|+++++||.|+|||....+....+.+|.-.|.+++|+|....+++++.+-.+-+||.+.-.
T Consensus 194 kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 194 KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 37899999999999998888788889999999999999999999998666455555555433
No 36
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.00 E-value=1.5e-09 Score=62.79 Aligned_cols=62 Identities=21% Similarity=0.499 Sum_probs=48.8
Q ss_pred EEEEEeCCCcEEEEECCCCc-eEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCCcC
Q 035275 2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSKLG 63 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~~~ 63 (69)
.|++|+.|++|.+||+++-+ .+..+.+|...|.+|.|+|.. .+++|++.+.++.+||+.+..
T Consensus 287 ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 287 ILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred eEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 48999999999999998753 467789999999999999975 567777666665566655443
No 37
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.8e-09 Score=58.74 Aligned_cols=57 Identities=18% Similarity=0.397 Sum_probs=46.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCC-CcEEEEcCCc--EEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSE--LSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~s~~~~--~~~~~~~ 58 (69)
.++++++|++|++|+...++.+.++.+|+..|...+|+|. ..++++++++ .++|..+
T Consensus 119 ~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr 178 (311)
T KOG0277|consen 119 IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR 178 (311)
T ss_pred eEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence 3667799999999999888889999999999999999985 5677776555 6666544
No 38
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.96 E-value=6.2e-09 Score=58.99 Aligned_cols=58 Identities=21% Similarity=0.345 Sum_probs=48.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEE---eCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASW---MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD 58 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~ 58 (69)
++++++|.|..|++|++.+...+..+ .+|++.|.++.|++++..++|++.+ +++|..+
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 47999999999999999988765554 6899999999999999999998554 6666544
No 39
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=4.9e-09 Score=57.80 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=51.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEcCCcEEEEcCCCCCcCc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGSSELSFWIPDLSKLGA 64 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~s~~~~~~~~~~~~~~~~~ 64 (69)
+.+++++.||.+++||++.......+..|...+.|+.|+. +..++++++.+..+..||++.+++
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT 225 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc
Confidence 3689999999999999976543444889999999999996 567899998877777777776654
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.96 E-value=6.5e-10 Score=64.99 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=52.7
Q ss_pred EEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
+|+|++.|+.|++|++.. +..+..+.+|..+|..+.|+.++..+.|++-+..+-+||.+.
T Consensus 229 LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence 689999999999999976 666788899999999999999999999998787777777764
No 41
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.95 E-value=2.6e-09 Score=59.22 Aligned_cols=64 Identities=25% Similarity=0.406 Sum_probs=53.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEE-EEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA 64 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 64 (69)
+++++|.+||.|.+||+.++..+. +...|...|+.++++|+..++++++.+-..-++|...|..
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV 224 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceee
Confidence 478999999999999999986554 4578999999999999999999998776666666666554
No 42
>PTZ00420 coronin; Provisional
Probab=98.94 E-value=9.2e-09 Score=62.07 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=43.8
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD 58 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~ 58 (69)
+++++.|+.|++||+.++.....+. |...|.+++|+|++.++++++. .+++|.++
T Consensus 141 LaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence 5789999999999999887665554 5577999999999999887744 46666544
No 43
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=7.5e-09 Score=60.19 Aligned_cols=60 Identities=25% Similarity=0.446 Sum_probs=50.5
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~ 61 (69)
.|+||+.|.+|.+||+.++++...+..|.+.|.++.|+|.. ..+++|+.+.++-+.|.+.
T Consensus 258 VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 258 VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 48999999999999999999888888899999999999864 5677887666666666554
No 44
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=4.1e-09 Score=64.57 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=49.4
Q ss_pred EEEEEeCCCcEEEEECCCCc-eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~~ 61 (69)
.|+++.+.|.+..||++... ....+..|.++|.|+.|+|++..+|+|+.| +++|.+...+
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 58899999999999997643 356778999999999999999999999665 6777665433
No 45
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.92 E-value=1.5e-08 Score=60.14 Aligned_cols=60 Identities=18% Similarity=0.434 Sum_probs=51.2
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEe---CCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWM---SFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~~~ 61 (69)
++++.+.||++.+||=.+++.+..+. +|.+.|..++|+|+...++++ |..++||....++
T Consensus 204 ~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 68999999999999999999888886 899999999999999888876 5567777655543
No 46
>PTZ00420 coronin; Provisional
Probab=98.91 E-value=1.3e-08 Score=61.49 Aligned_cols=57 Identities=18% Similarity=0.415 Sum_probs=43.5
Q ss_pred EEEEEeCCCcEEEEECCCCc--------eEEEEeCCCCCCeEEEEcCCCcE-EEEc--CCcEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGK--------EVASWMSFDTEPPVIKWTPGSLM-FVTG--SSELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~--------~~~~~~~~~~~v~~v~~~~~~~~-~~s~--~~~~~~~~~~ 58 (69)
.+++|+.|+.|++||+.++. ++..+.+|...|.+++|+|.+.. ++++ |..+++|...
T Consensus 89 lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~ 156 (568)
T PTZ00420 89 ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE 156 (568)
T ss_pred EEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC
Confidence 68999999999999997542 23456889999999999998754 4565 4457776543
No 47
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.89 E-value=4.8e-09 Score=60.57 Aligned_cols=58 Identities=14% Similarity=0.260 Sum_probs=47.9
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
.|+|++.|..|.+|++.++..+..+. |...|.++.|+.+|..+++++.+..+.+||.+
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr 203 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR 203 (472)
T ss_pred hHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCC
Confidence 36788899999999999999887777 99999999999999999998766444444443
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=5.6e-09 Score=65.18 Aligned_cols=60 Identities=12% Similarity=0.236 Sum_probs=53.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~~~~ 61 (69)
+++||++|-.|++|+..+.+.+.++.+|..-|+.+.|++....++|++ +.|+||.|..++
T Consensus 65 lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK 126 (1202)
T ss_pred eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence 589999999999999999988889999999999999999999888874 459999997664
No 49
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.89 E-value=1.8e-09 Score=65.57 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=51.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
.|++++.|.+|.+||+.+.+....+.+|.+.|..++|+|++..+++.+.+.++.+++...
T Consensus 692 vLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 692 VLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred HhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 367889999999999999988888999999999999999999999987776666655544
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.9e-09 Score=65.07 Aligned_cols=55 Identities=18% Similarity=0.474 Sum_probs=49.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
+++||++|..+++||..+...+.++.+|..-|..+.|.|...+++||+++ ++||.
T Consensus 199 ylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 199 YLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred eEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 79999999999999999887788899999999999999999999999665 66664
No 51
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.88 E-value=1.3e-08 Score=58.39 Aligned_cols=55 Identities=18% Similarity=0.462 Sum_probs=47.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
.+++|+.|..+++||+++...+..+.+|+.+|..|.+.|-...+++++.+ +++|.
T Consensus 249 vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 249 VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 57999999999999999999899999999999999999877777887555 55554
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.87 E-value=1.3e-08 Score=58.13 Aligned_cols=56 Identities=16% Similarity=0.320 Sum_probs=48.9
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~ 57 (69)
++++++.+|.|+.||.++|+.+..+.+|...|.++.++|+...+++++.+-...+|
T Consensus 340 ~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred hheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 67889999999999999999999999999999999999999999998665443333
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.87 E-value=5.1e-09 Score=60.02 Aligned_cols=58 Identities=21% Similarity=0.409 Sum_probs=46.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
+++++++.|.+|++|+..++..+..+.+|...|-|+++. +.++++|+.+..|.+||++
T Consensus 331 kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEecc
Confidence 478999999999999999998888899999988888876 4578888666555555544
No 54
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=1.1e-08 Score=62.57 Aligned_cols=55 Identities=22% Similarity=0.453 Sum_probs=44.0
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEcCCc--EEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~s~~~~--~~~~~ 56 (69)
++|+|.+.|.+|++|++.....++. -.|..-|+||+|+| +..+|+||+-| +++|.
T Consensus 381 ~fLLSSSMDKTVRLWh~~~~~CL~~-F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWs 438 (712)
T KOG0283|consen 381 NFLLSSSMDKTVRLWHPGRKECLKV-FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWS 438 (712)
T ss_pred CeeEeccccccEEeecCCCcceeeE-EecCCeeEEEEecccCCCcEeecccccceEEee
Confidence 4799999999999999986664444 46888899999999 56789999555 66663
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=3.2e-08 Score=60.00 Aligned_cols=60 Identities=17% Similarity=0.326 Sum_probs=53.0
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS 60 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~ 60 (69)
+++++|++|..|++|+..+...++.+..|..-|+++..+|....+.|++.+ +..|.|+.+
T Consensus 68 nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 68 NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc
Confidence 468999999999999999999999999999999999999998888887655 777877754
No 56
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.83 E-value=5.1e-09 Score=62.32 Aligned_cols=61 Identities=16% Similarity=0.345 Sum_probs=51.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSK 61 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~~ 61 (69)
++|++.++||.++|+|.++.+.+.....+-+...|+.|+||+..+++|++| +.+|.+...+
T Consensus 303 ~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 303 KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence 479999999999999999887766677778889999999999999999665 7888765443
No 57
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.81 E-value=1.9e-08 Score=61.43 Aligned_cols=57 Identities=12% Similarity=0.311 Sum_probs=49.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 57 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~ 57 (69)
+.++++|.|++|+||.+.+...++++.+|+..|..++|-.++..++|++.+ +.+|..
T Consensus 518 q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 518 QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 368999999999999999998899999999999999999999999998655 555543
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.80 E-value=3.4e-09 Score=60.70 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=46.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~~ 60 (69)
.++||..|.+|++||..+...+..+.+|++.|.|++|... .+++|+. .+++|.|+..
T Consensus 209 kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEecCCCceEEEEeccCC
Confidence 3689999999999999887777888999999999999865 7777754 4777776654
No 59
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.80 E-value=3.1e-09 Score=60.54 Aligned_cols=57 Identities=28% Similarity=0.547 Sum_probs=47.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceE--------EEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEV--------ASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP 57 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~--------~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~ 57 (69)
+|+++|+-||.|.+|+..+|+.- .+++.++..|.|+.|+.+..++++|+. .+.+|..
T Consensus 226 qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 58999999999999999988632 245678899999999999999999954 5777753
No 60
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.79 E-value=3.3e-08 Score=58.80 Aligned_cols=56 Identities=18% Similarity=0.440 Sum_probs=46.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceEE-EEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
.+|++|...+++.+||..++.... .+.-|+++|.|++|+|+..++++|+-+ +.+|.
T Consensus 500 ~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 500 AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 378999999999999998877533 355699999999999999999999555 55554
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.78 E-value=3.4e-08 Score=59.38 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=45.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~ 58 (69)
++++|+.|+.|.+||+.+++.+..+.+|.++|.++.+... ..+.+| |..+++|..+
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCC
Confidence 6899999999999999999999999999999999988774 556666 4446665443
No 62
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.77 E-value=1.3e-08 Score=40.93 Aligned_cols=35 Identities=26% Similarity=0.616 Sum_probs=29.0
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEE
Q 035275 21 KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW 55 (69)
Q Consensus 21 ~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~ 55 (69)
+.+..+.+|.+.|.+++|+|++..+++++.+ +++|
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vw 38 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVW 38 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEE
Confidence 3567789999999999999999999988655 5555
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.76 E-value=1.7e-08 Score=57.86 Aligned_cols=64 Identities=23% Similarity=0.338 Sum_probs=50.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCCCCcCccc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDLSKLGAYV 66 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~ 66 (69)
.++||+.||.|++||+...+....+..|.+.|.++.+.. +.++..| |..+..|..+...+.++.
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~til 145 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTIL 145 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCcceeee
Confidence 478999999999999998888889999999999998876 4455555 556888887765555443
No 64
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.76 E-value=5.1e-08 Score=55.09 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=46.5
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~ 58 (69)
.|++|++||.|.+|+...=..+..+.+|.++|+.++++|.+.+..+.+++-.+..||
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WN 155 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWN 155 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeeh
Confidence 589999999999999987777888999999999999999988766654444444444
No 65
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.75 E-value=2.2e-08 Score=61.55 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=57.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCcc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAY 65 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 65 (69)
+.+++|+.|..|++|.++=|...+++.+|...|.+++|.|+..++.+++.+..+-.||..++..+
T Consensus 563 klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 563 KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh
Confidence 36899999999999999988888899999999999999999888888888888888887776654
No 66
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.75 E-value=6e-08 Score=55.56 Aligned_cols=58 Identities=14% Similarity=0.361 Sum_probs=50.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD 58 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~ 58 (69)
+++++|+.|..-.+|+..++..+..+.+|...|.++.|+.++.++++|+- .+.+|.-.
T Consensus 77 ~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 77 NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 36789999999999999999988999999999999999999999999954 56666543
No 67
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.75 E-value=6.6e-08 Score=55.43 Aligned_cols=55 Identities=15% Similarity=0.369 Sum_probs=48.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEE
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFW 55 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~ 55 (69)
+|++|+.+|+++++||+.+++.+..+..|.+-+.+++|.....++++|+- ...+|
T Consensus 347 kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 347 KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeee
Confidence 58999999999999999999999999999999999999988889999854 45555
No 68
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.75 E-value=3.6e-08 Score=60.68 Aligned_cols=54 Identities=19% Similarity=0.535 Sum_probs=46.9
Q ss_pred EEEEeCCC-cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEc
Q 035275 3 VISGSGDG-SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWI 56 (69)
Q Consensus 3 ~~s~~~d~-~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~ 56 (69)
+..|+.|. .|.+|++.+|+.+-.+.+|.++|.++.|+|.+..++|+ |..+++|.
T Consensus 450 V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 55666676 79999999999999999999999999999999999998 55677774
No 69
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.74 E-value=1.7e-07 Score=50.10 Aligned_cols=56 Identities=25% Similarity=0.536 Sum_probs=44.5
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~ 57 (69)
++++++.|+.+.+|+..++.....+..|...+.++.|+|++..+++++.+..+.+|
T Consensus 233 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 46666669999999998887777788898899999999998888887555444433
No 70
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.74 E-value=4.7e-08 Score=60.17 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=48.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~ 56 (69)
+++.|.+||.|++|+..++.....+.+|...|+++.|...|..++||+ +++.+|.
T Consensus 79 ~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwD 135 (888)
T KOG0306|consen 79 LLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWD 135 (888)
T ss_pred eEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEE
Confidence 479999999999999998888888999999999999999999999985 4576663
No 71
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.74 E-value=1.5e-07 Score=50.25 Aligned_cols=58 Identities=19% Similarity=0.457 Sum_probs=46.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD 58 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~ 58 (69)
+++++++.||.+.+|+..++.....+..|...+..+.|+|++..+++++. .+.+|..+
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 36788999999999999888777778889888889999999877777644 46666544
No 72
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.74 E-value=6.8e-08 Score=54.26 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=50.7
Q ss_pred EEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
+|+||+.|..|.+|++.. .+....+.+|.+.|..+.|.+++..+.+++.+.++..||.+.
T Consensus 61 ~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 61 CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred eEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 689999999999999743 455777889999999999999999999987777777777653
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.73 E-value=2e-08 Score=55.57 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=48.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWI 56 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~ 56 (69)
++|++|+.|-.+.+||++.-..+..+.-++-+|+.++|+-++.++++++++..|=+
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEe
Confidence 58999999999999999866556778889999999999999999999998755443
No 74
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.73 E-value=4.6e-08 Score=58.29 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=50.5
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~ 62 (69)
..+++..||.|.|||+.+...+.++.+|...+.|+.+++++.-+=+|+-+-++..||.+..
T Consensus 523 vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 523 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh
Confidence 4577888999999999988888999999999999999999999989865555555555443
No 75
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.73 E-value=1.2e-07 Score=54.68 Aligned_cols=55 Identities=25% Similarity=0.424 Sum_probs=45.1
Q ss_pred EEEEEeCCCcEEEEECCCCc-eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~ 57 (69)
.|+||+.|+++++||+++.. ++..+.+|..+|.++.|+. +..+++|+.+-.+..+
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIF 415 (423)
T ss_pred EEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEe
Confidence 58999999999999999876 7889999999999999995 4567787655444443
No 76
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.72 E-value=1.4e-07 Score=52.11 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=48.0
Q ss_pred CEEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
++|++++.|.+++||+.++- +....+.+|.+=+-.+.||.++..+++++.+....+|++.
T Consensus 228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 58999999999999999876 4456778898777788899999999999766444445444
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.1e-08 Score=57.29 Aligned_cols=58 Identities=22% Similarity=0.474 Sum_probs=48.0
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEcC----CcEEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGS----SELSFWIPD 58 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~s~~----~~~~~~~~~ 58 (69)
++++||+.|+.+.|||.....+...+..|.+.|..++|+| +..++|+|. ..++||...
T Consensus 314 ~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~ 376 (484)
T KOG0305|consen 314 NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN 376 (484)
T ss_pred CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence 4689999999999999977777888999999999999999 567888873 346676544
No 78
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.68 E-value=9.9e-08 Score=53.63 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=50.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~ 58 (69)
++-.|+.|..+++||......+..+++|.+.|++++|.|...++.+++.+.++++-+
T Consensus 280 ~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 280 KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 355788899999999988788889999999999999999999999998888887643
No 79
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=6.4e-09 Score=63.50 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=48.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
+++.|+.+|.|++||+..++.+..+.+|...+..++|+|-+.++++++.+-.+-+||+.+
T Consensus 84 LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk 143 (825)
T KOG0267|consen 84 LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK 143 (825)
T ss_pred hhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc
Confidence 467889999999999999988889999999999999999999998775443333344443
No 80
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.67 E-value=6.3e-08 Score=54.75 Aligned_cols=56 Identities=21% Similarity=0.438 Sum_probs=46.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc--EEEEc--CCcEEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTG--SSELSFWI 56 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~--~~~s~--~~~~~~~~ 56 (69)
.+++||+.|-+|.+||+.....+..+..|.+.|+++.|.+... .++++ |+.+.+|.
T Consensus 54 ~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 54 PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 3789999999999999999888888999999999999987653 56666 44577764
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.66 E-value=1e-07 Score=55.33 Aligned_cols=55 Identities=29% Similarity=0.610 Sum_probs=44.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCC--CCCeEEEEcCCCcEEEEcCCc--EEEE
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFD--TEPPVIKWTPGSLMFVTGSSE--LSFW 55 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~~s~~~~--~~~~ 55 (69)
.|++.|+.||.|++|++.+++....+.... ..|.++.|+|.|..++++|.+ ..+|
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 378999999999999999998777765433 359999999999888888776 4444
No 82
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.66 E-value=6.4e-08 Score=59.56 Aligned_cols=61 Identities=30% Similarity=0.427 Sum_probs=51.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCC-CcEEEEcCCcEEEEcCCCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~s~~~~~~~~~~~~~~~ 62 (69)
.|+||++||.|+.||++.........+....|+.|+|+|. +..|+++.+...+.+||++.-
T Consensus 148 iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp 209 (839)
T KOG0269|consen 148 ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP 209 (839)
T ss_pred EEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence 6899999999999999988777667778888999999985 567888877877777877643
No 83
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.66 E-value=2.5e-07 Score=57.59 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=45.6
Q ss_pred EEEEEeCCCcEEEEECCCC------ceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRSG------KEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~------~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~ 57 (69)
++++++.|+.|++||+..+ ..+..+.+|...+.+++|+|++..+++++. .+.+|..
T Consensus 674 ~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 674 TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 6889999999999999743 346678899999999999999999998854 4666653
No 84
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.65 E-value=3.3e-07 Score=52.88 Aligned_cols=60 Identities=22% Similarity=0.558 Sum_probs=47.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEc-CC--CcEEEEc--CCcEEEEcCCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT-PG--SLMFVTG--SSELSFWIPDLSK 61 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~-~~--~~~~~s~--~~~~~~~~~~~~~ 61 (69)
+++++|+.||.+++||. .|+...++.+|.+++..+.+. ++ ...++++ |+.++.|.|+...
T Consensus 116 ~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 116 KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred ceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 47899999999999997 577788999999999977663 33 2356666 5569999988764
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.63 E-value=2.9e-07 Score=51.15 Aligned_cols=58 Identities=28% Similarity=0.254 Sum_probs=50.1
Q ss_pred EeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275 6 GSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 63 (69)
Q Consensus 6 ~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~ 63 (69)
...-|.|.|.....-+++..+..|...+.|+.|+|++..+++|+.+..+.+||++.|-
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI 222 (313)
T ss_pred ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh
Confidence 3445788888888778888999999999999999999999999999999999887653
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.61 E-value=2.9e-07 Score=54.22 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=50.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~~ 62 (69)
.+++|++|+.+++||+.+......+.+|+.-|+|.+++|.. .+++||+.|..+.+||.+..
T Consensus 125 ~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 125 MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 57899999999999998887655679999999999999964 57889977766666666544
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.1e-07 Score=51.63 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=43.5
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~ 62 (69)
.++|++.|++|++||++..+....+..- .-..++|.|+|.++|.+...-.|-++|.+.+
T Consensus 114 ~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 114 TFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred eEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 5899999999999999977655555322 2346789999999999855546666665544
No 88
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=7.3e-07 Score=49.25 Aligned_cols=59 Identities=17% Similarity=0.298 Sum_probs=47.5
Q ss_pred CEEEEEeCCCcEEEEECCCCc---eEEEEeCCCCCCeEEEEc-C-CCcEEEEc--CCcEEEEcCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGK---EVASWMSFDTEPPVIKWT-P-GSLMFVTG--SSELSFWIPDL 59 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~---~~~~~~~~~~~v~~v~~~-~-~~~~~~s~--~~~~~~~~~~~ 59 (69)
+.|++++.|+.|+|+..+.+. .+..+.+|.+++-.+.|. | .+.+++|+ |+.+.||....
T Consensus 24 krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN 89 (299)
T ss_pred ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence 358999999999999997654 466789999999999996 4 57889988 55678886543
No 89
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.60 E-value=4.2e-07 Score=51.42 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=48.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEcCCcEEEEcCCCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~~~~~~~~~~~~~~~ 62 (69)
++++|..|-.|.++|+.+|.....+.+|+..|..|.|+|... .+++++.+..+.+||+++.
T Consensus 160 LiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra 221 (397)
T KOG4283|consen 160 LIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA 221 (397)
T ss_pred EEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc
Confidence 467777777999999999987888999999999999999765 5667766655556666654
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.59 E-value=6e-07 Score=52.94 Aligned_cols=56 Identities=20% Similarity=0.330 Sum_probs=45.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~ 57 (69)
.++||+.||+|++||.++......--.|..+|..+.+-|.+..++++ +.++.+|..
