BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035276
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670
PE=2 SV=2
Length = 349
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 37/46 (80%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
VLCS KDDG TVFSGGCDKQ K WPLLSGGQPV VAMH+ PI +
Sbjct: 75 VLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAM 120
>sp|Q5RF99|RAEL1_PONAB mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1
Length = 368
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
VL DDG VF+ CDK K W LS Q + +A HDAP+KTI +
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWI 136
>sp|P78406|RAE1L_HUMAN mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1
Length = 368
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
VL DDG VF+ CDK K W LS Q + +A HDAP+KTI +
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWI 136
>sp|Q4R6D2|RAE1L_MACFA mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1
Length = 368
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
VL DDG VF+ CDK K W LS Q + +A HDAP+KTI +
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWI 136
>sp|P40066|GLE2_YEAST Nucleoporin GLE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=GLE2 PE=1 SV=1
Length = 365
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
S VLC+ +DG V SGGCD +K + + S GQ + MH APIK +R +
Sbjct: 80 SSPVLCTRWSNDGTKVASGGCDNALKLYDIAS-GQTQQIGMHSAPIKVLRFV 130
>sp|Q3SWS8|RAE1L_RAT mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1
Length = 368
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
VL DDG VF+ CDK K W L S Q + +A HDAP+KTI +
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLNS-NQAIQIAQHDAPVKTIHWI 136
>sp|Q8C570|RAE1L_MOUSE mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1
Length = 368
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
VL DDG VF+ CDK K W L S Q + +A HDAP+KTI +
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLNS-NQAIQIAQHDAPVKTIHWI 136
>sp|A5GFN6|RAEL1_PIG mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1
Length = 368
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
VL DDG VF+ CDK K W L S Q + +A HDAP+KTI +
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLNS-NQAIQIAQHDAPVKTIHWI 136
>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1
Length = 368
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
VL DDG VF+ CDK K W L S Q + +A HDAPIKT+ +
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLNS-NQSIQIAQHDAPIKTVHWV 136
>sp|Q5E9A4|RAE1L_BOVIN mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1
Length = 368
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
VL DDG VF+ CDK K W L S Q + +A HDAP+KT+ +
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLNS-NQAIQIAQHDAPVKTVHWI 136
>sp|Q7ZWF0|RAE1L_DANRE mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2
Length = 368
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
VL DDG VF+ CDK K W L S Q + +A H+ PI+TI +
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLNS-NQAIQIAQHEGPIRTIHWI 136
>sp|Q80ZD0|GBB5_TAMST Guanine nucleotide-binding protein subunit beta-5 OS=Tamias
striatus GN=GNB5 PE=2 SV=1
Length = 353
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 20 EVLCSTL--KDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67
+VLC L + G T SGGCDK+ W + SG H++ I ++R
Sbjct: 197 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVR 246
>sp|Q6PNB6|GBB5_RABIT Guanine nucleotide-binding protein subunit beta-5 OS=Oryctolagus
cuniculus GN=GNB5 PE=2 SV=1
Length = 353
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 20 EVLCSTL--KDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67
+VLC L + G T SGGCDK+ W + SG H++ I ++R
Sbjct: 197 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVR 246
>sp|Q5RDY7|GBB5_PONAB Guanine nucleotide-binding protein subunit beta-5 OS=Pongo abelii
