Query 035276
Match_columns 69
No_of_seqs 124 out of 1229
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 10:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 99.6 1.6E-14 3.5E-19 88.3 7.2 66 4-69 99-166 (480)
2 KOG0271 Notchless-like WD40 re 99.4 1.1E-12 2.4E-17 80.4 5.1 56 13-68 152-208 (480)
3 KOG0266 WD40 repeat-containing 99.3 6.5E-12 1.4E-16 78.7 7.4 60 10-69 238-297 (456)
4 KOG0272 U4/U6 small nuclear ri 99.3 2.2E-12 4.7E-17 79.4 4.9 56 14-69 341-396 (459)
5 KOG0272 U4/U6 small nuclear ri 99.3 3.1E-12 6.7E-17 78.8 5.2 61 9-69 294-354 (459)
6 KOG0279 G protein beta subunit 99.3 5.7E-12 1.2E-16 74.6 5.9 63 7-69 52-114 (315)
7 KOG0263 Transcription initiati 99.3 7.8E-12 1.7E-16 80.9 5.7 61 9-69 568-628 (707)
8 KOG0647 mRNA export protein (c 99.3 1.9E-11 4.1E-16 73.1 6.8 55 13-68 67-121 (347)
9 KOG0263 Transcription initiati 99.3 1.6E-11 3.5E-16 79.5 6.0 57 13-69 446-502 (707)
10 KOG0291 WD40-repeat-containing 99.2 2.9E-11 6.4E-16 78.8 6.7 56 14-69 346-401 (893)
11 KOG0316 Conserved WD40 repeat- 99.2 1.4E-11 3E-16 72.0 4.6 59 11-69 52-110 (307)
12 KOG1273 WD40 repeat protein [G 99.2 6.2E-11 1.4E-15 71.5 6.4 63 1-68 52-114 (405)
13 KOG0266 WD40 repeat-containing 99.2 1E-10 2.3E-15 73.3 7.2 58 12-69 197-255 (456)
14 PF00400 WD40: WD domain, G-be 99.2 7.3E-11 1.6E-15 50.9 4.2 35 12-46 5-39 (39)
15 KOG0279 G protein beta subunit 99.2 9E-11 1.9E-15 69.6 5.6 62 7-69 94-157 (315)
16 KOG0286 G-protein beta subunit 99.2 1.1E-10 2.3E-15 69.7 5.9 62 7-68 175-237 (343)
17 PTZ00421 coronin; Provisional 99.1 4.2E-10 9.1E-15 71.4 8.1 56 14-69 71-134 (493)
18 KOG0285 Pleiotropic regulator 99.1 2.5E-10 5.4E-15 69.8 5.7 60 10-69 143-202 (460)
19 KOG0315 G-protein beta subunit 99.1 4.5E-10 9.7E-15 66.1 6.5 61 9-69 206-267 (311)
20 PTZ00421 coronin; Provisional 99.1 7.3E-10 1.6E-14 70.3 7.5 58 12-69 119-177 (493)
21 KOG0319 WD40-repeat-containing 99.1 3.6E-10 7.9E-15 73.4 6.1 56 13-68 500-555 (775)
22 KOG0315 G-protein beta subunit 99.1 4.4E-10 9.5E-15 66.1 5.6 57 12-68 252-308 (311)
23 KOG0295 WD40 repeat-containing 99.1 4.7E-10 1E-14 68.5 5.8 56 13-68 329-384 (406)
24 KOG0275 Conserved WD40 repeat- 99.1 6.5E-11 1.4E-15 72.0 2.1 53 17-69 262-315 (508)
25 KOG0647 mRNA export protein (c 99.1 5.1E-10 1.1E-14 67.1 5.5 69 1-69 1-81 (347)
26 KOG0265 U5 snRNP-specific prot 99.0 7.4E-10 1.6E-14 66.3 5.4 53 14-66 86-138 (338)
27 PTZ00420 coronin; Provisional 99.0 3.2E-09 6.8E-14 68.4 7.9 57 13-69 69-134 (568)
28 KOG0264 Nucleosome remodeling 99.0 2.4E-09 5.1E-14 66.3 7.0 60 10-69 264-325 (422)
29 KOG0277 Peroxisomal targeting 99.0 1.1E-09 2.4E-14 64.6 5.3 65 4-69 177-243 (311)
30 KOG2394 WD40 protein DMR-N9 [G 99.0 1.4E-09 3.1E-14 69.1 5.8 52 17-68 331-382 (636)
31 KOG0269 WD40 repeat-containing 99.0 2.2E-09 4.7E-14 70.3 6.2 59 10-68 212-271 (839)
32 KOG0281 Beta-TrCP (transducin 99.0 1.3E-09 2.9E-14 66.8 4.8 57 11-69 230-286 (499)
33 KOG0645 WD40 repeat protein [G 98.9 5.3E-09 1.1E-13 62.1 6.4 56 14-69 57-114 (312)
34 KOG0302 Ribosome Assembly prot 98.9 2E-09 4.2E-14 66.2 4.6 65 5-69 244-311 (440)
35 KOG0286 G-protein beta subunit 98.9 9.9E-09 2.2E-13 61.5 7.1 59 11-69 48-106 (343)
36 cd00200 WD40 WD40 domain, foun 98.9 1.3E-08 2.9E-13 57.5 7.4 57 13-69 4-60 (289)
37 KOG0643 Translation initiation 98.9 7.7E-09 1.7E-13 61.5 6.5 58 11-69 45-102 (327)
38 KOG0283 WD40 repeat-containing 98.9 3.8E-09 8.2E-14 69.0 5.1 56 12-69 363-418 (712)
39 KOG1539 WD repeat protein [Gen 98.9 7.1E-09 1.5E-13 68.4 6.3 58 11-69 569-626 (910)
40 KOG1407 WD40 repeat protein [F 98.9 4.9E-09 1.1E-13 62.1 5.0 59 11-69 182-240 (313)
41 KOG0319 WD40-repeat-containing 98.9 5.2E-09 1.1E-13 68.2 5.4 57 11-67 540-596 (775)
42 KOG0284 Polyadenylation factor 98.9 3.9E-09 8.4E-14 65.3 4.5 58 12-69 216-273 (464)
43 KOG0265 U5 snRNP-specific prot 98.9 1.5E-08 3.3E-13 60.8 6.8 60 9-69 38-99 (338)
44 KOG0299 U3 snoRNP-associated p 98.9 8.5E-09 1.8E-13 64.4 5.8 54 15-68 199-252 (479)
45 KOG0291 WD40-repeat-containing 98.9 8.3E-09 1.8E-13 67.7 5.9 58 10-68 470-528 (893)
46 KOG0318 WD40 repeat stress pro 98.9 1.6E-08 3.5E-13 64.2 6.9 65 5-69 177-244 (603)
47 KOG0645 WD40 repeat protein [G 98.9 1.7E-08 3.8E-13 59.9 6.7 58 12-69 99-159 (312)
48 KOG0273 Beta-transducin family 98.9 1.1E-08 2.5E-13 64.2 6.1 58 11-69 445-502 (524)
49 KOG0292 Vesicle coat complex C 98.9 5E-09 1.1E-13 69.9 4.8 59 11-69 44-102 (1202)
50 KOG0650 WD40 repeat nucleolar 98.8 1.4E-08 3.1E-13 65.4 6.3 54 15-69 397-450 (733)
51 KOG0276 Vesicle coat complex C 98.8 1.3E-08 2.9E-13 65.8 6.1 56 13-68 135-191 (794)
52 KOG0273 Beta-transducin family 98.8 1.3E-08 2.7E-13 64.0 5.8 58 12-69 353-410 (524)
53 KOG0313 Microtubule binding pr 98.8 9.2E-09 2E-13 63.2 5.0 64 6-69 333-398 (423)
54 KOG0282 mRNA splicing factor [ 98.8 2.7E-09 5.9E-14 66.8 2.7 57 11-68 251-307 (503)
55 KOG0289 mRNA splicing factor [ 98.8 1.5E-08 3.3E-13 63.2 5.7 51 19-69 348-398 (506)
56 KOG0281 Beta-TrCP (transducin 98.8 1.5E-09 3.2E-14 66.6 1.2 60 8-69 350-409 (499)
57 KOG0270 WD40 repeat-containing 98.8 3.1E-09 6.8E-14 66.0 2.6 55 15-69 240-295 (463)
58 KOG0288 WD40 repeat protein Ti 98.8 1.9E-08 4.2E-13 62.3 6.0 49 21-69 390-440 (459)
59 KOG0296 Angio-associated migra 98.8 2.1E-08 4.6E-13 61.3 5.8 62 7-69 316-377 (399)
60 KOG0285 Pleiotropic regulator 98.8 2.1E-08 4.6E-13 61.6 5.7 60 9-68 226-285 (460)
61 PTZ00420 coronin; Provisional 98.8 5.9E-08 1.3E-12 62.7 7.8 56 13-69 120-176 (568)
62 KOG1446 Histone H3 (Lys4) meth 98.8 3.1E-08 6.8E-13 59.4 6.1 49 21-69 235-284 (311)
63 KOG0318 WD40 repeat stress pro 98.8 3.3E-08 7.2E-13 62.8 6.4 57 13-69 482-539 (603)
64 KOG0316 Conserved WD40 repeat- 98.8 3.7E-08 8.1E-13 57.9 6.1 57 11-67 10-66 (307)
65 KOG0277 Peroxisomal targeting 98.8 2E-08 4.3E-13 59.4 4.8 62 8-69 94-156 (311)
66 KOG1007 WD repeat protein TSSC 98.8 2.4E-08 5.1E-13 60.0 5.1 55 15-69 211-267 (370)
67 KOG0282 mRNA splicing factor [ 98.8 2.3E-09 5E-14 67.2 0.9 58 12-69 208-267 (503)
68 KOG0306 WD40-repeat-containing 98.8 2E-08 4.2E-13 66.0 5.1 57 12-68 544-600 (888)
69 KOG0283 WD40 repeat-containing 98.7 1.2E-08 2.5E-13 66.8 3.9 34 16-49 265-298 (712)
70 KOG0284 Polyadenylation factor 98.7 1.4E-08 3E-13 63.0 3.9 53 17-69 179-231 (464)
71 KOG0296 Angio-associated migra 98.7 7.6E-08 1.6E-12 59.0 6.8 59 11-69 57-115 (399)
72 KOG1273 WD40 repeat protein [G 98.7 2.7E-08 5.9E-13 60.3 4.6 49 21-69 26-74 (405)
73 KOG0305 Anaphase promoting com 98.7 4.3E-08 9.4E-13 62.1 5.5 56 14-69 297-352 (484)
74 KOG0310 Conserved WD40 repeat- 98.7 4.5E-08 9.7E-13 61.5 5.4 61 9-69 101-162 (487)
75 KOG0278 Serine/threonine kinas 98.7 4.3E-08 9.2E-13 58.1 5.0 39 14-52 263-301 (334)
76 KOG0303 Actin-binding protein 98.7 5E-08 1.1E-12 60.5 5.4 60 10-69 73-140 (472)
77 cd00200 WD40 WD40 domain, foun 98.7 2.4E-07 5.1E-12 52.4 7.5 57 13-69 46-102 (289)
78 KOG0293 WD40 repeat-containing 98.7 3.7E-08 8.1E-13 61.4 4.4 57 12-68 263-320 (519)
79 KOG0308 Conserved WD40 repeat- 98.7 1E-07 2.2E-12 61.9 6.5 54 14-67 209-262 (735)
80 KOG0295 WD40 repeat-containing 98.7 7E-08 1.5E-12 59.2 5.5 58 10-67 185-242 (406)
81 KOG0973 Histone transcription 98.6 6.2E-08 1.3E-12 64.9 4.8 55 14-68 125-179 (942)
82 PLN00181 protein SPA1-RELATED; 98.6 2.5E-07 5.5E-12 61.3 7.6 56 12-68 569-625 (793)
83 KOG0641 WD40 repeat protein [G 98.6 2.4E-07 5.2E-12 54.5 6.5 61 8-68 79-144 (350)
84 KOG0274 Cdc4 and related F-box 98.6 2.5E-07 5.5E-12 59.5 7.2 55 13-67 244-298 (537)
85 KOG0274 Cdc4 and related F-box 98.6 1.6E-07 3.6E-12 60.3 6.3 55 12-68 325-379 (537)
86 KOG2096 WD40 repeat protein [G 98.6 7.4E-08 1.6E-12 58.6 4.3 39 11-49 79-117 (420)
87 KOG0292 Vesicle coat complex C 98.6 1.7E-07 3.7E-12 62.9 6.2 57 13-69 88-144 (1202)
88 KOG0302 Ribosome Assembly prot 98.6 2.7E-07 5.8E-12 57.0 6.2 55 15-69 299-356 (440)
89 KOG0305 Anaphase promoting com 98.6 2.7E-07 5.8E-12 58.7 6.3 52 18-69 217-269 (484)
90 KOG0276 Vesicle coat complex C 98.6 6.6E-08 1.4E-12 62.7 3.4 55 14-68 179-235 (794)
91 KOG1524 WD40 repeat-containing 98.6 1.2E-07 2.6E-12 60.8 4.3 60 9-69 177-236 (737)
92 KOG0772 Uncharacterized conser 98.5 1.5E-07 3.2E-12 60.1 4.6 53 17-69 316-373 (641)
93 KOG1036 Mitotic spindle checkp 98.5 3.9E-07 8.4E-12 54.9 6.2 58 10-69 46-103 (323)
94 PLN00181 protein SPA1-RELATED; 98.5 5.1E-07 1.1E-11 59.9 7.2 52 18-69 532-584 (793)
95 KOG4283 Transcription-coupled 98.5 5E-07 1.1E-11 54.7 6.3 48 12-59 182-231 (397)
96 KOG0293 WD40 repeat-containing 98.5 5.3E-07 1.1E-11 56.4 6.2 56 14-69 220-278 (519)
97 KOG1310 WD40 repeat protein [G 98.5 3.6E-07 7.7E-12 58.9 5.3 55 14-68 46-101 (758)
98 KOG0267 Microtubule severing p 98.5 6E-08 1.3E-12 63.5 1.9 56 14-69 66-121 (825)
99 KOG0973 Histone transcription 98.5 5.1E-07 1.1E-11 60.7 6.1 57 13-69 64-138 (942)
100 KOG1009 Chromatin assembly com 98.5 1.5E-07 3.2E-12 58.4 3.3 58 11-68 116-173 (434)
101 KOG0294 WD40 repeat-containing 98.5 6.5E-07 1.4E-11 54.3 5.9 55 13-69 38-92 (362)
102 KOG0288 WD40 repeat protein Ti 98.5 2.5E-07 5.4E-12 57.5 4.0 63 6-68 207-269 (459)
103 KOG0275 Conserved WD40 repeat- 98.5 1.3E-07 2.8E-12 57.9 2.7 54 16-69 304-357 (508)
104 KOG1036 Mitotic spindle checkp 98.5 3.1E-07 6.8E-12 55.3 4.2 52 18-69 232-283 (323)
105 KOG0268 Sof1-like rRNA process 98.5 1.3E-07 2.8E-12 58.2 2.5 57 12-68 60-117 (433)
106 KOG0310 Conserved WD40 repeat- 98.5 7.6E-07 1.7E-11 56.1 5.9 60 7-68 143-204 (487)
107 KOG0641 WD40 repeat protein [G 98.4 1.6E-06 3.5E-11 51.1 6.7 51 19-69 232-282 (350)
108 KOG0646 WD40 repeat protein [G 98.4 2.7E-07 5.9E-12 57.9 3.7 58 11-68 268-327 (476)
109 KOG2111 Uncharacterized conser 98.4 1.6E-06 3.4E-11 52.6 6.7 58 12-69 175-235 (346)
110 KOG0643 Translation initiation 98.4 1.6E-06 3.4E-11 51.9 6.6 56 13-68 5-60 (327)
111 KOG1446 Histone H3 (Lys4) meth 98.4 2.2E-06 4.7E-11 51.7 7.2 52 17-68 13-64 (311)
112 KOG0289 mRNA splicing factor [ 98.4 1.3E-06 2.9E-11 54.8 6.4 58 11-68 382-440 (506)
113 KOG2445 Nuclear pore complex c 98.4 1.7E-06 3.8E-11 52.4 6.7 56 13-68 8-67 (361)
114 KOG1034 Transcriptional repres 98.4 7.9E-07 1.7E-11 54.2 5.2 58 12-69 129-190 (385)
115 KOG0267 Microtubule severing p 98.4 4.3E-07 9.3E-12 59.7 4.3 53 16-68 152-204 (825)
116 KOG0974 WD-repeat protein WDR6 98.4 1.4E-06 3.1E-11 58.7 6.5 56 13-68 170-226 (967)
117 KOG0313 Microtubule binding pr 98.4 1.3E-06 2.7E-11 54.1 5.8 57 9-67 251-307 (423)
118 KOG1407 WD40 repeat protein [F 98.4 1.7E-06 3.6E-11 51.6 6.0 58 11-69 224-281 (313)
119 KOG1332 Vesicle coat complex C 98.4 9.6E-07 2.1E-11 52.2 4.9 57 12-68 50-110 (299)
120 KOG0300 WD40 repeat-containing 98.4 9.8E-07 2.1E-11 54.0 5.0 59 11-69 141-199 (481)
121 smart00320 WD40 WD40 repeats. 98.4 1.6E-06 3.4E-11 35.1 4.2 32 15-46 9-40 (40)
122 KOG1408 WD40 repeat protein [F 98.4 1E-06 2.3E-11 58.3 5.2 53 17-69 77-131 (1080)
123 KOG1272 WD40-repeat-containing 98.4 6.7E-07 1.5E-11 56.5 4.0 46 11-56 286-331 (545)
124 KOG1538 Uncharacterized conser 98.3 1.4E-06 3.1E-11 57.5 5.4 57 11-69 46-102 (1081)
125 KOG0264 Nucleosome remodeling 98.3 9.3E-07 2E-11 55.1 4.4 60 10-69 219-281 (422)
126 KOG1332 Vesicle coat complex C 98.3 5.9E-07 1.3E-11 53.1 3.1 56 13-68 6-64 (299)
127 KOG0307 Vesicle coat complex C 98.3 9.8E-07 2.1E-11 59.8 4.3 66 4-69 239-305 (1049)
128 KOG0642 Cell-cycle nuclear pro 98.3 2.8E-06 6.1E-11 54.5 6.0 55 15-69 341-405 (577)
129 KOG1274 WD40 repeat protein [G 98.3 2.5E-06 5.5E-11 57.1 5.9 44 13-56 133-176 (933)
130 KOG0322 G-protein beta subunit 98.3 1.7E-06 3.8E-11 51.6 4.6 50 20-69 253-302 (323)
131 KOG1063 RNA polymerase II elon 98.3 2.3E-06 5.1E-11 56.1 5.4 57 13-69 567-627 (764)
132 KOG0300 WD40 repeat-containing 98.3 6.6E-07 1.4E-11 54.7 2.7 56 9-64 263-318 (481)
133 KOG2110 Uncharacterized conser 98.3 4.9E-06 1.1E-10 51.3 6.4 57 13-69 168-227 (391)
134 KOG0269 WD40 repeat-containing 98.3 1.6E-06 3.5E-11 57.3 4.5 55 15-69 130-185 (839)
135 KOG0294 WD40 repeat-containing 98.3 3.7E-06 7.9E-11 51.1 5.6 58 11-68 76-135 (362)
136 KOG0303 Actin-binding protein 98.3 1.4E-06 3E-11 54.3 3.7 57 12-69 125-182 (472)
137 TIGR03866 PQQ_ABC_repeats PQQ- 98.2 7E-06 1.5E-10 47.7 6.5 51 18-69 248-299 (300)
138 PF08662 eIF2A: Eukaryotic tra 98.2 1E-05 2.2E-10 46.1 6.7 50 18-69 100-152 (194)
139 KOG0771 Prolactin regulatory e 98.2 1.9E-06 4E-11 53.5 3.8 48 22-69 148-195 (398)
140 KOG0278 Serine/threonine kinas 98.2 3.9E-06 8.5E-11 50.0 4.9 51 19-69 225-276 (334)
141 KOG0640 mRNA cleavage stimulat 98.2 3.5E-06 7.5E-11 51.5 4.8 57 13-69 107-181 (430)
142 KOG1445 Tumor-specific antigen 98.2 9.3E-07 2E-11 58.0 2.3 57 13-69 672-729 (1012)
143 KOG0306 WD40-repeat-containing 98.2 4.2E-06 9.2E-11 55.4 5.3 57 12-68 586-642 (888)
144 KOG2048 WD40 repeat protein [G 98.2 6E-06 1.3E-10 53.9 5.6 40 15-54 151-190 (691)
145 KOG0307 Vesicle coat complex C 98.2 4.8E-06 1E-10 56.7 5.0 61 9-69 107-170 (1049)
146 KOG0644 Uncharacterized conser 98.1 1.9E-06 4.1E-11 57.8 2.9 61 8-68 180-240 (1113)
147 KOG1538 Uncharacterized conser 98.1 8.6E-06 1.9E-10 53.9 5.6 49 20-69 14-62 (1081)
148 KOG0301 Phospholipase A2-activ 98.1 1.2E-05 2.5E-10 52.9 6.0 55 11-67 172-226 (745)
149 KOG0268 Sof1-like rRNA process 98.1 3.8E-06 8.3E-11 51.9 3.6 55 15-69 269-324 (433)