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl 224 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDL 224 (487)
T ss_pred EEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEe
Confidence 48999999999999998775322334688899999999999899987 456999864
No 91
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.59 E-value=1.6e-07 Score=55.30 Aligned_cols=55 Identities=24% Similarity=0.408 Sum_probs=46.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEc--CCcEEEE
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTG--SSELSFW 55 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~--~~~~~~~ 55 (69)
++|++|+.||.+.+||..+-+.+..+..|+.+|..+.|.|... .++++ ++.+.+|
T Consensus 445 ~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred CeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence 4799999999999999999988889999999999999999753 45665 4556665
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.59 E-value=1.5e-07 Score=53.07 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=43.9
Q ss_pred EEEEEeCCCcEEEEECCCC-ce-EEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCC
Q 035275 2 FVISGSGDGSVYAWSVRSG-KE-VASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDL 59 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~-~~-~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~ 59 (69)
+++.+|+|++|++|++... .. .+....|.+++.++.|+.++..+.++ |....+|....
T Consensus 42 ~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 42 LLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred eEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 4678999999999999763 32 24456899999999999998776666 55577765433
No 93
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=2.8e-07 Score=55.59 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=51.9
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCC--CcEEEEcCCcEEEEcCCCCCcCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPG--SLMFVTGSSELSFWIPDLSKLGA 64 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~--~~~~~s~~~~~~~~~~~~~~~~~ 64 (69)
+|+||++|..+.|||.-..+.+..+ .+|.+-|.+++|-|. ..+++++..+..|.++|+..+++
T Consensus 64 lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~ 129 (758)
T KOG1310|consen 64 LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE 129 (758)
T ss_pred EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc
Confidence 6899999999999999877766666 699999999999984 46788887787888888776443
No 94
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=5.4e-07 Score=49.54 Aligned_cols=60 Identities=20% Similarity=0.476 Sum_probs=51.0
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
+++++|..|..+.+||++-++.+..+..|...|+|+.|+|.-..+.+++.+..|-+.|.+
T Consensus 244 rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 468999999999999999888888899999999999999998888888776666655543
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.57 E-value=3.7e-07 Score=55.60 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=51.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
.+++|+..+.+.+||.+++.....+.+|+.-|+++..++++..++|++.+..|.+||+.
T Consensus 185 ~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence 37889999999999999998888889999999999999999999999777666667665
No 96
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.57 E-value=8.3e-07 Score=50.12 Aligned_cols=55 Identities=33% Similarity=0.610 Sum_probs=44.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC--cEEEEc--CCcEEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS--LMFVTG--SSELSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~s~--~~~~~~~~~ 57 (69)
.+++|+.|+.+++||+.++. ..+...|.++|.++.|.+.. ..+++| |..+++|..
T Consensus 86 kVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 86 KVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred eEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 47899999999999999884 77888999999999998654 478888 455666643
No 97
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.55 E-value=6e-07 Score=51.62 Aligned_cols=57 Identities=16% Similarity=0.329 Sum_probs=46.6
Q ss_pred CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc---EEEE-cCCCCCcCcc
Q 035275 9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFW-IPDLSKLGAY 65 (69)
Q Consensus 9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~---~~~~-~~~~~~~~~~ 65 (69)
.|.|.+||..+-++...+..|.+.+-+++|+++|.++|++++. |+++ ..+.+++.+|
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence 4789999999988888999999999999999999999999765 4544 3445555554
No 98
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.55 E-value=3.9e-07 Score=54.97 Aligned_cols=54 Identities=22% Similarity=0.473 Sum_probs=35.5
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD 58 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~ 58 (69)
+.+|+.|.+|++|++.++..+..+.+|.++|++++++ +.+++++ |..+.+|.+.
T Consensus 304 ~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 304 LVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 4566777778888877777666666788888888777 3445554 3345555443
No 99
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.54 E-value=6.5e-07 Score=52.87 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=48.2
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~ 58 (69)
.|++++.|+.|.++-+....+...+.+|.+.|.++.|+|.+.+++|++.+.++-+|+
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS 387 (524)
T ss_pred eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence 478889999999999988888889989999999999999999999986664444444
No 100
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.54 E-value=3.8e-07 Score=57.44 Aligned_cols=56 Identities=21% Similarity=0.364 Sum_probs=49.8
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWI 56 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~ 56 (69)
.++++++-|++|.+|+..+...+..+.+|.+.|..+.|.|-+.++++-+. .+.+|.
T Consensus 142 ~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 142 SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred cEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEE
Confidence 37899999999999999999888899999999999999999999998644 477775
No 101
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=1.4e-07 Score=55.36 Aligned_cols=55 Identities=22% Similarity=0.543 Sum_probs=46.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
+++.|...|.+++|.+.+|..+..+..|--.|.|+.|+-++.+++|++.| +.+|+
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence 45555588999999999999888889999999999999999999999665 66664
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.51 E-value=1.8e-07 Score=53.35 Aligned_cols=54 Identities=22% Similarity=0.419 Sum_probs=47.6
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEc
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWI 56 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~ 56 (69)
+.+++.|.+-.+|.+.++..+..+.+|.+.|++++|++.+.+++++ |+...||.
T Consensus 163 ~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 163 CGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 5678899999999999999899999999999999999999888876 55578885
No 103
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.51 E-value=4.2e-07 Score=50.06 Aligned_cols=61 Identities=11% Similarity=0.216 Sum_probs=51.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
+|.++++.|.+|++|+...+..++...+|...|..++.+.+...+++++.+..+..||.+.
T Consensus 30 nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 30 NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 4778899999999999999998999999999999998888888899987776666666553
No 104
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.50 E-value=3.2e-07 Score=52.40 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=50.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
.++++++|.+-.+||+.++..+..+.+|+....-++-.|...++++++.+-.|.+||.+
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR 344 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR 344 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch
Confidence 47899999999999999999888899999988888888888888888777666666654
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=7.4e-07 Score=55.82 Aligned_cols=57 Identities=12% Similarity=0.271 Sum_probs=49.5
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~ 58 (69)
+++.|++|-.|++-+..+......+.+|+++|.++.|+|++.++|+. ++.+.+|..+
T Consensus 110 ~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 110 MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 67889999999999998888889999999999999999999999976 5557776654
No 106
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.48 E-value=8.4e-07 Score=51.97 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=46.0
Q ss_pred CEEEEEeCCCcEEEEECCCCc---eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGK---EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
+|++|++.|.+..+|.+.... ...++.+|..+|..+.|+|+...+++++.+-.+|+||..
T Consensus 237 kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 237 KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCC
Confidence 589999999999999985543 356778999999999999998877776444335555543
No 107
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=1.5e-06 Score=48.54 Aligned_cols=55 Identities=20% Similarity=0.383 Sum_probs=43.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEE---EE-eCCCCCCeEEEEcCCCcEEEEcCC--cEEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVA---SW-MSFDTEPPVIKWTPGSLMFVTGSS--ELSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~---~~-~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~ 56 (69)
.|++|+.|..|++|+...+.... .+ .+|...|+.++|+|.+..+++++- ...||.
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~ 89 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWK 89 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEee
Confidence 58999999999999997543322 22 479999999999999999998854 466664
No 108
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=1.7e-07 Score=59.35 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=50.3
Q ss_pred EEEEEeCCCcEEEEECCC---Cc---eEEEEeCCCCCCeEEEEcCC-CcEEEEcCCcEEEEcCCCCCcCc
Q 035275 2 FVISGSGDGSVYAWSVRS---GK---EVASWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLSKLGA 64 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~---~~---~~~~~~~~~~~v~~v~~~~~-~~~~~s~~~~~~~~~~~~~~~~~ 64 (69)
.++.|.+||.|.+||... +. .+.+...|.+.|..+.|++. ++.+++|+++..||+||++++++
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t 151 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET 151 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC
Confidence 478899999999999865 22 24556789999999999986 45999998887777788877655
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=3.8e-07 Score=51.33 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=43.8
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS 49 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~ 49 (69)
++|++|+.||.|.+||..+.+.++++......|-.++|+.++.++|.++
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 4699999999999999999988999988878889999999999988763
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.43 E-value=8.6e-07 Score=52.11 Aligned_cols=58 Identities=16% Similarity=0.361 Sum_probs=47.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCC--CcEEEEcCCcEEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG--SLMFVTGSSELSFWIPD 58 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~s~~~~~~~~~~~ 58 (69)
+||++|..|..|.||+.++.+....+.+|.+.|.+++|-.. ..+.++.|..+.+|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID 274 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehh
Confidence 58999999999999999999988889999999999988644 34444557778888654
No 111
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.42 E-value=2.5e-06 Score=48.42 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=43.5
Q ss_pred EEEEEeCCCc-EEEEECCCCceEEEEe--CCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275 2 FVISGSGDGS-VYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSLMFVTGSSELSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~-v~~wd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~ 57 (69)
.++++|..|+ |+|||..+|..+..+. .....|.|++|+|+..+++.+++..++..+
T Consensus 195 ~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 195 LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence 4799999995 7899999999887773 344678999999999998887655444333
No 112
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.41 E-value=2.3e-06 Score=47.86 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=48.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP 57 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~ 57 (69)
.+|+|++.|....+|-..+|+.+..+.+|++.|-|++..-+...+++++. .+.+|..
T Consensus 23 DLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 23 DLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred cEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 36899999999999999999999999999999999999887777887744 4666643
No 113
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.40 E-value=5.7e-06 Score=46.10 Aligned_cols=57 Identities=23% Similarity=0.473 Sum_probs=43.8
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPD 58 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~ 58 (69)
++++|.++|++|++||.+++..+.++. .+.+|.++-+++++.++..+ ...+.+|..+
T Consensus 156 ~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdak 213 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAK 213 (334)
T ss_pred ceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccc
Confidence 467888999999999999998766653 23457788889998887776 4568888643
No 114
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.40 E-value=1.4e-06 Score=49.19 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=41.3
Q ss_pred EEEEEeCCCcEEEEECCCCc-eEEEEeCCCCCCeEEEEcCCCc-EEEEcCCcEE
Q 035275 2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSL-MFVTGSSELS 53 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v~~~~~~~-~~~s~~~~~~ 53 (69)
.+++|++||.|++||.+..+ ++..+.+|..=+-+|+|+|... ++.+++.+..
T Consensus 229 ~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 229 ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred EEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence 58999999999999997654 5778899999999999999754 4556655533
No 115
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.39 E-value=1.1e-06 Score=54.15 Aligned_cols=56 Identities=29% Similarity=0.481 Sum_probs=43.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIP 57 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~ 57 (69)
+||+||+-||+|++|++...+ +..+..-...|+.+.|.|+|...+.| .+..+++..
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t 480 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKK-VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDT 480 (712)
T ss_pred CcEeecccccceEEeecCcCe-eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEc
Confidence 589999999999999997665 56666555889999999999877766 444555543
No 116
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.7e-06 Score=50.80 Aligned_cols=55 Identities=25% Similarity=0.407 Sum_probs=45.4
Q ss_pred EeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEc-CCCC
Q 035275 6 GSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWI-PDLS 60 (69)
Q Consensus 6 ~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~-~~~~ 60 (69)
|..+..|.+|+..+-+.+..+.+|..+|..++++|++..++++ |+++++|. |+..
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 3445589999998888888899999999999999999888876 67799994 5543
No 117
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=6e-07 Score=52.01 Aligned_cols=57 Identities=14% Similarity=0.319 Sum_probs=46.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC-cEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~-~~~~~~~~ 58 (69)
.+++|+.||.+++|+..+-..+.....|.+.|..+.|+|++.++++-+. ...+|..+
T Consensus 158 ~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~ 215 (398)
T KOG0771|consen 158 KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVN 215 (398)
T ss_pred EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEec
Confidence 4789999999999998766656666788899999999999998887543 57777644
No 118
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.37 E-value=7.5e-07 Score=53.31 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=41.7
Q ss_pred EEEEEeCCCcEEEEECCCC---ceEEEEeCCCC--CCeEEEEcCCCcEEEEcC--CcEEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSG---KEVASWMSFDT--EPPVIKWTPGSLMFVTGS--SELSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~---~~~~~~~~~~~--~v~~v~~~~~~~~~~s~~--~~~~~~~ 56 (69)
.++.|+.||.|.+|+.... .....-..|.. .|.|+.|+++++.++|-+ ....+|.
T Consensus 331 ~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 331 LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 5788999999999997442 22344467877 899999999999998864 4466664
No 119
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=2.4e-07 Score=56.94 Aligned_cols=63 Identities=24% Similarity=0.438 Sum_probs=52.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 63 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~ 63 (69)
+++++|++|..+++||...|+....+.+|.+++..+.|.|....+++|+.+..+-.||++++.
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 368899999999999999999888999999999999999998888888666555555565443
No 120
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.35 E-value=3.3e-06 Score=47.74 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=49.9
Q ss_pred CEEEEEeCCCcEEEEECCCCce---EEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCCcCc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKE---VASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSKLGA 64 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~---~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~~~~ 64 (69)
+++.+.+-|.++.|||+.++.. .+++-.|++.|..++|...+ .+|+|.+.+..+..||++.+++
T Consensus 164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH 231 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH 231 (364)
T ss_pred ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence 3678889999999999988633 57789999999999999754 5788876665556677776654
No 121
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.35 E-value=1.7e-06 Score=50.33 Aligned_cols=57 Identities=18% Similarity=0.457 Sum_probs=45.7
Q ss_pred EEEEEeCCCcEEEEECCCCc---------eEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGK---------EVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~---------~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~ 58 (69)
.+++|+.|..|++|-+..+. .+..+..|...|+++.|+|++..++|++. .+.+|...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 57899999999999986532 13356789999999999999999999844 57788644
No 122
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.33 E-value=1.1e-06 Score=50.71 Aligned_cols=64 Identities=17% Similarity=0.392 Sum_probs=50.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCccc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYV 66 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 66 (69)
.|++|..|+.|.+||++++.++.... -+-+.+.++|+|....|++++++-+++.+|++.|.+..
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred heeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccc
Confidence 36788899999999999987765432 12234688999988889999999999999999887643
No 123
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.33 E-value=6.6e-06 Score=51.51 Aligned_cols=54 Identities=19% Similarity=0.487 Sum_probs=43.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--C-CcEEEE
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--S-SELSFW 55 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~-~~~~~~ 55 (69)
+++++++.|++|++||+.++..+..+. -+.++..++|+|.+.+++++ | ..+.+|
T Consensus 589 rWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 589 RWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred cEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 579999999999999999998665553 34567899999999999997 3 236666
No 124
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.31 E-value=1.1e-05 Score=44.29 Aligned_cols=55 Identities=11% Similarity=0.078 Sum_probs=40.2
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEE-EEcCC--cEEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF-VTGSS--ELSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~s~~~--~~~~~~~ 57 (69)
.+++++.|+.|.+||..+++....+..+.. +.++.|+|++..+ ++++. .+.+|..
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~ 60 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDL 60 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEEC
Confidence 578899999999999988887666665544 5679999998754 55543 4555543
No 125
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.31 E-value=1.2e-06 Score=54.35 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=47.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
|+++.+.|.++.++|..+++.+.+..+|...|+.+.|.++...+++.+++ |.+|.
T Consensus 655 Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 655 YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred EEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 78888999999999999999888889999999999999998777776555 55664
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=8.4e-06 Score=46.11 Aligned_cols=56 Identities=20% Similarity=0.421 Sum_probs=45.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~ 58 (69)
.+++|+-||.|+.+|+.+++ ...+..|.+++.|+.+++....+++| |..+.+|.+.
T Consensus 67 ~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 67 TIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred eEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence 46788888888888887776 56778899999999999877777777 6678888765
No 127
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=2.4e-06 Score=51.28 Aligned_cols=54 Identities=13% Similarity=0.388 Sum_probs=44.7
Q ss_pred EEEEEeCCCcEEEEECCCC--------ceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEE
Q 035275 2 FVISGSGDGSVYAWSVRSG--------KEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFW 55 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~--------~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~ 55 (69)
.+++++.||.+++|++... +++..+.+|.++|.|+.+.+.+..+.++ |+.|+.|
T Consensus 308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 4789999999999999321 3567889999999999999999888888 5557777
No 128
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.30 E-value=4.9e-06 Score=50.96 Aligned_cols=60 Identities=17% Similarity=0.345 Sum_probs=52.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
.++|++.||+|++||+...+.+.++..|...+=.++.+|.-..+.+|+.+.+++..|+..
T Consensus 227 ~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 227 RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 578999999999999988877888889998888888899988999999998888777654
No 129
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.29 E-value=3e-06 Score=52.21 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=48.0
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
++++ ..|.+++||+.+++.+..+.+|...|.++.|+.++.++++++.+..+.++|.+
T Consensus 144 l~s~-a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 144 LASG-AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred EEec-cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence 4444 45889999999999999999999999999999999999998777666656654
No 130
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.27 E-value=4.5e-06 Score=50.59 Aligned_cols=57 Identities=25% Similarity=0.479 Sum_probs=50.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~ 58 (69)
++++|++||...+|+-.++..+..+.+-...+.|++-.|...+++++ |..+.||.+.
T Consensus 638 yiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiDstiKIwsp~ 696 (758)
T KOG1310|consen 638 YIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGIDSTIKIWSPE 696 (758)
T ss_pred eeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCccceEEeccc
Confidence 78999999999999999999888998888999999999998888876 6668898754
No 131
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.27 E-value=2.5e-06 Score=50.31 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=42.5
Q ss_pred EEEEEeCCCcEEEEECCCC--c--eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSG--K--EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~--~--~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
++++++-|++++|||++.- + +......|+..|.++-|+|.+..+++.+.+ |++|.
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 6899999999999999753 2 234557899999999999987767776554 66653
No 132
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.26 E-value=1.6e-06 Score=50.57 Aligned_cols=58 Identities=19% Similarity=0.474 Sum_probs=44.0
Q ss_pred EEEEEeCCCcEEEEECCCCc-------eEEEEeCCCCCCeEEEEcCC-CcEEEEc--CCcEEEEcCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGK-------EVASWMSFDTEPPVIKWTPG-SLMFVTG--SSELSFWIPDL 59 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~-------~~~~~~~~~~~v~~v~~~~~-~~~~~s~--~~~~~~~~~~~ 59 (69)
-++||++|.+|.+|.+..+. +...+.+|..+|.-|+|+|- .++++|+ |..+.+|....
T Consensus 96 vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t 163 (472)
T KOG0303|consen 96 VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT 163 (472)
T ss_pred eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC
Confidence 47999999999999996542 46678999999999999985 3445554 44577776543
No 133
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.26 E-value=2.9e-06 Score=48.53 Aligned_cols=57 Identities=26% Similarity=0.420 Sum_probs=47.0
Q ss_pred CEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275 1 MFVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP 57 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~ 57 (69)
++|++|+.||.|.+||++. +..+..+..|..-++.|+++|--.++++++++..+-.+
T Consensus 310 ~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~ 367 (406)
T KOG2919|consen 310 EILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYP 367 (406)
T ss_pred ceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceeecCC
Confidence 4689999999999999987 56566777888899999999998888888777655443
No 134
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.26 E-value=7.2e-06 Score=46.43 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=26.4
Q ss_pred EEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCC
Q 035275 23 VASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 23 ~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~ 61 (69)
+..+..|.+.|+.++|.|.. ..+++++.+...-.||++.
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred eehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 34556799999999999864 5677775554444444443
No 135
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.26 E-value=1.1e-06 Score=52.02 Aligned_cols=54 Identities=19% Similarity=0.333 Sum_probs=45.2
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
+-.|...|+|.+|......++..+..|.++|.++++.++|..+++++-+ +.||.
T Consensus 266 ih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD 321 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD 321 (545)
T ss_pred EEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence 3467788999999998888888888999999999999999998887554 55653
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.25 E-value=1.3e-06 Score=53.18 Aligned_cols=57 Identities=21% Similarity=0.482 Sum_probs=45.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEE--EeCCCCCCeEEEEcCC-CcEEEEcCCc--EEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVAS--WMSFDTEPPVIKWTPG-SLMFVTGSSE--LSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~--~~~~~~~v~~v~~~~~-~~~~~s~~~~--~~~~~~~ 58 (69)
.|++++.|.++++||+..++.... ..+|.+.+..++|.|. ...|++|+.+ +.+|.-.
T Consensus 114 ~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 114 LLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred eEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 478999999999999988876544 6899999999999985 4678888554 6666543
No 137
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=1.8e-06 Score=47.77 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=43.1
Q ss_pred EEEEEeCCCcEEEEECCCCce--EEEEeCCCCCCeEEEEcCCC--cEEEEc--CCcEEEEcCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGS--LMFVTG--SSELSFWIPDL 59 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~--~~~~~~~~~~v~~v~~~~~~--~~~~s~--~~~~~~~~~~~ 59 (69)
.|+|++.||+|.||....++- ......|.+.|++++|-|.+ .+++++ |+++.+..++.
T Consensus 72 iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~ 135 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS 135 (299)
T ss_pred EeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcC
Confidence 589999999999999887741 23446799999999999864 566665 55566655543
No 138
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.24 E-value=7e-07 Score=52.03 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=52.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 63 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~ 63 (69)
++++.+.|+.+.+|+++..+...++.+|.+.|.++.|......+++++.+..+-.||+.+..
T Consensus 233 ~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~ 294 (459)
T KOG0288|consen 233 HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY 294 (459)
T ss_pred eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence 56778889999999999998888899999999999998776668898888888788877643
No 139
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.23 E-value=3.8e-06 Score=50.45 Aligned_cols=55 Identities=16% Similarity=0.324 Sum_probs=40.1
Q ss_pred EEEEEeCCCcEEEEECCCCceE-EEE-----eCCCCCCeEEEEcCCCcEEEEc--CCcEEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEV-ASW-----MSFDTEPPVIKWTPGSLMFVTG--SSELSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~-~~~-----~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~ 56 (69)
.+++++.||++++||+...+.. ..+ .+.+-++..++|+|++..||+| |+.|.+|.
T Consensus 283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWD 345 (641)
T ss_pred ceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeee
Confidence 4789999999999999765432 222 2233456788999999999988 45577776
No 140
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.23 E-value=3.5e-06 Score=50.49 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=46.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~ 60 (69)
+|.+++++|.|.+||+....+...+ ..|.+++..+.|+|.. .++++.+-+..|.++|+.
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 4678899999999999765555554 7899999999999964 567777777777777765
No 141
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.23 E-value=5.4e-06 Score=51.39 Aligned_cols=52 Identities=12% Similarity=0.329 Sum_probs=44.1
Q ss_pred CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCC
Q 035275 9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS 60 (69)
Q Consensus 9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~ 60 (69)
+.++.+||...|..+..+.+|..-|.||+|+.+|..++||+.+ +.+|....+
T Consensus 32 g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 32 GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 4579999999999899999999999999999999999998655 666654443
No 142
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.21 E-value=1.1e-06 Score=50.45 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=48.8
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
++|++.|.++++..+.+|+.++.+.+|..-|+.+.|.+++..+++++.+..+-+|+..