GN=GNB5 PE=2 SV=1
Length = 353
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 20 EVLCSTL--KDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67
+VLC L + G T SGGCDK+ W + SG H++ I ++R
Sbjct: 197 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVR 246
>sp|O14775|GBB5_HUMAN Guanine nucleotide-binding protein subunit beta-5 OS=Homo sapiens
GN=GNB5 PE=1 SV=2
Length = 395
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 20 EVLCSTL--KDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67
+VLC L + G T SGGCDK+ W + SG H++ I ++R
Sbjct: 239 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVR 288
>sp|Q54SF9|MHCKD_DICDI Myosin heavy chain kinase D OS=Dictyostelium discoideum GN=mhkD
PE=3 SV=1
Length = 941
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 9/41 (21%)
Query: 14 NPNKSIEVLCST---------LKDDGITVFSGGCDKQVKTW 45
N N+ I+++ ST L DG +FSGGCD +K W
Sbjct: 896 NQNEPIKIISSTKAHRSGVNSLATDGKRIFSGGCDNLIKVW 936
>sp|Q86TI4|WDR86_HUMAN WD repeat-containing protein 86 OS=Homo sapiens GN=WDR86 PE=2 SV=3
Length = 376
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
VLC L G T F+G D ++ W +LSG Q + H + + L+
Sbjct: 196 VLCLVLDTPGHTAFTGSTDATIRAWDILSGEQLRVFREHRGSVICLELV 244
>sp|P62882|GBB5_RAT Guanine nucleotide-binding protein subunit beta-5 OS=Rattus
norvegicus GN=Gnb5 PE=2 SV=1
Length = 353
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 20 EVLCSTL--KDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67
+VLC L + G T SGGCDK+ W + SG H++ + ++R
Sbjct: 197 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR 246
>sp|P62881|GBB5_MOUSE Guanine nucleotide-binding protein subunit beta-5 OS=Mus musculus
GN=Gnb5 PE=1 SV=1
Length = 395
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 20 EVLCSTL--KDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67
+VLC L + G T SGGCDK+ W + SG H++ + ++R
Sbjct: 239 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR 288
>sp|A7THX0|MDV1_VANPO Mitochondrial division protein 1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=MDV1 PE=3 SV=1
Length = 706
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 24 STLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
++LK D + SG DK ++TW L +G + A +D+P+ +I
Sbjct: 602 TSLKFDSYNLISGSLDKSIRTWDLRTGSLSDLFA-YDSPVYSI 643
>sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans
GN=T10F2.4 PE=3 SV=2
Length = 492
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68
T + NK I + L D IT S D ++ W I+ +H AP+ I L
Sbjct: 246 TFKGHNKKINAV--VLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPVTDISL 301
>sp|B2VR76|ERB1_PYRTR Ribosome biogenesis protein erb1 OS=Pyrenophora tritici-repentis
(strain Pt-1C-BFP) GN=erb1 PE=3 SV=1
Length = 781
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52
V C ++ +GI V SGG D V+ W LL+G Q
Sbjct: 436 VRCVSIDPNGIFVASGGDDGYVRIWELLTGRQ 467
>sp|P38129|TAF5_YEAST Transcription initiation factor TFIID subunit 5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF5 PE=1
SV=1
Length = 798
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
+V C + +G VF+G DK + W + +G + H AP+ +I
Sbjct: 611 DVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISI 657
>sp|Q54PE0|PWP2_DICDI Periodic tryptophan protein 2 homolog OS=Dictyostelium discoideum
GN=pwp2 PE=3 SV=1
Length = 922
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 29 DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67
DG T+ +GG D +VK W SG + H+ P+ ++
Sbjct: 369 DGQTIATGGEDGKVKIWNTTSGYCYITFTEHEGPVTAVK 407
>sp|P20053|PRP4_YEAST U4/U6 small nuclear ribonucleoprotein PRP4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PRP4 PE=1
SV=1
Length = 465
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
V + + DG V SGG D W + SG + + +A H PI T+
Sbjct: 310 VFSLSFQCDGSLVCSGGMDSLSMLWDIRSGSKVMTLAGHSKPIYTV 355