150 KOG1408 WD40 repeat protein [F 98.1 1.2E-05 2.5E-10 53.6 6.0 57 13-69 636-692 (1080)
151 KOG0649 WD40 repeat protein [G 98.1 8E-06 1.7E-10 48.5 4.4 47 10-56 148-194 (325)
152 KOG1963 WD40 repeat protein [G 98.1 8.8E-06 1.9E-10 54.1 5.1 58 11-69 244-301 (792)
153 COG2319 FOG: WD40 repeat [Gene 98.1 4.1E-05 8.9E-10 44.9 7.5 58 12-69 149-207 (466)
154 KOG0639 Transducin-like enhanc 98.1 2.1E-06 4.6E-11 55.0 2.0 43 11-53 544-586 (705)
155 KOG2096 WD40 repeat protein [G 98.1 6.7E-06 1.4E-10 50.4 3.9 36 13-48 273-308 (420)
156 KOG4547 WD40 repeat-containing 98.0 2.3E-05 5.1E-10 50.4 6.3 50 17-68 143-192 (541)
157 KOG0290 Conserved WD40 repeat- 98.0 2E-05 4.3E-10 47.8 5.6 63 7-69 139-205 (364)
158 KOG0639 Transducin-like enhanc 98.0 9.9E-06 2.2E-10 52.1 4.2 49 21-69 512-560 (705)
159 KOG1524 WD40 repeat-containing 98.0 3.5E-06 7.5E-11 54.4 2.1 57 11-68 97-153 (737)
160 KOG1445 Tumor-specific antigen 98.0 1.3E-05 2.9E-10 52.8 4.7 45 8-52 710-754 (1012)
161 KOG2394 WD40 protein DMR-N9 [G 98.0 6.9E-06 1.5E-10 52.9 3.3 53 17-69 289-341 (636)
162 KOG0644 Uncharacterized conser 98.0 2.3E-06 5E-11 57.4 1.2 60 10-69 224-283 (1113)
163 KOG0646 WD40 repeat protein [G 98.0 1.4E-05 3E-10 50.4 4.4 53 17-69 80-132 (476)
164 KOG0771 Prolactin regulatory e 98.0 9.1E-06 2E-10 50.5 3.4 46 8-54 176-221 (398)
165 KOG1009 Chromatin assembly com 98.0 1.6E-05 3.4E-10 49.7 4.4 58 12-69 59-132 (434)
166 KOG0640 mRNA cleavage stimulat 98.0 1.9E-05 4.1E-10 48.4 4.6 58 11-68 254-313 (430)
167 KOG0308 Conserved WD40 repeat- 98.0 4.3E-05 9.2E-10 50.2 6.4 53 16-68 169-221 (735)
168 KOG0290 Conserved WD40 repeat- 98.0 3.8E-05 8.2E-10 46.6 5.7 59 11-69 189-251 (364)
169 KOG0649 WD40 repeat protein [G 97.9 3.3E-05 7.2E-10 46.0 5.2 48 20-67 116-163 (325)
170 KOG0321 WD40 repeat-containing 97.9 1.5E-05 3.3E-10 52.1 3.9 57 12-68 94-152 (720)
171 KOG1063 RNA polymerase II elon 97.9 3.2E-05 7E-10 51.0 5.4 56 14-69 521-581 (764)
172 KOG1034 Transcriptional repres 97.9 2.3E-05 5.1E-10 48.0 4.5 38 12-49 175-212 (385)
173 PF08662 eIF2A: Eukaryotic tra 97.9 9.1E-05 2E-09 42.2 6.6 50 17-69 58-109 (194)
174 KOG4378 Nuclear protein COP1 [ 97.9 6E-05 1.3E-09 48.5 6.3 52 17-68 249-301 (673)
175 KOG2139 WD40 repeat protein [G 97.9 8.7E-05 1.9E-09 46.2 6.6 56 13-69 191-247 (445)
176 KOG0301 Phospholipase A2-activ 97.9 2.6E-05 5.6E-10 51.3 4.2 52 14-68 136-187 (745)
177 KOG0299 U3 snoRNP-associated p 97.8 2E-05 4.3E-10 49.7 3.2 55 12-66 238-292 (479)
178 KOG2445 Nuclear pore complex c 97.8 7.1E-05 1.5E-09 45.6 5.4 57 12-69 217-297 (361)
179 KOG0772 Uncharacterized conser 97.8 5.6E-05 1.2E-09 48.7 5.0 58 12-69 262-326 (641)
180 KOG1274 WD40 repeat protein [G 97.8 0.00011 2.5E-09 49.6 6.1 57 13-69 91-147 (933)
181 PF12894 Apc4_WD40: Anaphase-p 97.6 0.00062 1.3E-08 30.6 5.7 35 17-52 10-44 (47)
182 KOG4328 WD40 protein [Function 97.6 0.00013 2.8E-09 46.3 4.4 54 16-69 320-378 (498)
183 KOG4283 Transcription-coupled 97.6 0.00016 3.5E-09 44.1 4.5 43 10-52 93-136 (397)
184 KOG4640 Anaphase-promoting com 97.6 0.00033 7.1E-09 46.0 5.8 52 17-68 60-113 (665)
185 KOG2079 Vacuolar assembly/sort 97.5 0.00049 1.1E-08 47.6 5.9 53 14-66 126-178 (1206)
186 KOG1188 WD40 repeat protein [G 97.5 0.00041 9E-09 42.8 5.1 55 14-68 161-219 (376)
187 KOG2919 Guanine nucleotide-bin 97.4 0.00056 1.2E-08 42.2 5.4 45 24-68 303-348 (406)
188 PRK05137 tolB translocation pr 97.4 0.00083 1.8E-08 42.2 6.4 55 13-68 196-253 (435)
189 KOG0322 G-protein beta subunit 97.4 0.00014 3E-09 43.7 2.7 33 16-48 291-323 (323)
190 KOG0270 WD40 repeat-containing 97.4 0.00077 1.7E-08 42.7 5.9 56 13-68 281-337 (463)
191 KOG1523 Actin-related protein 97.4 0.00058 1.2E-08 41.9 5.1 58 12-69 49-109 (361)
192 TIGR03866 PQQ_ABC_repeats PQQ- 97.4 0.0012 2.7E-08 38.3 6.3 39 21-59 33-72 (300)
193 PF02239 Cytochrom_D1: Cytochr 97.4 0.0012 2.5E-08 41.1 6.3 37 22-58 40-76 (369)
194 KOG2919 Guanine nucleotide-bin 97.4 0.00039 8.4E-09 42.9 4.0 49 13-61 245-295 (406)
195 KOG3914 WD repeat protein WDR4 97.4 0.00033 7.2E-09 43.7 3.8 50 6-56 182-231 (390)
196 KOG4328 WD40 protein [Function 97.3 0.0013 2.8E-08 41.9 6.3 54 16-69 184-243 (498)
197 KOG4227 WD40 repeat protein [G 97.3 0.00067 1.5E-08 43.0 4.9 57 13-69 51-114 (609)
198 PRK01742 tolB translocation pr 97.3 0.001 2.2E-08 41.8 5.6 38 14-51 199-239 (429)
199 PRK01742 tolB translocation pr 97.3 0.00044 9.5E-09 43.4 3.8 48 22-69 375-424 (429)
200 KOG1587 Cytoplasmic dynein int 97.3 0.00071 1.5E-08 44.2 4.8 58 12-69 392-450 (555)
201 KOG4378 Nuclear protein COP1 [ 97.3 7.7E-05 1.7E-09 48.0 0.4 47 23-69 84-130 (673)
202 COG2319 FOG: WD40 repeat [Gene 97.2 0.0046 9.9E-08 36.2 7.7 54 15-68 281-336 (466)
203 KOG0280 Uncharacterized conser 97.2 0.0018 3.9E-08 39.5 5.6 54 14-68 206-261 (339)
204 PF11768 DUF3312: Protein of u 97.2 0.002 4.4E-08 41.9 6.1 34 17-50 258-291 (545)
205 KOG1587 Cytoplasmic dynein int 97.2 0.0026 5.5E-08 41.7 6.6 51 18-68 242-299 (555)
206 KOG0280 Uncharacterized conser 97.2 0.0019 4.2E-08 39.4 5.4 55 13-67 160-217 (339)
207 KOG1645 RING-finger-containing 97.1 0.00063 1.4E-08 42.9 3.2 55 13-68 188-243 (463)
208 PRK02889 tolB translocation pr 97.1 0.0032 7E-08 39.6 6.3 39 14-52 191-232 (427)
209 KOG2106 Uncharacterized conser 97.1 0.0054 1.2E-07 39.9 7.1 52 18-69 447-500 (626)
210 KOG2048 WD40 repeat protein [G 97.1 0.0044 9.6E-08 41.1 6.7 51 17-68 68-118 (691)
211 KOG1409 Uncharacterized conser 97.0 0.0016 3.5E-08 40.4 4.4 56 11-66 190-246 (404)
212 KOG2055 WD40 repeat protein [G 97.0 0.0023 5E-08 40.9 5.2 39 18-56 344-382 (514)
213 KOG1334 WD40 repeat protein [G 97.0 0.00075 1.6E-08 43.4 2.9 51 13-63 137-188 (559)
214 TIGR02800 propeller_TolB tol-p 97.0 0.0035 7.6E-08 38.7 5.8 38 15-52 186-226 (417)
215 KOG2055 WD40 repeat protein [G 97.0 0.0057 1.2E-07 39.2 6.5 53 16-68 211-265 (514)
216 KOG1007 WD repeat protein TSSC 96.9 0.0067 1.5E-07 37.2 6.1 61 9-69 249-339 (370)
217 KOG3914 WD repeat protein WDR4 96.9 0.0022 4.7E-08 40.2 4.1 55 13-67 146-201 (390)
218 PF15492 Nbas_N: Neuroblastoma 96.8 0.0048 1E-07 37.3 5.2 40 17-56 228-267 (282)
219 PRK04922 tolB translocation pr 96.8 0.0041 8.9E-08 39.1 5.0 39 14-52 199-240 (433)
220 KOG4532 WD40-like repeat conta 96.8 0.007 1.5E-07 36.8 5.6 49 21-69 206-259 (344)
221 PF15492 Nbas_N: Neuroblastoma 96.8 0.011 2.4E-07 35.8 6.4 34 22-56 47-80 (282)
222 KOG2106 Uncharacterized conser 96.8 0.0052 1.1E-07 40.0 5.3 59 11-69 97-163 (626)
223 KOG0642 Cell-cycle nuclear pro 96.8 0.0034 7.4E-08 40.9 4.4 43 8-50 386-428 (577)
224 KOG1523 Actin-related protein 96.7 0.0096 2.1E-07 36.8 5.9 53 17-69 9-64 (361)
225 KOG2110 Uncharacterized conser 96.6 0.021 4.5E-07 35.8 6.7 54 16-69 127-182 (391)
226 KOG1240 Protein kinase contain 96.6 0.0029 6.3E-08 44.6 3.3 39 11-49 1041-1080(1431)
227 KOG1188 WD40 repeat protein [G 96.5 0.01 2.2E-07 36.9 5.3 39 14-52 66-106 (376)
228 KOG3881 Uncharacterized conser 96.5 0.0077 1.7E-07 37.9 4.6 40 14-53 286-325 (412)
229 PRK03629 tolB translocation pr 96.5 0.0075 1.6E-07 38.1 4.6 47 22-69 377-426 (429)
230 PF07676 PD40: WD40-like Beta 96.5 0.017 3.8E-07 24.3 4.9 32 14-45 4-38 (39)
231 PRK00178 tolB translocation pr 96.5 0.018 4E-07 36.0 6.3 39 14-52 194-235 (430)
232 KOG2111 Uncharacterized conser 96.4 0.0084 1.8E-07 36.9 4.4 32 18-49 226-257 (346)
233 TIGR02276 beta_rpt_yvtn 40-res 96.4 0.02 4.4E-07 24.2 5.1 40 28-68 1-41 (42)
234 PRK03629 tolB translocation pr 96.4 0.022 4.7E-07 36.0 6.3 37 15-51 195-234 (429)
235 KOG0974 WD-repeat protein WDR6 96.2 0.015 3.3E-07 40.2 5.1 52 13-67 213-265 (967)
236 KOG1539 WD repeat protein [Gen 96.2 0.017 3.8E-07 39.4 5.3 48 17-64 242-292 (910)
237 PF11715 Nup160: Nucleoporin N 96.1 0.029 6.4E-07 36.3 6.0 37 19-55 215-255 (547)
238 PRK05137 tolB translocation pr 96.1 0.026 5.7E-07 35.5 5.6 52 16-68 243-297 (435)
239 KOG4497 Uncharacterized conser 96.1 0.036 7.8E-07 34.7 6.0 36 17-52 90-126 (447)
240 KOG2321 WD40 repeat protein [G 96.1 0.038 8.3E-07 36.7 6.3 49 19-68 229-279 (703)
241 KOG1310 WD40 repeat protein [G 96.1 0.0088 1.9E-07 39.4 3.5 36 14-49 89-126 (758)
242 KOG0321 WD40 repeat-containing 96.1 0.021 4.7E-07 38.0 5.2 45 25-69 324-369 (720)
243 KOG0650 WD40 repeat nucleolar 96.1 0.0086 1.9E-07 39.7 3.3 37 9-45 692-732 (733)
244 KOG1832 HIV-1 Vpr-binding prot 95.9 0.024 5.2E-07 39.6 5.0 51 16-66 1099-1149(1516)
245 KOG2695 WD40 repeat protein [G 95.9 0.0078 1.7E-07 37.6 2.5 44 17-60 297-344 (425)
246 PRK01029 tolB translocation pr 95.9 0.053 1.1E-06 34.4 6.1 35 18-52 326-363 (428)
247 KOG4190 Uncharacterized conser 95.8 0.0053 1.1E-07 40.7 1.6 54 15-68 732-792 (1034)
248 PF10313 DUF2415: Uncharacteri 95.8 0.057 1.2E-06 23.9 5.0 31 19-49 1-34 (43)
249 KOG2041 WD40 repeat protein [G 95.8 0.055 1.2E-06 37.1 6.1 51 19-69 15-80 (1189)
250 PRK04792 tolB translocation pr 95.7 0.046 9.9E-07 34.8 5.4 37 16-52 215-254 (448)
251 KOG1963 WD40 repeat protein [G 95.6 0.062 1.3E-06 36.7 5.9 54 16-69 203-260 (792)
252 KOG1064 RAVE (regulator of V-A 95.6 0.0088 1.9E-07 44.0 2.1 38 15-52 2333-2370(2439)
253 PRK04922 tolB translocation pr 95.5 0.077 1.7E-06 33.5 5.9 47 21-68 250-299 (433)
254 PF11768 DUF3312: Protein of u 95.5 0.077 1.7E-06 34.9 5.9 32 18-49 299-330 (545)
255 PRK11028 6-phosphogluconolacto 95.4 0.081 1.8E-06 31.9 5.5 29 22-50 231-260 (330)
256 PRK02889 tolB translocation pr 95.3 0.061 1.3E-06 33.9 5.0 49 20-68 241-291 (427)
257 KOG1334 WD40 repeat protein [G 95.3 0.012 2.6E-07 38.1 1.8 47 20-66 395-442 (559)
258 KOG4714 Nucleoporin [Nuclear s 95.3 0.013 2.7E-07 35.6 1.8 49 21-69 182-232 (319)
259 TIGR02658 TTQ_MADH_Hv methylam 95.2 0.11 2.4E-06 32.5 5.7 39 18-56 298-338 (352)
260 PRK00178 tolB translocation pr 95.1 0.14 3E-06 32.2 6.0 38 21-59 245-285 (430)
261 KOG4227 WD40 repeat protein [G 95.1 0.11 2.4E-06 33.4 5.5 41 16-56 103-143 (609)
262 KOG2321 WD40 repeat protein [G 95.1 0.097 2.1E-06 34.9 5.4 36 17-52 174-209 (703)
263 KOG2139 WD40 repeat protein [G 94.8 0.22 4.7E-06 31.7 6.1 31 17-47 237-267 (445)
264 KOG4547 WD40 repeat-containing 94.8 0.14 3.1E-06 33.6 5.5 51 15-65 99-149 (541)
265 KOG3881 Uncharacterized conser 94.7 0.089 1.9E-06 33.3 4.4 49 18-66 247-296 (412)
266 TIGR02800 propeller_TolB tol-p 94.7 0.2 4.4E-06 31.0 6.0 35 17-51 232-269 (417)
267 KOG4714 Nucleoporin [Nuclear s 94.7 0.028 6.2E-07 34.1 2.1 37 13-49 218-255 (319)
268 PRK04792 tolB translocation pr 94.3 0.25 5.4E-06 31.5 5.8 46 22-68 265-313 (448)
269 PRK11028 6-phosphogluconolacto 94.2 0.11 2.3E-06 31.4 3.9 29 21-49 177-206 (330)
270 KOG1354 Serine/threonine prote 94.1 0.11 2.5E-06 32.7 3.8 40 19-59 273-313 (433)
271 KOG2066 Vacuolar assembly/sort 94.0 0.42 9.1E-06 33.0 6.6 39 29-68 82-120 (846)
272 PF07433 DUF1513: Protein of u 94.0 0.14 3.1E-06 31.5 4.1 37 24-60 56-98 (305)
273 KOG4499 Ca2+-binding protein R 93.9 0.39 8.5E-06 29.1 5.7 45 24-68 217-261 (310)
274 PF02239 Cytochrom_D1: Cytochr 93.9 0.18 4E-06 31.5 4.5 38 20-57 317-356 (369)
275 COG5170 CDC55 Serine/threonine 93.7 0.092 2E-06 32.8 2.9 41 18-59 280-321 (460)
276 COG4946 Uncharacterized protei 93.6 0.67 1.5E-05 30.6 6.8 53 16-68 399-451 (668)
277 PF10282 Lactonase: Lactonase, 93.5 0.55 1.2E-05 28.9 6.1 49 19-68 292-345 (345)
278 KOG3621 WD40 repeat-containing 93.3 0.2 4.3E-06 34.0 4.1 34 16-49 122-155 (726)
279 TIGR02658 TTQ_MADH_Hv methylam 93.1 0.26 5.6E-06 30.9 4.3 32 26-57 53-94 (352)
280 KOG2315 Predicted translation 93.0 0.45 9.7E-06 31.5 5.3 39 18-56 311-352 (566)
281 PRK01029 tolB translocation pr 92.7 0.8 1.7E-05 29.2 6.1 49 20-69 372-423 (428)
282 KOG2314 Translation initiation 92.6 0.41 8.9E-06 32.0 4.7 37 21-57 252-299 (698)
283 KOG2315 Predicted translation 92.4 0.27 5.7E-06 32.5 3.7 29 23-52 359-393 (566)
284 smart00564 PQQ beta-propeller 92.3 0.37 7.9E-06 19.1 3.6 24 31-54 7-30 (33)
285 KOG0309 Conserved WD40 repeat- 92.0 0.32 7E-06 33.7 3.9 56 14-69 110-167 (1081)
286 KOG3617 WD40 and TPR repeat-co 91.9 0.44 9.4E-06 33.7 4.4 36 14-49 97-132 (1416)
287 KOG1272 WD40-repeat-containing 91.6 0.2 4.3E-06 32.7 2.5 51 18-68 251-301 (545)
288 PF04841 Vps16_N: Vps16, N-ter 91.6 2.1 4.5E-05 27.3 7.0 39 18-56 216-254 (410)
289 PF10168 Nup88: Nuclear pore c 91.0 1.4 3E-05 30.3 6.0 36 16-51 144-182 (717)
290 KOG1064 RAVE (regulator of V-A 90.7 0.57 1.2E-05 35.4 4.3 52 18-69 169-228 (2439)
291 PF07433 DUF1513: Protein of u 90.7 1 2.2E-05 27.9 4.8 37 18-54 216-253 (305)
292 PLN02919 haloacid dehalogenase 90.5 1.1 2.4E-05 31.9 5.4 34 19-52 859-892 (1057)
293 PF08450 SGL: SMP-30/Gluconola 90.3 2.3 5E-05 24.6 7.1 48 20-68 185-232 (246)
294 KOG1912 WD40 repeat protein [G 90.1 0.82 1.8E-05 31.9 4.4 56 13-68 50-117 (1062)
295 PF01011 PQQ: PQQ enzyme repea 89.7 0.9 1.9E-05 19.0 3.9 25 32-56 2-26 (38)
296 PF07569 Hira: TUP1-like enhan 89.6 0.78 1.7E-05 26.8 3.7 27 26-52 18-44 (219)
297 PF05694 SBP56: 56kDa selenium 89.5 1.4 3E-05 28.8 4.9 34 20-53 313-347 (461)
298 KOG2041 WD40 repeat protein [G 89.4 0.66 1.4E-05 32.2 3.6 57 13-69 66-124 (1189)
299 PF14655 RAB3GAP2_N: Rab3 GTPa 89.4 1.8 3.9E-05 27.9 5.3 45 17-61 306-350 (415)
300 KOG1240 Protein kinase contain 89.0 2.7 5.9E-05 30.8 6.3 52 15-66 1192-1244(1431)
301 PF13570 PQQ_3: PQQ-like domai 88.9 1.1 2.3E-05 18.8 3.2 21 29-49 20-40 (40)