T Consensus 321 iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K 378 (508)
T KOG0275|consen 321 ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK 378 (508)
T ss_pred hhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCc
Confidence 6789999999999999999999999999999999999999999888665444444443
No 143
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.18 E-value=3.2e-05 Score=41.30 Aligned_cols=61 Identities=18% Similarity=0.475 Sum_probs=41.6
Q ss_pred EEEEEeC---CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--------CcEEEEcCCCCCcCc
Q 035275 2 FVISGSG---DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--------SELSFWIPDLSKLGA 64 (69)
Q Consensus 2 ~~~s~~~---d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--------~~~~~~~~~~~~~~~ 64 (69)
+++.++. .|.|.+||..+.+.+... .| ..+..+.|+|++..++++. ..+.||.++.+.+.+
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeecc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence 5666553 367999999876655443 23 3367899999999988763 237788776665444
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.18 E-value=5.2e-06 Score=47.15 Aligned_cols=64 Identities=19% Similarity=0.317 Sum_probs=47.7
Q ss_pred CEEEEEeCCCcEEEEECCCCc----------eEEE-----EeCCCCCCeEEEEcC-CCcEEEEcCCcEEEEcCCCCCcCc
Q 035275 1 MFVISGSGDGSVYAWSVRSGK----------EVAS-----WMSFDTEPPVIKWTP-GSLMFVTGSSELSFWIPDLSKLGA 64 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~----------~~~~-----~~~~~~~v~~v~~~~-~~~~~~s~~~~~~~~~~~~~~~~~ 64 (69)
++++||+.||.+.+||+.... ..+. -.+|...|..+.|-| +..++.+++-+..+-+||.+.+++
T Consensus 57 rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~ 136 (397)
T KOG4283|consen 57 RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE 136 (397)
T ss_pred eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccccee
Confidence 578999999999999996532 1111 135777888888888 567888887787777777777655
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.15 E-value=3.6e-05 Score=45.43 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=47.8
Q ss_pred EEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCC-cEEEEcCC--cEEEEcCCCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGS-LMFVTGSS--ELSFWIPDLSKL 62 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~--~~~~~~~~~~~~ 62 (69)
.++++..||.|+-+|.+.. +++.++..|.+.|.++.+++.. .++++++. .+.+|.++....
T Consensus 344 ~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 344 SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred eEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 4778889999999999874 7889999999999999998753 45666544 477887665544
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=2e-05 Score=45.23 Aligned_cols=59 Identities=15% Similarity=0.366 Sum_probs=44.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDLS 60 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~~ 60 (69)
++++|++.|.+|.+|++. |+.+..+......-.-.+.+|+|.+++++ .-++.+|-+-..
T Consensus 200 k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~ 260 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFT 260 (420)
T ss_pred eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEec
Confidence 478999999999999997 77666664444444556789999998876 346888864443
No 147
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.14 E-value=1.6e-06 Score=54.14 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=47.9
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
++.+.+|-.|.++|..+.+.+..+.+|..+|+.+.|||++..+++++.|-.|..||+..
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence 45566777899999998888888899999999999999999999997665555555543
No 148
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.14 E-value=1.8e-05 Score=47.97 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=31.4
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 25 SWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 25 ~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
.+..|++.|.+++|++...++++|+++.++-+||..
T Consensus 181 ~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 181 RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred EEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 567899999999999999999999999888777754
No 149
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.14 E-value=1.6e-05 Score=48.98 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=43.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~ 58 (69)
.|+|++.||.|+.|++ ++..+....+|+.-+.+++..++...++|++ +.++||.-+
T Consensus 192 ~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 192 HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 4789999999999998 6777888889999899999766666666664 457777543
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=2.5e-05 Score=44.49 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=41.7
Q ss_pred CEEEEEeCCCcEEEEECCCCc----eEEEEeCCCCCCeEEEEcC-C-CcEEEEcCCc--EEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGK----EVASWMSFDTEPPVIKWTP-G-SLMFVTGSSE--LSFWI 56 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~----~~~~~~~~~~~v~~v~~~~-~-~~~~~s~~~~--~~~~~ 56 (69)
+.+++|+.|++++|||.+... ....+..|.+.|-.|.|.+ . |..+++++.+ +.||-
T Consensus 26 RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 26 RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 358999999999999975443 2345688999999999964 3 6788887554 66664
No 151
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.13 E-value=1.8e-05 Score=50.34 Aligned_cols=62 Identities=26% Similarity=0.414 Sum_probs=47.4
Q ss_pred CEEEEEeCCCcEEEEECCC----------C--------ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCc
Q 035275 1 MFVISGSGDGSVYAWSVRS----------G--------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~----------~--------~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~ 62 (69)
++|++|++|+.|.+|+... | +....+.+|+.-|..+.|+|+..++++++-+-.+-+||..++
T Consensus 82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence 4899999999999999872 1 024456889999999999999999999865544444555444
No 152
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=1.2e-06 Score=52.05 Aligned_cols=58 Identities=17% Similarity=0.405 Sum_probs=47.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD 58 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~ 58 (69)
.|++||++-|.|.||+-.+++.+.-+.+-.+.|+|+.-+|-..++|++ +.++.||.+-
T Consensus 407 EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 407 EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred ceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 378999999999999998887665566666788999888888788876 6789999873
No 153
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.10 E-value=2.2e-05 Score=45.01 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=45.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEE---eCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASW---MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~ 59 (69)
.+++.|.+...+++||+.+-+..... ..|.+.|.+|.+++.+.+.++++.+..|-+||.
T Consensus 229 efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 229 EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG 290 (430)
T ss_pred ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence 36788888889999999887654433 468999999999999999999966655555553
No 154
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.08 E-value=2.8e-05 Score=43.29 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=42.8
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
++.++.|+.++-||+.+|+....+.+|+.-+.++.--.....+.||.++..+.+||...
T Consensus 129 i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 129 ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT 187 (325)
T ss_pred EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc
Confidence 45556789999999999998888999999999887633333466776654444454443
No 155
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.07 E-value=1.4e-05 Score=45.72 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=48.5
Q ss_pred EEEEEeCCCcEEEEECCC------------C------ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRS------------G------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~------------~------~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
++++|+.|..|++.|+.. + ..+..+-.|...|+++.|+|...++++++.+-++-++|+.+
T Consensus 126 lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK 203 (430)
T KOG0640|consen 126 LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSK 203 (430)
T ss_pred EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEeccc
Confidence 689999999999999861 1 12455677889999999999999999998887777777654
No 156
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.06 E-value=2.2e-06 Score=53.88 Aligned_cols=55 Identities=16% Similarity=0.379 Sum_probs=46.8
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDLS 60 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~~ 60 (69)
+++++.|.-|.+|-+.++.++..+.+|++.|+.++|+|.. .++ ++..+||.|+..
T Consensus 247 iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~ 302 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLE 302 (1113)
T ss_pred hhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccccc
Confidence 5788999999999999999888899999999999999975 333 567999988743
No 157
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.06 E-value=3.1e-05 Score=43.88 Aligned_cols=62 Identities=24% Similarity=0.350 Sum_probs=44.3
Q ss_pred EEEEEeCCCcEEEEECCCCc-eEEE-EeCCCCCCeEEEEcC-CCcEEEEcCCcEEEEcCCCCCcC
Q 035275 2 FVISGSGDGSVYAWSVRSGK-EVAS-WMSFDTEPPVIKWTP-GSLMFVTGSSELSFWIPDLSKLG 63 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~-~~~~-~~~~~~~v~~v~~~~-~~~~~~s~~~~~~~~~~~~~~~~ 63 (69)
.+.+|++|+.+..||.+..+ .+.+ .+.|...|.++.-+| ....+++|+.+-++.+||.+.+.
T Consensus 180 lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 180 LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 57899999999999998433 2333 467888889998775 46778888666555555555433
No 158
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=5.8e-05 Score=41.77 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=40.2
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEe--CCC-----CCCeEEEEcCCCcEEEEc--CCcEEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWM--SFD-----TEPPVIKWTPGSLMFVTG--SSELSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~--~~~-----~~v~~v~~~~~~~~~~s~--~~~~~~~~ 56 (69)
.+++|++|.+|++||++....+..+. -|. ..|..++..|.+.+++++ |...+++.
T Consensus 196 m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 196 MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 47899999999999998765544441 222 457788889999999998 44455543
No 159
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.02 E-value=2.9e-05 Score=49.40 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=49.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEE-EEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCCCcCccc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKLGAYV 66 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~ 66 (69)
+++++.|+|..+++|++++++... ..-+|.+++-.+.|.|. .+++++.+ .++|-++...++.+.
T Consensus 188 ~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~ 254 (967)
T KOG0974|consen 188 RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYD 254 (967)
T ss_pred cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhh
Confidence 478999999999999999987655 55789999988889988 66776554 777766666555544
No 160
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.00 E-value=1.7e-05 Score=48.86 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=39.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCCCCcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDLSKLG 63 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~~~~~ 63 (69)
.+++|+.|..|++|.- ++.+..+.+|+..|+.+.+-++..++.++ |..++.|..+.+-+.
T Consensus 153 ~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~ 213 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLL 213 (745)
T ss_pred cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceee
Confidence 4677888888888775 45566778888888888877765544333 445666655444333
No 161
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=97.97 E-value=3.1e-05 Score=44.55 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=44.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC--CCcEEEEcCCcEEEEcCCCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP--GSLMFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~s~~~~~~~~~~~~~~~ 62 (69)
.++++...|.|++||..+++.+..+.++...++.++|.. ....+.+++.+..+.+||++..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~ 104 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ 104 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc
Confidence 367888889999999999888888899988888888865 3344555555544445555543
No 162
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=97.96 E-value=3.4e-06 Score=53.07 Aligned_cols=56 Identities=21% Similarity=0.431 Sum_probs=49.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
+++++|++|..++||...++..+....+|.+.+..++.+.+..++++++.+ |++|.
T Consensus 203 ~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 203 RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 368999999999999999888888899999999999988888889988887 77773
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.95 E-value=1.8e-05 Score=44.88 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=39.8
Q ss_pred eCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCCCc-EEEEcCCcEEEEcCCCCC
Q 035275 7 SGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSL-MFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 7 ~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~-~~~s~~~~~~~~~~~~~~ 61 (69)
..|+++..||.++-.....+ ..|..+++.+.|+|+.. .+++++.+..+.+||.++
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK 246 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence 45789999999976655555 57888899999999865 566776665555555554
No 164
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.93 E-value=0.0001 Score=44.72 Aligned_cols=57 Identities=25% Similarity=0.454 Sum_probs=42.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
.++.|+.||.|.+||...+.. .+....-....++|+|++.+++.+++...++.||+.
T Consensus 273 kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 273 KLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred eEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 578899999999999876632 222233345789999999999998877666666653
No 165
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.91 E-value=0.00015 Score=43.80 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=44.0
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD 58 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~ 58 (69)
+++|..+|.|.||+..+.+...+...|++.|.++..-.++.++ ||..+.++-.||
T Consensus 260 viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd 314 (626)
T KOG2106|consen 260 VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD 314 (626)
T ss_pred EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEecc
Confidence 6789999999999998777666667999999999888887655 486666655555
No 166
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.91 E-value=0.00019 Score=42.66 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=44.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCC--CCCeEEEEcCCCcEEEEcC--CcEEEEcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFD--TEPPVIKWTPGSLMFVTGS--SELSFWIP 57 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~~s~~--~~~~~~~~ 57 (69)
.||++++.||...+.|..++..++...... -.+.+.+|+|++.+++++. ..+.||..
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 489999999999999999998765543322 2357999999999999984 45777753
No 167
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.90 E-value=8.7e-05 Score=46.61 Aligned_cols=57 Identities=21% Similarity=0.343 Sum_probs=46.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEe---CCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWM---SFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 57 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~ 57 (69)
++++++++|..|+|||+.+++..+.++ +|.+....+...|.+..+++++.+ +.++.+
T Consensus 609 k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 609 KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence 478999999999999999999888774 566778889999999999987555 555443
No 168
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=5.7e-05 Score=46.31 Aligned_cols=41 Identities=37% Similarity=0.698 Sum_probs=33.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL 43 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~ 43 (69)
++++|+.||+|++|.+.++..+..+. ..+.|.||+|+|...
T Consensus 414 wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~ 454 (733)
T KOG0650|consen 414 WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSD 454 (733)
T ss_pred eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCC
Confidence 68999999999999999998765542 334689999998653
No 169
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.88 E-value=9.1e-06 Score=45.42 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=46.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEE-EEeCCCCCCeEEEEcCC-CcEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~-~~~~~~~~v~~v~~~~~-~~~~~s~~~~~~~~~~~~~ 60 (69)
.+++|++||.+.+||.+...... .+..|.+.+..+-|+|. ...+.+++++..+|.||..
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 47889999999999998774433 35789999999999985 4566677778888888765
No 170
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.87 E-value=0.00014 Score=27.30 Aligned_cols=36 Identities=6% Similarity=0.090 Sum_probs=26.0
Q ss_pred eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275 22 EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP 57 (69)
Q Consensus 22 ~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~ 57 (69)
....+..|...+.++.|.+....+++++.+..+..|
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEc
Confidence 345566788889999999988888887655444444
No 171
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.87 E-value=0.00016 Score=38.64 Aligned_cols=51 Identities=29% Similarity=0.547 Sum_probs=35.7
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC-----CcEEEEcC
Q 035275 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS-----SELSFWIP 57 (69)
Q Consensus 4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~-----~~~~~~~~ 57 (69)
+.|..++.|.+||.+ ++.+..+ +...+..+.|+|++.+++.++ +++.+|..
T Consensus 77 i~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 77 IYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred EEccCCcccEEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 445566789999996 4445555 345678999999999888763 23666554
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.87 E-value=3e-05 Score=44.53 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=46.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~ 61 (69)
+++.|+.-|-|++-|+.++.....+.+|...|+.+++.|.. +++++++.+-.+.+|+++.
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 56777778899999999888888999999999999999965 5666776654444444543
No 173
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=0.00019 Score=42.73 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=49.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 63 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~ 63 (69)
.+++.+.|.++++||+..+..+.... .+..+.++...|.+..+..|..+..||+.++..+.
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred eEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence 57899999999999998887655443 44567899999999888888889999988776655
No 174
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.00011 Score=42.38 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=45.8
Q ss_pred CEEEEEeCCCcEEEEEC---CCCc-----eEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCCC
Q 035275 1 MFVISGSGDGSVYAWSV---RSGK-----EVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDLS 60 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~---~~~~-----~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~~ 60 (69)
+++++++..-.|++|.. ..|. ..-++.+|...|...+|+++...+++. |+.+++|..|++
T Consensus 241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 46777777778999997 2332 245789999999999999998887776 556888876654
No 175
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.82 E-value=0.00013 Score=46.64 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=48.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCcc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAY 65 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 65 (69)
++++|+--+.|.+|+....+....+.+|.+.+..+.++.++..+++.+++..+.+|++++.+..
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred EEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc
Confidence 5788888899999999744434468999999999999999999998866644444545554443
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=4.6e-05 Score=43.85 Aligned_cols=53 Identities=25% Similarity=0.422 Sum_probs=42.1
Q ss_pred CCcEEEEECCCCce-EEEE-eCCCCCCeEEEEcCC-CcEEEEcCCcEEEEcCCCCC
Q 035275 9 DGSVYAWSVRSGKE-VASW-MSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 9 d~~v~~wd~~~~~~-~~~~-~~~~~~v~~v~~~~~-~~~~~s~~~~~~~~~~~~~~ 61 (69)
+-.|.+||++.... +.++ ..|..-|++++|.|+ .++++||+.+..+-++|++.
T Consensus 142 ~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 142 DASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred ceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 34689999988765 6665 689999999999986 56889998887777777653
No 177
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.81 E-value=0.00014 Score=44.05 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=49.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA 64 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 64 (69)
.+++.+.|.+|.+||.........+ .+..+...++|.++|..++.|.....+..+|++.++.
T Consensus 223 l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 223 LLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred eEEEecccceEEEeeccccccccee-eecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 5788999999999999876654444 3456778999999999999998888888888776554
No 178
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.81 E-value=0.00017 Score=41.89 Aligned_cols=56 Identities=14% Similarity=0.358 Sum_probs=42.7
Q ss_pred EEEEEeCCCc-EEEEECCCCceEEEEe-C-CCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275 2 FVISGSGDGS-VYAWSVRSGKEVASWM-S-FDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~-v~~wd~~~~~~~~~~~-~-~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~ 57 (69)
+++++++.|+ |+++.+.+|..+..+. + ....|..++|+|+..++++++.. +.++..
T Consensus 187 llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 187 LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 6899999996 6799999998887773 2 23556799999999988877554 555543
No 179
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.77 E-value=7.4e-05 Score=43.80 Aligned_cols=59 Identities=22% Similarity=0.410 Sum_probs=43.9
Q ss_pred EEEEEeCCCcEEEEECC--------C-----Cc---eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVR--------S-----GK---EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~--------~-----~~---~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
.++||+++|.|.+|-.. + .+ ....+.+|...+..++|+|++.++++++.+..+.+||.+
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~ 153 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH 153 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence 58999999999999876 2 10 133457899999999999999999988655444444443
No 180
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=5.1e-05 Score=46.69 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=43.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 51 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~ 51 (69)
.+++|...|+|.+||...+........|.+.|.+++..+++..+.+++-+
T Consensus 217 tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd 266 (691)
T KOG2048|consen 217 TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVD 266 (691)
T ss_pred cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCC
Confidence 58999999999999999998877888899999999999988777776544
No 181
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00013 Score=44.89 Aligned_cols=59 Identities=17% Similarity=0.297 Sum_probs=48.4
Q ss_pred EEEEEeCCCcEEEEECCCC-----ceEEEE--eCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSG-----KEVASW--MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~-----~~~~~~--~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
.+++++.|.+|++|.++.. ...+++ ..|+.+|..+.|-.+...++++|+-+.+|.+-+.
T Consensus 749 SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFig 814 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIG 814 (1034)
T ss_pred ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeeccccc
Confidence 4789999999999999653 223444 6899999999999888899999999999986554
No 182
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.00036 Score=41.72 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=49.0
Q ss_pred EEEEEeCCCcEEEEECCCC--ceEEEEeCCCCCCeEEEEcCCCc-EEEEcCCcEEEEcCCCCCcCc
Q 035275 2 FVISGSGDGSVYAWSVRSG--KEVASWMSFDTEPPVIKWTPGSL-MFVTGSSELSFWIPDLSKLGA 64 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~--~~~~~~~~~~~~v~~v~~~~~~~-~~~s~~~~~~~~~~~~~~~~~ 64 (69)
.+++++.|+++.+|.++-. ..+.++.-...+|.+..|.|++. .+++++....++.||+...+.
T Consensus 227 lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 227 LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 5789999999999999643 23455555677889999999998 777888888888888765443
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.70 E-value=0.00023 Score=41.11 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=47.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC-cEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~-~~~~~~~~~~~ 61 (69)
.++.|+....+-+|....+.++..+.+|.+.|+.++|.++++.+.+|.. +-.|-.||++.
T Consensus 222 ~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 222 TLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred ceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 5778888888888888888888888999999999999999999888733 33444444543
No 184
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.70 E-value=0.00022 Score=42.50 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=38.3
Q ss_pred EEEEEeCCCcEEEEECCCCc----eEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEE
Q 035275 2 FVISGSGDGSVYAWSVRSGK----EVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFW 55 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~----~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~ 55 (69)
.+++|...|.|-+||+.+.. .......|.++|.++.|+|.. ..+.+++.+..+.
T Consensus 202 lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 202 LVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred EEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 58899999999999995332 244567899999999999853 3455544443333
No 185
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.00068 Score=38.91 Aligned_cols=62 Identities=21% Similarity=0.359 Sum_probs=42.8
Q ss_pred CEEEEEeCCCcEEEEECCC--Cc-------eEEEEeCCCCCCeEEEEcCC--CcEEEEcCCc--EEEE-cCCCCCc
Q 035275 1 MFVISGSGDGSVYAWSVRS--GK-------EVASWMSFDTEPPVIKWTPG--SLMFVTGSSE--LSFW-IPDLSKL 62 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~--~~-------~~~~~~~~~~~v~~v~~~~~--~~~~~s~~~~--~~~~-~~~~~~~ 62 (69)
+-+++++.|+++.||.-.. .+ ..+.+...++.|..|+|.|. +.++++++.+ ++|+ .+|+-++
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence 3589999999999999732 11 23455677888999999985 5778877555 5555 3444433
No 186
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.67 E-value=0.0013 Score=36.11 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=37.0
Q ss_pred EEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCC
Q 035275 5 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDL 59 (69)
Q Consensus 5 s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~ 59 (69)
+...++.+.+||..+++....+ .+...+.++.|+|++..++++ +.++.+|..+.
T Consensus 224 ~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 224 ALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred EcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 3344567999999887755444 234567899999999877664 34577766543
No 187
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.67 E-value=0.00027 Score=42.06 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=47.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEE----E------------E--eCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVA----S------------W--MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 63 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~----~------------~--~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~ 63 (69)
+.++++.+|.|.=|++.+++... . . ..|.+.+.+++.++++..+++++.+..+.+|+..+++
T Consensus 156 ~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e 235 (479)
T KOG0299|consen 156 RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE 235 (479)
T ss_pred ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc
Confidence 67899999999999998875220 0 1 2567778999999999999999777666556666555
Q ss_pred c
Q 035275 64 A 64 (69)
Q Consensus 64 ~ 64 (69)
.
T Consensus 236 h 236 (479)
T KOG0299|consen 236 H 236 (479)
T ss_pred h
Confidence 4
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.00037 Score=41.32 Aligned_cols=55 Identities=16% Similarity=0.414 Sum_probs=42.9
Q ss_pred EEEEEeCCCcEEEEECCCCc-----------------------eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGK-----------------------EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~-----------------------~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
.+++|+++-.|.+|.+.... .+..+.+|...++.|.|+|...++++++-+ +.+|.