>sp|Q6PE01|SNR40_MOUSE U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus
GN=Snrnp40 PE=2 SV=1
Length = 358
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 7 AAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPL 47
AAV T QN + +VL T D + SGG D +K W L
Sbjct: 186 AAVQTFQN---TYQVLAVTFNDTSDQIISGGIDNDIKVWDL 223
>sp|Q0UN56|ERB1_PHANO Ribosome biogenesis protein ERB1 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=ERB1 PE=3 SV=3
Length = 782
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52
V C ++ GI V SGG D V+ W LL+G Q
Sbjct: 437 VRCVSVDPQGIFVASGGDDGYVRIWELLTGRQ 468
>sp|Q2HJH6|SNR40_BOVIN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus
GN=SNRNP40 PE=2 SV=1
Length = 358
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 7 AAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPL 47
AA+ T QN + +VL T D + SGG D +K W L
Sbjct: 186 AAIQTFQN---TYQVLAVTFNDTSDQIISGGIDNDIKVWDL 223
>sp|Q93454|NPP17_CAEEL Nucleoporin-17 OS=Caenorhabditis elegans GN=npp-17 PE=1 SV=1
Length = 373
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 28 DDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
+D +F DK+ + W L S Q +V HD P+KT +
Sbjct: 99 EDSSKIFIACADKEARLWDLASN-QVAVVGTHDGPVKTCHWI 139
>sp|Q8BHB4|WDR3_MOUSE WD repeat-containing protein 3 OS=Mus musculus GN=Wdr3 PE=2 SV=1
Length = 942
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
+ VLC + DG + +G D+ VK W L G + HD + +R +
Sbjct: 591 LPVLCMDISHDGALIATGSADRNVKIWGLDFGDCHRSLFAHDDSVMYLRFV 641
>sp|O02482|UNC37_CAEEL Transcription factor unc-37 OS=Caenorhabditis elegans GN=unc-37
PE=1 SV=1
Length = 612
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 23 CSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHD 60
C L DG ++SGG D V+ W L Q VA HD
Sbjct: 463 CLDLSKDGTKLWSGGLDNSVRCWDL---AQRKEVAKHD 497
>sp|Q96DI7|SNR40_HUMAN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens
GN=SNRNP40 PE=1 SV=1
Length = 357
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 7 AAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPL 47
AA+ T QN + +VL T D + SGG D +K W L
Sbjct: 185 AAIQTFQN---TYQVLAVTFNDTSDQIISGGIDNDIKVWDL 222
>sp|Q5RF51|SNR40_PONAB U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii
GN=SNRNP40 PE=2 SV=1
Length = 357
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 7 AAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPL 47
AA+ T QN + +VL T D + SGG D +K W L
Sbjct: 185 AAIQTFQN---TYQVLAVTFNDTSDQIISGGIDNDIKVWDL 222
>sp|Q54S79|WDR3_DICDI WD repeat-containing protein 3 homolog OS=Dictyostelium discoideum
GN=wdr3 PE=3 SV=1
Length = 942
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
+ V+C + DD + +G DK +K W L G HD I + +
Sbjct: 574 LPVMCLDISDDSTLIITGSADKNIKIWGLDYGDCHKSFFAHDDSIMQVSFI 624
>sp|A6QX61|ERB1_AJECN Ribosome biogenesis protein ERB1 OS=Ajellomyces capsulata (strain
NAm1 / WU24) GN=ERB1 PE=3 SV=2
Length = 788
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 30 GITVFSGGCDKQVKTWPLLSGGQPVIVAMHD-APIKTIR 67
G+ + SGG D V+ W LL+G Q V + D P+ IR
Sbjct: 447 GVWLASGGDDGTVRVWELLTGRQIWSVKLSDEEPVNVIR 485
>sp|P41838|RAE1_SCHPO Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rae1 PE=1 SV=1
Length = 352
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 8 AVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67
A+ +Q P VL DG V SG DK K + + + GQ VA HD ++ +R
Sbjct: 69 ALYEHQGP-----VLSVNWSRDGTKVASGSVDKSAKVFDIQT-GQNQQVAAHDDAVRCVR 122
Query: 68 LL 69
+
Sbjct: 123 FV 124
>sp|P53197|CDH1_YEAST APC/C activator protein CDH1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CDH1 PE=1 SV=1
Length = 566
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLL 48
S VL TL +DG TV SG D+ ++ W L
Sbjct: 515 SFRVLHLTLSNDGTTVVSGAGDETLRYWKLF 545