302 PF10282 Lactonase: Lactonase, 88.8 3 6.6E-05 25.7 6.0 29 20-48 246-275 (345)
303 PRK04043 tolB translocation pr 88.6 4.6 0.0001 25.8 7.1 33 20-52 189-225 (419)
304 KOG1409 Uncharacterized conser 88.6 0.53 1.2E-05 29.8 2.6 30 20-49 366-395 (404)
305 KOG0882 Cyclophilin-related pe 88.5 0.45 9.7E-06 31.1 2.2 39 18-56 201-239 (558)
306 KOG1645 RING-finger-containing 88.5 1.5 3.2E-05 28.4 4.5 33 18-50 235-268 (463)
307 KOG4497 Uncharacterized conser 88.3 1.5 3.2E-05 27.9 4.3 48 22-69 52-100 (447)
308 COG5354 Uncharacterized protei 87.7 1.6 3.5E-05 28.9 4.3 40 20-59 73-127 (561)
309 KOG3617 WD40 and TPR repeat-co 87.5 0.23 5E-06 34.9 0.6 48 22-69 63-110 (1416)
310 KOG1517 Guanine nucleotide bin 87.1 2.2 4.7E-05 31.0 4.9 34 16-49 1252-1288(1387)
311 KOG1912 WD40 repeat protein [G 87.1 0.85 1.9E-05 31.8 3.0 37 32-68 439-475 (1062)
312 PF01436 NHL: NHL repeat; Int 87.0 1.2 2.7E-05 17.3 3.9 25 21-45 4-28 (28)
313 KOG4190 Uncharacterized conser 86.9 0.62 1.3E-05 31.5 2.2 37 14-52 780-816 (1034)
314 PF08553 VID27: VID27 cytoplas 86.8 2.5 5.5E-05 29.5 5.1 45 20-66 579-624 (794)
315 PF14783 BBS2_Mid: Ciliary BBS 86.7 3.3 7.2E-05 22.0 5.7 34 25-60 9-43 (111)
316 PF01731 Arylesterase: Arylest 86.5 2.7 5.9E-05 21.2 4.0 28 22-49 57-85 (86)
317 PRK04043 tolB translocation pr 85.6 7.1 0.00015 25.0 6.4 34 18-51 232-268 (419)
318 PLN02919 haloacid dehalogenase 85.5 5 0.00011 28.8 6.1 31 21-51 806-836 (1057)
319 PF04762 IKI3: IKI3 family; I 85.1 6.8 0.00015 27.9 6.5 52 17-69 74-129 (928)
320 KOG1916 Nuclear protein, conta 84.8 0.69 1.5E-05 32.8 1.8 25 25-49 242-266 (1283)
321 KOG2066 Vacuolar assembly/sort 84.8 3.1 6.7E-05 29.0 4.7 38 16-56 158-195 (846)
322 KOG2377 Uncharacterized conser 84.0 5.5 0.00012 26.6 5.4 33 17-49 65-97 (657)
323 PF14655 RAB3GAP2_N: Rab3 GTPa 83.9 3.5 7.6E-05 26.6 4.5 40 28-68 77-116 (415)
324 TIGR03300 assembly_YfgL outer 83.6 3.3 7.2E-05 25.5 4.3 32 29-60 319-350 (377)
325 KOG3621 WD40 repeat-containing 83.3 2.5 5.4E-05 29.0 3.8 52 18-69 76-133 (726)
326 PF08954 DUF1900: Domain of un 83.3 5.6 0.00012 21.8 6.0 34 18-51 10-44 (136)
327 PF04762 IKI3: IKI3 family; I 82.8 3.9 8.4E-05 29.0 4.7 29 18-46 120-148 (928)
328 PRK02888 nitrous-oxide reducta 82.8 2.8 6E-05 28.5 3.8 33 19-51 321-354 (635)
329 KOG0309 Conserved WD40 repeat- 82.3 1.3 2.7E-05 31.0 2.2 47 22-68 162-209 (1081)
330 PF13360 PQQ_2: PQQ-like domai 82.0 3.6 7.7E-05 23.3 3.8 26 27-52 209-234 (238)
331 KOG1354 Serine/threonine prote 81.9 3.2 6.9E-05 26.5 3.7 32 18-49 25-56 (433)
332 COG5354 Uncharacterized protei 81.8 2.2 4.7E-05 28.4 3.0 41 13-54 27-67 (561)
333 KOG3630 Nuclear pore complex, 81.8 7.2 0.00016 28.7 5.6 50 18-68 198-251 (1405)
334 PF08596 Lgl_C: Lethal giant l 81.8 10 0.00022 24.3 5.9 51 17-68 85-143 (395)
335 PF02897 Peptidase_S9_N: Proly 81.5 4.9 0.00011 25.2 4.5 30 23-52 128-162 (414)
336 KOG3179 Predicted glutamine sy 81.0 1.4 3E-05 26.1 1.8 55 3-62 140-194 (245)
337 KOG2395 Protein involved in va 80.6 3.4 7.3E-05 27.8 3.6 37 29-66 440-477 (644)
338 KOG2695 WD40 repeat protein [G 80.0 3.4 7.4E-05 26.4 3.3 45 12-56 338-384 (425)
339 PF15390 DUF4613: Domain of un 79.3 4 8.7E-05 27.8 3.7 32 17-48 154-186 (671)
340 PF08553 VID27: VID27 cytoplas 79.3 6 0.00013 27.7 4.6 38 10-48 610-647 (794)
341 PF06433 Me-amine-dh_H: Methyl 79.3 4.6 0.0001 25.5 3.8 39 19-57 289-329 (342)
342 PF08801 Nucleoporin_N: Nup133 76.8 4.8 0.0001 25.5 3.4 31 19-49 190-220 (422)
343 KOG4640 Anaphase-promoting com 75.7 11 0.00024 25.9 4.9 50 18-68 20-70 (665)
344 TIGR02171 Fb_sc_TIGR02171 Fibr 75.6 6.7 0.00014 27.9 4.0 47 16-62 347-400 (912)
345 KOG4460 Nuclear pore complex, 74.7 7.6 0.00016 26.4 3.9 35 20-54 167-204 (741)
346 KOG1920 IkappaB kinase complex 74.6 27 0.00058 26.0 6.7 51 18-69 68-118 (1265)
347 KOG1517 Guanine nucleotide bin 73.4 7.8 0.00017 28.4 3.9 42 18-59 1064-1105(1387)
348 COG2706 3-carboxymuconate cycl 73.1 19 0.00042 22.9 5.3 33 17-49 189-222 (346)
349 KOG2444 WD40 repeat protein [G 71.0 14 0.0003 22.3 4.1 37 24-60 108-144 (238)
350 COG3490 Uncharacterized protei 69.8 16 0.00034 23.1 4.3 40 25-64 120-165 (366)
351 COG2706 3-carboxymuconate cycl 69.2 25 0.00054 22.4 5.1 32 18-49 88-120 (346)
352 PF04053 Coatomer_WDAD: Coatom 69.0 12 0.00025 24.4 3.9 37 30-69 117-153 (443)
353 PF00780 CNH: CNH domain; Int 68.2 22 0.00047 20.9 4.7 36 21-59 231-266 (275)
354 PF07995 GSDH: Glucose / Sorbo 67.9 18 0.0004 22.3 4.5 26 20-46 3-28 (331)
355 PF06977 SdiA-regulated: SdiA- 67.3 25 0.00054 21.2 5.5 44 12-56 15-59 (248)
356 TIGR03075 PQQ_enz_alc_DH PQQ-d 66.9 15 0.00033 24.3 4.1 29 29-57 471-499 (527)
357 PRK13616 lipoprotein LpqB; Pro 66.3 20 0.00044 24.3 4.6 17 21-37 399-415 (591)
358 KOG1275 PAB-dependent poly(A) 66.3 15 0.00033 26.6 4.1 30 18-47 312-341 (1118)
359 KOG2314 Translation initiation 66.3 11 0.00024 25.7 3.4 27 22-49 214-240 (698)
360 KOG1008 Uncharacterized conser 66.1 1.6 3.6E-05 29.8 -0.3 36 15-50 99-139 (783)
361 PF04841 Vps16_N: Vps16, N-ter 66.0 17 0.00036 23.3 4.1 30 18-48 80-109 (410)
362 COG0823 TolB Periplasmic compo 64.8 7.7 0.00017 25.1 2.5 27 24-50 243-272 (425)
363 TIGR03606 non_repeat_PQQ dehyd 64.8 22 0.00047 23.4 4.5 33 18-50 29-61 (454)
364 KOG1275 PAB-dependent poly(A) 63.5 20 0.00044 26.0 4.3 38 29-66 186-223 (1118)
365 PF08309 LVIVD: LVIVD repeat; 62.7 12 0.00027 16.1 4.3 27 29-55 10-36 (42)
366 PF14269 Arylsulfotran_2: Aryl 61.2 36 0.00079 20.9 5.0 38 21-58 146-183 (299)
367 KOG3616 Selective LIM binding 61.1 31 0.00067 25.0 4.8 32 20-51 16-47 (1636)
368 COG3204 Uncharacterized protei 61.1 39 0.00084 21.3 5.0 41 16-56 83-123 (316)
369 KOG4649 PQQ (pyrrolo-quinoline 60.7 28 0.0006 21.8 4.2 33 24-56 99-131 (354)
370 PF12657 TFIIIC_delta: Transcr 60.6 23 0.00051 19.7 3.7 26 22-49 8-33 (173)
371 TIGR03300 assembly_YfgL outer 60.5 22 0.00048 21.9 3.9 25 29-53 104-128 (377)
372 cd00216 PQQ_DH Dehydrogenases 60.1 23 0.0005 23.1 4.0 28 29-56 405-432 (488)
373 KOG0882 Cyclophilin-related pe 59.5 22 0.00048 23.7 3.8 49 7-57 265-314 (558)
374 PRK11138 outer membrane biogen 59.0 34 0.00073 21.4 4.5 27 30-56 335-361 (394)
375 PF14870 PSII_BNR: Photosynthe 58.6 42 0.00091 20.9 7.0 50 18-69 144-195 (302)
376 PF04053 Coatomer_WDAD: Coatom 58.1 24 0.00053 23.0 3.8 28 21-49 147-174 (443)
377 PF10584 Proteasome_A_N: Prote 58.1 4.5 9.8E-05 15.4 0.4 7 26-32 8-14 (23)
378 PF14583 Pectate_lyase22: Olig 58.0 14 0.0003 23.9 2.7 28 25-52 42-72 (386)
379 COG5170 CDC55 Serine/threonine 57.6 13 0.00029 23.7 2.5 33 16-49 170-202 (460)
380 KOG2114 Vacuolar assembly/sort 57.2 58 0.0013 23.5 5.5 52 14-66 210-262 (933)
381 COG3386 Gluconolactonase [Carb 57.2 42 0.00091 20.8 4.6 47 21-68 215-262 (307)
382 KOG2114 Vacuolar assembly/sort 56.7 73 0.0016 23.1 6.0 54 16-69 169-223 (933)
383 TIGR02608 delta_60_rpt delta-6 54.5 22 0.00048 16.4 5.6 34 20-53 2-40 (55)
384 KOG1983 Tomosyn and related SN 53.7 22 0.00047 25.7 3.3 25 27-51 243-267 (993)
385 PRK10115 protease 2; Provision 52.9 74 0.0016 22.0 6.3 31 21-51 129-164 (686)
386 PF10411 DsbC_N: Disulfide bon 52.7 22 0.00049 16.2 2.4 8 21-28 14-21 (57)
387 PF13983 YsaB: YsaB-like lipop 51.6 19 0.00042 17.6 2.0 13 22-34 61-73 (77)
388 PRK10526 acyl-CoA thioesterase 50.9 15 0.00032 22.3 2.0 18 26-43 266-283 (286)
389 KOG2247 WD40 repeat-containing 49.9 16 0.00036 24.6 2.1 45 24-68 123-167 (615)
390 cd03444 Thioesterase_II_repeat 49.7 12 0.00025 19.2 1.2 17 24-40 86-102 (104)
391 PF00930 DPPIV_N: Dipeptidyl p 49.7 30 0.00065 21.4 3.2 32 18-50 42-73 (353)
392 COG3391 Uncharacterized conser 48.9 67 0.0015 20.3 5.8 37 20-56 117-156 (381)
393 PF10214 Rrn6: RNA polymerase 46.7 42 0.00091 23.4 3.7 30 18-47 145-175 (765)
394 COG3204 Uncharacterized protei 46.2 54 0.0012 20.7 3.8 33 18-50 180-212 (316)
395 PF10395 Utp8: Utp8 family; I 45.8 71 0.0015 22.4 4.6 30 18-47 129-158 (670)
396 KOG4532 WD40-like repeat conta 45.5 76 0.0017 20.0 4.5 29 21-49 161-189 (344)
397 PRK02888 nitrous-oxide reducta 45.3 42 0.00091 23.2 3.5 31 19-49 375-405 (635)
398 PF13418 Kelch_4: Galactose ox 43.7 26 0.00057 14.8 1.8 23 28-50 11-39 (49)
399 TIGR02781 VirB9 P-type conjuga 43.4 72 0.0016 19.1 6.0 48 6-54 15-62 (243)
400 KOG0918 Selenium-binding prote 42.9 53 0.0012 21.7 3.5 35 18-52 311-346 (476)
401 PF05935 Arylsulfotrans: Aryls 42.7 97 0.0021 20.4 4.9 40 21-60 273-313 (477)
402 KOG3611 Semaphorins [Signal tr 41.7 71 0.0015 22.6 4.2 32 13-44 458-489 (737)
403 COG4946 Uncharacterized protei 41.6 1.1E+02 0.0025 20.9 6.8 36 16-51 357-393 (668)
404 PF00843 Arena_nucleocap: Aren 41.0 9.7 0.00021 25.1 0.1 17 36-52 148-164 (533)
405 KOG2467 Glycine/serine hydroxy 40.9 34 0.00073 22.5 2.4 23 27-49 338-360 (477)
406 COG3211 PhoX Predicted phospha 39.3 41 0.00088 23.1 2.7 21 16-36 551-571 (616)
407 PF10647 Gmad1: Lipoprotein Lp 38.0 89 0.0019 18.6 6.1 29 20-48 113-144 (253)
408 COG3823 Glutamine cyclotransfe 37.9 55 0.0012 19.9 2.9 26 29-54 55-82 (262)
409 PF13964 Kelch_6: Kelch motif 37.1 40 0.00087 14.4 2.7 22 29-50 11-38 (50)
410 PF12768 Rax2: Cortical protei 37.0 1E+02 0.0022 19.0 5.9 34 17-50 35-74 (281)
411 PF12566 DUF3748: Protein of u 36.6 32 0.00069 18.6 1.6 22 25-46 74-95 (122)
412 KOG4305 RhoGEF GTPase [Signal 35.8 1.2E+02 0.0027 22.4 4.7 27 32-59 964-990 (1029)
413 TIGR03074 PQQ_membr_DH membran 35.6 89 0.0019 22.2 3.9 27 29-55 690-717 (764)
414 TIGR00189 tesB acyl-CoA thioes 35.1 30 0.00065 20.5 1.6 19 24-42 252-270 (271)
415 KOG1900 Nuclear pore complex, 34.9 1.1E+02 0.0023 23.3 4.3 34 16-49 240-273 (1311)
416 PF11635 Med16: Mediator compl 34.0 1.4E+02 0.0029 21.1 4.6 36 18-53 259-294 (753)
417 cd06919 Asp_decarbox Aspartate 33.5 54 0.0012 17.5 2.2 17 40-56 41-57 (111)
418 KOG4521 Nuclear pore complex, 32.1 17 0.00036 27.1 0.2 30 21-50 272-303 (1480)
419 PF12234 Rav1p_C: RAVE protein 31.8 1.8E+02 0.0039 20.3 5.6 42 27-68 38-80 (631)
420 PF15644 Tox-PL: Papain fold t 30.1 82 0.0018 16.2 2.6 31 21-51 77-109 (111)
421 PF03088 Str_synth: Strictosid 30.0 83 0.0018 15.9 3.0 15 21-35 59-73 (89)
422 PRK05449 aspartate alpha-decar 29.9 66 0.0014 17.6 2.2 17 40-56 42-58 (126)
423 KOG2395 Protein involved in va 29.7 1.6E+02 0.0034 20.4 4.2 37 11-48 464-500 (644)
424 PF14761 HPS3_N: Hermansky-Pud 28.9 1.3E+02 0.0029 17.9 5.4 37 31-68 29-67 (215)
425 PF02870 Methyltransf_1N: 6-O- 28.9 53 0.0012 15.5 1.7 20 26-45 8-27 (77)
426 TIGR00223 panD L-aspartate-alp 28.8 71 0.0015 17.4 2.2 17 40-56 42-58 (126)
427 KOG2727 Rab3 GTPase-activating 28.6 43 0.00094 24.6 1.6 35 33-68 103-137 (1244)
428 PF05096 Glu_cyclase_2: Glutam 28.4 1.5E+02 0.0032 18.3 3.9 32 23-54 49-82 (264)
429 KOG1920 IkappaB kinase complex 28.4 1.4E+02 0.0031 22.6 4.1 28 17-44 108-135 (1265)
430 PF14782 BBS2_C: Ciliary BBSom 27.9 1E+02 0.0022 20.3 3.2 27 19-45 15-42 (431)
431 PF14567 SUKH_5: SMI1-KNR4 cel 27.1 91 0.002 17.1 2.5 26 25-51 89-114 (132)
432 PF12341 DUF3639: Protein of u 26.7 56 0.0012 12.8 3.8 24 20-45 3-26 (27)
433 COG4831 Roadblock/LC7 domain [ 26.5 51 0.0011 17.2 1.4 15 20-34 14-28 (109)
434 PF14727 PHTB1_N: PTHB1 N-term 25.9 96 0.0021 20.3 2.8 20 30-49 37-56 (418)
435 COG5167 VID27 Protein involved 25.9 1.2E+02 0.0026 21.1 3.2 20 29-48 572-591 (776)
436 PF10433 MMS1_N: Mono-function 25.7 1.5E+02 0.0033 19.4 3.7 29 21-49 46-74 (504)
437 PF09142 TruB_C: tRNA Pseudour 25.3 79 0.0017 14.4 1.8 14 23-36 29-42 (56)
438 TIGR01204 bioW 6-carboxyhexano 25.3 1.4E+02 0.003 18.1 3.1 34 16-49 163-199 (232)
439 PF07865 DUF1652: Protein of u 25.3 96 0.0021 15.0 3.6 16 41-56 28-43 (69)
440 COG4247 Phy 3-phytase (myo-ino 25.2 1.7E+02 0.0036 18.5 3.5 32 24-56 61-92 (364)
441 smart00415 HSF heat shock fact 24.4 98 0.0021 15.8 2.2 14 23-36 21-34 (105)
442 PF02261 Asp_decarbox: Asparta 24.4 82 0.0018 16.9 1.9 16 40-55 42-57 (116)
443 COG5169 HSF1 Heat shock transc 24.0 83 0.0018 19.5 2.1 14 23-36 29-42 (282)
444 COG1946 TesB Acyl-CoA thioeste 24.0 74 0.0016 19.9 1.9 18 26-43 266-283 (289)
445 smart00135 LY Low-density lipo 23.4 68 0.0015 12.6 4.1 29 21-49 11-40 (43)
446 PF11090 DUF2833: Protein of u 23.3 1.2E+02 0.0026 15.4 2.5 26 24-50 3-28 (86)
447 PLN02868 acyl-CoA thioesterase 23.0 68 0.0015 20.5 1.7 17 24-40 395-411 (413)
448 PF09081 DUF1921: Domain of un 22.9 78 0.0017 14.3 1.4 10 37-46 42-51 (51)
449 KOG0183 20S proteasome, regula 22.7 58 0.0013 19.6 1.2 9 26-34 11-19 (249)
450 PF14939 DCAF15_WD40: DDB1-and 22.4 1.9E+02 0.004 17.3 4.3 33 23-55 35-80 (211)
451 PRK01322 6-carboxyhexanoate--C 22.0 1.7E+02 0.0037 17.8 3.1 34 16-49 170-206 (242)
452 PF03646 FlaG: FlaG protein; 21.7 1.1E+02 0.0025 15.5 2.1 17 41-57 69-85 (107)
453 cd07571 ALP_N-acyl_transferase 21.5 1.9E+02 0.0042 17.2 3.6 30 22-51 221-251 (270)
454 cd01211 GAPCenA GAPCenA Phosph 21.4 1.6E+02 0.0034 16.1 4.0 20 36-55 47-66 (125)
455 KOG0084 GTPase Rab1/YPT1, smal 21.4 35 0.00076 20.1 0.2 14 41-54 59-72 (205)
456 PF07250 Glyoxal_oxid_N: Glyox 21.3 2E+02 0.0044 17.4 4.3 31 24-56 175-205 (243)
457 PF04052 TolB_N: TolB amino-te 21.2 65 0.0014 16.2 1.2 12 41-52 93-104 (105)
458 PHA03092 semaphorin-like prote 21.1 1.6E+02 0.0034 15.9 3.6 21 29-49 71-91 (134)
459 PF01394 Clathrin_propel: Clat 20.5 67 0.0014 13.3 0.9 11 38-48 27-37 (37)