T Consensus 306 ~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 306 TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 37899999999999985311 245678999999999999999998887554 66664
No 189
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.59 E-value=0.00022 Score=44.32 Aligned_cols=59 Identities=24% Similarity=0.483 Sum_probs=44.3
Q ss_pred EEEEEeCCCcEEEEECCCCc------------------------eE-------EEEeCCCCCCeEEEEcCCCcEEEEc--
Q 035275 2 FVISGSGDGSVYAWSVRSGK------------------------EV-------ASWMSFDTEPPVIKWTPGSLMFVTG-- 48 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~------------------------~~-------~~~~~~~~~v~~v~~~~~~~~~~s~-- 48 (69)
+++|+++|..|++|.+.-+. .+ ..+++|+.=|.++.|+|.+..+.++
T Consensus 208 ~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa 287 (764)
T KOG1063|consen 208 LLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA 287 (764)
T ss_pred EEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc
Confidence 58999999999999873221 01 1135899999999999998665554
Q ss_pred CCcEEEEcCCCC
Q 035275 49 SSELSFWIPDLS 60 (69)
Q Consensus 49 ~~~~~~~~~~~~ 60 (69)
|..+++|.++.+
T Consensus 288 DksmiiW~pd~~ 299 (764)
T KOG1063|consen 288 DKSMIIWKPDEN 299 (764)
T ss_pred CcceEEEecCCc
Confidence 777999988765
No 190
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.00038 Score=42.75 Aligned_cols=60 Identities=27% Similarity=0.365 Sum_probs=43.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEE------eCCCCC-----CeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASW------MSFDTE-----PPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~------~~~~~~-----v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
++++|..+|.|.+||.++...+..+ ..|.+. |..+.|+.++..++.|..+..++++|++.
T Consensus 189 Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 189 LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred eEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence 6788888999999999876544333 234443 88999998899999886665555555553
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.54 E-value=0.00098 Score=37.12 Aligned_cols=54 Identities=22% Similarity=0.631 Sum_probs=42.1
Q ss_pred EEEEEeC-CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEc--CCcEEEE
Q 035275 2 FVISGSG-DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTG--SSELSFW 55 (69)
Q Consensus 2 ~~~s~~~-d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~--~~~~~~~ 55 (69)
++++++. |+.+.+|+...+.....+..|...+.++.|+|++. .++++ +..+.+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w 226 (466)
T COG2319 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226 (466)
T ss_pred EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence 4566664 89999999988777777888999999999999886 55553 4456666
No 192
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.53 E-value=0.00084 Score=40.77 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275 30 DTEPPVIKWTPGSLMFVTGSSELSFWIP 57 (69)
Q Consensus 30 ~~~v~~v~~~~~~~~~~s~~~~~~~~~~ 57 (69)
+.++.+|+|+|++.++|.++.+-.++++
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 6789999999999999998766444443
No 193
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.49 E-value=0.00022 Score=28.13 Aligned_cols=16 Identities=44% Similarity=0.960 Sum_probs=14.5
Q ss_pred CEEEEEeCCCcEEEEE
Q 035275 1 MFVISGSGDGSVYAWS 16 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd 16 (69)
+++++++.|+.|++||
T Consensus 24 ~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 24 NFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred ccceeeCCCCEEEEEC
Confidence 4689999999999997
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.00088 Score=40.83 Aligned_cols=56 Identities=16% Similarity=0.337 Sum_probs=40.3
Q ss_pred EEEEEeCCCcEEEEECCC------C----ceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRS------G----KEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~------~----~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~ 57 (69)
.+.+|+-||.|+.|++.. . .....+.+|.+.+-.+.+++....+++++. .++.|.+
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP 425 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence 578999999999996532 1 123457899999989999987666777644 4555543
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.48 E-value=0.00029 Score=43.14 Aligned_cols=58 Identities=24% Similarity=0.226 Sum_probs=42.3
Q ss_pred EEEEEeCCCcEEEEECC-CCceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVR-SGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~-~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~ 60 (69)
.+.+++ |..+++|... ...++..+..+...+.+++|||-. ..|++++.+.++.+||+.
T Consensus 413 ~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 413 NFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred eeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 345555 8899999987 566677777888889999999965 466777666555555543
No 196
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.0015 Score=41.83 Aligned_cols=58 Identities=12% Similarity=0.195 Sum_probs=43.2
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEe--CCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDL 59 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~ 59 (69)
.++....|+.|++|+.........+. .+...+.+++|+|.|..+|++ ++.+.+|.++.
T Consensus 202 ~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 202 TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 35556678899999987766555542 344448899999999999988 55688888774
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.0018 Score=41.05 Aligned_cols=61 Identities=16% Similarity=0.402 Sum_probs=46.7
Q ss_pred CEEEEEeCCCcEEEEECCC--C--ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRS--G--KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSK 61 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~--~--~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~~ 61 (69)
++++++..||+|.+|.--. . ...+.+.-|...|.++.|+++|..+.||+.+ .-.|.....+
T Consensus 218 ~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 218 RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 4789999999999997522 2 2345667798999999999999999999776 5556554444
No 198
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.0038 Score=37.58 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=38.9
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCC--eEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEP--PVIKWTPGSLMFVTGSSELSFWIPDL 59 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v--~~v~~~~~~~~~~s~~~~~~~~~~~~ 59 (69)
.++..+.+|.|.+||++....+..+... +.+ ..++.++++..+|+|+....+-+++.
T Consensus 358 ~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred EEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEecc
Confidence 3556667899999999887655555433 223 35566788899999987755555553
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.40 E-value=0.00063 Score=40.85 Aligned_cols=55 Identities=11% Similarity=0.291 Sum_probs=39.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWI 56 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~ 56 (69)
+|+++++.|..++|||++.-..+.+... ..+...+++|..+.+.++-+..+.+|.
T Consensus 306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 306 RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred cEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeeeeeh
Confidence 4789999999999999987654444433 344567888866655555577788984
No 200
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.39 E-value=0.00015 Score=43.99 Aligned_cols=58 Identities=12% Similarity=0.224 Sum_probs=38.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceE--EEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEV--ASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD 58 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~ 58 (69)
+.|++|++-.++.|||+....+- ..+....-.+..++.+|+..+..++ |++|.+|...
T Consensus 478 rtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 478 RTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred ceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence 35788988889999999765432 2233333446778899997765554 5567777544
No 201
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.38 E-value=0.0013 Score=43.45 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=38.2
Q ss_pred EEEEEeCCCcEEEEECCCC--c--eE---EEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRSG--K--EV---ASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~--~--~~---~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~ 57 (69)
+++||+.||+|++|+...- . .. ..+.....++.++.+.+.+..+|.+..+ +.+...
T Consensus 1063 ~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1063 LFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRI 1127 (1431)
T ss_pred eEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEc
Confidence 6899999999999998642 1 11 2233345778899998888777766444 444433
No 202
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.36 E-value=0.00048 Score=42.93 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=43.4
Q ss_pred CEEEEEeCCCcEEEEECCCCc----eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGK----EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~----~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
++|++.+.|.++.+|...... .......|+..|=.++|+|++..+++++.| +.+|-
T Consensus 585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 585 RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 589999999999999985432 233467888877888999998889998766 55553
No 203
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.0017 Score=40.38 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=42.6
Q ss_pred EEEEEeCCCcEEEEECCCCceE--EEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEV--ASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
.++.|++||.+...+...+... ..++-.++++.+++|+|++..++.|+.+..|..||..
T Consensus 124 ~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 124 ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 3677889997777777666532 3456667999999999999988988766544444443
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.34 E-value=0.00051 Score=42.07 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=32.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS 42 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~ 42 (69)
.+++|++|.+.++||.. |..+..-..|..+|++++|+|+.
T Consensus 200 lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~ 239 (737)
T KOG1524|consen 200 IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK 239 (737)
T ss_pred ceeecCCceeEEeeccc-CcccccCChhccceeeeeecccc
Confidence 57899999999999985 55565666788888888888883
No 205
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.0026 Score=38.88 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=50.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~ 59 (69)
++-|++.|+.+..|+.......+.+.+-...+..+.++|++.++++++.++.+|..+.
T Consensus 116 ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~ik~~~~~~ 173 (541)
T KOG4547|consen 116 CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASRQIKVLDIET 173 (541)
T ss_pred ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccceEEEEEccC
Confidence 5778999999999999988878888877777889999999999999999999886543
No 206
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.002 Score=36.21 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=43.9
Q ss_pred CEEEEEeCCCcEEEEECCCC---------c-eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSG---------K-EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~---------~-~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~ 59 (69)
++++.|+.+|.|.+..+.+- + .+....+|++++..+.|.. ..++..+|+.++-|.|+.
T Consensus 23 ~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-~~Lls~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 23 QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-DFLLSGGDGLVYGWEWNE 90 (325)
T ss_pred eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-hheeeccCceEEEeeehh
Confidence 47899999999999987541 1 2334478999999999983 345555688899999874
No 207
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.29 E-value=0.0026 Score=35.40 Aligned_cols=51 Identities=22% Similarity=0.504 Sum_probs=39.6
Q ss_pred eCCCcEEEEECCC-CceEEEEeCCCCCCeEEEEcCCCcEEEEcC---CcEEEEcC
Q 035275 7 SGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGS---SELSFWIP 57 (69)
Q Consensus 7 ~~d~~v~~wd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~---~~~~~~~~ 57 (69)
..|+.+.+|+... ......+..|...+..+.|+|++..+++++ ..+.+|..
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEc
Confidence 3388999999987 566777889999999999999998777664 34556543
No 208
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.28 E-value=0.0012 Score=40.59 Aligned_cols=56 Identities=18% Similarity=0.437 Sum_probs=37.9
Q ss_pred EEEEEeCCCcEEEEECCCCce--EE----EEeCCCCCCeEEEEcCCCc--EEEE--cCCcEEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKE--VA----SWMSFDTEPPVIKWTPGSL--MFVT--GSSELSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~--~~----~~~~~~~~v~~v~~~~~~~--~~~s--~~~~~~~~~~ 57 (69)
.++.|..+|.|.+||+..+.. .. ....|..++..+.|..+.. -+++ .|+.++.|..
T Consensus 257 ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 257 LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence 588999999999999976543 22 2256788888888864321 1333 3667777743
No 209
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.00031 Score=45.37 Aligned_cols=51 Identities=8% Similarity=0.217 Sum_probs=35.9
Q ss_pred cEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCC
Q 035275 11 SVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 11 ~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~ 61 (69)
.|.+||++.. .++..+.+|...|.++.|++.. .+++|+..|.++..|+.+.
T Consensus 233 viqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 233 VIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred eeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 5889998754 3456678999999999999876 6666665554444444443
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.0016 Score=42.72 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=47.4
Q ss_pred EEEEEeCCCcEEEEECCCCce--EEEEeCCC--C-CCeEEEEcCCCcEEEEcC-CcEEEEcCCCCCcCcc
Q 035275 2 FVISGSGDGSVYAWSVRSGKE--VASWMSFD--T-EPPVIKWTPGSLMFVTGS-SELSFWIPDLSKLGAY 65 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~--~~~~~~~~--~-~v~~v~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~ 65 (69)
.++||+.||.|.+||++.... ......|. | ..+++..++....+++|+ ..+.||....+.+..+
T Consensus 1271 elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~ 1340 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNII 1340 (1387)
T ss_pred ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhccc
Confidence 379999999999999987422 22333333 3 478999999999999986 6699998777666554
No 211
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0024 Score=38.99 Aligned_cols=51 Identities=6% Similarity=0.236 Sum_probs=40.6
Q ss_pred CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCC-----CcEEEEc---CCcEEEEcCCC
Q 035275 9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-----SLMFVTG---SSELSFWIPDL 59 (69)
Q Consensus 9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~s~---~~~~~~~~~~~ 59 (69)
.+.|++||..+.+.+..+.+|.++|++++|.-. |..+.++ ...+.+|..+.
T Consensus 163 s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 378999999999988899999999999999755 4455544 34588998665
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.21 E-value=0.0016 Score=38.09 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=37.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC---CcEEEE
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS---SELSFW 55 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~---~~~~~~ 55 (69)
+++.+++.||.|.++|+.+.+.+..+..-.. ..++++++++..++.++ .++.++
T Consensus 49 r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp SEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred CEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEe
Confidence 3567778899999999999987777754333 37899999998777663 345543
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.0026 Score=37.48 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=49.8
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEE-EeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
+++.+|..-|.+..+|.+.+..+.+ +.+-.+.+..+...|.+.++++++-+.++.++|...
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 3577888889999999999887766 788899999999999999999987776666665543
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.0055 Score=36.13 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=39.5
Q ss_pred EEEEeCCCcEEEEECCCCce--------------EEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCCCcC
Q 035275 3 VISGSGDGSVYAWSVRSGKE--------------VASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLSKLG 63 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~--------------~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~~~~ 63 (69)
++.|+. +-|.+|..+.... +.+-++| -+|..++|++++..++++ |..+++|.+|.....
T Consensus 156 lavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~ 231 (445)
T KOG2139|consen 156 LAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI 231 (445)
T ss_pred eeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc
Confidence 455555 4499999754211 1111334 568999999999988886 567999998876443
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.14 E-value=0.00025 Score=44.47 Aligned_cols=56 Identities=23% Similarity=0.408 Sum_probs=40.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC-CcEEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS-SELSFWIPD 58 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~-~~~~~~~~~ 58 (69)
+.++||+.|..|.+|...-...+ --+|...|.|+.|+|-...++|++ .+..+|..+
T Consensus 66 krFASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~ 122 (1081)
T KOG1538|consen 66 KRFASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE 122 (1081)
T ss_pred ceeccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhhcchhhccccChh
Confidence 35899999999999997533322 246888899999999777777653 345566543
No 216
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.0041 Score=39.56 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=43.1
Q ss_pred EEEEEeCCCcEEEEECCC------CceEEEE----eCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCC
Q 035275 2 FVISGSGDGSVYAWSVRS------GKEVASW----MSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDL 59 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~------~~~~~~~----~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~ 59 (69)
.+++++.||.+++|.... ....+.. ..|..++....|+.+|..++.+ ++.+.+|.++.
T Consensus 471 ~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 471 RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred eeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 367888999999999832 2222211 2478888999999999877766 77899998876
No 217
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.07 E-value=0.0088 Score=35.02 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=41.1
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLS 60 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~ 60 (69)
+...+.++.|.+|++...+=...+..-.+++..++|+|++..+... +..+.+|..+..
T Consensus 64 lC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 64 LCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred eeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence 3455677899999997666556666566678899999999665544 335777765544
No 218
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.0028 Score=37.75 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=41.5
Q ss_pred CEEEEEeCCCcEEEEECCC------CceEEEEe--CCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRS------GKEVASWM--SFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~------~~~~~~~~--~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
++|++|++|..+.+|+++. .+++ .++ .|..-|.|+.|.....++.+|.....+.+-|++
T Consensus 69 ~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 69 RFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE 135 (609)
T ss_pred eEEeecCCcceeeeechHHHHhhcCCCCc-eeccCccccceEEEEEccCCeeEecCCCcceeEeeecc
Confidence 4799999999999999853 2333 333 455778999999888888888654444443443
No 219
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.0023 Score=41.43 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=46.3
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD 58 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~ 58 (69)
+++|.+-|.+.+|...+.+..+.-..|+.++..++|+|+|..+.+++.- +..|..|
T Consensus 74 La~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5677788899999988777666667899999999999999999999764 6666655
No 220
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.0043 Score=40.86 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=42.7
Q ss_pred EEEEEeCCCcEEEEECCCCce---EEEEeCCCCC--CeEEEEcCCCc-EEEEcCC--cEEEEcCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKE---VASWMSFDTE--PPVIKWTPGSL-MFVTGSS--ELSFWIPDL 59 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~---~~~~~~~~~~--v~~v~~~~~~~-~~~s~~~--~~~~~~~~~ 59 (69)
.++.|..||.|.+||.+...+ +..+..|... |..+.+.++|. .+++++. ++.+|..+.
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 578899999999999976543 4556788876 88899988664 3777754 566665554
No 221
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.03 E-value=0.0018 Score=37.77 Aligned_cols=61 Identities=13% Similarity=0.371 Sum_probs=44.7
Q ss_pred EEEEEeCCCcEEEEECCCCce-EEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKE-VASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLSKL 62 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~~~~ 62 (69)
.++||++|..+.+||+.-.+. ...+.+|.+.+..+++.+--..+.++++ -+.+|.++....
T Consensus 211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 588999999999999964432 3456789998888887765556666644 488888775543
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.95 E-value=0.014 Score=34.62 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=34.1
Q ss_pred EEEEEeCC---CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCC
Q 035275 2 FVISGSGD---GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDL 59 (69)
Q Consensus 2 ~~~s~~~d---~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~ 59 (69)
.++..+.+ ..|.+||+.++... .+....+....++|+|++..++.+ ++...+|.+|.
T Consensus 217 ~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 217 KLAYVSFENKKSQLVVHDLRSGARK-VVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred EEEEEEecCCCcEEEEEeCCCCceE-EEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 34444433 36999999877532 222222233468899999866643 44567787665
No 223
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.95 E-value=0.0055 Score=35.47 Aligned_cols=56 Identities=23% Similarity=0.479 Sum_probs=42.8
Q ss_pred EEEEEeCCCcEEEEECCCCc---eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRSGK---EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~ 57 (69)
.+++|+.|..-++|....+. +...+..+++...+|.|+|.++.|+.+++- +.+|-+
T Consensus 69 rIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~ 129 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYY 129 (361)
T ss_pred ceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEE
Confidence 47899999999999985442 344556788888999999999999988654 445443
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.89 E-value=0.0093 Score=34.50 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=38.0
Q ss_pred CCCcEEEEECCCCc--eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc---EEEEc
Q 035275 8 GDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFWI 56 (69)
Q Consensus 8 ~d~~v~~wd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~---~~~~~ 56 (69)
.-|.|.+-|+.... +...+.+|...|.|++.+.+|.++||++.. |+||.
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFD 210 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEE
Confidence 34678888875433 246678999999999999999999999765 66654
No 225
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.86 E-value=0.0039 Score=36.04 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=41.2
Q ss_pred EEEEeCCCcEEEEECCCCc---eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 3 VISGSGDGSVYAWSVRSGK---EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
++.+-....|.||...... ....+..|+..+.+++|+|..+.|++++.+ ..+|.
T Consensus 25 iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 25 IAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 5566666789999886554 355678999999999999999888888554 55554
No 226
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.0087 Score=35.42 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=40.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEE-EeCCCCCCeEEEEcCCCcEEEEc--CCcEEEE
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTG--SSELSFW 55 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~ 55 (69)
++++.|+.||.|.+++..+-+.+.. -..|..-|+.+.|+|+....++. +.+..+-
T Consensus 294 kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 294 KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred cEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 4788999999999999976554333 36898999999999987655543 4444444
No 227
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.85 E-value=0.0036 Score=35.62 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=31.6
Q ss_pred EEEEEeCCCcEEEEECCCCc-eE----EEEeCCCCCCeEEEEcCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGK-EV----ASWMSFDTEPPVIKWTPGS 42 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~-~~----~~~~~~~~~v~~v~~~~~~ 42 (69)
.++++.+||++.|||++.-. ++ .+-..|.+.++.+.|+|.+
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence 47899999999999997643 22 2235688999999999754
No 228
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.013 Score=34.09 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=46.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCC-CCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 63 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~ 63 (69)
+++++|...|.+.+++..+-+....+..-. ..|..+-++..+.+++.-..+..|..+++.++.
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 478999999999999998876555554333 567788888888888876666666666666443
No 229
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.67 E-value=0.015 Score=34.37 Aligned_cols=53 Identities=15% Similarity=0.412 Sum_probs=32.5
Q ss_pred EEEEeC-CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEE
Q 035275 3 VISGSG-DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFW 55 (69)
Q Consensus 3 ~~s~~~-d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~ 55 (69)
+++++- |..|.+||.+++...-...--.+.+.-+.|+|++..+..+ |...++|
T Consensus 210 l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 210 LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLW 265 (445)
T ss_pred EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeee
Confidence 344443 3479999999875322221223556788999998765554 4445565
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.0083 Score=36.80 Aligned_cols=52 Identities=27% Similarity=0.551 Sum_probs=37.3
Q ss_pred CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--------CcEEEEcCCCCCcC
Q 035275 10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--------SELSFWIPDLSKLG 63 (69)
Q Consensus 10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--------~~~~~~~~~~~~~~ 63 (69)
|.+.|||+.+.+.+........ .-+.|+|+|.+|.++. ..+.||.+....+.
T Consensus 336 G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 336 GDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred CceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 6899999988766655544433 4677999999888763 34888887665443
No 231
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.64 E-value=0.027 Score=34.58 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=47.5
Q ss_pred EEEEeCCC-cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 3 VISGSGDG-SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 3 ~~s~~~d~-~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
++.|..|| .+-++|.++++ +..+...-+.|..+..+|++..++.+.....+|+.|+.
T Consensus 374 ~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred eEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 56677788 79999998776 66777777889999999999988888888999987765
No 232
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=96.63 E-value=0.0065 Score=37.93 Aligned_cols=57 Identities=18% Similarity=0.377 Sum_probs=42.5
Q ss_pred EEEEEeCCCcEEEEECCCCc------eEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGK------EVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~------~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~ 58 (69)
.|+.+.+||.|.++|..... .+..+..|...|..+.|.|....++++++ .+++|...
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK 130 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec
Confidence 47889999999999986532 24556789999999999996666777644 46666543
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.018 Score=34.15 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=49.4
Q ss_pred EEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~ 62 (69)
.|+++..-+.+++||...+ +++.++..-..++.++...|.+.++.+++....+-.||.+..
T Consensus 218 ~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 4788888899999999875 456677666788899999999999999988777777777643
No 234
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0014 Score=40.54 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=42.0
Q ss_pred EEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc
Q 035275 2 FVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 51 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~ 51 (69)
.++.|+.|+++..+|++-+ ++...+.-|...++.|+|++...++++++.+
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD 671 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD 671 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence 4678899999999999644 5567788899999999999999999998554
No 235
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.60 E-value=0.012 Score=37.83 Aligned_cols=51 Identities=10% Similarity=0.114 Sum_probs=38.8
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 51 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~ 51 (69)
.+++.|+.+|.|++||-...+..+.+++-..+|..+..+.+|..++..+..
T Consensus 589 G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 589 GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 368999999999999953333344567778999999999999876655443
No 236
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.45 E-value=0.012 Score=34.70 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=37.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
++++++..|..|++-.......+..+ -+|+.=|..++.-++.. +.|+++|.++++||+.
T Consensus 164 ~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 164 QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT 223 (390)
T ss_pred CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence 46788888888887665443334444 57988888887776554 5666555444444444
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=96.42 E-value=0.01 Score=36.56 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=35.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP 40 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~ 40 (69)
+|+++|++|-.|.||....++.+..-.+|+.=|..|+|.|
T Consensus 345 KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 6899999999999999988887777789999888998874
No 238
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.41 E-value=0.012 Score=35.00 Aligned_cols=51 Identities=10% Similarity=-0.037 Sum_probs=35.3
Q ss_pred CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275 9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLS 60 (69)
Q Consensus 9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~ 60 (69)
+..|.+||.+... ...+..+...+...+|+|++..++.. +....+|+||..