>sp|Q12417|PRP46_YEAST Pre-mRNA-splicing factor PRP46 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP46 PE=1 SV=1
Length = 451
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 21 VLCSTLKDDGITVFSGGCDKQVKTW 45
VLCST G+ + +G DK +K W
Sbjct: 402 VLCSTFDKTGLRLITGEADKSIKIW 426
>sp|O42478|TLE4_XENLA Transducin-like enhancer protein 4 OS=Xenopus laevis GN=tle4 PE=1
SV=2
Length = 772
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 23 CSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52
C + +DG +++GG D V++W L G Q
Sbjct: 623 CIDISNDGTKLWTGGLDNTVRSWDLREGRQ 652
>sp|Q07141|TLE4_RAT Transducin-like enhancer protein 4 OS=Rattus norvegicus GN=Tle4
PE=2 SV=2
Length = 748
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 23 CSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52
C + +DG +++GG D V++W L G Q
Sbjct: 599 CIDISNDGTKLWTGGLDNTVRSWDLREGRQ 628
>sp|Q04727|TLE4_HUMAN Transducin-like enhancer protein 4 OS=Homo sapiens GN=TLE4 PE=1
SV=3
Length = 773
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 23 CSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52
C + +DG +++GG D V++W L G Q
Sbjct: 624 CIDISNDGTKLWTGGLDNTVRSWDLREGRQ 653
>sp|Q62441|TLE4_MOUSE Transducin-like enhancer protein 4 OS=Mus musculus GN=Tle4 PE=1
SV=4
Length = 773
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 23 CSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52
C + +DG +++GG D V++W L G Q
Sbjct: 624 CIDISNDGTKLWTGGLDNTVRSWDLREGRQ 653
>sp|O15736|TIPD_DICDI Protein tipD OS=Dictyostelium discoideum GN=tipD PE=3 SV=1
Length = 612
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52
E+ C G + +GG DK VK W ++SG Q
Sbjct: 326 EIYCMAFNSIGNLLATGGGDKCVKVWDVISGQQ 358
>sp|Q62440|TLE1_MOUSE Transducin-like enhancer protein 1 OS=Mus musculus GN=Tle1 PE=1
SV=2
Length = 770
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 23 CSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52
C + +DG +++GG D V++W L G Q
Sbjct: 621 CIDISNDGTKLWTGGLDNTVRSWDLREGRQ 650
>sp|Q04724|TLE1_HUMAN Transducin-like enhancer protein 1 OS=Homo sapiens GN=TLE1 PE=1
SV=2
Length = 770
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 23 CSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52
C + +DG +++GG D V++W L G Q
Sbjct: 621 CIDISNDGTKLWTGGLDNTVRSWDLREGRQ 650
>sp|Q9YEW8|THII_AERPE Probable tRNA sulfurtransferase OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=thiI PE=3 SV=2
Length = 396
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 27 KDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHD 60
++ + ++SGG D V W ++ G PV +A +D
Sbjct: 178 EEPSLALYSGGFDSGVAAWMIMRRGSPVHLAFYD 211
>sp|B2AY28|ERB1_PODAN Ribosome biogenesis protein ERB1 OS=Podospora anserina (strain S /
ATCC MYA-4624 / DSM 980 / FGSC 10383) GN=ERB1 PE=3 SV=1
Length = 784
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 30 GITVFSGGCDKQVKTWPLLSGGQPVIVAM-HDAPIKTIR 67
G+ + +GG D V+ W LL+G Q V + + P+ T+R
Sbjct: 449 GVALATGGSDGTVRVWELLTGRQVWSVKLSSEDPVYTVR 487
>sp|Q6BYU4|HIR1_DEBHA Protein HIR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=HIR1 PE=3
SV=2
Length = 985
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTW 45
NK IE ++ DG + SGG D VK W
Sbjct: 15 NKQIECYSVSINSDGSRLASGGLDGNVKIW 44
>sp|Q9YGY3|BUB3_XENLA Mitotic checkpoint protein BUB3 OS=Xenopus laevis GN=bub3 PE=1 SV=1
Length = 330
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 29 DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
D +SGG D Q+K L + G V V HDAPI+ +
Sbjct: 72 DPTHAWSGGLDHQLKMHDLNTDGDTV-VGSHDAPIRCV 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,441,248
Number of Sequences: 539616
Number of extensions: 812368
Number of successful extensions: 3419
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3323
Number of HSP's gapped (non-prelim): 96
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)