460 KOG3535 Adaptor protein Disabl 20.3 2.2E+02 0.0048 19.1 3.5 30 33-68 95-124 (557)
461 COG0853 PanD Aspartate 1-decar 20.2 1.7E+02 0.0037 16.0 3.4 17 39-55 40-56 (126)
462 COG2133 Glucose/sorbosone dehy 20.2 1.7E+02 0.0037 19.2 3.0 31 8-38 165-196 (399)
463 PF05787 DUF839: Bacterial pro 20.2 1.1E+02 0.0025 20.5 2.3 20 17-36 500-519 (524)
464 PF09984 DUF2222: Uncharacteri 20.0 1.8E+02 0.0039 16.2 3.7 27 17-43 49-76 (146)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=1.6e-14 Score=88.25 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=58.2
Q ss_pred cchhhhh--hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 4 FGAAAVA--TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 4 ~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
|+--+|. ...+.+|..+|++++|+|+|+.|++|+.|.++|+||+.+...+.+.++|..+|.|++||
T Consensus 99 frvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvaws 166 (480)
T KOG0271|consen 99 FRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWS 166 (480)
T ss_pred hcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEEC
Confidence 3333444 45677999999999999999999999999999999999988889999999999999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=1.1e-12 Score=80.36 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=51.3
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc-EEeccCCCcEEEEEe
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP-VIVAMHDAPIKTIRL 68 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~-~~~~~h~~~i~~v~~ 68 (69)
...+|...|++++|+|||+.|++|+-|+.|++||-++|+++ ..+.+|.++|.+++|
T Consensus 152 t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Law 208 (480)
T KOG0271|consen 152 TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAW 208 (480)
T ss_pred eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEee
Confidence 34579999999999999999999999999999999998776 679999999999988
No 3
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.34 E-value=6.5e-12 Score=78.65 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=55.3
Q ss_pred hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
..+.+.+|...|.+++|+|+++.+++|+.|++|++||++++++...+.+|..+|.++.|+
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 345566999999999999999999999999999999999999999999999999999885
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.34 E-value=2.2e-12 Score=79.45 Aligned_cols=56 Identities=16% Similarity=0.331 Sum_probs=52.1
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+.+|..+|++++|+|+|-.|++|+.|++++|||+.....+..+++|..-|+.|+|+
T Consensus 341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~ 396 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYS 396 (459)
T ss_pred ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEec
Confidence 45799999999999999999999999999999999888889999999999999875
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.33 E-value=3.1e-12 Score=78.80 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=56.7
Q ss_pred hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
..+.+..+|+.+|.+++|.+||..+++|+.|..-++||+.+|.++..+.+|.++|..|.||
T Consensus 294 ~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs 354 (459)
T KOG0272|consen 294 SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS 354 (459)
T ss_pred hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeEC
Confidence 3455677999999999999999999999999999999999999999999999999999996
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.32 E-value=5.7e-12 Score=74.58 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=58.0
Q ss_pred hhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 7 AAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 7 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.++..+...+|+..|.++..++||++.+++++|+++++||+.+++..+.+.+|...|.+++||
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s 114 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS 114 (315)
T ss_pred cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEec
Confidence 346677888999999999999999999999999999999999988888899999999999986
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.29 E-value=7.8e-12 Score=80.86 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=55.5
Q ss_pred hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
...+...+|.++|.+++|||+|++|++|+.|+.|++||+.+++.+..+.+|..-|.++.||
T Consensus 568 ~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS 628 (707)
T KOG0263|consen 568 NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFS 628 (707)
T ss_pred cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEe
Confidence 3355667899999999999999999999999999999999988888899999999999986
No 8
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.28 E-value=1.9e-11 Score=73.08 Aligned_cols=55 Identities=51% Similarity=0.728 Sum_probs=50.4
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
....|.+||++++|+.||..+++|+.|+.+++||+.++ +...+..|..+|.+++|
T Consensus 67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~w 121 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHW 121 (347)
T ss_pred hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEE
Confidence 44568999999999999999999999999999999996 77888899999999988
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.26 E-value=1.6e-11 Score=79.45 Aligned_cols=57 Identities=23% Similarity=0.201 Sum_probs=53.5
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+.+|++||..+.|+|+.++|++|++|+++|+|.+.+-.+...+++|..||+.++|+
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~ 502 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA 502 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec
Confidence 366899999999999999999999999999999999988888889999999999985
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.25 E-value=2.9e-11 Score=78.75 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=52.5
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.++|...+.+++++|||+++++|+.|++|++||..+|-|+.++..|...|..+.|+
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~ 401 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT 401 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE
Confidence 45799999999999999999999999999999999999999999999999999874
No 11
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=1.4e-11 Score=72.01 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=55.3
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
++...+|..+|++++.+.|...+++|+.|+.+++||+++|+..+.+.+|...|+.++|+
T Consensus 52 iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 52 IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN 110 (307)
T ss_pred eeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEec
Confidence 45667899999999999999999999999999999999999999999999999999986
No 12
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=6.2e-11 Score=71.51 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=50.5
Q ss_pred CcccchhhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 1 MATFGAAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
|+||+.+ +.+..|..||.+++||+||+.|++++.|..+.+||+..|.+++.+. -..+|+.+.|
T Consensus 52 ~~T~~ia----r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~ 114 (405)
T KOG1273|consen 52 FDTFRIA----RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQW 114 (405)
T ss_pred ccccchh----hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeee
Confidence 5677733 4556899999999999999999999999999999999988766553 4556665554
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1e-10 Score=73.28 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=51.9
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEEC-CCCCccEEeccCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPL-LSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~-~t~~~~~~~~~h~~~i~~v~~s 69 (69)
....+|...|.+++|+||++++++++.|+++++||+ ..+.+++.+.+|...|.++.|+
T Consensus 197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~ 255 (456)
T KOG0266|consen 197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS 255 (456)
T ss_pred ccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEec
Confidence 344789999999999999999999999999999999 4456778899999999999985
No 14
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.17 E-value=7.3e-11 Score=50.89 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=32.6
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWP 46 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd 46 (69)
....+|..+|.+++|+|++++|++++.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678999999999999999999999999999998
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.17 E-value=9e-11 Score=69.59 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=54.0
Q ss_pred hhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccC--CCcEEEEEeC
Q 035276 7 AAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMH--DAPIKTIRLL 69 (69)
Q Consensus 7 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h--~~~i~~v~~s 69 (69)
+++.+.+..+|..-|++++|++|.+.+++|+.|++|++|++.. .+..++..+ ..+|.|+.|+
T Consensus 94 ~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 94 TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEc
Confidence 3466788889999999999999999999999999999999987 677766544 7899999996
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.17 E-value=1.1e-10 Score=69.75 Aligned_cols=62 Identities=31% Similarity=0.492 Sum_probs=56.4
Q ss_pred hhhhhccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 7 AAVATNQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 7 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
++..+....+|.+-|++++++| +++.+++|+.|+..++||+..+.+.+.+.+|...|+.++|
T Consensus 175 ~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f 237 (343)
T KOG0286|consen 175 TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF 237 (343)
T ss_pred cceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE
Confidence 3445556679999999999999 9999999999999999999999999999999999999987
No 17
>PTZ00421 coronin; Provisional
Probab=99.14 E-value=4.2e-10 Score=71.38 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=48.7
Q ss_pred CCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCC-------ccEEeccCCCcEEEEEeC
Q 035276 14 NPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGG-------QPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~-------~~~~~~~h~~~i~~v~~s 69 (69)
+.+|.++|.+++|+| +++.|++++.|++|++||+.++. .+..+.+|...|.+++|+
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~ 134 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFH 134 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeC
Confidence 457999999999999 88999999999999999997642 345778999999999985
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.11 E-value=2.5e-10 Score=69.84 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=54.0
Q ss_pred hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
..+-+.+|.+.|.++++.|..+++++|+.|++++|||+.+|....++.+|-..|+.+++|
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS 202 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVS 202 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeec
Confidence 344566899999999999999999999999999999999988888899999999998875
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.11 E-value=4.5e-10 Score=66.11 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=52.1
Q ss_pred hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC-CccEEeccCCCcEEEEEeC
Q 035276 9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG-GQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~-~~~~~~~~h~~~i~~v~~s 69 (69)
+.+...+.|++-++.|.||||+++|++++.|++++||++++- +....+.+|..+++.++||
T Consensus 206 ~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 206 EPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred eEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 345567788999999999999999999999999999999874 3335678999999999997
No 20
>PTZ00421 coronin; Provisional
Probab=99.09 E-value=7.3e-10 Score=70.29 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=51.4
Q ss_pred ccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
..+.+|...|.+++|+|++ ..|++++.|++|++||++++..+..+.+|...|.+++|+
T Consensus 119 ~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 119 VHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred EEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence 3456799999999999986 689999999999999999987778888999999999985
No 21
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.09 E-value=3.6e-10 Score=73.39 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=52.9
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+.+|...|.++.|+|..+.+++++.|++|+||.+.+..|+.++.||...|..+.|
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F 555 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF 555 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee
Confidence 45689999999999999999999999999999999999999999999999998887
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.07 E-value=4.4e-10 Score=66.15 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=50.9
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
..+.+|...+.+++||.||++|++++.|..+++||+..++.++...+|.+...|++.