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~ 236 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLR 236 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCC
Confidence 3589999986544 45566777888999999999877654 223445555543
No 239
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.0099 Score=34.92 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=36.2
Q ss_pred CEEEEEeCCCcEEEEECCCCce---EEEEeCCCCCCe--EEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKE---VASWMSFDTEPP--VIKWTPGSLMFVTGSSE--LSFWIPD 58 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~---~~~~~~~~~~v~--~v~~~~~~~~~~s~~~~--~~~~~~~ 58 (69)
++|++.+.+|+|++||.+.-+. +.+..+|..... -+-..+...+++++++| .+||..+
T Consensus 312 q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 312 QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred ceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 3677778899999999976544 666677732211 11223455566666555 6777655
No 240
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.40 E-value=0.0078 Score=25.28 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275 30 DTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59 (69)
Q Consensus 30 ~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~ 59 (69)
...|.+++|+|...++|.+..+..+++++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 345889999999999888755544544433
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.25 E-value=0.063 Score=31.96 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=33.2
Q ss_pred CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275 10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL 59 (69)
Q Consensus 10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~ 59 (69)
..|.+||+.++.. ..+..+.+.+....|+|++..++ +. +.+..+|.++.
T Consensus 226 ~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 226 PRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred CEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence 5799999987753 44555666677889999997654 33 33455665554
No 242
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.18 E-value=0.012 Score=37.69 Aligned_cols=56 Identities=13% Similarity=0.392 Sum_probs=43.1
Q ss_pred CEEEEEeCCCcEEEEECCCCce--------------E-EEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKE--------------V-ASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~--------------~-~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
.|+++|+.||.+++-.+.+... + ..+.+|.+.|..+.|+.+.+-+.++|++ |.+|.
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWM 99 (1189)
T ss_pred CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEe
Confidence 4789999999999988765320 1 1357899999999999988888888776 66663
No 243
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.94 E-value=0.12 Score=28.47 Aligned_cols=58 Identities=21% Similarity=0.368 Sum_probs=37.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEE-------Ee-------CCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVAS-------WM-------SFDTEPPVIKWTPGSLMFVTG-SSELSFWIPD 58 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~-------~~-------~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~ 58 (69)
+++++...+|.+++||+.+.+.+.. +. .....|..+.++.+|..+++- +++...|..+
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 3677888899999999988763211 11 244566777788888766653 4455554433
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.92 E-value=0.14 Score=30.05 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=30.3
Q ss_pred CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275 10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL 59 (69)
Q Consensus 10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~ 59 (69)
..|.+||+.++.. ..+..+.+....+.|+|++..++ +. +....+|.++.
T Consensus 214 ~~i~v~d~~~g~~-~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 214 PEIYVQDLATGQR-EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred cEEEEEECCCCCE-EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 3699999987753 33444555566788999987554 33 23344554443
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=95.88 E-value=0.16 Score=30.34 Aligned_cols=48 Identities=13% Similarity=0.311 Sum_probs=31.7
Q ss_pred cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275 11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL 59 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~ 59 (69)
.|.+||+.++.. ..+....+......|+|++..++ +. +....+|..+.
T Consensus 221 ~I~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 221 VVYVHDLATGRR-RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred EEEEEECCCCCE-EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 599999987763 33443445556789999997665 33 34466776554
No 246
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.83 E-value=0.15 Score=29.07 Aligned_cols=55 Identities=9% Similarity=0.136 Sum_probs=34.2
Q ss_pred EEEEeCCCcEEEEECCC-Cc--eEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCC
Q 035275 3 VISGSGDGSVYAWSVRS-GK--EVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPD 58 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~-~~--~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~ 58 (69)
+++...++.|.+|++.+ ++ .+..+. +.+....+.++|++..+..+ +..+.+|..+
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 44556788999999964 33 222232 33456788999998766443 2346666554
No 247
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=95.83 E-value=0.044 Score=32.25 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=34.1
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
++-..++.|.+.|..+.+.+..+.........+.|+|++..+..++.+..+-.+|+..
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~ 67 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT 67 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc
Confidence 4555678999999999888877765434334577899886544443333344444443
No 248
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=95.74 E-value=0.023 Score=32.41 Aligned_cols=40 Identities=15% Similarity=0.436 Sum_probs=30.7
Q ss_pred EEEEEeCCCcEEEEECCCCceE----------EEEeCCCCCCeEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEV----------ASWMSFDTEPPVIKWTPG 41 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~----------~~~~~~~~~v~~v~~~~~ 41 (69)
+++.|.++|.+.+||+.++... .....|..++..+.|.+.
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~ 216 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS 216 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh
Confidence 4788999999999999887322 223568889999988764
No 249
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=95.67 E-value=0.037 Score=38.79 Aligned_cols=57 Identities=21% Similarity=0.385 Sum_probs=44.5
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEe-CCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWM-SFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~ 58 (69)
+.++|+.||.+.+|....+..+.++. .-..++..+.|+.+|+-+..+ |+.+.+|+..
T Consensus 2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 57899999999999998888877763 333888899999998776655 5567777654
No 250
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=95.54 E-value=0.027 Score=39.35 Aligned_cols=54 Identities=15% Similarity=0.295 Sum_probs=38.1
Q ss_pred eCCCcEEEEECCCCc-eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 7 SGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 7 ~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
++++.+.+||..-.. .-.....|.+.+.++++.|+...+++|+.+..+.+||++
T Consensus 2312 ~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2312 SDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred CCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehH
Confidence 345689999974322 111227899999999999999999999766555555543
No 251
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=95.52 E-value=0.034 Score=32.94 Aligned_cols=44 Identities=11% Similarity=0.152 Sum_probs=31.7
Q ss_pred EEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEc
Q 035275 12 VYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWI 56 (69)
Q Consensus 12 v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~ 56 (69)
+.+|....+. ...+.+|-..+..|.++|+..+++++|.+-.||+
T Consensus 134 ~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRv 177 (390)
T KOG3914|consen 134 FDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRV 177 (390)
T ss_pred eeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEE
Confidence 3444443322 3345789999999999999999999988766554
No 252
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.50 E-value=0.17 Score=28.90 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=33.2
Q ss_pred EEEEEe-CCCcEEEEECCCCc-eE---EEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCC
Q 035275 2 FVISGS-GDGSVYAWSVRSGK-EV---ASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~-~d~~v~~wd~~~~~-~~---~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~ 58 (69)
+++++. .++.|.+|+++... .+ ...... .....+.++|++..+.++ +..+.+|..+
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 455554 35789999985432 11 122111 123578899999877654 3457777655
No 253
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.49 E-value=0.19 Score=30.03 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=33.5
Q ss_pred cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275 11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLS 60 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~ 60 (69)
.|.++|.+.. ....+..+...+...+|+|++..++.. .++..+|.+++.
T Consensus 183 ~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~ 234 (435)
T PRK05137 183 RLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE 234 (435)
T ss_pred EEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC
Confidence 6888887544 456677788888999999999876643 223455555543
No 254
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.45 E-value=0.22 Score=29.80 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=31.4
Q ss_pred cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-C--CcEEEEcCCC
Q 035275 11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-S--SELSFWIPDL 59 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~--~~~~~~~~~~ 59 (69)
.|.+||+.++. ...+..+...+....|+|++..++.. + ....+|..+.
T Consensus 268 ~I~~~d~~tg~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 268 NLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred EEEEEECCCCC-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 58889998775 44554444556788999999866543 2 2356665544
No 255
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.33 E-value=0.28 Score=29.30 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=29.2
Q ss_pred cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275 11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL 59 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~ 59 (69)
.|.+||+.++.. ..+....+.....+|+|++..++ +. +++..+|.++.
T Consensus 229 ~l~~~dl~~g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 229 AIYVQDLATGQR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred EEEEEECCCCCE-EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 588999977753 33444444455788999997554 32 33334554443
No 256
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.31 E-value=0.11 Score=30.81 Aligned_cols=33 Identities=9% Similarity=0.249 Sum_probs=25.1
Q ss_pred eCCCCCCeEEEEcCCCcEEEEcCC-cEEEEcCCC
Q 035275 27 MSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDL 59 (69)
Q Consensus 27 ~~~~~~v~~v~~~~~~~~~~s~~~-~~~~~~~~~ 59 (69)
.+|+..|++++++.+...+.|+|. .|++|.+++
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei 194 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSADDLRINLWNLEI 194 (433)
T ss_pred ccceeEeeeeeecCccceEeeccceeeeeccccc
Confidence 357778899999999999999863 466665544
No 257
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.14 Score=32.26 Aligned_cols=58 Identities=9% Similarity=0.216 Sum_probs=41.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCe-EEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP-VIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
.+|.+.++|.|.++-+. -..++.++-|...+. +++|.|+|..++.|-.+..+-+-|.+
T Consensus 34 LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 34 LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 46777788888888876 444777776776676 99999999999988433333333333
No 258
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=0.14 Score=33.19 Aligned_cols=50 Identities=30% Similarity=0.389 Sum_probs=36.0
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCC-----CcEEEEcCCc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-----SLMFVTGSSE 51 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~s~~~~ 51 (69)
.+++||+.||+|.|-.+.+....++.. ...++..++++|+ ..++++|+..
T Consensus 84 ey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~a 138 (846)
T KOG2066|consen 84 EYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMA 138 (846)
T ss_pred ceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcc
Confidence 378999999999998887776544443 3456788999887 3456666544
No 259
>PRK02889 tolB translocation protein TolB; Provisional
Probab=95.05 E-value=0.13 Score=30.72 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=31.4
Q ss_pred cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275 11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLS 60 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~ 60 (69)
.|.++|.+ +.....+..+...+...+|+|++..++.. +....+|++|..
T Consensus 177 ~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~ 228 (427)
T PRK02889 177 QLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLA 228 (427)
T ss_pred EEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECC
Confidence 56677763 43345555677778899999999876643 223456665543
No 260
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.05 E-value=0.34 Score=28.96 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=34.4
Q ss_pred EEEeCCC--cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CC--cEEEEcCCC
Q 035275 4 ISGSGDG--SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SS--ELSFWIPDL 59 (69)
Q Consensus 4 ~s~~~d~--~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~--~~~~~~~~~ 59 (69)
++.+.+| .|.+||+.++. ...+..+.+.....+|+|++..++.. +. ...+|.++.
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred EEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 3444455 58999997775 45555555555678899998766543 22 345665543
No 261
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.99 E-value=0.073 Score=35.25 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=40.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG 48 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~ 48 (69)
++++.|+..|.|+++++.+|........|...++.+.-+.++.+..+.
T Consensus 1114 ~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1114 NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeee
Confidence 468999999999999999998778888999999988888887765543
No 262
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=0.11 Score=32.29 Aligned_cols=50 Identities=8% Similarity=0.152 Sum_probs=38.2
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 51 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~ 51 (69)
+++.|+.+|.|++||-......+.+++-..+|..|..+.+|..++..+..
T Consensus 443 ~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 443 YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 68999999999999973333344568888889999999888776655443
No 263
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=94.78 E-value=0.31 Score=32.21 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=34.3
Q ss_pred EEEEeCCCcEEEE----ECCCCceEEEEeCCCCCCeEEEEcCCCcEEE--EcCCcEEEEcCCC
Q 035275 3 VISGSGDGSVYAW----SVRSGKEVASWMSFDTEPPVIKWTPGSLMFV--TGSSELSFWIPDL 59 (69)
Q Consensus 3 ~~s~~~d~~v~~w----d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~--s~~~~~~~~~~~~ 59 (69)
++.+..+|.|... +..+.. .-....-+..|.+++|||++.+++ ++.+++.+..-+.
T Consensus 90 l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 90 LCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred EEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 5566778888877 433322 222234566789999999987665 4455555554333
No 264
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.74 E-value=0.13 Score=33.93 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=39.0
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 50 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~ 50 (69)
+++.+|...|+|.+-|..+-+....+..|.+.+.. |.-+++.+++++.
T Consensus 188 r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~ 235 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGY 235 (1118)
T ss_pred cEEEeecccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeec
Confidence 36788999999999999988888899999997655 5556778887644
No 265
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.72 E-value=0.2 Score=31.51 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=41.5
Q ss_pred EEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275 5 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD 58 (69)
Q Consensus 5 s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~ 58 (69)
.++....|+-.++..|+-+..+....+.+.++..++...++++|.. .+-+|.+.
T Consensus 150 ~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 150 LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 3444457888899989877777777788999999999889998854 46677654
No 266
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=94.72 E-value=0.083 Score=31.27 Aligned_cols=59 Identities=14% Similarity=0.263 Sum_probs=37.7
Q ss_pred EEEEEeCCCcEEEEECCCCce----EEEEeCCCCCCeEEEEcC-CCcEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKE----VASWMSFDTEPPVIKWTP-GSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~----~~~~~~~~~~v~~v~~~~-~~~~~~s~~~~~~~~~~~~~ 60 (69)
.++.|..+|.|...|++.+.. ..+.-.|+..|++++.-. +...+.++|-+..|-+||.+
T Consensus 266 Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 266 LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 577889999999999987632 223346888888887654 44445555544444444443
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.67 E-value=0.21 Score=30.31 Aligned_cols=50 Identities=8% Similarity=0.099 Sum_probs=31.9
Q ss_pred CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCCC
Q 035275 9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDLS 60 (69)
Q Consensus 9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~~ 60 (69)
++.|.+||+.+++.+..+... +|..|-|++++.+++-. +..+.+..++.+
T Consensus 125 ~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 125 SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 347999999999877777544 37899999998877654 556888776654
No 268
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.66 E-value=0.35 Score=28.98 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=30.1
Q ss_pred CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275 10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLS 60 (69)
Q Consensus 10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~ 60 (69)
..+.+|++.+++. ..+....+......|+|++..++.. +....+|.+|..
T Consensus 223 ~~i~i~dl~~G~~-~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 223 SALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred cEEEEEECCCCCe-EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 4688889877652 3333333334568899999866632 334456665543
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.27 E-value=0.66 Score=28.05 Aligned_cols=55 Identities=13% Similarity=0.257 Sum_probs=33.5
Q ss_pred EEEeCCCc--EEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEE-cC--CcEEEEcCCC
Q 035275 4 ISGSGDGS--VYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT-GS--SELSFWIPDL 59 (69)
Q Consensus 4 ~s~~~d~~--v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s-~~--~~~~~~~~~~ 59 (69)
++.+.++. |.++|+.+++ ...+..+........|+|++..++. ++ ....+|.++.
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred EEEeCCCCeEEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 34455564 7777887665 4455555555567889999876553 32 3456665554
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.26 E-value=0.59 Score=27.24 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=24.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDT 31 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~ 31 (69)
.++.++.+|.|.++|..+++.+..+..+..
T Consensus 322 ~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 322 YLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 567888999999999999988877765543
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.08 E-value=0.86 Score=30.68 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=34.3
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEe-C------------CCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWM-S------------FDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 59 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~-~------------~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~ 59 (69)
+++-+.+++|.+||..++....... + .-.....+++++++.++++...+-+|..++.
T Consensus 818 YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 818 YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 4555667789999987765332221 1 1123568899999988877644434444443
No 272
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=94.03 E-value=0.34 Score=28.62 Aligned_cols=33 Identities=6% Similarity=0.258 Sum_probs=23.7
Q ss_pred CCCCCCeEEEEcCCCcEEEEcCC-cEEEEcCCCC
Q 035275 28 SFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDLS 60 (69)
Q Consensus 28 ~~~~~v~~v~~~~~~~~~~s~~~-~~~~~~~~~~ 60 (69)
.|...+.+++++.+...+.++|. .|++|.+++.
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~ 203 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEII 203 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeecccccc
Confidence 45666788889988888888853 5777765544
No 273
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.96 E-value=0.75 Score=27.36 Aligned_cols=48 Identities=13% Similarity=0.351 Sum_probs=28.9
Q ss_pred cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275 11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL 59 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~ 59 (69)
.|.+|++.++.. ..+....+......|+|++..++ +. ++...+|.+|.
T Consensus 224 ~l~~~~l~~g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 224 RIFVQNLDTGRR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred EEEEEECCCCCE-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 588889877753 33333334445688999987665 32 33345555544
No 274
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.55 Score=28.46 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=44.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~~ 62 (69)
++..++-+.+|++.|+++.........+ ..+-+++|..+. ..+-.|+.+..++.+|.+..
T Consensus 208 Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 208 LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 4567788889999999988766556566 667788888654 56667888888888877643
No 275
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.79 E-value=0.66 Score=26.85 Aligned_cols=60 Identities=20% Similarity=0.326 Sum_probs=36.8
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
++++.|...|.+++-+..+|...+.+..-...=...+..+++..+-.++.+.+++..|+.
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred CEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccc
Confidence 357788888999999999886555543222111123345566666666666666655554
No 276
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.58 E-value=0.49 Score=26.53 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=22.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFD 30 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~ 30 (69)
+..++.+||.|+.|++..++.+.....|+
T Consensus 116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 116 LGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred eeEEeccCCceeeeccccCceeeeecccc
Confidence 45778889999999998777666666676
No 277
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=0.73 Score=31.16 Aligned_cols=55 Identities=22% Similarity=0.407 Sum_probs=38.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEE---EEcCCCcEEEEcCCcEEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVI---KWTPGSLMFVTGSSELSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v---~~~~~~~~~~s~~~~~~~~~ 56 (69)
.++.|-.+|.|.+||...++.+..+..|..+...+ .+..+...+.++|.-..+|.
T Consensus 144 ~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~ 201 (1206)
T KOG2079|consen 144 LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWK 201 (1206)
T ss_pred eeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEE
Confidence 46677888999999999988877776555554443 34445556777777666774
No 278
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.15 E-value=0.29 Score=20.19 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=18.0
Q ss_pred CCCeEEEEcCCC---cEEEEcCCcEEEEcCCCC
Q 035275 31 TEPPVIKWTPGS---LMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 31 ~~v~~v~~~~~~---~~~~s~~~~~~~~~~~~~ 60 (69)
+.++++.|+|.. .+++-+....++-++|.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 357899999754 366655444444445554
No 279
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.07 E-value=1.2 Score=26.98 Aligned_cols=49 Identities=8% Similarity=0.190 Sum_probs=29.2
Q ss_pred cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEE-c--CCcEEEEcCCCC
Q 035275 11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT-G--SSELSFWIPDLS 60 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s-~--~~~~~~~~~~~~ 60 (69)
.|.++|+.+++. ..+....+......|+|++..++. . +....+|.+|..
T Consensus 243 ~L~~~dl~tg~~-~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 243 EIFVQDIYTQVR-EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred EEEEEECCCCCe-EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 588888877653 233322333346789999986653 2 344556665543
No 280
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=92.85 E-value=0.16 Score=31.22 Aligned_cols=36 Identities=8% Similarity=0.113 Sum_probs=28.9
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCC
Q 035275 24 ASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL 59 (69)
Q Consensus 24 ~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~ 59 (69)
..|..|.+.|..|.|+..+..++|++.+ +.+|.|-.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~ 173 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVS 173 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhc
Confidence 4567899999999999999999999766 55666543
No 281
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.29 E-value=0.51 Score=29.07 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=19.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEE
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVA 24 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~ 24 (69)
++++.+.|+.+++||+.++..+.
T Consensus 232 ~l~tl~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 232 FLFTLSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp EEEEEETTSEEEEEETTTTCEEE
T ss_pred EEEEEeCCCeEEEEECCCCeEEE
Confidence 67899999999999999987633
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=92.29 E-value=0.62 Score=26.80 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=20.4
Q ss_pred CCCCeEEEEcCCCcEEEEc--CCcEEEE
Q 035275 30 DTEPPVIKWTPGSLMFVTG--SSELSFW 55 (69)
Q Consensus 30 ~~~v~~v~~~~~~~~~~s~--~~~~~~~ 55 (69)
...|..|+.+|++..+++. ++.+.+|
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLW 256 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEE
Confidence 4567899999999999887 5556666
No 283
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.14 E-value=0.19 Score=34.12 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=30.4
Q ss_pred CceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCCc
Q 035275 20 GKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 20 ~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~~ 62 (69)
|..+.++..|...+..++.++.. .+++|++.+..+-+|+..++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~ 1081 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL 1081 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhh
Confidence 45567788888888877777654 89999977755555555543
No 284
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.09 E-value=1.5 Score=25.77 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=29.3
Q ss_pred cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC---cEEEEcCCCC
Q 035275 11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS---ELSFWIPDLS 60 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~---~~~~~~~~~~ 60 (69)
.|.++|+.+++ ...+..+........|+|++..++.++. ...++.++..
T Consensus 303 ~iy~~d~~~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 303 QIYMMDADGGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred eEEEEECCCCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 47777776655 3344434445567789999877665422 2456655543
No 285
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.99 E-value=0.24 Score=31.67 Aligned_cols=52 Identities=15% Similarity=0.325 Sum_probs=37.2
Q ss_pred EEEEeCCCcEEEEECCCCce---E--EEE-eCCCCCCeEEEEcCCCcEEEEcCCcEEE
Q 035275 3 VISGSGDGSVYAWSVRSGKE---V--ASW-MSFDTEPPVIKWTPGSLMFVTGSSELSF 54 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~---~--~~~-~~~~~~v~~v~~~~~~~~~~s~~~~~~~ 54 (69)
++.|++.|.|.++-+..+.+ . ... ..|..+|+++.|++++-.+.+||....+
T Consensus 91 vAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 91 VAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKV 148 (726)
T ss_pred hhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceE
Confidence 46677788899888765432 1 111 3467889999999999999999776443
No 286
>PRK00178 tolB translocation protein TolB; Provisional
Probab=91.94 E-value=1.7 Score=25.93 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=32.0
Q ss_pred EEeCCC--cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-EcC--CcEEEEcCCC
Q 035275 5 SGSGDG--SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TGS--SELSFWIPDL 59 (69)
Q Consensus 5 s~~~d~--~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~~--~~~~~~~~~~ 59 (69)
+.+.+| .|.++|+.++. ...+..+.+......|+|++..++ +++ ....+|.++.
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred EEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 444444 58888987765 444555555556678999987554 332 2345555443
No 287
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=91.73 E-value=1.8 Score=25.99 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=39.3
Q ss_pred CEEEEEeCCCcEEEEECCCCc-----eEEEEeCCC------------CCCeEEEEcCCC---cEEEEc-CCcEEEEcCCC
Q 035275 1 MFVISGSGDGSVYAWSVRSGK-----EVASWMSFD------------TEPPVIKWTPGS---LMFVTG-SSELSFWIPDL 59 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~-----~~~~~~~~~------------~~v~~v~~~~~~---~~~~s~-~~~~~~~~~~~ 59 (69)
.+|++|..+|+|.++.-.... .......|. .+|..+.|.+++ .+++++ +..+.+|....
T Consensus 38 e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~e 117 (433)
T KOG1354|consen 38 ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRE 117 (433)
T ss_pred ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeec
Confidence 368999999999988754322 223344443 367788888764 345555 67799997554
Q ss_pred CC
Q 035275 60 SK 61 (69)
Q Consensus 60 ~~ 61 (69)
+.