T Consensus 252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 252 LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred EEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 356688899999999999999999999999999999999888888899888777764
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.07 E-value=4.7e-10 Score=68.46 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=51.3
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+.+|...|.+++|+|.|++|+++..|+++++||++.+.|+..+..|..-+.++.|
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 45689999999999999999999999999999999999999888899888888766
No 24
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.07 E-value=6.5e-11 Score=71.96 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=49.8
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec-cCCCcEEEEEeC
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA-MHDAPIKTIRLL 69 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~-~h~~~i~~v~~s 69 (69)
+..+|+++.|+.|.+.|++|+.||+|++|.+++|.|++.+. .|...|.|+.||
T Consensus 262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS 315 (508)
T KOG0275|consen 262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS 315 (508)
T ss_pred cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEc
Confidence 67899999999999999999999999999999999998875 899999999986
No 25
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.06 E-value=5.1e-10 Score=67.06 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=50.8
Q ss_pred Ccccchhhhhhcc---------CCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCC-Cc-cEEeccCCCcEEEEEe
Q 035276 1 MATFGAAAVATNQ---------NPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSG-GQ-PVIVAMHDAPIKTIRL 68 (69)
Q Consensus 1 ~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~-~~-~~~~~~h~~~i~~v~~ 68 (69)
|++||+.+..... ....+..|..++|||.. ..++.+++|++||+|+++.. .. ......|.++|.++.|
T Consensus 1 ms~Fg~~~~~~~~~~~~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~W 80 (347)
T KOG0647|consen 1 MSLFGSSASAQTTADPNKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCW 80 (347)
T ss_pred CCccCCcccccccCCcccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEE
Confidence 8899955544322 12356778899999954 45668999999999999863 22 2456789999999999
Q ss_pred C
Q 035276 69 L 69 (69)
Q Consensus 69 s 69 (69)
+
T Consensus 81 s 81 (347)
T KOG0647|consen 81 S 81 (347)
T ss_pred c
Confidence 6
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.03 E-value=7.4e-10 Score=66.30 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=49.1
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEE
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v 66 (69)
..+|++.|+.+.|++|++.|++++.|++++.||.++|++.+.+++|..-++.+
T Consensus 86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~ 138 (338)
T KOG0265|consen 86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSL 138 (338)
T ss_pred eccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeec
Confidence 34899999999999999999999999999999999999999999998887765
No 27
>PTZ00420 coronin; Provisional
Probab=99.00 E-value=3.2e-09 Score=68.42 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=47.9
Q ss_pred cCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCc--------cEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQ--------PVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~--------~~~~~~h~~~i~~v~~s 69 (69)
.+.+|..+|.+++|+|+ +..|++|+.|++|++||+.++.. +..+.+|...|.+++|+
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~ 134 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWN 134 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEEC
Confidence 45689999999999997 78999999999999999976421 23567899999999985
No 28
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.00 E-value=2.4e-09 Score=66.33 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=50.5
Q ss_pred hhccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCC-CCccEEeccCCCcEEEEEeC
Q 035276 10 ATNQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLS-GGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t-~~~~~~~~~h~~~i~~v~~s 69 (69)
.......|+++|.+++|+|-+ ..|++|+.|++|++||++. ..++..+.+|...|..|.||
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS 325 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS 325 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence 344566799999999999955 4678999999999999976 34567889999999999996
No 29
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.1e-09 Score=64.56 Aligned_cols=65 Identities=14% Similarity=0.289 Sum_probs=53.3
Q ss_pred cchhhhhhccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCC-ccEEeccCCCcEEEEEeC
Q 035276 4 FGAAAVATNQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGG-QPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 4 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~-~~~~~~~h~~~i~~v~~s 69 (69)
++.+.+... ++.|..++++|.|++ +...|++|+.|+.|+.||+..-+ .+.++.+|...|+.++||
T Consensus 177 vr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 177 VRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred ecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence 344555554 778999999999999 45677999999999999998743 457789999999999986
No 30
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.99 E-value=1.4e-09 Score=69.07 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=46.6
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.-+.+++|+|+|||++|++|+.|.-|.+|.+..++.+.--++|..+|..|+|
T Consensus 331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAF 382 (636)
T ss_pred hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEee
Confidence 4567899999999999999999999999999886666666899999999998
No 31
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.97 E-value=2.2e-09 Score=70.28 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=46.9
Q ss_pred hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEEe
Q 035276 10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIRL 68 (69)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~~ 68 (69)
-..+...|.++|+++.|+|++.+|++||.|++|++||..+++....+ -....++.+++|
T Consensus 212 ~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkW 271 (839)
T KOG0269|consen 212 CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKW 271 (839)
T ss_pred HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeee
Confidence 34456689999999999999999999999999999999865432222 234577888888
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.97 E-value=1.3e-09 Score=66.75 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=50.3
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
...+.+|++.|+++.|. .+.+++|+.|.+|++||+++|+++..+-+|...|..+.|+
T Consensus 230 ~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ 286 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS 286 (499)
T ss_pred HHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence 34567899999999996 4689999999999999999999999888999999888875
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=5.3e-09 Score=62.09 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=49.9
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC--CccEEeccCCCcEEEEEeC
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG--GQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~--~~~~~~~~h~~~i~~v~~s 69 (69)
..+|...|.+++|+|.|++|++++-|.++.||.-..+ ++...+.+|...|.+++||
T Consensus 57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws 114 (312)
T KOG0645|consen 57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS 114 (312)
T ss_pred cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc
Confidence 3478999999999999999999999999999997764 3567789999999999996
No 34
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.93 E-value=2e-09 Score=66.16 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=52.1
Q ss_pred chhhhhhccCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCcc--EEeccCCCcEEEEEeC
Q 035276 5 GAAAVATNQNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQP--VIVAMHDAPIKTIRLL 69 (69)
Q Consensus 5 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~~--~~~~~h~~~i~~v~~s 69 (69)
|.=.|..+...+|+..|-+++|||. ...+++|+.|++|+|||+..+.+. .....|...|+.+.||
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWn 311 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWN 311 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEcc
Confidence 4445566666789999999999995 567899999999999999986332 3347899999999986
No 35
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.91 E-value=9.9e-09 Score=61.50 Aligned_cols=59 Identities=8% Similarity=0.114 Sum_probs=53.0
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
++.+.+|.+.|.++.|++|+++|++++.||++.+||..|..+...++-...+|..++|+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYS 106 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEEC
Confidence 35677899999999999999999999999999999999877777788888999988885
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.91 E-value=1.3e-08 Score=57.48 Aligned_cols=57 Identities=21% Similarity=0.378 Sum_probs=49.4
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+.+|..+|.+++|+|+++.|++++.|+.+++||+.+++....+..|...+..+.|+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~ 60 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEEC
Confidence 445899999999999999999999999999999999877667778888888777763
No 37
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.91 E-value=7.7e-09 Score=61.47 Aligned_cols=58 Identities=19% Similarity=0.380 Sum_probs=49.9
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+....+|.+.|++|+.+-+.+++++|+.|.++++||+++|+++..+. ...+|+.+.|+
T Consensus 45 lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~ 102 (327)
T KOG0643|consen 45 LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFS 102 (327)
T ss_pred eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeec
Confidence 44567899999999999999999999999999999999998877764 55677777764
No 38
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.89 E-value=3.8e-09 Score=68.96 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=48.8
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
....+|.+.|+++.|+. ..+|++++.|++|++|++....|+..+ .|...|+||+|+
T Consensus 363 ~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFN 418 (712)
T ss_pred hhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEec
Confidence 34558999999999996 567999999999999999987787777 599999999995
No 39
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.89 E-value=7.1e-09 Score=68.38 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=46.7
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+..-+|+..|.+.+|||||++|++++.|++|++||+.++.++..+. -..+...+.||
T Consensus 569 vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~S 626 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFS 626 (910)
T ss_pred hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEEC
Confidence 34556899999999999999999999999999999999987766552 34455555554
No 40
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.88 E-value=4.9e-09 Score=62.06 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=53.6
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
...+..|.....++.|+|+|+++++|+.|-.+.+||++..-|.+.+..+.-+|+.+.||
T Consensus 182 v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 182 VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS 240 (313)
T ss_pred ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec
Confidence 44556788889999999999999999999999999998878889999999999999986
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.87 E-value=5.2e-09 Score=68.21 Aligned_cols=57 Identities=16% Similarity=0.318 Sum_probs=53.2
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~ 67 (69)
++...+|...|+.+.|-.+++.|++++.||-+++|++.++.|+..+.+|..+|+.++
T Consensus 540 lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~ 596 (775)
T KOG0319|consen 540 LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALS 596 (775)
T ss_pred eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEe
Confidence 456778999999999999999999999999999999999999999999999999875
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.87 E-value=3.9e-09 Score=65.32 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=54.1
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+.+.+|..-|.+++|.|....|++++.|..|++||..++.|+.++.+|..-|..++|+
T Consensus 216 ~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~ 273 (464)
T KOG0284|consen 216 RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFN 273 (464)
T ss_pred heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEc
Confidence 4557899999999999999999999999999999999999999999999999999985
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.87 E-value=1.5e-08 Score=60.80 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=51.2
Q ss_pred hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc--cEEeccCCCcEEEEEeC
Q 035276 9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ--PVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~--~~~~~~h~~~i~~v~~s 69 (69)
+.+-..++|.++|..+.|+|+|+.+++|+.|..|.+|++.. .| ...+.+|.+.|..+.|.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGM 99 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeec
Confidence 34556789999999999999999999999999999999764 33 45678999999998874
No 44
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.86 E-value=8.5e-09 Score=64.38 Aligned_cols=54 Identities=19% Similarity=0.355 Sum_probs=50.6
Q ss_pred CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+|...+++++.++||++|++|+.|..|+|||..+.+.+..+.+|...|.+++|
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~f 252 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAF 252 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeee
Confidence 378899999999999999999999999999999998888889999999999887
No 45
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.86 E-value=8.3e-09 Score=67.69 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=43.6
Q ss_pred hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC-ccEEeccCCCcEEEEEe
Q 035276 10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG-QPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~-~~~~~~~h~~~i~~v~~ 68 (69)
.+.-+.+|++||.+++|+|++..|+++++|++|++||+.... ...++ .+...+..++|
T Consensus 470 llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsf 528 (893)
T KOG0291|consen 470 LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSF 528 (893)
T ss_pred eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEE
Confidence 345567999999999999999999999999999999997642 22333 24444444444
No 46
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.85 E-value=1.6e-08 Score=64.22 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=56.3
Q ss_pred chhhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec---cCCCcEEEEEeC
Q 035276 5 GAAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA---MHDAPIKTIRLL 69 (69)
Q Consensus 5 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~---~h~~~i~~v~~s 69 (69)
|++-........|..-|.++.|+|||+++++.+.|+++.+||=.+|+.+..+. +|.+.|..+.|+
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs 244 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS 244 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC
Confidence 44444455556788889999999999999999999999999999999888886 899999999996
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1.7e-08 Score=59.92 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=49.6
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC---ccEEeccCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG---QPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~---~~~~~~~h~~~i~~v~~s 69 (69)
..+.+|..+|.+++|+++|++|++|+.|+.|-+|.+..+. +...+..|...|..+.|.
T Consensus 99 ~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 99 ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 3456899999999999999999999999999999997544 345678999999888773
No 48
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.85 E-value=1.1e-08 Score=64.16 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=48.2
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+-....|..||.+++|+|+|+++++|+.|+.|.+|++++++..+.+.+ ...|..+.||
T Consensus 445 i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn 502 (524)
T KOG0273|consen 445 IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWN 502 (524)
T ss_pred eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEc
Confidence 334557999999999999999999999999999999999877666653 4457778775
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=5e-09 Score=69.86 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=53.9
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+.....|.+||..++|.|.+..+++|+.|.+|++|+..+.+|+.++.+|...|+.+.|.
T Consensus 44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FH 102 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFH 102 (1202)
T ss_pred HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeecc
Confidence 44556799999999999999999999999999999999999999999999999998773
No 50
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.4e-08 Score=65.39 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=48.6
Q ss_pred CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+|++.|.++...|.|..|++|+.||+|++|.+.+|.|+..+. -...|.|++|+
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~ 450 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWN 450 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEec
Confidence 4799999999999999999999999999999999999988764 45679999985
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.3e-08 Score=65.82 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=50.2
Q ss_pred cCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 13 QNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
...+|+.-|+.++|+| |.+.+++++.|++|++|.+....+..++.+|.+.|+|+.|
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdy 191 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDY 191 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEe
Confidence 3458999999999999 5678999999999999999887788899999999999865
No 52
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.83 E-value=1.3e-08 Score=63.96 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=51.9
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
....+|.++|..+.|+|.+..|++++.|+++++|....+.+..-+.+|...|..+.||
T Consensus 353 ~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~ws 410 (524)
T KOG0273|consen 353 KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWS 410 (524)
T ss_pred eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeec
Confidence 3445699999999999999999999999999999987777777889999999999886
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.82 E-value=9.2e-09 Score=63.19 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=54.2
Q ss_pred hhhhhhccCCCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCC-ccEEeccCCCcEEEEEeC
Q 035276 6 AAAVATNQNPNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGG-QPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 6 ~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~-~~~~~~~h~~~i~~v~~s 69 (69)
...+...++.+|...|..+.|+|... .|++++.|+++++||+.+.+ .++.+.+|..+|.++.|+
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence 34455567789999999999999766 56899999999999998855 678899999999999885
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.82 E-value=2.7e-09 Score=66.83 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=47.5
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
++...+|..+|.+++|+++|+.+++++-|+.+++||+++|.++..+. ....+.|++|
T Consensus 251 lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf 307 (503)
T KOG0282|consen 251 LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKF 307 (503)
T ss_pred ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeec
Confidence 45667899999999999999999999999999999999998877663 3344566665
No 55
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.81 E-value=1.5e-08 Score=63.18 Aligned_cols=51 Identities=27% Similarity=0.409 Sum_probs=47.1
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
-.+.+.+|.|||-.+.+|..|+.+++||+..+.....+++|.++|..++|+
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs 398 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS 398 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEec
Confidence 347889999999999999999999999999988888899999999999996
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.81 E-value=1.5e-09 Score=66.56 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=46.5
Q ss_pred hhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 8 AVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 8 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+...+.+.+|...|-++.+ .++++++|+.|.+|++||++.|.+++.+.||+.-|+|++|.
T Consensus 350 ~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd 409 (499)
T KOG0281|consen 350 CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 409 (499)
T ss_pred eeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec
Confidence 3445566677777777766 47788888888888888888888888888888888888774
No 57
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.81 E-value=3.1e-09 Score=66.03 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=49.2
Q ss_pred CCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 15 PNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+|+..|+.++|+..-+ .|++|+.|++|++||+.++++...+..|..+|++++|.
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh 295 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWH 295 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEec
Confidence 36888999999999755 67999999999999999999988998999999999984
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.81 E-value=1.9e-08 Score=62.35 Aligned_cols=49 Identities=18% Similarity=0.347 Sum_probs=41.0
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCC-C-cEEEEEeC
Q 035276 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHD-A-PIKTIRLL 69 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~-~-~i~~v~~s 69 (69)
...+.|||++.++++|+.||.|++|++.++++...+.... . .|.+++|+
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN 440 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc
Confidence 5668899999999999999999999999988766664433 2 59999985
No 59
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.79 E-value=2.1e-08 Score=61.35 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=55.0
Q ss_pred hhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 7 AAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 7 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+.-..++...|..+|..+.|-+ ..+|++++.+|+|++||.++|.+...+.+|...|.+.+++
T Consensus 316 a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 316 AASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS 377 (399)
T ss_pred ccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence 3445778888999999999998 7899999999999999999999989999999999988753
No 60
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.79 E-value=2.1e-08 Score=61.61 Aligned_cols=60 Identities=15% Similarity=0.324 Sum_probs=54.2
Q ss_pred hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
...+...+|...|.+++..|.-..|++|+.|.++++||+.+...+..+.+|..+|.++.+
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~ 285 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC 285 (460)
T ss_pred hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEe
Confidence 346778899999999999999999999999999999999998888889999999988765
No 61
>PTZ00420 coronin; Provisional
Probab=98.78 E-value=5.9e-08 Score=62.67 Aligned_cols=56 Identities=9% Similarity=0.133 Sum_probs=46.1
Q ss_pred cCCCCCCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
...+|...|.+++|+|++..+ ++++.|++|++||+.++.....+. |...|.+++|+
T Consensus 120 ~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws 176 (568)
T PTZ00420 120 ILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN 176 (568)
T ss_pred EeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC
Confidence 346788999999999998765 789999999999999876655554 66778998885
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.1e-08 Score=59.40 Aligned_cols=49 Identities=24% Similarity=0.462 Sum_probs=43.6
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc-CCCcEEEEEeC
Q 035276 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM-HDAPIKTIRLL 69 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~-h~~~i~~v~~s 69 (69)
..+++|+||++++++|..||+|.+|+++++.....+.+ +..++.+++|+
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFN 284 (311)
T ss_pred ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccC
Confidence 37889999999999999999999999999888777776 78888888875
No 63
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.77 E-value=3.3e-08 Score=62.84 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=48.8
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc-CCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM-HDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~-h~~~i~~v~~s 69 (69)
....|.++|.+++|+||+.+|+++-..+++.+||++++.....-.. |..+|.+++||
T Consensus 482 ~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWs 539 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWS 539 (603)
T ss_pred eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeC
Confidence 4456899999999999999999999999999999998665433333 99999999996
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.77 E-value=3.7e-08 Score=57.90 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=51.7
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~ 67 (69)
+..+.++.++|..+.|+-||++.++++.|++|++|+...|.++.++.+|...|..++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~ 66 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAA 66 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecc
Confidence 445678999999999999999999999999999999999999999999999887765
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2e-08 Score=59.41 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=52.7
Q ss_pred hhhhccCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 8 AVATNQNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 8 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+-.+.-...|..+|.++.|++. ++.++++++|++|++||-.-+..+.++.+|...|...+||
T Consensus 94 s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 94 SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence 3345556679999999999995 5567889999999999998878889999999999998886
No 66
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.76 E-value=2.4e-08 Score=60.05 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=46.5
Q ss_pred CCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCC-ccEEeccCCCcEEEEEeC
Q 035276 15 PNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGG-QPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~-~~~~~~~h~~~i~~v~~s 69 (69)
..|.-.|.++.|+|+.+ +|++|+.|+.|++||+...+ .+.++.+|.-+|++|+|+
T Consensus 211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence 35777899999999877 46899999999999997533 457889999999999985
No 67
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.75 E-value=2.3e-09 Score=67.16 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=52.1
Q ss_pred ccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCC-CCccEEeccCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLS-GGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t-~~~~~~~~~h~~~i~~v~~s 69 (69)
..+.+|...|..+.|.| .+..|++++.|++|++|++.+ +.+++++.+|..+|+.+.||
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s 267 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFN 267 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcc
Confidence 35678999999999999 677889999999999999987 78889999999999999886
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.75 E-value=2e-08 Score=65.99 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=53.4
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
..+-+|.-||+++..+||++.+++|+.|+.|++|.+.=|.|...+.+|...|.++.|
T Consensus 544 lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F 600 (888)
T KOG0306|consen 544 LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF 600 (888)
T ss_pred eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEE
Confidence 355689999999999999999999999999999999999999999999999999987
No 69
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.75 E-value=1.2e-08 Score=66.77 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=32.4
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
.|.+.|+++.|++||++|++||.|+.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie 298 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIE 298 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEec
Confidence 7999999999999999999999999999999855
No 70
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.74 E-value=1.4e-08 Score=62.96 Aligned_cols=53 Identities=9% Similarity=0.155 Sum_probs=47.4
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
|...|.+++|+|+...+++++.|++|+|||....+....+.+|...|.++.|.
T Consensus 179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence 34789999999999999999999999999998777777889999999999884
No 71
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.73 E-value=7.6e-08 Score=58.99 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=54.2
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+.....|+.+|.+++.+|+.+.+++|+.|..-.+|++.++..+..+.+|...|.++.||
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs 115 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS 115 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc
Confidence 34556899999999999999999999999999999999998888999999999999996
No 72
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=2.7e-08 Score=60.35 Aligned_cols=49 Identities=14% Similarity=0.172 Sum_probs=45.1
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
-.++.|++-|.+|+.|+.||.|.+||..|...-+.+.+|..+|.++.||
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS 74 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWS 74 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEec
Confidence 5789999999999999999999999999966667889999999999997
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.3e-08 Score=62.15 Aligned_cols=56 Identities=27% Similarity=0.281 Sum_probs=51.4
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
..+|..+|..+.|++|+.++++|+.|..+.|||......+..+..|...|..++|+
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWC 352 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeC
Confidence 56799999999999999999999999999999997766778889999999999985
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.70 E-value=4.5e-08 Score=61.47 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=51.9
Q ss_pred hhhccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 9 VATNQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+.++++..|+.|+..+.|+|++ +.+++|+.|+.+++||+.+......+.+|...|+|..|+
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDIS 162 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccc
Confidence 4577888999999999999965 567888899999999999866555789999999998874
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.70 E-value=4.3e-08 Score=58.10 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=35.7
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~ 52 (69)
+.+|-+||.++.|+|||..-++|+.||+|++|.+..++.
T Consensus 263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 689999999999999999999999999999999977543
No 76
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.70 E-value=5e-08 Score=60.48 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=49.1
Q ss_pred hhccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCc-------cEEeccCCCcEEEEEeC
Q 035276 10 ATNQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQ-------PVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~-------~~~~~~h~~~i~~v~~s 69 (69)
......+|.++|++++|+| +...|++|+.|.+|.+|++..+.. ...+.+|...|..++|.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wH 140 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWH 140 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeec
Confidence 3455678999999999999 567789999999999999965322 35678999999999884
No 77
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.68 E-value=2.4e-07 Score=52.36 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=49.2
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
....|..++..+.|+|+++.+++++.|+.+++||+..++.+..+..|...|.++.|+
T Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~ 102 (289)
T cd00200 46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS 102 (289)
T ss_pred EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEc
Confidence 345677888899999999999999999999999999877777788888889988874
No 78
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.67 E-value=3.7e-08 Score=61.38 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=47.9
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec-cCCCcEEEEEe
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA-MHDAPIKTIRL 68 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~-~h~~~i~~v~~ 68 (69)
....+|..+|.-+.||||.++|++|+.|..+.+||+.+|.+...+. +|...+.+++|
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W 320 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW 320 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence 3456899999999999999999999999999999999988765553 35567777777
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.67 E-value=1e-07 Score=61.88 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=49.7
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~ 67 (69)
+.+|..-|..+-.++||+.+++++.|++|++||+....|+.++..|...|+++.
T Consensus 209 LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~ 262 (735)
T KOG0308|consen 209 LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ 262 (735)
T ss_pred eeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence 448999999999999999999999999999999998889999999999998765
No 80
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.67 E-value=7e-08 Score=59.18 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=53.1
Q ss_pred hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276 10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67 (69)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~ 67 (69)
-.+.+.+|+..|.+++|-|.|.+|++++.|.+|++||+.+|-+++.+.+|..+|+.++
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVR 242 (406)
T ss_pred HHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEE
Confidence 3566778999999999999999999999999999999999999999999999988775
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.63 E-value=6.2e-08 Score=64.92 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=51.0
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.-+|...|.+++|+|++.+|++++.|.+|.+||..+-+++..+.+|...|..+.|
T Consensus 125 l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~ 179 (942)
T KOG0973|consen 125 LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSW 179 (942)
T ss_pred EecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEE
Confidence 3469999999999999999999999999999999998888899999999988877
No 82
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.63 E-value=2.5e-07 Score=61.30 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=45.5
Q ss_pred ccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 12 NQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
....+|...|.+++|+| ++..|++|+.|++|++||+.++.++..+..+ ..|.++.|
T Consensus 569 ~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~ 625 (793)
T PLN00181 569 TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQF 625 (793)
T ss_pred EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEE
Confidence 34557999999999997 7889999999999999999987776666544 45677766
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=2.4e-07 Score=54.51 Aligned_cols=61 Identities=21% Similarity=0.388 Sum_probs=49.8
Q ss_pred hhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc-----cEEeccCCCcEEEEEe
Q 035276 8 AVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ-----PVIVAMHDAPIKTIRL 68 (69)
Q Consensus 8 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~-----~~~~~~h~~~i~~v~~ 68 (69)
.|--+.+.-|.+.|.+.+|+|+|+.+++|+.|++|++.-.+...+ -.++..|...|+.++|
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~f 144 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAF 144 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEE
Confidence 455566777899999999999999999999999999987764333 3457789999998877
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.62 E-value=2.5e-07 Score=59.49 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=50.8
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~ 67 (69)
...+|.+.|.+++|...+..+++|+.|+++++||..+|.|...+.+|..-|+++.
T Consensus 244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~ 298 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLT 298 (537)
T ss_pred eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEE
Confidence 3678999999999998888999999999999999999999999999999998875
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.62 E-value=1.6e-07 Score=60.34 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=49.0
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
+.+.+|..+|.++..+ +..+++|+.|++|++||+.+++++..+.+|..+|.++.+
T Consensus 325 ~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~ 379 (537)
T KOG0274|consen 325 NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIV 379 (537)
T ss_pred EEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEe
Confidence 3344599999999997 788999999999999999999999999999999998765
No 86
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=7.4e-08 Score=58.64 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=35.3
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
...+.+|...|.+++|+.||++|++++.|+.|++||+.+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D 117 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRD 117 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecch
Confidence 344568999999999999999999999999999999975
No 87
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1.7e-07 Score=62.87 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=53.3
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+.+|..-|..+.|.+.-.++++++.|++|+||+.++++++..+.||.-.|.|.+|.
T Consensus 88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 456899999999999999999999999999999999999999999999999998873
No 88
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.58 E-value=2.7e-07 Score=57.02 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=47.8
Q ss_pred CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC---CCccEEeccCCCcEEEEEeC
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS---GGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t---~~~~~~~~~h~~~i~~v~~s 69 (69)
..|.+-|.-+.|+.+-.+|++|+.||+++|||++. +..+..+.-|..+|+++.|+
T Consensus 299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~ 356 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH 356 (440)
T ss_pred eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence 46888899999999888999999999999999964 44567888899999999995
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.7e-07 Score=58.67 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=47.8
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc-CCCcEEEEEeC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM-HDAPIKTIRLL 69 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~-h~~~i~~v~~s 69 (69)
...|.++.|+++|++|+.|..+|.|++||....+.+..+.+ |...|.+++|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~ 269 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN 269 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc
Confidence 67799999999999999999999999999988778888877 99999999985
No 90
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=6.6e-08 Score=62.73 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=49.5
Q ss_pred CCCCCCCeEEEEECCC--CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 14 NPNKSIEVLCSTLKDD--GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~--~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
+.+|...|.+++|-+. ..+|++|+.|.++++||.++..|++++.+|..-|+.+.|
T Consensus 179 l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~f 235 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFF 235 (794)
T ss_pred eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEe
Confidence 4489999999999984 469999999999999999998999999999999988766
No 91
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.55 E-value=1.2e-07 Score=60.85 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=51.8
Q ss_pred hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+..-+...|.+-|+++.|++.+..+++|++|.+.++||-.. ..+..-..|..+|.+++|+
T Consensus 177 ~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~n 236 (737)
T KOG1524|consen 177 SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFN 236 (737)
T ss_pred cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccCChhccceeeeeec
Confidence 33445667999999999999999999999999999999765 6667777899999999985
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.55 E-value=1.5e-07 Score=60.08 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=41.6
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc---cEEeccCCC--cEEEEEeC
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHDA--PIKTIRLL 69 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~~--~i~~v~~s 69 (69)
..-++.+|+|++||+.+++|+.||.|++||...... ...-..|.. .|.|+.||
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 344678999999999999999999999999754221 222357877 89999997
No 93
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=3.9e-07 Score=54.86 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=48.4
Q ss_pred hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+++...|..|+++|+|.++ ..+++|+.|+.|+++|++++ ....+..|..+|+|+.++
T Consensus 46 ~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~-~~~~igth~~~i~ci~~~ 103 (323)
T KOG1036|consen 46 SLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG-NEDQIGTHDEGIRCIEYS 103 (323)
T ss_pred hhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCC-cceeeccCCCceEEEEee
Confidence 45667789999999999974 45889999999999999995 445677899999998763
No 94
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.54 E-value=5.1e-07 Score=59.88 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=45.6
Q ss_pred CCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 18 SIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 18 ~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
...+.+++|++ ++.+|++++.|++|++||+.++..+..+.+|...|.+++|+
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~ 584 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYS 584 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEc
Confidence 45678899988 47889999999999999999877778888999999999884
No 95
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.53 E-value=5e-07 Score=54.68 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=38.4
Q ss_pred ccCCCCCCCeEEEEECCCCCEE-EEecCCCcEEEEECCCC-CccEEeccC
Q 035276 12 NQNPNKSIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSG-GQPVIVAMH 59 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~-~~~~~~~~h 59 (69)
..+.+|...|+.+.|+|..+++ ++|+.|+.|++||+... .|...+..|
T Consensus 182 H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h 231 (397)
T KOG4283|consen 182 HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH 231 (397)
T ss_pred eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence 4567899999999999998875 88999999999999753 455544433
No 96
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.51 E-value=5.3e-07 Score=56.40 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=48.8
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc---cEEeccCCCcEEEEEeC
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~~~i~~v~~s 69 (69)
+..|..+|+-+.||++|++|++++.|.+.-+|++..... ..++.+|..+|.-+.||
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wS 278 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWS 278 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEEC
Confidence 446899999999999999999999999999999976444 35677999999999886
No 97
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=3.6e-07 Score=58.90 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=48.3
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEEe
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIRL 68 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~~ 68 (69)
+.+|++-|.++.|+.||.+|++|+.|..+.|||....+.+..+ .+|..-|-+++|
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKF 101 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKF 101 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEee
Confidence 4589999999999999999999999999999999875555444 689999999987
No 98
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=6e-08 Score=63.52 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=51.4
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+.+|+.+|.++.|+++-..|+.|..+|+|++||++.++.+..+.+|...+.++.|+
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~ 121 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH 121 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec
Confidence 56899999999999999999999999999999999988888999999999888874
No 99
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.49 E-value=5.1e-07 Score=60.74 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=47.6
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC-------CC-----------ccEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS-------GG-----------QPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t-------~~-----------~~~~~~~h~~~i~~v~~s 69 (69)
+...|.+.|.++.|+|||++|++|+.|+.|.+|+... |. +...+.+|...|..+.|+
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 4457999999999999999999999999999999872 11 244577899999998885
No 100
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.48 E-value=1.5e-07 Score=58.36 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=52.1
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+..-+|...+.+++|+||+.++++++.|..+++||+..|.....+.+|...++.++|
T Consensus 116 ~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 116 KKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAW 173 (434)
T ss_pred EEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeec
Confidence 3344568899999999999999999999999999999999888888999999998887
No 101
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.48 E-value=6.5e-07 Score=54.29 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=48.7
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
..+.|.+++.+++.+ +.++++|+.|-+|++||+....++..+-.|.+.|+++.|.
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~ 92 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFY 92 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEec
Confidence 345789999999985 8999999999999999999988888888899999999873
No 102
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.46 E-value=2.5e-07 Score=57.54 Aligned_cols=63 Identities=11% Similarity=0.146 Sum_probs=53.5
Q ss_pred hhhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 6 AAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 6 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.-+.....+.+..++|.++.|.++++++++++.|+.+++|++.......++.+|..+|.+++|
T Consensus 207 ~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~ 269 (459)
T KOG0288|consen 207 EKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKF 269 (459)
T ss_pred chhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehh
Confidence 333344455667788999999999999999999999999999987777889999999998876
No 103
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=1.3e-07 Score=57.88 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=50.8
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.|+..|.++.|+.|+..+++++.|.++++..+.+|+++.++.+|...|+.+.|+
T Consensus 304 AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 304 AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 689999999999999999999999999999999999999999999999888763
No 104
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=3.1e-07 Score=55.26 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=44.3
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
-.||.+++|+|--+.++||+.||.|.+||+...+.+..+.....-|..++|+
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFS 283 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEec
Confidence 3478899999999999999999999999999988887776666667777775
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.45 E-value=1.3e-07 Score=58.22 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=50.7
Q ss_pred ccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 12 NQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.++.+|...|.+++=.|.. ..+++|+.||.|++||+....+...+..|.+.|+.+.+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v 117 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICV 117 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEe
Confidence 3457899999999999977 67899999999999999998889999999999988765
No 106
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.45 E-value=7.6e-07 Score=56.11 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=47.1
Q ss_pred hhhhhccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCC-CccEEeccCCCcEEEEEe
Q 035276 7 AAVATNQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSG-GQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 7 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~-~~~~~~~~h~~~i~~v~~ 68 (69)
+.| ...+.+|+.-|.+.+|+|.. ..+++|+.|++|++||+.+. ..+.++ .|..+|..+-+
T Consensus 143 a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~ 204 (487)
T KOG0310|consen 143 AYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLA 204 (487)
T ss_pred cEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEE
Confidence 444 55788999999999999964 46799999999999999875 444555 58888877643
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=1.6e-06 Score=51.08 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=47.4
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
..|..++..|.|+.|++|..|..-.+||+..+..++.+..|...|+|++||
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs 282 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS 282 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC
Confidence 457889999999999999999999999999988889999999999999996
No 108
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=2.7e-07 Score=57.87 Aligned_cols=58 Identities=19% Similarity=0.368 Sum_probs=46.4
Q ss_pred hccCCCCCC--CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 11 TNQNPNKSI--EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 11 ~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+...+|.+ +|.+++.+-||+.|++|+.||++.+||+.+..+++.+....++|+-+++
T Consensus 268 ~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 268 INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 334456777 8999999999999999999999999999997787777645566655443
No 109
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.43 E-value=1.6e-06 Score=52.64 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=49.2
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCC-cEEEEECCCCCccEEecc--CCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDK-QVKTWPLLSGGQPVIVAM--HDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~-~v~iwd~~t~~~~~~~~~--h~~~i~~v~~s 69 (69)
..+..|...|.+++.+.+|+.|++++..| -|||||..+|..+.+++. ....|.+++||
T Consensus 175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 34567999999999999999999999887 579999999998888842 34668999886
No 110
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.43 E-value=1.6e-06 Score=51.85 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=52.0
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+.+|+.|+..+.|+.+|-.|.+|+-|.++.+|-...|+++-++.+|.+.|+|+..
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Di 60 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDI 60 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEe
Confidence 45789999999999999999999999999999998888999999999999999864
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.2e-06 Score=51.68 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=44.4
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
..+.|.++.|+++|.++++++.|.++++||..++++...+..+...+..+.|
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~F 64 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACF 64 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEE
Confidence 4667999999999999999999999999999999888887666666666655
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.42 E-value=1.3e-06 Score=54.80 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=44.0
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc-CCCcEEEEEe
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM-HDAPIKTIRL 68 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~-h~~~i~~v~~ 68 (69)
....++|+++|..++|+.+|-+|++++.|+.|++||++..+...++.- ...++.++.|
T Consensus 382 ~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~f 440 (506)
T KOG0289|consen 382 VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSF 440 (506)
T ss_pred cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEE
Confidence 345678999999999999999999999999999999987555444432 2234555544
No 113
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=1.7e-06 Score=52.42 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=46.6
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC----ccEEeccCCCcEEEEEe
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG----QPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~----~~~~~~~h~~~i~~v~~ 68 (69)
...+|..-|.++.|.+.|+++++|+.|++++|||...+. +-...+.|.+.|..+.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~W 67 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVW 67 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEe
Confidence 455788889999999999999999999999999975433 23456789999998887
No 114
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.42 E-value=7.9e-07 Score=54.24 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=49.6
Q ss_pred ccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEe---ccCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIV---AMHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~---~~h~~~i~~v~~s 69 (69)
+.+-+|...|..+.|.|+. ++|++++.|..|++|++++..|+..+ .+|...|.++.|+
T Consensus 129 ~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 129 KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 3455799999999999965 67899999999999999998887765 5799999998875
No 115
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=4.3e-07 Score=59.66 Aligned_cols=53 Identities=28% Similarity=0.410 Sum_probs=46.8
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
+|...+..+.|+|+|+++++++.|.++++||+..|+.+..+.+|..++..+.|
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~ 204 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEF 204 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccccccc
Confidence 36777888999999999999999999999999988888888889988887654
No 116
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.40 E-value=1.4e-06 Score=58.67 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=49.4
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE-EeccCCCcEEEEEe
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV-IVAMHDAPIKTIRL 68 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~-~~~~h~~~i~~v~~ 68 (69)
...+|.+.+.++.|+.||+++++.+.|.++++|++++++... ...+|..+|+.+.|
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~ 226 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF 226 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEe
Confidence 367899999999999999999999999999999999977665 55689999987765
No 117
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.40 E-value=1.3e-06 Score=54.06 Aligned_cols=57 Identities=18% Similarity=0.305 Sum_probs=44.3
Q ss_pred hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276 9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67 (69)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~ 67 (69)
+++..+.+|..+|.++.|++ ...++++++|-+|+.||+++++....+. ....+.++.
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~ 307 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCIS 307 (423)
T ss_pred CceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEee
Confidence 34556779999999999998 7789999999999999999987765553 233344443
No 118
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.39 E-value=1.7e-06 Score=51.59 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=50.4
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+-++.+..||..+.|+.||++|+++++|.-|-|=++++|.++..++ +..+-..|+|.
T Consensus 224 ~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWH 281 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWH 281 (313)
T ss_pred heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEec
Confidence 45566789999999999999999999999999999999999887775 77777788874
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=9.6e-07 Score=52.20 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=47.7
Q ss_pred ccCCCCCCCeEEEEECC--CCCEEEEecCCCcEEEEECCCCC--ccEEeccCCCcEEEEEe
Q 035276 12 NQNPNKSIEVLCSTLKD--DGITVFSGGCDKQVKTWPLLSGG--QPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~v~iwd~~t~~--~~~~~~~h~~~i~~v~~ 68 (69)
..+.+|.+||..++|-. .|+.|++++.|++|.+|.-+.+. +......|...|++++|
T Consensus 50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~w 110 (299)
T KOG1332|consen 50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAW 110 (299)
T ss_pred eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecc
Confidence 35668999999999988 89999999999999999977652 23456778999999887
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.38 E-value=9.8e-07 Score=54.01 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=53.2
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+.+.+|...|+.++-......+.+++.|.+.++|.+++|.|+..+.+|.+.|++++|+
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec
Confidence 45567899999999888777788899999999999999999999999999999999985
No 121
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.37 E-value=1.6e-06 Score=35.11 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=28.9
Q ss_pred CCCCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWP 46 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd 46 (69)
..|...|.++.|.++++.+++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35777899999999999999999999999996
No 122
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.36 E-value=1e-06 Score=58.33 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=46.8
Q ss_pred CCCCeEEEEECCCCCEEEEec--CCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 17 KSIEVLCSTLKDDGITVFSGG--CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~--~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+..++.+++|+++|+++++|- ....+++|++.......++..|...+.|++|+
T Consensus 77 sRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFs 131 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFS 131 (1080)
T ss_pred cCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeec
Confidence 456889999999999999964 56789999999877888899999999999986
No 123
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.35 E-value=6.7e-07 Score=56.49 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=39.0
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
+..+.+|.++|.++++.++|+++++.+.|..++|||+..-..+.++
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 4455689999999999999999999999999999999875554444
No 124
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.34 E-value=1.4e-06 Score=57.47 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=47.3
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+..+.+|...|.+++|+.||+.+++|+.|+.|.+|.-+-... .. ..|...|+|+.|+
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-Lk-YSH~D~IQCMsFN 102 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LK-YSHNDAIQCMSFN 102 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-ee-eccCCeeeEeecC
Confidence 445678999999999999999999999999999998655322 22 3699999999885
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.34 E-value=9.3e-07 Score=55.12 Aligned_cols=60 Identities=15% Similarity=0.020 Sum_probs=48.9
Q ss_pred hhccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCC--CCccEEeccCCCcEEEEEeC
Q 035276 10 ATNQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLS--GGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t--~~~~~~~~~h~~~i~~v~~s 69 (69)
.+.-..+|+..|.+++|.+.. ..+.+++.|+.+.+||+.+ .+......+|.++|.|++|+
T Consensus 219 p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 219 PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 345566899999999999955 4568899999999999994 33345668899999999986
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=5.9e-07 Score=53.09 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=46.8
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc---cEEeccCCCcEEEEEe
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHDAPIKTIRL 68 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~~~i~~v~~ 68 (69)
-...|..-|.++...--|++|++|+.|++|+|+++..... +.++.+|.+||+.++|
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~w 64 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAW 64 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEee
Confidence 3456777788877777899999999999999999976443 5678999999999987
No 127
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=9.8e-07 Score=59.84 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=56.8
Q ss_pred cchhhhhhccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 4 FGAAAVATNQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 4 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
++-+....+...+|...|+++.|++.+ ++|++++.|+.|.+|+.++++.+..+.....++..+.|+
T Consensus 239 lR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 239 LRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWC 305 (1049)
T ss_pred ccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeec
Confidence 344556666678999999999999965 788999999999999999999889998888889888884
No 128
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=2.8e-06 Score=54.49 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=45.1
Q ss_pred CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC---------c-cEEeccCCCcEEEEEeC
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG---------Q-PVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~---------~-~~~~~~h~~~i~~v~~s 69 (69)
-+|.+||++++..+.++++++|+-|++|+.|++.... . ...+.||...|+.+++|
T Consensus 341 raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s 405 (577)
T KOG0642|consen 341 RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS 405 (577)
T ss_pred ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec
Confidence 3799999999999999999999999999999664211 1 23567999999888775
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=2.5e-06 Score=57.13 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=38.7
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
..-+|.++|+++.|+|++++|++...||+|++||++++.+...+
T Consensus 133 ~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl 176 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTL 176 (933)
T ss_pred eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhc
Confidence 34579999999999999999999999999999999987765544
No 130
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.30 E-value=1.7e-06 Score=51.61 Aligned_cols=50 Identities=14% Similarity=0.305 Sum_probs=45.5
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.|..+..-||++.++++++|+.||+|..++...+..+.-|...|++++|+
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs 302 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS 302 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC
Confidence 35667889999999999999999999999988888888899999999996
No 131
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.28 E-value=2.3e-06 Score=56.06 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=47.8
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc----cEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ----PVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~----~~~~~~h~~~i~~v~~s 69 (69)
.+..|+-.|..++||||+++|++.+.|+++.+|....... ....+.|..-|+.+.|+
T Consensus 567 ~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~ 627 (764)
T KOG1063|consen 567 ELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWS 627 (764)
T ss_pred eecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccC
Confidence 3678999999999999999999999999999999854322 23367899999998885
No 132
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.28 E-value=6.6e-07 Score=54.74 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=49.0
Q ss_pred hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEE
Q 035276 9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIK 64 (69)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~ 64 (69)
|.+..+.+|.++|..+.|-..|+.++++++|.+..+||+++|+.+..+.+|.....