T Consensus 118 r~ 119 (433)
T KOG1354|consen 118 RG 119 (433)
T ss_pred cc
Confidence 43
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=91.52 E-value=1.6 Score=27.38 Aligned_cols=47 Identities=13% Similarity=0.066 Sum_probs=34.5
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG 48 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~ 48 (69)
+++.+.....+-+.|+++++....-.+..+.|....|+|+..++|=+
T Consensus 415 ~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYa 461 (668)
T COG4946 415 KVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYA 461 (668)
T ss_pred EEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEe
Confidence 45666666678888998887433335566778899999999888865
No 289
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=90.71 E-value=0.49 Score=17.53 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=17.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEE
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVAS 25 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~ 25 (69)
.++.++.+|.+...|..+|+....
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 456677788888888888876544
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=90.54 E-value=2.2 Score=24.84 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=36.9
Q ss_pred EEEEEeCCCcEEEEECCCCc--eEE-EEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGK--EVA-SWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~--~~~-~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~ 62 (69)
++++.++...|.+|.++... .+. ....-...-.+.+|+.....+|.+.++..+-+||++.+
T Consensus 172 ~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 172 WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 45666666788899886542 122 22233344478899988888888755544444445443
No 291
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=90.43 E-value=2.2 Score=25.59 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=28.9
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG 48 (69)
Q Consensus 4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~ 48 (69)
.+...+-+|.+|.+.+.. ...+.-....+..++|+|++.+.+-.
T Consensus 108 ~tseF~lriTVWSL~t~~-~~~~~~pK~~~kg~~f~~dg~f~ai~ 151 (447)
T KOG4497|consen 108 LTSEFDLRITVWSLNTQK-GYLLPHPKTNVKGYAFHPDGQFCAIL 151 (447)
T ss_pred eeecceeEEEEEEeccce-eEEecccccCceeEEECCCCceeeee
Confidence 344445588899987654 22333344556899999999877654
No 292
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=90.30 E-value=0.64 Score=18.19 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=21.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEe
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWM 27 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~ 27 (69)
.+..+..+|.+.-.|.++|+.++...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 45667899999999999999887764
No 293
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=89.94 E-value=2.9 Score=25.14 Aligned_cols=53 Identities=17% Similarity=0.471 Sum_probs=34.2
Q ss_pred EEeCCCcEEEEECC--CCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcC
Q 035275 5 SGSGDGSVYAWSVR--SGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIP 57 (69)
Q Consensus 5 s~~~d~~v~~wd~~--~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~ 57 (69)
.|...|.|.+..+. .-.++..+.+|.+.+.+..|.|....+.++. ..+..|..
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEec
Confidence 34444444443332 2345677889999999999998877777764 44666643
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=89.78 E-value=0.67 Score=30.52 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=34.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS 42 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~ 42 (69)
.++.|...|+|.++|+.++.....+..|++.|.++.|--..
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s 479 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS 479 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce
Confidence 47889999999999999888777788899999998886543
No 295
>PRK01029 tolB translocation protein TolB; Provisional
Probab=89.47 E-value=3.2 Score=25.09 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=29.1
Q ss_pred cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275 11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL 59 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~ 59 (69)
.|.+||+.+++. ..+......+....|+|++..++ ++ .....+|.++.
T Consensus 352 ~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 352 QICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred EEEEEECCCCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 688999987763 44433334456788999987655 32 22344554443
No 296
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.38 E-value=1.2 Score=28.17 Aligned_cols=51 Identities=8% Similarity=0.109 Sum_probs=37.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 51 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~ 51 (69)
.+++.++..|.|++||--.-+..+.+++-...|..+..+.+|.++.+.|.+
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 378999999999999964334344567777778888888888776665543
No 297
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.71 E-value=1.5 Score=28.88 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=38.7
Q ss_pred EEEEEeCCCcEEEEECCCCc-eEEEEeCCCCCCeEEEEcC-CCcEEEEc-CCcEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTP-GSLMFVTG-SSELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v~~~~-~~~~~~s~-~~~~~~~~~~ 58 (69)
-+++++-|..+..||+++.. ++..+..-...-..|+|+- +...+++. ..++++|...
T Consensus 129 Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 129 VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred ceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 36788999999999998754 4445543334446788884 45566665 5678888643
No 298
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=87.95 E-value=1.7 Score=25.85 Aligned_cols=59 Identities=10% Similarity=0.185 Sum_probs=38.1
Q ss_pred EEEEeCCCcEEEEECCCCce---EE-----EE--------eCCCCCCeEEEEcCCCcEEEEcCC-cEEEEcCCCCC
Q 035275 3 VISGSGDGSVYAWSVRSGKE---VA-----SW--------MSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDLSK 61 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~---~~-----~~--------~~~~~~v~~v~~~~~~~~~~s~~~-~~~~~~~~~~~ 61 (69)
+.-.+..|.|++.|++.... .+ .+ .+-...|..++|++.+..+++-|- .+.+|..++.+
T Consensus 237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k 312 (460)
T COG5170 237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK 312 (460)
T ss_pred EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence 44456678999999874321 00 11 122346778899999988887654 58888766553
No 299
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.29 E-value=4 Score=23.50 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=33.6
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEc-CCC-cEEEEc
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT-PGS-LMFVTG 48 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~-~~~-~~~~s~ 48 (69)
.+++...++|...|..+|+.+..+.-...++.+++|- |+. .+.+++
T Consensus 226 ~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 226 YVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 3444455689999999999888888789999999996 433 344443
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.11 E-value=0.4 Score=31.33 Aligned_cols=50 Identities=14% Similarity=0.369 Sum_probs=34.0
Q ss_pred CCcEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCC-cEEEEc--CCcEEEEcCC
Q 035275 9 DGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGS-LMFVTG--SSELSFWIPD 58 (69)
Q Consensus 9 d~~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~-~~~~s~--~~~~~~~~~~ 58 (69)
...|.+||.+.| .++..+.+|...++.+.|+... ..+-+. +..+.+|.++
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 347999999766 4567788899989998887632 223333 4457776654
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=86.85 E-value=2.4 Score=28.15 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=30.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP 40 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~ 40 (69)
.++++.-.|.|.+||...+-...-+..|..++..+.|-+
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVP 119 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeee
Confidence 367788889999999987766666677888888888764
No 302
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.42 E-value=2.4 Score=20.19 Aligned_cols=41 Identities=7% Similarity=0.144 Sum_probs=23.4
Q ss_pred eCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275 7 SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG 48 (69)
Q Consensus 7 ~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~ 48 (69)
..+|++.-||..+++....+.+- .--+.|+.++++.+++.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEE
Confidence 34577888888777632222221 123789999998876654
No 303
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=85.90 E-value=5.1 Score=23.38 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=32.9
Q ss_pred EEEeCCCcEEEEECCC--Cce--EEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCC
Q 035275 4 ISGSGDGSVYAWSVRS--GKE--VASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDL 59 (69)
Q Consensus 4 ~s~~~d~~v~~wd~~~--~~~--~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~ 59 (69)
++.-.+..|.+++++. +.. +..........+.+.++|++.+++.+ +..+.++..|.
T Consensus 261 vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 261 VSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 4444556799999843 332 22222222334789999999877765 34577776653
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.54 E-value=0.12 Score=31.66 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=36.7
Q ss_pred CEEEEEeCCCcEEEEECCC--C-ceEEEEeCCCCCCeEEEEcCCCcEEEEcCC
Q 035275 1 MFVISGSGDGSVYAWSVRS--G-KEVASWMSFDTEPPVIKWTPGSLMFVTGSS 50 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~--~-~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~ 50 (69)
+++.+++-||.+++|.-.. + +.++....|.+.+..+..+-++..+.|.+.
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d 73 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVED 73 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccC
Confidence 4688999999999999743 2 123445678888888877878888888543
No 305
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=85.38 E-value=3.6 Score=24.05 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=30.3
Q ss_pred CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEE
Q 035275 10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFW 55 (69)
Q Consensus 10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~ 55 (69)
+...++|+.++. ...+......+....|+|++..++-. +.++.+.
T Consensus 23 ~~y~i~d~~~~~-~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~ 68 (353)
T PF00930_consen 23 GDYYIYDIETGE-ITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLR 68 (353)
T ss_dssp EEEEEEETTTTE-EEESS-EETTBSEEEE-SSSTEEEEEETTEEEEE
T ss_pred eeEEEEecCCCc-eEECcCCccccccceeecCCCeeEEEecCceEEE
Confidence 568889998875 44443335677899999999877755 5555555
No 306
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=85.27 E-value=3.3 Score=20.66 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=21.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT 39 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~ 39 (69)
.|+.|++|..|++|+-+ ..+....... .+.++.-.
T Consensus 17 eLlvGs~D~~IRvf~~~--e~~~Ei~e~~-~v~~L~~~ 51 (111)
T PF14783_consen 17 ELLVGSDDFEIRVFKGD--EIVAEITETD-KVTSLCSL 51 (111)
T ss_pred eEEEecCCcEEEEEeCC--cEEEEEeccc-ceEEEEEc
Confidence 48899999999998854 3344444443 34444433
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=85.26 E-value=9.6 Score=26.01 Aligned_cols=55 Identities=9% Similarity=0.099 Sum_probs=36.2
Q ss_pred EEEEEeCCCcEEEEECCC-Cce-EEEE--eCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275 2 FVISGSGDGSVYAWSVRS-GKE-VASW--MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~-~~~-~~~~--~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~ 56 (69)
.++++++.|...+-|..+ +++ .... ......+..+.+++.+..++-++.+ +..|.
T Consensus 280 ~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 280 RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 367788889999888321 121 2222 2333447889999999999988654 66664
No 308
>PRK01029 tolB translocation protein TolB; Provisional
Probab=84.93 E-value=6.6 Score=23.82 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=16.8
Q ss_pred EEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275 23 VASWMSFDTEPPVIKWTPGSLMFVTG 48 (69)
Q Consensus 23 ~~~~~~~~~~v~~v~~~~~~~~~~s~ 48 (69)
...+..+...+....|+|++..++..
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEE
Confidence 34444444555678899999876643
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.89 E-value=11 Score=26.35 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=34.2
Q ss_pred EEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCCCcEEE--EcCCcEEEEcCCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFV--TGSSELSFWIPDL 59 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~--s~~~~~~~~~~~~ 59 (69)
++.+..+|.|.+-|..+.. ..+ .--...|.+++|+|++..++ ++...+.+...+.
T Consensus 83 i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 83 ICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred EEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence 4556667888877665443 223 22345688999999987655 4555566554443
No 310
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=84.41 E-value=11 Score=25.88 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=31.9
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeC-------------CC--------CCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMS-------------FD--------TEPPVIKWTPGSLMFVTGSSE--LSFWIPD 58 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~-------------~~--------~~v~~v~~~~~~~~~~s~~~~--~~~~~~~ 58 (69)
+++-+.++.|.+||..++.......+ .. ....++.+++++.++++...+ +.+|..+
T Consensus 755 YVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 755 YIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 34555567899999876542211100 00 112578888988877775444 5555543
No 311
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=84.23 E-value=1.5 Score=15.95 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=10.1
Q ss_pred EEEEcCCCcEEEEcCCcEEE
Q 035275 35 VIKWTPGSLMFVTGSSELSF 54 (69)
Q Consensus 35 ~v~~~~~~~~~~s~~~~~~~ 54 (69)
.++..+++.++++-..+.++
T Consensus 6 gvav~~~g~i~VaD~~n~rV 25 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRV 25 (28)
T ss_dssp EEEEETTSEEEEEECCCTEE
T ss_pred EEEEeCCCCEEEEECCCCEE
Confidence 45555566555554444333
No 312
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.08 E-value=3.5 Score=26.54 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=28.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcC
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTP 40 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~ 40 (69)
++++.|-.||+|.+.|+.++..+... ......|.++-|.+
T Consensus 75 kllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 46899999999999999888766552 33445566666654
No 313
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.81 E-value=5.7 Score=22.18 Aligned_cols=45 Identities=7% Similarity=0.101 Sum_probs=30.8
Q ss_pred EEEEeCCCcEEEEECCCC--ceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275 3 VISGSGDGSVYAWSVRSG--KEVASWMSFDTEPPVIKWTPGSLMFVTG 48 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~--~~~~~~~~~~~~v~~v~~~~~~~~~~s~ 48 (69)
++.+...+.|.+|++... +....+..- ++|..+.++..|..+++-
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEE
Confidence 444445578999999732 234444333 778899999999888873
No 314
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=83.31 E-value=5.3 Score=21.46 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=21.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMS 28 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~ 28 (69)
.+++++.++.|..+|..+|+.+.....
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~ 64 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKVLWRFDL 64 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEEEEEEEC
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEeec
Confidence 466677889999999999998777654
No 315
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=83.14 E-value=4.8 Score=21.60 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=15.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEE
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVA 24 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~ 24 (69)
.++.++.++.+..||+.+++..+
T Consensus 214 ~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 214 TLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEEEETTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEe
Confidence 34555567778888877776554
No 316
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=82.54 E-value=7.9 Score=22.90 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=35.0
Q ss_pred EEEEeCCCcEEEEECCCCceEE--EEeCCCCCCeEEEEcCC-CcEEEEcCCcEEEEcCCCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVA--SWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~--~~~~~~~~v~~v~~~~~-~~~~~s~~~~~~~~~~~~~ 60 (69)
+++...+|.+.+-+.......+ .+.+|...+=...|+.. .+++-+|+++..+..||++
T Consensus 136 i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 136 IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 4566666777744443333333 56888877767777753 3567788666555555544
No 317
>PRK04043 tolB translocation protein TolB; Provisional
Probab=81.89 E-value=9.2 Score=23.23 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=29.7
Q ss_pred CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275 10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL 59 (69)
Q Consensus 10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~ 59 (69)
..|.++|+.+++. ..+....+......|+|++..++ +. +.+-.+|+.+.
T Consensus 213 ~~Iyv~dl~tg~~-~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 213 PTLYKYNLYTGKK-EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CEEEEEECCCCcE-EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 4688888877753 33433445555678999986544 22 33456666553
No 318
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=81.75 E-value=8.1 Score=22.49 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=21.0
Q ss_pred CeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275 33 PPVIKWTPGSLMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 33 v~~v~~~~~~~~~~s~~~~~~~~~~~~~ 60 (69)
=+.++|+|++.+++.+.....|.++|..
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~ 73 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLM 73 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecc
Confidence 4689999999999988666555555543
No 319
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.96 E-value=5.1 Score=26.97 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=35.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~ 58 (69)
.+++++.||.|.+++....+..+.+... .+-..+.|...+...+++|.....|.-|
T Consensus 28 s~v~~~~d~si~lfn~~~r~qski~~~~-~p~~nlv~tnhgl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 28 SFVLAHQDGSIILFNFIPRRQSKICEEA-KPKENLVFTNHGLVTATSDRRALAWKED 83 (1636)
T ss_pred eEEEEecCCcEEEEeecccchhhhhhhc-CCccceeeeccceEEEeccchhheeecc
Confidence 4788999999999998665542222111 1223455666677777777766666433
No 320
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=80.72 E-value=9.1 Score=22.41 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=19.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEe
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWM 27 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~ 27 (69)
.++.++.+|.+..+|..+|+.++...
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~ 92 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVD 92 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeec
Confidence 45667777888888888888766553
No 321
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.78 E-value=2.1 Score=29.19 Aligned_cols=55 Identities=9% Similarity=0.259 Sum_probs=35.1
Q ss_pred EEEEeCCCcEEEEECCCCceEE--EEeC-CCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVA--SWMS-FDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDL 59 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~--~~~~-~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~ 59 (69)
++.|++.|.+...|.... ++ .... -.++|.+++|+.++..++.|-. -+.+|.-+.
T Consensus 102 ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred EEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 455666666776666432 22 2222 2478999999999988888744 466665444
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=79.51 E-value=9.8 Score=24.23 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=22.4
Q ss_pred CCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275 28 SFDTEPPVIKWTPGSLMFVTGSSELSFWIPD 58 (69)
Q Consensus 28 ~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~ 58 (69)
.....+.|++++|+...++.|+.|..+-+||
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 4567789999999988888875554444444
No 323
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.17 E-value=6.3 Score=20.79 Aligned_cols=23 Identities=13% Similarity=0.427 Sum_probs=19.2
Q ss_pred CeEEEEcCCCcEEEEcCCcEEEE
Q 035275 33 PPVIKWTPGSLMFVTGSSELSFW 55 (69)
Q Consensus 33 v~~v~~~~~~~~~~s~~~~~~~~ 55 (69)
..+++||.++.+.+.++..+.|.
T Consensus 7 ~~~l~WS~Dg~laV~t~~~v~IL 29 (173)
T PF12657_consen 7 PNALAWSEDGQLAVATGESVHIL 29 (173)
T ss_pred CcCeeECCCCCEEEEcCCeEEEE
Confidence 36889999998888888888888
No 324
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=79.01 E-value=8.9 Score=21.31 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=31.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEcCCcEEEEc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSSELSFWI 56 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~~~~~~~~~ 56 (69)
+.++.|.++| +.+++........... +..+|..+...|+.. +++.+|+.+.++.
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLsd~~l~~~~ 62 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLSDGQLYVYD 62 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEcCCccEEEE
Confidence 3578888888 8988983322222221 222378888777654 4555565555553
No 325
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=78.93 E-value=11 Score=22.51 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=30.7
Q ss_pred CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEcC---CcEEEEc
Q 035275 10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS---SELSFWI 56 (69)
Q Consensus 10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~~---~~~~~~~ 56 (69)
+.|.++|..+++.+..+.. ...+..+.++|++. .+...+ +++.+..
T Consensus 279 ~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred CEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 4688999988887776643 23457899999987 555443 3455543
No 326
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=78.78 E-value=3.2 Score=16.00 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=17.2
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEe
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWM 27 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~ 27 (69)
+++...++.|.++|..++..+..+.
T Consensus 7 yv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 7 YVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEE
Confidence 3445556789999998777665554
No 327
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=78.18 E-value=11 Score=21.83 Aligned_cols=56 Identities=9% Similarity=0.202 Sum_probs=31.9
Q ss_pred EEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCCcEEEE-cCCcEEEEcCCC
Q 035275 2 FVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVT-GSSELSFWIPDL 59 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~s-~~~~~~~~~~~~ 59 (69)
+++.|.++| +.+-+.... ..... ..+..+|.++...+....+++ ++....++.+++
T Consensus 15 ~lL~GTe~G-ly~~~~~~~~~~~~k-l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L 72 (302)
T smart00036 15 WLLVGTEEG-LYVLNISDQPGTLEK-LIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPL 72 (302)
T ss_pred EEEEEeCCc-eEEEEcccCCCCeEE-ecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEH
Confidence 678888888 555565432 11222 235567889988877654443 455533444443
No 328
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=77.90 E-value=6.4 Score=25.74 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=31.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEe-CCCCCCeEEEEcCCCcEEEEcCCc
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEVASWM-SFDTEPPVIKWTPGSLMFVTGSSE 51 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~s~~~~ 51 (69)
++++.|+.-|.+++|+-..+.....-. +-.+.+.....+++..++|.|+..
T Consensus 46 ~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~ 97 (726)
T KOG3621|consen 46 EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTAS 97 (726)
T ss_pred ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCC
Confidence 478888989999999977665332222 233333444567766666665444
No 329
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=76.74 E-value=17 Score=23.57 Aligned_cols=46 Identities=15% Similarity=0.447 Sum_probs=28.6
Q ss_pred CcEEEEECCCCceEEEEeCCCC---CCeEEEEcCCCcEEEEc-CCcEEEE
Q 035275 10 GSVYAWSVRSGKEVASWMSFDT---EPPVIKWTPGSLMFVTG-SSELSFW 55 (69)
Q Consensus 10 ~~v~~wd~~~~~~~~~~~~~~~---~v~~v~~~~~~~~~~s~-~~~~~~~ 55 (69)
..+.|||+.+|.....+....+ .-.-+.||.+...+|.- ...+.|+
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIy 331 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIY 331 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEE
Confidence 4799999999986666544222 22456788877776653 2334443
No 330
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=76.74 E-value=5.9 Score=25.58 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCcEEEEc-CCcEEEEcCCCC
Q 035275 30 DTEPPVIKWTPGSLMFVTG-SSELSFWIPDLS 60 (69)
Q Consensus 30 ~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~~ 60 (69)
.+.|.|..|.++|..++.+ +.....+.||-.
T Consensus 155 ~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 155 SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 4668899999999877765 567888888743
No 331
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=75.79 E-value=19 Score=23.46 Aligned_cols=49 Identities=20% Similarity=0.372 Sum_probs=29.7
Q ss_pred eCCC-cEEEEECCCCceEEEE-eCCCCCCeEEEEc--CCCcEEEE-c-CCcEEEE
Q 035275 7 SGDG-SVYAWSVRSGKEVASW-MSFDTEPPVIKWT--PGSLMFVT-G-SSELSFW 55 (69)
Q Consensus 7 ~~d~-~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~--~~~~~~~s-~-~~~~~~~ 55 (69)
..++ .+.|||...+.....- -...+.|..++|. |++..+.+ | ...+.++
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~ 101 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLY 101 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEE
Confidence 4444 7899999877633222 2446778888885 66665554 3 3344444
No 332
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=75.76 E-value=14 Score=21.70 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=21.9
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEcCC-cEEEEcCC
Q 035275 20 GKEVASWMSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPD 58 (69)
Q Consensus 20 ~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~-~~~~~~~~ 58 (69)
+.....+..+-..-+.++|+|++..+..+|+ ..++|.++
T Consensus 152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 3333333444444478999999966555544 34455443
No 333
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=75.15 E-value=4.4 Score=15.76 Aligned_cols=17 Identities=41% Similarity=0.720 Sum_probs=9.7
Q ss_pred EEEEEeCCCcEEEEECC
Q 035275 2 FVISGSGDGSVYAWSVR 18 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~ 18 (69)
.+..++.||.+...|..
T Consensus 23 ~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 23 RVYVGTGDGNLYALDAA 39 (40)
T ss_dssp EEEEE-TTSEEEEEETT
T ss_pred EEEEEcCCCEEEEEeCC
Confidence 35556666777666654
No 334
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.87 E-value=5.4 Score=25.74 Aligned_cols=45 Identities=11% Similarity=0.029 Sum_probs=32.3
Q ss_pred EEEeCCCcEEEEECCCCceEEEE-----eCCCCCCeEEEEcCCCcEEEEc
Q 035275 4 ISGSGDGSVYAWSVRSGKEVASW-----MSFDTEPPVIKWTPGSLMFVTG 48 (69)
Q Consensus 4 ~s~~~d~~v~~wd~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~~~s~ 48 (69)
+.++...+|+++|.+...-...+ .+.++.+++++..+.++.++.+
T Consensus 845 AgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~ 894 (1034)
T KOG4190|consen 845 AGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAA 894 (1034)
T ss_pred eeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHH
Confidence 34466678999999887644333 4556778899998888777765
No 335
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.81 E-value=18 Score=22.78 Aligned_cols=54 Identities=9% Similarity=0.088 Sum_probs=37.8
Q ss_pred EEeCCCcEEEEECCCCc-eEEEE-eCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275 5 SGSGDGSVYAWSVRSGK-EVASW-MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD 58 (69)
Q Consensus 5 s~~~d~~v~~wd~~~~~-~~~~~-~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~ 58 (69)
+.-.++.+.++|-.... +.... .-|..+|.++.+++-+..++|.+.. +-.|..+
T Consensus 117 s~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred ecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 34456788888875432 23222 5689999999999999888888654 6667654
No 336
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=74.81 E-value=11 Score=21.99 Aligned_cols=53 Identities=15% Similarity=0.396 Sum_probs=30.3
Q ss_pred EEEEeCCCcEEEEECCCCceEE---EE-eCCCCCCeEEEEcCCCcEEEEcCCcEEEE
Q 035275 3 VISGSGDGSVYAWSVRSGKEVA---SW-MSFDTEPPVIKWTPGSLMFVTGSSELSFW 55 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~---~~-~~~~~~v~~v~~~~~~~~~~s~~~~~~~~ 55 (69)
++.....+.|....++++..+. .+ .....++..+.+.|++.++++.+.+..||
T Consensus 274 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 274 FVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred EEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3333334467766665443222 22 23445788999999999988876554443
No 337
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=73.17 E-value=18 Score=21.81 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=35.0
Q ss_pred EEEEEeCCC-cEEEEECCCCceEE--EE-eCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCC
Q 035275 2 FVISGSGDG-SVYAWSVRSGKEVA--SW-MSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDL 59 (69)
Q Consensus 2 ~~~s~~~d~-~v~~wd~~~~~~~~--~~-~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~ 59 (69)
++++..-.- +|.+|++..+.... .. ......-+-+.|+|++.+.-.. ++++.+|.++.
T Consensus 158 ~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 444443322 58888988765321 11 1222334788999998764443 56788988776
No 338
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=72.31 E-value=18 Score=21.50 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=21.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMS 28 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~ 28 (69)
.+..++.+|.+...|..+|+.+.....
T Consensus 337 ~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 337 YLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 467788889999999999887766543
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=72.31 E-value=13 Score=22.83 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=29.6
Q ss_pred cEEEEECCCCceEEEE--eCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275 11 SVYAWSVRSGKEVASW--MSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLS 60 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~ 60 (69)
.+.++++.+++....+ .++.. .-+|+|++..++-+ +....+|+.|..
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred eEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 5788888877644333 34433 45699998766533 555777776654
No 340
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=70.87 E-value=19 Score=21.11 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=33.6
Q ss_pred EEEEE-eCCCcEEEEECCCCceEEE---EeC-----------CCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCCC
Q 035275 2 FVISG-SGDGSVYAWSVRSGKEVAS---WMS-----------FDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLSK 61 (69)
Q Consensus 2 ~~~s~-~~d~~v~~wd~~~~~~~~~---~~~-----------~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~~ 61 (69)
+++++ ..+|.+.++++.....+.. ... ......++.++|++..+... ...+.++.++...
T Consensus 100 ~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 100 FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 44444 4577999999976322211 111 12335689999998766554 3347776665543
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=70.53 E-value=23 Score=23.13 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=29.9
Q ss_pred CCcEEEEECCC----C-ceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCCCc
Q 035275 9 DGSVYAWSVRS----G-KEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLSKL 62 (69)
Q Consensus 9 d~~v~~wd~~~----~-~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~~~ 62 (69)
++.|.+.|..+ + ..+..+..- .....+.++|++..++.+ +.++.+. |+.++
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVI--Dv~k~ 353 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVI--DVRKL 353 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEE--EChhh
Confidence 35688889877 3 333333333 233688999999876654 3345554 44443
No 342
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=70.29 E-value=23 Score=21.87 Aligned_cols=49 Identities=24% Similarity=0.197 Sum_probs=30.2
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeC--CCCCCeEEEEcCCCcEEEEcCCcEE
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMS--FDTEPPVIKWTPGSLMFVTGSSELS 53 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~s~~~~~~ 53 (69)
++..-+.||.+.+++-+.-.....++. ..+ .+.|++....+++++.+..
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPg---Pl~Y~~~tDsfvt~sss~~ 197 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPG---PLCYCPRTDSFVTASSSWT 197 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEEEcCCCCCCc---CeEEeecCCEEEEecCcee
Confidence 567788999999999764432223332 233 3567777666666654433
No 343
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=70.25 E-value=20 Score=21.28 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=19.8
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEe
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWM 27 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~ 27 (69)
.++.++.++.+.-+|..+|+..+...
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCccccc
Confidence 35566778899999999998776653
No 344
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=70.07 E-value=21 Score=21.44 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=24.3
Q ss_pred CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275 10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG 48 (69)
Q Consensus 10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~ 48 (69)
++|.+.|..+.+.+..+..-..+ ..+ ++|++..+..+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva 63 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHA 63 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEE
Confidence 78999999988877666432222 234 89987654443
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=69.31 E-value=16 Score=21.00 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=33.9
Q ss_pred CcEEEEECCCC----ceEEEE--eCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 10 GSVYAWSVRSG----KEVASW--MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 10 ~~v~~wd~~~~----~~~~~~--~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
|.|.++++... ..+... ....++|.++.-. ++.++++.+..+.++.++..+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcc
Confidence 88999999773 223322 3456888888755 455666768889988876655
No 346
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=68.10 E-value=9.7 Score=23.12 Aligned_cols=53 Identities=11% Similarity=0.283 Sum_probs=31.2
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC----cEEEEcC
Q 035275 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS----ELSFWIP 57 (69)
Q Consensus 4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~----~~~~~~~ 57 (69)
+++..+|++.-||..+.. .+.+...-.-.+.++.+|++.+++.+-. -.++|+-
T Consensus 193 l~g~~~GRl~~YD~~tK~-~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~ 249 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKV-TKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIK 249 (376)
T ss_pred ecCCCccceEEecCcccc-hhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEec
Confidence 445566777777765543 2233222222357888999988877632 2567764
No 347
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=67.61 E-value=30 Score=22.25 Aligned_cols=43 Identities=16% Similarity=0.365 Sum_probs=25.6
Q ss_pred cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-----CCcEEEEc
Q 035275 11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-----SSELSFWI 56 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-----~~~~~~~~ 56 (69)
.+.|+|++ +.++..+ ..++-+++-|+|.+.+++.+ .+++-+|.
T Consensus 295 kvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 295 KVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred eEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence 45555553 3333333 34555788899999876654 24688874
No 348
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=67.47 E-value=25 Score=21.22 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=37.1
Q ss_pred EEEEEeCC-CcEEEEECCC-Cc--eEEEEeCCCCC----------CeEEEEcCCCcEEEEcC---CcEEEEcCCCCCcCc
Q 035275 2 FVISGSGD-GSVYAWSVRS-GK--EVASWMSFDTE----------PPVIKWTPGSLMFVTGS---SELSFWIPDLSKLGA 64 (69)
Q Consensus 2 ~~~s~~~d-~~v~~wd~~~-~~--~~~~~~~~~~~----------v~~v~~~~~~~~~~s~~---~~~~~~~~~~~~~~~ 64 (69)
+++++... |.|.++-+.. |. ...+...|.++ +....+.|++..+++.| +.+.++.++...|+.
T Consensus 102 ~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 102 FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP 181 (346)
T ss_pred EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccc
Confidence 45555444 4677877754 32 12233445444 78899999998777653 346666665444443
No 349
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=65.15 E-value=41 Score=22.96 Aligned_cols=48 Identities=8% Similarity=-0.031 Sum_probs=33.1
Q ss_pred EEEeCCCcEEEEECCCCceEEEEe---CCCCCCeEEEEcCCCcEEEEcCCc
Q 035275 4 ISGSGDGSVYAWSVRSGKEVASWM---SFDTEPPVIKWTPGSLMFVTGSSE 51 (69)
Q Consensus 4 ~s~~~d~~v~~wd~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~~s~~~~ 51 (69)
+-++++|.|.++.+.+......+. .|...|+++.+.-.+.+++-++++
T Consensus 639 ~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~ 689 (925)
T KOG3522|consen 639 VWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD 689 (925)
T ss_pred eeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC
Confidence 446778999999987765555543 345677888888777776655444
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=64.39 E-value=30 Score=21.06 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=31.8
Q ss_pred cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-EcCCcEEEEcCC
Q 035275 11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TGSSELSFWIPD 58 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~~~~~~~~~~~ 58 (69)
.|.+|+. .|+.+..+.-..+++.++.|+.+..+++ ..++.++++.+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 4778876 5666666654448899999988765544 456677777553
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=64.06 E-value=24 Score=21.88 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=22.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMS 28 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~ 28 (69)
.++.++.||.+..+|.++|+.+.....
T Consensus 408 ~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 408 LVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred eEEEECCCCeEEEEECCCCceeeEEEC
Confidence 467788999999999999998877643
No 352
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=63.58 E-value=4.5 Score=26.35 Aligned_cols=58 Identities=16% Similarity=0.310 Sum_probs=30.7
Q ss_pred EEEEEeCCCcEEEEEC-CCC-ceEEEE----eCCCCCCeEEEEcCCC--cEEEEcCCcEEEEcCCCC
Q 035275 2 FVISGSGDGSVYAWSV-RSG-KEVASW----MSFDTEPPVIKWTPGS--LMFVTGSSELSFWIPDLS 60 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~-~~~-~~~~~~----~~~~~~v~~v~~~~~~--~~~~s~~~~~~~~~~~~~ 60 (69)
++++- .||.|.+||. ..- .++.++ .....++..++|+|-. ...+..-..+.|.++++.
T Consensus 210 Y~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 210 YFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 44444 4899999994 222 222222 2223467899999853 222222334555555543
No 353
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=63.46 E-value=8.8 Score=14.62 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=10.2
Q ss_pred CCCeEEEEcCCCcEEE
Q 035275 31 TEPPVIKWTPGSLMFV 46 (69)
Q Consensus 31 ~~v~~v~~~~~~~~~~ 46 (69)
+.-....|+|++..++
T Consensus 9 ~~~~~p~~SpDGk~i~ 24 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIY 24 (39)
T ss_dssp SSEEEEEE-TTSSEEE
T ss_pred ccccCEEEecCCCEEE
Confidence 3445778999986555
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=62.53 E-value=29 Score=21.93 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=21.9
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeC
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWMS 28 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~ 28 (69)
.++.+..+|.+..+|..+|+.+.....
T Consensus 474 lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 474 LVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred EEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 356677899999999999998877643
No 355
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=61.79 E-value=22 Score=21.90 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=26.3
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCc
Q 035275 26 WMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 26 ~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~ 62 (69)
+......+..+..+|.+.+.+..|.-.++.++|....
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 3444455778889999888888777677777766543
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=58.10 E-value=37 Score=20.71 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=18.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceE
Q 035275 1 MFVISGSGDGSVYAWSVRSGKEV 23 (69)
Q Consensus 1 ~~~~s~~~d~~v~~wd~~~~~~~ 23 (69)
.+++.|+++|.+.+.|++....+
T Consensus 98 GFvaigy~~G~l~viD~RGPavI 120 (395)
T PF08596_consen 98 GFVAIGYESGSLVVIDLRGPAVI 120 (395)
T ss_dssp SEEEEEETTSEEEEEETTTTEEE
T ss_pred cEEEEEecCCcEEEEECCCCeEE
Confidence 37899999999999999654433
No 357
>PRK04043 tolB translocation protein TolB; Provisional
Probab=57.70 E-value=42 Score=20.54 Aligned_cols=36 Identities=6% Similarity=0.110 Sum_probs=21.7
Q ss_pred CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE
Q 035275 10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV 46 (69)
Q Consensus 10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 46 (69)
..|.++|+.++. ...+..+.+......|+|++..++
T Consensus 257 ~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~ 292 (419)
T PRK04043 257 PDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIV 292 (419)
T ss_pred cEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEE
Confidence 357777876664 445544443334557999986544
No 358
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.36 E-value=24 Score=23.64 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=32.2
Q ss_pred EEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEE-cCCcEEEEcCCCCCcCc
Q 035275 12 VYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT-GSSELSFWIPDLSKLGA 64 (69)
Q Consensus 12 v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s-~~~~~~~~~~~~~~~~~ 64 (69)
|.|++. +|..+..+....+.+..+.|+.+..+++. -++.+.++.+..+....
T Consensus 66 I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~ 118 (829)
T KOG2280|consen 66 IRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIES 118 (829)
T ss_pred EEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcc
Confidence 455554 45445444444557889999988766554 47777777665554443
No 359
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.52 E-value=18 Score=25.52 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=19.1
Q ss_pred CCCCeEEEEcCCCcEEEEcCCcEEEE
Q 035275 30 DTEPPVIKWTPGSLMFVTGSSELSFW 55 (69)
Q Consensus 30 ~~~v~~v~~~~~~~~~~s~~~~~~~~ 55 (69)
.....++.|+|.+..++.+....++-
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~v 223 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEV 223 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEE
Confidence 34568999999999888886654433
No 360
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=53.47 E-value=64 Score=22.19 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCc--EEEEcCCcEEEEcCCCCCcC
Q 035275 30 DTEPPVIKWTPGSL--MFVTGSSELSFWIPDLSKLG 63 (69)
Q Consensus 30 ~~~v~~v~~~~~~~--~~~s~~~~~~~~~~~~~~~~ 63 (69)
...|..++|+++.. .+.+.++.+.+|.++.....
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~ 461 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMW 461 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcc
Confidence 46789999998874 44556778999988766443
No 361
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=53.21 E-value=37 Score=18.61 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=30.8
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEc-CCCcEEEEcCCcEEEEcCCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT-PGSLMFVTGSSELSFWIPDL 59 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~-~~~~~~~s~~~~~~~~~~~~ 59 (69)
+++-...+.|..|+..++... .+.... ...+.+. +++.++++....+.+..++.
T Consensus 15 ~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l~v~~~~~~~~~d~~~ 69 (246)
T PF08450_consen 15 YWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRLYVADSGGIAVVDPDT 69 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEEEEEETTCEEEEETTT
T ss_pred EEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEEEEEEcCceEEEecCC
Confidence 344445567777777666432 222222 4667777 77777777665566554433
No 362
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.28 E-value=49 Score=19.68 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=28.1
Q ss_pred EeCCC-cEEEEECCCCceEEEEeCCCCCCe--EEEEcCCCcEEEEc
Q 035275 6 GSGDG-SVYAWSVRSGKEVASWMSFDTEPP--VIKWTPGSLMFVTG 48 (69)
Q Consensus 6 ~~~d~-~v~~wd~~~~~~~~~~~~~~~~v~--~v~~~~~~~~~~s~ 48 (69)
+-.-| ...++|..++.....+....++.. --.|++++..+.+.
T Consensus 23 aRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytT 68 (305)
T PF07433_consen 23 ARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTT 68 (305)
T ss_pred EeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEe
Confidence 33334 467889988887666654444332 34599999887776
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=49.80 E-value=66 Score=20.86 Aligned_cols=18 Identities=0% Similarity=-0.079 Sum_probs=14.1
Q ss_pred CCCCeEEEEcCCCcEEEE
Q 035275 30 DTEPPVIKWTPGSLMFVT 47 (69)
Q Consensus 30 ~~~v~~v~~~~~~~~~~s 47 (69)
.+.|..+.|+|++..++-
T Consensus 447 ~g~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 447 PGPISELQLSRDGVRAAM 464 (591)
T ss_pred CCCcCeEEECCCCCEEEE
Confidence 467899999999876553
No 364
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.53 E-value=30 Score=23.83 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=17.7
Q ss_pred EEEEEeCCCcEEEEECCCCc
Q 035275 2 FVISGSGDGSVYAWSVRSGK 21 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~ 21 (69)
.++++..||.+.+||.+.+.
T Consensus 248 ~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 248 HFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred eEEEEEecCCEEeeecCCCc
Confidence 57899999999999998874
No 365
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=47.32 E-value=57 Score=19.03 Aligned_cols=37 Identities=11% Similarity=0.255 Sum_probs=24.3
Q ss_pred CcEEEEECCCCceEEEE--eCCCCCCeEEEEcCCCcEEEEc
Q 035275 10 GSVYAWSVRSGKEVASW--MSFDTEPPVIKWTPGSLMFVTG 48 (69)
Q Consensus 10 ~~v~~wd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~s~ 48 (69)
..|++||..+.+ +.- .+-.+.|..+.|..+..+++.|
T Consensus 16 ~~lC~yd~~~~q--W~~~g~~i~G~V~~l~~~~~~~Llv~G 54 (281)
T PF12768_consen 16 PGLCLYDTDNSQ--WSSPGNGISGTVTDLQWASNNQLLVGG 54 (281)
T ss_pred CEEEEEECCCCE--eecCCCCceEEEEEEEEecCCEEEEEE
Confidence 368999986543 221 2345678899988666777765
No 366
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=43.87 E-value=37 Score=23.07 Aligned_cols=42 Identities=10% Similarity=0.212 Sum_probs=22.0
Q ss_pred EEEEeCCCcEEEEECCCCceEEE-E-eCCCCCCeEEEEcCCCcE
Q 035275 3 VISGSGDGSVYAWSVRSGKEVAS-W-MSFDTEPPVIKWTPGSLM 44 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~-~-~~~~~~v~~v~~~~~~~~ 44 (69)
+-+...+|.|.+|-+..+.=.-. + .-..+.|.+++|+.+|.-
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k 129 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK 129 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE
Confidence 34455667888888766530000 0 112344566777766543
No 367
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=41.16 E-value=85 Score=21.11 Aligned_cols=56 Identities=9% Similarity=0.121 Sum_probs=28.1
Q ss_pred EEEEEeCCCcEEEEECCC--CceE-EEEeCCCCCCeEEEEcCCC------cEEEEcCCcEEEEcC
Q 035275 2 FVISGSGDGSVYAWSVRS--GKEV-ASWMSFDTEPPVIKWTPGS------LMFVTGSSELSFWIP 57 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~--~~~~-~~~~~~~~~v~~v~~~~~~------~~~~s~~~~~~~~~~ 57 (69)
+++.++....|.++-... .+.. ..-..+.+-|.+|+|.++. ..++++|-...+|.+
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~ 243 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF 243 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence 455555555666665533 2211 1112355678899997643 245555444444433
No 368
>KOG3535 consensus Adaptor protein Disabled [Signal transduction mechanisms]
Probab=40.07 E-value=90 Score=19.77 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=19.1
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEc
Q 035275 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT 39 (69)
Q Consensus 4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~ 39 (69)
+..+-+| |+|.|-.+|... |..+|..++|.
T Consensus 96 l~Is~~G-IKI~DEKtGav~-----H~hpV~~ISfI 125 (557)
T KOG3535|consen 96 LQISIDG-IKILDEKTGAVL-----HNHPVSRISFI 125 (557)
T ss_pred EEEeecc-eEEeecccccee-----ccCccceeeee
Confidence 3444444 888887777543 66677777765
No 369
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=38.84 E-value=28 Score=15.72 Aligned_cols=14 Identities=29% Similarity=0.895 Sum_probs=10.3
Q ss_pred cCCcEEEEcCCCCC
Q 035275 48 GSSELSFWIPDLSK 61 (69)
Q Consensus 48 ~~~~~~~~~~~~~~ 61 (69)
|-..+.||++|+..
T Consensus 16 GLRPVqiWVPDtr~ 29 (65)
T PF11455_consen 16 GLRPVQIWVPDTRR 29 (65)
T ss_pred CCCcceeeCCCCCC
Confidence 34568899998764
No 370
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=37.93 E-value=54 Score=16.09 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=34.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEE-eCC-CC-CCeEEEEcCCCcEEEEcCCcEEEEc
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASW-MSF-DT-EPPVIKWTPGSLMFVTGSSELSFWI 56 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~-~~~-~~-~v~~v~~~~~~~~~~s~~~~~~~~~ 56 (69)
+.+.-..||.+.+++.. +..+..- ... .+ ....+.+..+|.+++..+....+|.
T Consensus 21 ~~L~l~~dGnLvl~~~~-~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~ 77 (114)
T PF01453_consen 21 YTLILQSDGNLVLYDSN-GSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQ 77 (114)
T ss_dssp EEEEEETTSEEEEEETT-TEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEE
T ss_pred ccceECCCCeEEEEcCC-CCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEe
Confidence 34455678999999865 3445444 212 22 3566778889998888766777885
No 371
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=37.31 E-value=1e+02 Score=19.09 Aligned_cols=26 Identities=15% Similarity=0.457 Sum_probs=12.8
Q ss_pred EEEEEeCCC--cEEEEECCCCceEEEEeC
Q 035275 2 FVISGSGDG--SVYAWSVRSGKEVASWMS 28 (69)
Q Consensus 2 ~~~s~~~d~--~v~~wd~~~~~~~~~~~~ 28 (69)
+++++..|| .+..-|+.+++ +.++..
T Consensus 50 llF~s~~dg~~nly~lDL~t~~-i~QLTd 77 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATGE-ITQLTD 77 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-E-EEE---
T ss_pred EEEEeccCCCcceEEEEcccCE-EEECcc
Confidence 456666666 45566676665 556643
No 372
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=37.25 E-value=44 Score=21.46 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=24.8
Q ss_pred EEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC-cEEEE
Q 035275 14 AWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS-ELSFW 55 (69)
Q Consensus 14 ~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~-~~~~~ 55 (69)
+|+..+...........-++..+++||.|..+++... .+.+|
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~ 58 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECW 58 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhccceEEc
Confidence 4554444333333335567788899999887776532 35554
No 373
>PRK00339 minC septum formation inhibitor; Reviewed
Probab=37.07 E-value=44 Score=19.07 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=23.4
Q ss_pred CCCcEEEEECCCCceEEEEeCC-CCCCeEEEEcCCC
Q 035275 8 GDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPGS 42 (69)
Q Consensus 8 ~d~~v~~wd~~~~~~~~~~~~~-~~~v~~v~~~~~~ 42 (69)
.||.|.||..-.|+.+-...+. ..+|.|..+.|..
T Consensus 177 AdGnIhVyG~LRGrA~AGa~Gd~~ArIf~~~l~ael 212 (249)
T PRK00339 177 ADGNIHVYGPMRGRALAGIKGDTKARIFCQQLEAEL 212 (249)
T ss_pred eCCCEEEEEEcccEEEecCCCCCccEEEeccCCccE
Confidence 3678888888777765555444 4567777777763
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.03 E-value=1.3e+02 Score=19.83 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=37.5
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC---------cEEEEcCCcEEEEcCCCCCc
Q 035275 4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS---------LMFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~---------~~~~s~~~~~~~~~~~~~~~ 62 (69)
.++..-..++-.|+..|+.+..|.-+.. |.-+++.|+. .++...+..+.-|.++++..