T Consensus 263 vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt 318 (481)
T KOG0300|consen 263 VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT 318 (481)
T ss_pred eeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence 44556678999999999999999999999999999999999988888888876654
No 133
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.27 E-value=4.9e-06 Score=51.28 Aligned_cols=57 Identities=7% Similarity=0.074 Sum_probs=45.9
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCC-cEEEEECCCCCccEEeccCC--CcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDK-QVKTWPLLSGGQPVIVAMHD--APIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~-~v~iwd~~t~~~~~~~~~h~--~~i~~v~~s 69 (69)
.+..|.+++-+++|+++|..|++++..| .||++.+.+|.++++++.-. ..|.+++|+
T Consensus 168 ~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 168 TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 3447999999999999999999999887 57999999998888885433 335566664
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.27 E-value=1.6e-06 Score=57.30 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=47.5
Q ss_pred CCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 15 PNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
..|+..+.+++|++. ..+|++|+.|++|++||+...+....+.+....|+.|+|+
T Consensus 130 ~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 130 NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence 368999999999994 5678999999999999998866677777888889999885
No 135
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.27 E-value=3.7e-06 Score=51.14 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=49.9
Q ss_pred hccCCCCCCCeEEEEECCCCC--EEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 11 TNQNPNKSIEVLCSTLKDDGI--TVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
+..+..|.+.|.++.|++... +|++|+.||.|.+|++.+-.++..+++|...|+.++.
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsi 135 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSI 135 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEe
Confidence 334456899999999999876 8999999999999999988888899999999987754
No 136
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.25 E-value=1.4e-06 Score=54.29 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=49.8
Q ss_pred ccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
..+.+|...|-.++|.|.. +.|++++.|.+|.+||+.+|+.+..+. |..-|.++.||
T Consensus 125 v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn 182 (472)
T KOG0303|consen 125 VELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFN 182 (472)
T ss_pred EEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEec
Confidence 3455899999999999975 567999999999999999998888887 99999999986
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.25 E-value=7e-06 Score=47.69 Aligned_cols=51 Identities=8% Similarity=-0.019 Sum_probs=40.1
Q ss_pred CCCeEEEEECCCCCEEEEe-cCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 18 SIEVLCSTLKDDGITVFSG-GCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~-~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
...+.+++|+|++++|+++ ..++.|.+||+.+++++..+.. ....+.++++
T Consensus 248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~ 299 (300)
T TIGR03866 248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVR 299 (300)
T ss_pred CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeC
Confidence 3467889999999999876 5689999999999887777764 3555777664
No 138
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.23 E-value=1e-05 Score=46.07 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=36.4
Q ss_pred CCCeEEEEECCCCCEEEEecC---CCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 18 SIEVLCSTLKDDGITVFSGGC---DKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~---d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
...+..+.|+|+|++|+.++. .|.+.+||+.+.+.+... .|. .+..+.||
T Consensus 100 ~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~~-~~t~~~Ws 152 (194)
T PF08662_consen 100 TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-EHS-DATDVEWS 152 (194)
T ss_pred CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-ccC-cEEEEEEc
Confidence 446678999999999998764 467999999975555444 233 35677775
No 139
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=1.9e-06 Score=53.48 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=42.0
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 22 LCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
..++|+.+|+.|++++.||++|+|+......+.....|.+.|.++.||
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS 195 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS 195 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeC
Confidence 778999999999999999999999987756666677888889998886
No 140
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.21 E-value=3.9e-06 Score=49.98 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=45.6
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEEeC
Q 035276 19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIRLL 69 (69)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~~s 69 (69)
..|.+..+.|+...+++|+.|..+..||..+|..+..+ ++|..+|.|++|+
T Consensus 225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS 276 (334)
T ss_pred cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC
Confidence 34677889999999999999999999999999888775 8999999999996
No 141
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.21 E-value=3.5e-06 Score=51.48 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=46.0
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC------------C------CccEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS------------G------GQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t------------~------~~~~~~~~h~~~i~~v~~s 69 (69)
-+..|..++...+|++||.++++|+.|..|++.|++. + ..++++..|..+|+++.|.
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 3446899999999999999999999999999999971 1 1245677788888888763
No 142
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.20 E-value=9.3e-07 Score=57.98 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=50.0
Q ss_pred cCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
-+..|...|.++.|.|- ...|++++.|-+|++||+.+++....+.+|...|..++||
T Consensus 672 ~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWS 729 (1012)
T KOG1445|consen 672 ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWS 729 (1012)
T ss_pred eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEEC
Confidence 44578888999999994 5678999999999999999977777889999999999997
No 143
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.20 E-value=4.2e-06 Score=55.45 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=50.9
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
+....|...|+++.|.|+...+.+++-|+.|+.||-+.=++++.+.+|...|+|++-
T Consensus 586 KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav 642 (888)
T KOG0306|consen 586 KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAV 642 (888)
T ss_pred hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEE
Confidence 345579999999999999999999999999999998877788999999999999864
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=6e-06 Score=53.94 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=35.0
Q ss_pred CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV 54 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~ 54 (69)
....+++++++|+|++.+|+.|+.||.|++||+.++....
T Consensus 151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence 3457899999999999999999999999999999876544
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=4.8e-06 Score=56.67 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=48.2
Q ss_pred hhhccCCCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCCccEEec--cCCCcEEEEEeC
Q 035276 9 VATNQNPNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQPVIVA--MHDAPIKTIRLL 69 (69)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~~~~~--~h~~~i~~v~~s 69 (69)
..+.+...|.++|+.+.|++.+. .|++|+.||.|.|||++..+...... .-...|.+++|+
T Consensus 107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWN 170 (1049)
T KOG0307|consen 107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWN 170 (1049)
T ss_pred HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccc
Confidence 34566778999999999999766 89999999999999998755544442 245678888885
No 146
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.15 E-value=1.9e-06 Score=57.78 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=54.2
Q ss_pred hhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 8 AVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 8 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
+.+.+.+-+|-..|.|+.|...|.++++|+.|..++||..+++.++....||...|+.++-
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlav 240 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAV 240 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhcc
Confidence 3456667789999999999999999999999999999999999999999999999887653
No 147
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.13 E-value=8.6e-06 Score=53.93 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=44.1
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.|.+++|-|||+.|+.+..+ .+.+||.+.|..+.++++|..-|.|++|+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys 62 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYA 62 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEc
Confidence 68899999999998776655 58999999999999999999999999986
No 148
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.12 E-value=1.2e-05 Score=52.90 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=45.5
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~ 67 (69)
++...+|+.-|..+++-+++. +++|+.||.|+.||+ +|+++....+|...|.++.
T Consensus 172 l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 172 LKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred hhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEE
Confidence 455667999999999987665 678899999999998 6688888889998888775
No 149
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.12 E-value=3.8e-06 Score=51.90 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=41.3
Q ss_pred CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEEeC
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIRLL 69 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~~s 69 (69)
.+|...|++++|+|-|+-+++|+.|++|+||.+..+..-..+ ..--..|.|++||
T Consensus 269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S 324 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYS 324 (433)
T ss_pred cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEe
Confidence 368889999999999999999999999999999875432222 1122446666664
No 150
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.11 E-value=1.2e-05 Score=53.58 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=51.8
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+...|.+.+..+...|.|.+|++.+.|+++.++|..+|+|+....+|...|..++|.
T Consensus 636 gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 636 GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 344677888899999999999999999999999999999998889999999999884
No 151
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=8e-06 Score=48.55 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=37.3
Q ss_pred hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
.++...+|+.-|.++.--.-...+++|++||++|+||+.++++...+
T Consensus 148 i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 148 IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEe
Confidence 34556689999999877445556889999999999999998876554
No 152
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=8.8e-06 Score=54.15 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=48.4
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
-+.+..|..+|.+++|+++|.+|++|+..+.+.+|.+.+++ .+.++.-..+|..+.+|
T Consensus 244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS 301 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS 301 (792)
T ss_pred ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc
Confidence 44566799999999999999999999999999999999966 45566667777776654
No 153
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.08 E-value=4.1e-05 Score=44.87 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=49.4
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecC-CCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGC-DKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.....|...|..++|+|++..++.++. |+.+++|++..+.....+.+|...|.+++|+
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 207 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc
Confidence 345578888999999999998888875 9999999999867777788899999998874
No 154
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.08 E-value=2.1e-06 Score=55.02 Aligned_cols=43 Identities=28% Similarity=0.549 Sum_probs=39.4
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP 53 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~ 53 (69)
.++.++|...+.++..++||..|.+|+.|.+||.||+..+.++
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence 4678899999999999999999999999999999999987654
No 155
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=6.7e-06 Score=50.36 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=33.8
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLL 48 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~ 48 (69)
++.+|...|+.++|+++++.+++.+-||+.++||+.
T Consensus 273 ~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 273 SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 567899999999999999999999999999999985
No 156
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.05 E-value=2.3e-05 Score=50.38 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=43.4
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
....+.+++.+|||..++++ .+.|++||+++.+.+..+.+|..+|+++.|
T Consensus 143 ~~~~~~sl~is~D~~~l~~a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTA--SRQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred CCCccceEEEcCCCCEEEec--cceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 34456788999999998877 567999999998888999999999999987
No 157
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.04 E-value=2e-05 Score=47.79 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=50.8
Q ss_pred hhhhhccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCc---cEEeccCCCcEEEEEeC
Q 035276 7 AAVATNQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 7 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~~~i~~v~~s 69 (69)
+.++.+.+..+..|+.+..|+. |.+++.+++.|.+-.+||++++.. ...+-.|.+.|..++|.
T Consensus 139 ~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~ 205 (364)
T KOG0290|consen 139 SVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFL 205 (364)
T ss_pred hhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEec
Confidence 3444555667788999999999 678899999999999999998633 34456899999999984
No 158
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.02 E-value=9.9e-06 Score=52.06 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=42.8
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
...++.+||.+...+++.||.|.|||+.....++.+++|...+.|+..+
T Consensus 512 CyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred hhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 3457899999999999999999999998867778899999999988653
No 159
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.01 E-value=3.5e-06 Score=54.40 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=45.8
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+....|.+.+++-.|+|||.-|+++++||.|++|. .+|-..-.+.....+|+|++|
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 345567899999999999999999999999999998 454333345567788999988
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.01 E-value=1.3e-05 Score=52.81 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=38.7
Q ss_pred hhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276 8 AVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 8 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~ 52 (69)
+.....+.+|.+.|++++|+|||+.+++-+-|+++++|+-.+++.
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 344556779999999999999999999999999999999876543
No 161
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.00 E-value=6.9e-06 Score=52.86 Aligned_cols=53 Identities=6% Similarity=-0.086 Sum_probs=44.0
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
..+.|...+|+|||++|++-+.|+.+||+|..+.+.+...+..-....|+.||
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 35578889999999999999999999999998855555556677778888886
No 162
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.00 E-value=2.3e-06 Score=57.37 Aligned_cols=60 Identities=13% Similarity=0.258 Sum_probs=54.3
Q ss_pred hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
-+....+|++.+.+++.+.....+++++.|..|++|-+.++..+..+.+|.+.|..++|+
T Consensus 224 ~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafs 283 (1113)
T KOG0644|consen 224 CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFS 283 (1113)
T ss_pred hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccC
Confidence 345567899999999999999999999999999999999988888899999999999986
No 163
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=1.4e-05 Score=50.44 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=48.2
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
-.++|.+++-+|+|.+|+.|...+.+.+|.+.+|..+..+.+|=..|+|++|+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs 132 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS 132 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe
Confidence 36778999999999999988899999999999998888888999999999985
No 164
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=9.1e-06 Score=50.51 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=38.1
Q ss_pred hhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE
Q 035276 8 AVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV 54 (69)
Q Consensus 8 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~ 54 (69)
+.....+..|..+|.++.|+|||+.|++-+.| ..++||+++|.++.
T Consensus 176 ~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 176 MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence 33444566789999999999999999999999 79999999985543
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.97 E-value=1.6e-05 Score=49.65 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=45.5
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECC--------C-----CC---ccEEeccCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLL--------S-----GG---QPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~--------t-----~~---~~~~~~~h~~~i~~v~~s 69 (69)
..+..|...|..+.|+|+|..|++|+.++.|.+|... + .+ ....+.+|...|..++|+
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws 132 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS 132 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc
Confidence 3456799999999999999999999999999999876 2 00 123456788888777774
No 166
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.97 E-value=1.9e-05 Score=48.36 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=47.4
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec-cCC-CcEEEEEe
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA-MHD-APIKTIRL 68 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~-~h~-~~i~~v~~ 68 (69)
-+....|++.|.++.+++.++.-++++.||.|++||=.+++|+.++. .|. ..|.+..|
T Consensus 254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE
Confidence 34556799999999999999999999999999999998888987763 564 44666655
No 167
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.96 E-value=4.3e-05 Score=50.18 Aligned_cols=53 Identities=13% Similarity=0.332 Sum_probs=48.8
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
++..+|.+++-++.|..+++|+..+.+++||-.+.+++..+.+|..-|+++..
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~ 221 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV 221 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEE
Confidence 77888999999999999999999999999999999999999999999988754
No 168
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.95 E-value=3.8e-05 Score=46.60 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=43.1
Q ss_pred hccCCCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCCccEEe---ccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQPVIV---AMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~~~~---~~h~~~i~~v~~s 69 (69)
.+++-.|..+|.+++|..++. .+++.+.||.+|++|+...+....+ .....+..+++|+
T Consensus 189 kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 189 KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 557778999999999999775 5689999999999999875443322 2223445555553
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=3.3e-05 Score=46.00 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=42.4
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276 20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~ 67 (69)
+|..+-..|..+.++.++.|+.+..||+++|+..+.+++|...|.++.
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 467788898888888888999999999999887789999999998875
No 170
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.93 E-value=1.5e-05 Score=52.09 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=47.4
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEE--eccCCCcEEEEEe
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI--VAMHDAPIKTIRL 68 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~--~~~h~~~i~~v~~ 68 (69)
.....|...|+++.|-|....|++++.|.+++.||+++.++... +.+|..-+.+++|
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf 152 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECF 152 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhh
Confidence 44557999999999999667889999999999999998766544 6789888877765
No 171
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.93 E-value=3.2e-05 Score=50.95 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=49.5
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCC-----cEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDK-----QVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~-----~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+-+|..+|.+++.+|+++.+++++... .|++|++.+-...+.+.+|+..|..++||
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 347999999999999999999987654 79999998877778899999999999997
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.93 E-value=2.3e-05 Score=48.01 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=35.1
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
....+|...|+++.|+++|.++++++-|.++++|++..
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 35678999999999999999999999999999999984
No 173
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.91 E-value=9.1e-05 Score=42.17 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=36.7
Q ss_pred CCCCeEEEEECCCCCEEEE--ecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 17 KSIEVLCSTLKDDGITVFS--GGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s--~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
..++|.+++|+|+|+.++. |..+..|.+||++ ++.+..+. ...+..+.||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~ws 109 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWS 109 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEEC
Confidence 3457999999999998644 4467799999997 35555553 4556777775
No 174
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.91 E-value=6e-05 Score=48.51 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=45.0
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc-cEEeccCCCcEEEEEe
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ-PVIVAMHDAPIKTIRL 68 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~-~~~~~~h~~~i~~v~~ 68 (69)
.+.|...++|+++|.+|+.|...|.|..||+..-+. +..+..|...|.+++|
T Consensus 249 y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 249 YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 456788899999999999999999999999986444 4567789999999998
No 175
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=8.7e-05 Score=46.17 Aligned_cols=56 Identities=13% Similarity=0.242 Sum_probs=40.8
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEec-CCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGG-CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
+-++| .+|.+++|++||..+++++ .|..|.+||..++.+.....--...+.-++||
T Consensus 191 ~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS 247 (445)
T KOG2139|consen 191 QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS 247 (445)
T ss_pred eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence 34455 6899999999999999987 57799999999976644333334445555654
No 176
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=97.87 E-value=2.6e-05 Score=51.34 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=40.4
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
..+|..+|+.++.-|++ .+++|+.|++|++|.- ++++.++.+|...|+.+++
T Consensus 136 l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v 187 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV 187 (745)
T ss_pred cCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEE
Confidence 56788888888877777 5778888888888864 4667788888888877653
No 177
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.83 E-value=2e-05 Score=49.74 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=47.8
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEE
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v 66 (69)
+...+|.+.|.+++|-.....|++++.|+++++|+++....+.++.+|...|..+
T Consensus 238 ~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 238 KVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred hcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 3457899999999999988899999999999999998766677888998888765
No 178
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=7.1e-05 Score=45.63 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=43.9
Q ss_pred ccCCCCCCCeEEEEECCC-CC---EEEEecCCCcEEEEECCCCC--------------------ccEEeccCCCcEEEEE
Q 035276 12 NQNPNKSIEVLCSTLKDD-GI---TVFSGGCDKQVKTWPLLSGG--------------------QPVIVAMHDAPIKTIR 67 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~-~~---~l~s~~~d~~v~iwd~~t~~--------------------~~~~~~~h~~~i~~v~ 67 (69)
..+++|..+|.+++|.|+ |+ .|++++-|| |+||.+.... .+..+..|..+|+++.
T Consensus 217 a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~ 295 (361)
T KOG2445|consen 217 AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR 295 (361)
T ss_pred hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE
Confidence 345589999999999996 33 478999999 9999997311 1223678999999999
Q ss_pred eC
Q 035276 68 LL 69 (69)
Q Consensus 68 ~s 69 (69)
|+
T Consensus 296 wN 297 (361)
T KOG2445|consen 296 WN 297 (361)
T ss_pred Ee
Confidence 85
No 179
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.82 E-value=5.6e-05 Score=48.73 Aligned_cols=58 Identities=10% Similarity=0.235 Sum_probs=41.4
Q ss_pred ccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCc-cEEec-----cCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQ-PVIVA-----MHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~-~~~~~-----~h~~~i~~v~~s 69 (69)
....+|...+.+.+|.|+. +.+++++.|+++++||++..+. ...+. +-.-++..++|+
T Consensus 262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~n 326 (641)
T KOG0772|consen 262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWN 326 (641)
T ss_pred hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecC
Confidence 3445899999999999965 5789999999999999975332 23332 223445666765
No 180
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.78 E-value=0.00011 Score=49.59 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=50.7
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+...+.++.+++|+-+|+.++.|+.|-.|++-++.+......+.+|..+|.++.|+
T Consensus 91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD 147 (933)
T ss_pred eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Confidence 344557788999999999999999999999999999988889999999999999874
No 181
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.63 E-value=0.00062 Score=30.65 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=30.0
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~ 52 (69)
...+|..++|+|....|+.+..||.|.+|.+ ++++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456889999999999999999999999998 4443
No 182
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.62 E-value=0.00013 Score=46.29 Aligned_cols=54 Identities=11% Similarity=0.085 Sum_probs=42.1
Q ss_pred CCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCC--Cc--cEEeccCCCcEEEEEeC
Q 035276 16 NKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSG--GQ--PVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~--~~--~~~~~~h~~~i~~v~~s 69 (69)
-|...|.+++++|.. .++++++.|++.+|||+..- +. +.....|...|.++-||
T Consensus 320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 467789999999965 56899999999999999652 22 23345799999988876
No 183
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.60 E-value=0.00016 Score=44.12 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=36.1
Q ss_pred hhccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCc
Q 035276 10 ATNQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~ 52 (69)
...+..+|...|.++.|.| |...+.+++-|.++++||+++.+.