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~ 416 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK 416 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc
Confidence 4444445677778888988888877766 6666777652 33444455677777666554
No 375
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.88 E-value=1.5e+02 Score=20.62 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=30.7
Q ss_pred EEEEEeCCCc-----EEEEECCCC---c-eE-E---EEeC-----CCCCCeEEEEcCCCcEEEEcCCc
Q 035275 2 FVISGSGDGS-----VYAWSVRSG---K-EV-A---SWMS-----FDTEPPVIKWTPGSLMFVTGSSE 51 (69)
Q Consensus 2 ~~~s~~~d~~-----v~~wd~~~~---~-~~-~---~~~~-----~~~~v~~v~~~~~~~~~~s~~~~ 51 (69)
+|++.++|+. ++||+++.. + +. . ...+ ...++.+++.+.+-..++.|-.+
T Consensus 79 ~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~n 146 (933)
T KOG2114|consen 79 FLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTN 146 (933)
T ss_pred EEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecC
Confidence 5666666654 889998542 2 21 1 1112 34567788888887788887444
No 376
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=35.73 E-value=80 Score=18.50 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=16.6
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEE
Q 035275 24 ASWMSFDTEPPVIKWTPGSLMFV 46 (69)
Q Consensus 24 ~~~~~~~~~v~~v~~~~~~~~~~ 46 (69)
.+..+.+.+|..++|+|....+-
T Consensus 252 STv~~~kYPvtgfQWHPEKnafE 274 (340)
T KOG1559|consen 252 STVESKKYPVTGFQWHPEKNAFE 274 (340)
T ss_pred EeecceeccceeeeecCccCccc
Confidence 34567778899999999765443
No 377
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=35.35 E-value=7.6 Score=13.77 Aligned_cols=6 Identities=17% Similarity=0.612 Sum_probs=3.6
Q ss_pred EcCCCc
Q 035275 38 WTPGSL 43 (69)
Q Consensus 38 ~~~~~~ 43 (69)
|||+|.
T Consensus 8 FSp~Gr 13 (23)
T PF10584_consen 8 FSPDGR 13 (23)
T ss_dssp BBTTSS
T ss_pred ECCCCe
Confidence 566654
No 378
>PF13964 Kelch_6: Kelch motif
Probab=34.30 E-value=40 Score=13.49 Aligned_cols=8 Identities=25% Similarity=0.908 Sum_probs=3.7
Q ss_pred CCcEEEEE
Q 035275 9 DGSVYAWS 16 (69)
Q Consensus 9 d~~v~~wd 16 (69)
++.|.++.
T Consensus 11 ~~~iyv~G 18 (50)
T PF13964_consen 11 GGKIYVFG 18 (50)
T ss_pred CCEEEEEC
Confidence 34455544
No 379
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=31.39 E-value=1.4e+02 Score=18.89 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=33.0
Q ss_pred EEEEEeCCCcEEEEECCCCc--e---EEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCC
Q 035275 2 FVISGSGDGSVYAWSVRSGK--E---VASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPD 58 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~--~---~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~ 58 (69)
+|+.+-..+.|....++... . ...+....++++.|...|++ .+.+..|....+.-.+
T Consensus 371 llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~~~RiRdv~~~pDg~~iy~~td~~g~~~~~~ 433 (454)
T TIGR03606 371 LLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKTNNRYRDVIASPDGNVLYVATDNFGNVQKDD 433 (454)
T ss_pred EEEEEcCCCeEEEEEecCCcceecceeEEeecCCCeeEEEEECCCCCEEEEEEcCCCccccCC
Confidence 35555555567666664331 1 12222225799999999997 6666666554444443
No 380
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=31.20 E-value=1.1e+02 Score=17.54 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=23.8
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCC---------CCCeEEEEcCCCcEEEEcCCc
Q 035275 4 ISGSGDGSVYAWSVRSGKEVASWMSFD---------TEPPVIKWTPGSLMFVTGSSE 51 (69)
Q Consensus 4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~---------~~v~~v~~~~~~~~~~s~~~~ 51 (69)
+-..++..|...| .+|+....+.-.. .+--.|+|.+++.+++++.-+
T Consensus 187 iLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 187 ILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp EEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred EEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 3345556777778 4566544332111 245689999999988887544
No 381
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=31.08 E-value=86 Score=16.39 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=14.0
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 035275 2 FVISGSGDGSVYAWSVRSG 20 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~ 20 (69)
.|+++...|+|.+++....
T Consensus 12 cL~~aT~~gKV~IH~ph~~ 30 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHER 30 (136)
T ss_pred eEEEEecCCEEEEECCCcc
Confidence 3667777789999987643
No 382
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.95 E-value=1.9e+02 Score=20.22 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=31.5
Q ss_pred cEEEEECCCCce-EEEEeCCCCCCeEEEEcCCCc-EEEEcCCcEEEEcCCC
Q 035275 11 SVYAWSVRSGKE-VASWMSFDTEPPVIKWTPGSL-MFVTGSSELSFWIPDL 59 (69)
Q Consensus 11 ~v~~wd~~~~~~-~~~~~~~~~~v~~v~~~~~~~-~~~s~~~~~~~~~~~~ 59 (69)
.|..|.+....+ +..+..|...++|..+++... +++++++-+.++..+.
T Consensus 194 ~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~ 244 (933)
T KOG2114|consen 194 QVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG 244 (933)
T ss_pred eeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCC
Confidence 477777753332 344566777888999987655 5555565566665543
No 383
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=30.28 E-value=1.3e+02 Score=18.29 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=14.1
Q ss_pred eCCCcEEEEECCCCceEEEEe
Q 035275 7 SGDGSVYAWSVRSGKEVASWM 27 (69)
Q Consensus 7 ~~d~~v~~wd~~~~~~~~~~~ 27 (69)
..++.+.+||..+++.+....
T Consensus 309 ~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 309 AGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTTTEEEEEETTT--EEEEE-
T ss_pred CCCCeEEEEeCcCCcEEeehh
Confidence 346789999999998766653
No 384
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=29.55 E-value=68 Score=14.69 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=17.2
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEE
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASW 26 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~ 26 (69)
+.+....++.+.+.+.+....+..+
T Consensus 11 ~~~~~~~~~Yl~l~~~~~~G~v~~L 35 (83)
T PF14326_consen 11 FRVTSNRDGYLYLFYIDADGKVTLL 35 (83)
T ss_pred EEEEeCCCeEEEEEEECCCCCEEEE
Confidence 3466678888888888765545555
No 385
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=29.26 E-value=1.2e+02 Score=17.40 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=19.8
Q ss_pred EEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275 35 VIKWTPGSLMFVTGSSELSFWIPDLSK 61 (69)
Q Consensus 35 ~v~~~~~~~~~~s~~~~~~~~~~~~~~ 61 (69)
.+-..|++.+++.+.....++.+..++
T Consensus 174 ~~~llPdG~lFi~an~~s~i~d~~~n~ 200 (243)
T PF07250_consen 174 FVHLLPDGNLFIFANRGSIIYDYKTNT 200 (243)
T ss_pred eEEEcCCCCEEEEEcCCcEEEeCCCCe
Confidence 344568899999888887887776554
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=29.03 E-value=1.3e+02 Score=17.63 Aligned_cols=54 Identities=7% Similarity=0.122 Sum_probs=26.7
Q ss_pred EeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCc
Q 035275 6 GSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 62 (69)
Q Consensus 6 ~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~ 62 (69)
...++...+||..+-+.+.++.... .==.+. .++..++.+|++-.++..|..++
T Consensus 106 TWk~~~~f~yd~~tl~~~~~~~y~~-EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 106 TWKEGTGFVYDPNTLKKIGTFPYPG-EGWGLT--SDGKRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp ESSSSEEEEEETTTTEEEEEEE-SS-S--EEE--ECSSCEEEE-SSSEEEEE-TTT-
T ss_pred EecCCeEEEEccccceEEEEEecCC-cceEEE--cCCCEEEEECCccceEEECCccc
Confidence 3556788899998777666664332 112333 34444454444444444444444
No 387
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=27.56 E-value=61 Score=20.23 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=15.4
Q ss_pred EEEEeCCCcEEEEECCC
Q 035275 3 VISGSGDGSVYAWSVRS 19 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~ 19 (69)
+++|+.|..+.+||++.
T Consensus 344 lvtgGTDnHlvLvDLr~ 360 (477)
T KOG2467|consen 344 LVTGGTDNHLVLVDLRP 360 (477)
T ss_pred EecCCccceEEEEeccc
Confidence 78999999999999975
No 388
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=27.22 E-value=79 Score=17.91 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=23.4
Q ss_pred CCCcEEEEECCCCceEEEEeCC-CCCCeEEEEcCCCcEE
Q 035275 8 GDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPGSLMF 45 (69)
Q Consensus 8 ~d~~v~~wd~~~~~~~~~~~~~-~~~v~~v~~~~~~~~~ 45 (69)
.||.|.+|..-.|..+-...+. ...|.|..+.|....+
T Consensus 167 A~GnI~VyG~LRG~a~AG~~Gd~~A~I~a~~l~pelvsI 205 (239)
T PRK05177 167 AGGSIHVYGALRGRAIAGAAGNPSARIFCRKLEAELLAI 205 (239)
T ss_pred eCCCEEEEEEcceEEEeCCCCCCccEEEeccCCceEEEE
Confidence 3577777777666654444333 4567777777764444
No 389
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=26.89 E-value=74 Score=15.24 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=16.3
Q ss_pred EEEEcCCCcEEEEcCCc-EEEEcCCCCCcC
Q 035275 35 VIKWTPGSLMFVTGSSE-LSFWIPDLSKLG 63 (69)
Q Consensus 35 ~v~~~~~~~~~~s~~~~-~~~~~~~~~~~~ 63 (69)
+|...-.+..+|.|+.+ -++|....+...
T Consensus 2 ~v~~~~~g~~lAiGG~~g~~~Wfvtt~~v~ 31 (86)
T PF11090_consen 2 CVTIEHKGRPLAIGGNNGGCLWFVTTNKVK 31 (86)
T ss_pred eEEEecCCeEEEEccccCCeEEEEECcHHh
Confidence 34455566667776554 666655444433
No 390
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=26.50 E-value=81 Score=15.18 Aligned_cols=19 Identities=11% Similarity=0.351 Sum_probs=11.1
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 035275 2 FVISGSGDGSVYAWSVRSG 20 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~ 20 (69)
.++....|++|..|-+..|
T Consensus 76 ~LAiv~~DsTiVYY~i~~G 94 (101)
T PF09631_consen 76 LLAIVDDDSTIVYYKIHDG 94 (101)
T ss_dssp EEEEE-TTS-EEEEEEE--
T ss_pred EEEEEcCCCCEEEEEEeCC
Confidence 3567778888888877655
No 391
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=26.20 E-value=1.6e+02 Score=17.90 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=20.6
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCC
Q 035275 3 VISGSGDGSVYAWSVRSGKEVASWMSFD 30 (69)
Q Consensus 3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~ 30 (69)
|+.---||+|..+|..++..+..+....
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCC
Confidence 4445568999999998888777765443
No 392
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=26.06 E-value=71 Score=17.82 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=22.1
Q ss_pred CCCcEEEEECCCCceEEEEeC-CCCCCeEEEEcCCC
Q 035275 8 GDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGS 42 (69)
Q Consensus 8 ~d~~v~~wd~~~~~~~~~~~~-~~~~v~~v~~~~~~ 42 (69)
.+|.|.+|..-.|..+-...+ ...+|.|.++.|..
T Consensus 148 A~GnI~V~G~LrG~a~AG~~Gd~~A~I~a~~l~~el 183 (221)
T PRK04804 148 ADGSIHIYGTLRGRAIAGASGDKEAVIICHSLEAEL 183 (221)
T ss_pred eCCCEEEEEEeccEEEecCCCCCccEEEeccCCccE
Confidence 357788887766665444433 34667777777763
No 393
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=25.72 E-value=98 Score=17.88 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=22.4
Q ss_pred CCCcEEEEECCCCceEEEEeCC-CCCCeEEEEcCCC
Q 035275 8 GDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPGS 42 (69)
Q Consensus 8 ~d~~v~~wd~~~~~~~~~~~~~-~~~v~~v~~~~~~ 42 (69)
.||.|.+|..-.|+.+-...+. ..+|.|..+.|..
T Consensus 176 A~G~i~v~g~lrG~a~AG~~g~~~a~I~~~~~~~el 211 (248)
T PRK04596 176 ADGSIHIYGTLRGRALAGAQGNPDARIFCRDFHAEL 211 (248)
T ss_pred eCCCEEEEEEeccEEEecCCCCCccEEEeecCCccE
Confidence 3577888877767655444443 4567777777753
No 394
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=24.63 E-value=1.6e+02 Score=17.43 Aligned_cols=26 Identities=8% Similarity=0.327 Sum_probs=14.2
Q ss_pred CCCCCeEEEEcCCCcEEEEc-CCcEEE
Q 035275 29 FDTEPPVIKWTPGSLMFVTG-SSELSF 54 (69)
Q Consensus 29 ~~~~v~~v~~~~~~~~~~s~-~~~~~~ 54 (69)
-..++..+.|.|++.+...+ +..+.+
T Consensus 185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~ 211 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLARGGQIQF 211 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEETTTEEEE
T ss_pred ccceehhceecCCCCEEEEeCCcEEEE
Confidence 34678999999987654433 333433
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=24.54 E-value=2e+02 Score=18.41 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=19.5
Q ss_pred CcEEEEECCCCceEEEEe-CCCCC-CeEEEEcC
Q 035275 10 GSVYAWSVRSGKEVASWM-SFDTE-PPVIKWTP 40 (69)
Q Consensus 10 ~~v~~wd~~~~~~~~~~~-~~~~~-v~~v~~~~ 40 (69)
..+.+||+.+.+.+..+. +..+. ...++|..
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH 254 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLH 254 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-S
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecC
Confidence 579999999988766663 33343 34777753
No 396
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=23.97 E-value=1e+02 Score=18.43 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=19.6
Q ss_pred cEEEEECCCCceEEE-EeCCCCCCeEEEEcCCCcE
Q 035275 11 SVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLM 44 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~ 44 (69)
.+.+.|+.+++.+.. +.... ...+.|.+++..
T Consensus 151 ~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~ 183 (414)
T PF02897_consen 151 TLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKG 183 (414)
T ss_dssp EEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSE
T ss_pred EEEEEECCCCcCcCCcccccc--cceEEEeCCCCE
Confidence 588999988865432 22211 124889988544
No 397
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=23.55 E-value=67 Score=12.63 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=7.5
Q ss_pred EeCCCcEEEEE
Q 035275 6 GSGDGSVYAWS 16 (69)
Q Consensus 6 ~~~d~~v~~wd 16 (69)
-..+|.+.++|
T Consensus 10 IfY~G~V~Vfd 20 (36)
T PF06200_consen 10 IFYGGQVCVFD 20 (36)
T ss_pred EEECCEEEEeC
Confidence 34567788877
No 398
>PF13130 DUF3952: Domain of unknown function (DUF3952)
Probab=22.96 E-value=57 Score=16.17 Aligned_cols=13 Identities=46% Similarity=0.669 Sum_probs=9.4
Q ss_pred EEEEEeCCCcEEE
Q 035275 2 FVISGSGDGSVYA 14 (69)
Q Consensus 2 ~~~s~~~d~~v~~ 14 (69)
.+.|+|+||...+
T Consensus 30 tVMSASDdGYAyV 42 (107)
T PF13130_consen 30 TVMSASDDGYAYV 42 (107)
T ss_pred heeccCCCceeEE
Confidence 4788889986554
No 399
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.95 E-value=2.7e+02 Score=19.29 Aligned_cols=52 Identities=15% Similarity=0.067 Sum_probs=29.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEE-EE--eCCCCCCeEEEEcCCCcEEEEcCCcEE
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVA-SW--MSFDTEPPVIKWTPGSLMFVTGSSELS 53 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~-~~--~~~~~~v~~v~~~~~~~~~~s~~~~~~ 53 (69)
.|++...+|++.+|++....... +. ..-...|..+.+...|.++.+.++++.
T Consensus 96 eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~ 150 (829)
T KOG2280|consen 96 ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVI 150 (829)
T ss_pred eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecCCcEE
Confidence 46677889999999985322111 11 112233444555557777777666544
No 400
>PRK00030 minC septum formation inhibitor; Provisional
Probab=22.71 E-value=1.1e+02 Score=18.20 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=21.8
Q ss_pred CCCcEEEEECCCCceEEEEeCC-CCCCeEEEEcCCC
Q 035275 8 GDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPGS 42 (69)
Q Consensus 8 ~d~~v~~wd~~~~~~~~~~~~~-~~~v~~v~~~~~~ 42 (69)
.||.|.||..-.|..+-...+. ..+|.|..+.|..
T Consensus 218 AdGnIhVyG~LrGra~AG~~Gd~~A~If~~~l~ael 253 (292)
T PRK00030 218 ADGNVHVYGPLRGKAMAGARGDTSARIFTTQLDAEL 253 (292)
T ss_pred eCCCEEEEEEcccEEEecCCCCCccEEEeccCCceE
Confidence 3577888887767655444443 4566676666653
No 401
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=22.02 E-value=1.2e+02 Score=17.35 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=22.0
Q ss_pred CCCcEEEEECCCCceEEEEeCC-CCCCeEEEEcCCC
Q 035275 8 GDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPGS 42 (69)
Q Consensus 8 ~d~~v~~wd~~~~~~~~~~~~~-~~~v~~v~~~~~~ 42 (69)
.+|.|.+|..-.|..+-...+. ..+|.|..+.|..
T Consensus 161 A~G~i~v~G~lrG~a~AG~~Gd~~A~If~~~l~ael 196 (235)
T PRK04516 161 ADGNIHIYAPMRGRALAGAKGDTSARIFIHSMQAEL 196 (235)
T ss_pred eCCCEEEEEEccceEEecCCCCCccEEEeccCCccE
Confidence 3577888877667655444433 4566777777653
No 402
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=21.86 E-value=63 Score=11.68 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=4.9
Q ss_pred EEEEcCCcEEEE
Q 035275 44 MFVTGSSELSFW 55 (69)
Q Consensus 44 ~~~s~~~~~~~~ 55 (69)
+.++.+.++..|
T Consensus 12 ~al~~~g~v~~w 23 (30)
T PF13540_consen 12 CALTSDGEVYCW 23 (30)
T ss_dssp EEEE-TTEEEEE
T ss_pred EEEEcCCCEEEE
Confidence 333444444444
No 403
>PF15644 Tox-PL: Papain fold toxin 1; PDB: 3B21_A.
Probab=21.61 E-value=1.2e+02 Score=14.76 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=9.0
Q ss_pred eCCCcEEEEECCCCc
Q 035275 7 SGDGSVYAWSVRSGK 21 (69)
Q Consensus 7 ~~d~~v~~wd~~~~~ 21 (69)
..+|.|.+||..++.
T Consensus 95 ~~~G~i~~~D~Q~G~ 109 (111)
T PF15644_consen 95 NQNGKIVFLDPQSGK 109 (111)
T ss_dssp EE-SSEEEEBTTTTB
T ss_pred eCCCeEEEEeCCCCC
Confidence 456667777766554
No 404
>PRK03511 minC septum formation inhibitor; Reviewed
Probab=21.49 E-value=1e+02 Score=17.38 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=20.8
Q ss_pred CCCcEEEEECCCCceEEEEeC-CCCCCeEEEEcCCCc
Q 035275 8 GDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSL 43 (69)
Q Consensus 8 ~d~~v~~wd~~~~~~~~~~~~-~~~~v~~v~~~~~~~ 43 (69)
.||.|.+|..-.|..+-...+ ....|.|..+.|...
T Consensus 156 A~GnI~V~G~LrG~a~AG~~Gd~~A~Ifa~~l~aelv 192 (228)
T PRK03511 156 ADGNIHVYGMMRGRALAGASGDRECQIFCTHLMAELV 192 (228)
T ss_pred eCCCEEEEEEeccEEEecCCCCCccEEEeccCCccEE
Confidence 356777777666655433333 335566777776543
No 405
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=21.26 E-value=1.9e+02 Score=16.90 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=18.9
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEe
Q 035275 2 FVISGSGDGSVYAWSVRSGKEVASWM 27 (69)
Q Consensus 2 ~~~s~~~d~~v~~wd~~~~~~~~~~~ 27 (69)
.++.|.++|.|.+.|...-..+.+..
T Consensus 197 cLViGTE~~~i~iLd~~af~il~~~~ 222 (257)
T PF14779_consen 197 CLVIGTESGEIYILDPQAFTILKQVQ 222 (257)
T ss_pred eEEEEecCCeEEEECchhheeEEEEe
Confidence 57888999999998876555444443
No 406
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=21.10 E-value=1.5e+02 Score=15.60 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=11.7
Q ss_pred EEEeCCCcEEEEECCCCceE
Q 035275 4 ISGSGDGSVYAWSVRSGKEV 23 (69)
Q Consensus 4 ~s~~~d~~v~~wd~~~~~~~ 23 (69)
+..|-|| |.+.|..++..+
T Consensus 57 L~IS~dG-i~v~D~~T~~ll 75 (139)
T cd01215 57 LQINIDG-IKVLDEKTGAVL 75 (139)
T ss_pred EEEccCC-EEEEcCCCCcEE
Confidence 3445555 777777766654
No 407
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=21.08 E-value=1.3e+02 Score=19.64 Aligned_cols=43 Identities=9% Similarity=0.181 Sum_probs=28.0
Q ss_pred EeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275 6 GSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG 48 (69)
Q Consensus 6 ~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~ 48 (69)
+...|.+.+|+..+.+......-|..++.+.++.+.+..+..+
T Consensus 135 g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 135 GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred cccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 3345667787776655443344488888899998876554443
No 408
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=20.09 E-value=1.5e+02 Score=15.33 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=14.2
Q ss_pred cEEEEECCCCceEEEE--eCCC
Q 035275 11 SVYAWSVRSGKEVASW--MSFD 30 (69)
Q Consensus 11 ~v~~wd~~~~~~~~~~--~~~~ 30 (69)
.|.+||+.+|..+.+. .+..
T Consensus 43 ~V~V~Nv~NG~Rf~TYvI~G~~ 64 (126)
T TIGR00223 43 KVDIVNVNNGKRFSTYAIAGKR 64 (126)
T ss_pred EEEEEECCCCcEEEEEEEEcCC
Confidence 6899999998765543 4443
Done!