T Consensus 93 ~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~ 136 (397)
T KOG4283|consen 93 AKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE 136 (397)
T ss_pred cccCCccceeeeeeeEEeeecCceeecccccceEEEeeccccee
Confidence 4556668999999999999 667788899999999999998554
No 184
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00033 Score=46.01 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=39.7
Q ss_pred CCCCeE-EEEECCCCCEEEEecCCCcEEEEECCCCCccEE-eccCCCcEEEEEe
Q 035276 17 KSIEVL-CSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI-VAMHDAPIKTIRL 68 (69)
Q Consensus 17 ~~~~v~-~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~-~~~h~~~i~~v~~ 68 (69)
|..++. +++|.|||+.|+.|-.||+|++.|++++..+.. ......+|.++-|
T Consensus 60 p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w 113 (665)
T KOG4640|consen 60 PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIW 113 (665)
T ss_pred CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeec
Confidence 555566 899999999999999999999999999766543 2234455665555
No 185
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.00049 Score=47.60 Aligned_cols=53 Identities=21% Similarity=0.366 Sum_probs=43.5
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEE
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v 66 (69)
+....++|.+++|+.||+.++.|-.+|.|.+||...++.++.+..|..+...+
T Consensus 126 ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 126 NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred CCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 33457899999999999999999999999999998877777776666665544
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.00041 Score=42.79 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=41.3
Q ss_pred CCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCc---cEEeccCCCcEEEEEe
Q 035276 14 NPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHDAPIKTIRL 68 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~~~i~~v~~ 68 (69)
+..|..-|+.+.|.| +...|++|+.||-|.++|++.... +...-.|...|.++.|
T Consensus 161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw 219 (376)
T KOG1188|consen 161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGW 219 (376)
T ss_pred hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeee
Confidence 346889999999999 567899999999999999975332 2223346666776666
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.45 E-value=0.00056 Score=42.21 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=34.1
Q ss_pred EEECCCCCEEEEecCCCcEEEEECCC-CCccEEeccCCCcEEEEEe
Q 035276 24 STLKDDGITVFSGGCDKQVKTWPLLS-GGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 24 ~~~s~~~~~l~s~~~d~~v~iwd~~t-~~~~~~~~~h~~~i~~v~~ 68 (69)
....|++++|++|+.||.|++||+++ +.....+..|+.-++.+++
T Consensus 303 FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 303 FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 45678899999999999999999988 5544455556666665554
No 188
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.44 E-value=0.00083 Score=42.17 Aligned_cols=55 Identities=15% Similarity=0.035 Sum_probs=37.4
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEec---CCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGG---CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~---~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+..+...+...+|+|||+.|+..+ .+..|.+||+.++.. ..+..+...+...+|
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~ 253 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRF 253 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEE
Confidence 3456677899999999999887654 346899999988643 334334444444444
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=97.43 E-value=0.00014 Score=43.72 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLL 48 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~ 48 (69)
-|.+.|.+++|+||.+.++.++.|..|.+|++.
T Consensus 291 yHsagvn~vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 291 YHSAGVNAVAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred hhhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence 588899999999999999999999999999974
No 190
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.42 E-value=0.00077 Score=42.72 Aligned_cols=56 Identities=11% Similarity=0.001 Sum_probs=39.5
Q ss_pred cCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 13 QNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+.-|...|.++.|.|. .+.|++|+.|++|++.|.....+.-....-.+.|-.++|
T Consensus 281 s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 281 SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAW 337 (463)
T ss_pred ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEe
Confidence 34468899999999995 678899999999999999853332222223444555554
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.40 E-value=0.00058 Score=41.93 Aligned_cols=58 Identities=10% Similarity=0.175 Sum_probs=47.4
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc---cEEeccCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~~~i~~v~~s 69 (69)
..+..|...|..++|+|.+..|++|+.|..-.+|....+.. ...+..+.....+|.|+
T Consensus 49 htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws 109 (361)
T KOG1523|consen 49 HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS 109 (361)
T ss_pred eehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeec
Confidence 34556889999999999999999999999999999854433 34456788889999885
No 192
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.39 E-value=0.0012 Score=38.29 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=30.3
Q ss_pred eEEEEECCCCCEE-EEecCCCcEEEEECCCCCccEEeccC
Q 035276 21 VLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPVIVAMH 59 (69)
Q Consensus 21 v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~~~~~h 59 (69)
+..++|+|+++.+ +++..++.|++||+.+++....+..+
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 72 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG 72 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC
Confidence 5678999999987 56678899999999887665555433
No 193
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.37 E-value=0.0012 Score=41.12 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=29.5
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc
Q 035276 22 LCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM 58 (69)
Q Consensus 22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~ 58 (69)
..+.|+|||++++.++.|+.|.++|+.+++.+..+..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~ 76 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV 76 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec
Confidence 4578999999999999999999999999877666643
No 194
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.36 E-value=0.00039 Score=42.90 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=38.5
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEec-CCCcEEEEECCC-CCccEEeccCCC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGG-CDKQVKTWPLLS-GGQPVIVAMHDA 61 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~t-~~~~~~~~~h~~ 61 (69)
.+.+|.+.|..++|.+||++|++|. .|-+|-+||+.- +..+..+..|..
T Consensus 245 llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~ 295 (406)
T KOG2919|consen 245 LLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG 295 (406)
T ss_pred eecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc
Confidence 3458999999999999999999987 477899999965 344556666654
No 195
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.36 E-value=0.00033 Score=43.66 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=38.5
Q ss_pred hhhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 6 AAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 6 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
++.+....-.+|..-|..++..++ ..|++++.|+++++||+.+|+++..+
T Consensus 182 a~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 182 ATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred cccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence 344444455678888888888864 45899999999999999999876443
No 196
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.34 E-value=0.0013 Score=41.94 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=42.5
Q ss_pred CCCCCeEEEEECCCC--CEEEEecCCCcEEEEECCCCC----ccEEeccCCCcEEEEEeC
Q 035276 16 NKSIEVLCSTLKDDG--ITVFSGGCDKQVKTWPLLSGG----QPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~--~~l~s~~~d~~v~iwd~~t~~----~~~~~~~h~~~i~~v~~s 69 (69)
.+.++|.+++|.|.- +.+++|.-.|+|-+||+.+.+ ....+..|..+|.++.|+
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFS 243 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEec
Confidence 468899999999954 466778888999999995322 245667899999999885
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.00067 Score=42.95 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=43.8
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC------CCccEEec-cCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS------GGQPVIVA-MHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t------~~~~~~~~-~h~~~i~~v~~s 69 (69)
..-+|.+-|..+.|+.++++|++|+.|..+++|.+.. .+.+.... .|..-|-|++|+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~ 114 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD 114 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc
Confidence 3446899999999999999999999999999999852 22333332 355778888874
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.31 E-value=0.001 Score=41.80 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=30.0
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCC---CcEEEEECCCCC
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCD---KQVKTWPLLSGG 51 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d---~~v~iwd~~t~~ 51 (69)
+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~ 239 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA 239 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc
Confidence 44566778999999999999876543 469999998864
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.28 E-value=0.00044 Score=43.40 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=39.2
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEECC--CCCccEEeccCCCcEEEEEeC
Q 035276 22 LCSTLKDDGITVFSGGCDKQVKTWPLL--SGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~--t~~~~~~~~~h~~~i~~v~~s 69 (69)
..+.|+|||+.|+.++.++...+|++. +|.....+.+|...+...+||
T Consensus 375 ~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 375 ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 456899999999999989988888863 567778888888878888875
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.28 E-value=0.00071 Score=44.18 Aligned_cols=58 Identities=9% Similarity=-0.064 Sum_probs=45.9
Q ss_pred ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECC-CCCccEEeccCCCcEEEEEeC
Q 035276 12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLL-SGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~-t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+...|.++|..+.++|-+..+...+.|.++++|.-. ....+..+..+...+.+++||
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWS 450 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWS 450 (555)
T ss_pred ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEc
Confidence 3455789999999999998877666669999999987 444455667788889999997
No 201
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.27 E-value=7.7e-05 Score=48.04 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=38.5
Q ss_pred EEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 23 CSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 23 ~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
|++....+.++++|+..+.|+|||++...+.+.+++|...|.++-++
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN 130 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN 130 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec
Confidence 34445556889999999999999999756678889999999998764
No 202
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.24 E-value=0.0046 Score=36.24 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=42.0
Q ss_pred CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec--cCCCcEEEEEe
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA--MHDAPIKTIRL 68 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~--~h~~~i~~v~~ 68 (69)
..|..++.++.|.|++..+++++.|+.+++||..+........ .|...+..+.|
T Consensus 281 ~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336 (466)
T ss_pred ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE
Confidence 4567889999999999988888889889999998866554444 67766666654
No 203
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.20 E-value=0.0018 Score=39.48 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=39.9
Q ss_pred CCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCC-CCccEEeccCCCcEEEEEe
Q 035276 14 NPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLS-GGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t-~~~~~~~~~h~~~i~~v~~ 68 (69)
+..|...|.++.-+| ++.++++|+.|-.|++||+.. ++.+.. ..-.+.|+++++
T Consensus 206 ~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-~~v~GGVWRi~~ 261 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-AKVGGGVWRIKH 261 (339)
T ss_pred ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-CccccceEEEEe
Confidence 456888888887777 678999999999999999974 444332 234467777765
No 204
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.20 E-value=0.002 Score=41.92 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=30.6
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG 50 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~ 50 (69)
....+.+++++|+...++.|+.||.|.+||...+
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~ 291 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG 291 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCC
Confidence 4667899999999999999999999999998764
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.19 E-value=0.0026 Score=41.69 Aligned_cols=51 Identities=24% Similarity=0.381 Sum_probs=38.6
Q ss_pred CCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCc--cE----EeccCCCcEEEEEe
Q 035276 18 SIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQ--PV----IVAMHDAPIKTIRL 68 (69)
Q Consensus 18 ~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~--~~----~~~~h~~~i~~v~~ 68 (69)
..+|.++.|+|. ...++.|+.+|.|.+||+..+.. .. ....|..++..+.|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 567899999995 55677888999999999986543 21 23468888887776
No 206
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0019 Score=39.37 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=41.9
Q ss_pred cCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCC-CCccEE-eccCCCcEEEEE
Q 035276 13 QNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLS-GGQPVI-VAMHDAPIKTIR 67 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t-~~~~~~-~~~h~~~i~~v~ 67 (69)
.+..|..+.+.+.|+.. .+.+++|+.|+.+..||+.. ++.+.. .+.|...|.++.
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY 217 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe
Confidence 56689999999999984 56889999999999999983 333322 455777776664
No 207
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00063 Score=42.87 Aligned_cols=55 Identities=7% Similarity=-0.139 Sum_probs=45.1
Q ss_pred cCCCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 13 QNPNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.++.+..-|.+++|+|..+ .+..++.+.+|++.|+++..+...+..| ..++++.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~w 243 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCW 243 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeee
Confidence 4567778899999999776 7888999999999999996666666556 77888877
No 208
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.10 E-value=0.0032 Score=39.58 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=29.4
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCC---CcEEEEECCCCCc
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCD---KQVKTWPLLSGGQ 52 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d---~~v~iwd~~t~~~ 52 (69)
+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++.
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~ 232 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR 232 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE
Confidence 34566678889999999998765532 4599999988654
No 209
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.08 E-value=0.0054 Score=39.90 Aligned_cols=52 Identities=15% Similarity=0.262 Sum_probs=40.6
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEE-e-ccCCCcEEEEEeC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI-V-AMHDAPIKTIRLL 69 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~-~-~~h~~~i~~v~~s 69 (69)
..++..++|+|+|.+|+.|+.|+.|.+|.+........ + .-|..+|..+.||
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence 66788899999999999999999999999976544332 2 2244778887775
No 210
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.0044 Score=41.13 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=43.4
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
....|-.++|+ ++..|.+.+.+|.|.-||+.++++.+.+......|++++.
T Consensus 68 ~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai 118 (691)
T KOG2048|consen 68 EDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAI 118 (691)
T ss_pred CCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEe
Confidence 45568899999 5666889999999999999999888888888888988864
No 211
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.04 E-value=0.0016 Score=40.43 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=44.4
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc-cEEeccCCCcEEEE
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ-PVIVAMHDAPIKTI 66 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~-~~~~~~h~~~i~~v 66 (69)
.....+|.+++.+++|.+..+.|.+|..|..+.+||+.-.+- ..++.+|...|+.+
T Consensus 190 i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 190 ITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL 246 (404)
T ss_pred EEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence 345668999999999999999999999999999999965332 34567787766543
No 212
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.0023 Score=40.95 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=34.2
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
.+.|.+++|+.|++.|+.++.+|.|.+||+....++..+
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 567888999999999999999999999999987776554
No 213
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.00075 Score=43.38 Aligned_cols=51 Identities=22% Similarity=0.213 Sum_probs=41.7
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEE-eccCCCcE
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI-VAMHDAPI 63 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~-~~~h~~~i 63 (69)
.+..|.+.|..+-|+..|..|++++.|..|.+||...+..... ..+|..-|
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~Nv 188 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNV 188 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccch
Confidence 3457899999999999999999999999999999988665433 35676544
No 214
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.00 E-value=0.0035 Score=38.72 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=28.8
Q ss_pred CCCCCCeEEEEECCCCCEEEEecCC---CcEEEEECCCCCc
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGGCD---KQVKTWPLLSGGQ 52 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~~d---~~v~iwd~~t~~~ 52 (69)
..+...+...+|+|||++|+....+ ..|.+||+.+++.
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~ 226 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR 226 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 3455568889999999998776543 4799999988643
No 215
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.0057 Score=39.24 Aligned_cols=53 Identities=8% Similarity=0.142 Sum_probs=39.0
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC--CccEEeccCCCcEEEEEe
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG--GQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~--~~~~~~~~h~~~i~~v~~ 68 (69)
...++|.++.|.|....|++++.|+++++|.+... ..++.+.=-..+|.++.|
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f 265 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEF 265 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeee
Confidence 34667999999999999999999999999998532 223443334566666555
No 216
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.88 E-value=0.0067 Score=37.18 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=46.4
Q ss_pred hhhccCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCC-----------------------------ccEEecc
Q 035276 9 VATNQNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGG-----------------------------QPVIVAM 58 (69)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~-----------------------------~~~~~~~ 58 (69)
.+....++|+..|.++.|+|. .+.|++++.|..|.+|-..+-. .+..+..
T Consensus 249 ~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde 328 (370)
T KOG1007|consen 249 FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE 328 (370)
T ss_pred ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc
Confidence 345677899999999999995 5677999999999998764311 1234567
Q ss_pred CCCcEEEEEeC
Q 035276 59 HDAPIKTIRLL 69 (69)
Q Consensus 59 h~~~i~~v~~s 69 (69)
|...|.+++||
T Consensus 329 hEDSVY~~aWS 339 (370)
T KOG1007|consen 329 HEDSVYALAWS 339 (370)
T ss_pred cccceEEEeec
Confidence 88888888886
No 217
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.88 E-value=0.0022 Score=40.17 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=42.8
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEE
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIR 67 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~ 67 (69)
.+.+|-.-+++++|+||+++|+++-.|.+|++-....--.+..+ -||...|..++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence 45578888999999999999999999999999776442333333 47888887764
No 218
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.84 E-value=0.0048 Score=37.26 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=33.6
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
....|..+..||||+.|++.+.+|.|.+|++.+-......
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 3556889999999999999999999999999875554444
No 219
>PRK04922 tolB translocation protein TolB; Provisional
Probab=96.81 E-value=0.0041 Score=39.12 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=29.5
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecC---CCcEEEEECCCCCc
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGC---DKQVKTWPLLSGGQ 52 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~---d~~v~iwd~~t~~~ 52 (69)
+..+...+...+|+|||+.|+..+. +..|.+||+.+++.
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~ 240 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR 240 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE
Confidence 3445667888999999999887653 34699999987654
No 220
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.80 E-value=0.007 Score=36.81 Aligned_cols=49 Identities=8% Similarity=0.125 Sum_probs=38.5
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEECCCCCcc-EE----eccCCCcEEEEEeC
Q 035276 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP-VI----VAMHDAPIKTIRLL 69 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~-~~----~~~h~~~i~~v~~s 69 (69)
-.+..|+.....++++..|+++.|||+.....+ .. -+.|.+.++.++|+
T Consensus 206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFS 259 (344)
T ss_pred ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEec
Confidence 367789999999999999999999999753322 21 24688899999886
No 221
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.79 E-value=0.011 Score=35.76 Aligned_cols=34 Identities=6% Similarity=0.113 Sum_probs=28.3
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 22 LCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
..++||||+..|+.+...|+|+++|+.. ..+..+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 4689999999999999999999999975 343333
No 222
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.78 E-value=0.0052 Score=39.97 Aligned_cols=59 Identities=14% Similarity=0.302 Sum_probs=46.9
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCC--------cEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDK--------QVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~--------~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.++..+|+..|.+++..||...+++|-..+ .+++||..+..-+..+..-...|.+++||
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFs 163 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFS 163 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeec
Confidence 456778999999999999998888754333 58999988766666776677888999886
No 223
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=0.0034 Score=40.90 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=37.5
Q ss_pred hhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 035276 8 AVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG 50 (69)
Q Consensus 8 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~ 50 (69)
.|-...+.+|...++.+++++....|++++.|++++.|+....
T Consensus 386 ~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 386 SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred chhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence 3556678899999999999999999999999999999997653
No 224
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.71 E-value=0.0096 Score=36.77 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=44.6
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC---ccEEeccCCCcEEEEEeC
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG---QPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~---~~~~~~~h~~~i~~v~~s 69 (69)
...+|.+-+|++|++.++.+.....+.||.....+ ...++..|...|..+.|+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa 64 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA 64 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeec
Confidence 45689999999999999999999999999986544 345678899999999884
No 225
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.59 E-value=0.021 Score=35.83 Aligned_cols=54 Identities=6% Similarity=0.057 Sum_probs=40.2
Q ss_pred CCCCCeEEEEECCCCCEEEEe-c-CCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 16 NKSIEVLCSTLKDDGITVFSG-G-CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~-~-~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+...+..+++++.+.+|+-- + ..|.|.+||+.+-.....+..|...+.+++||
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs 182 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS 182 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC
Confidence 344445555566566687643 2 46899999999877778888999999999986
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.57 E-value=0.0029 Score=44.58 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=30.8
Q ss_pred hccCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCC
Q 035276 11 TNQNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t 49 (69)
..++..|+..+..++-+++ +.++++|+.||+|++||+..
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k 1080 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK 1080 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehh
Confidence 3455567777778777765 48999999999999999864
No 227
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=96.54 E-value=0.01 Score=36.86 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=29.4
Q ss_pred CCCCCCCeEEEEECC--CCCEEEEecCCCcEEEEECCCCCc
Q 035276 14 NPNKSIEVLCSTLKD--DGITVFSGGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~--~~~~l~s~~~d~~v~iwd~~t~~~ 52 (69)
..++...+..+.|.. ....+++|+.||+|++||+.+..+
T Consensus 66 fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e 106 (376)
T KOG1188|consen 66 FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE 106 (376)
T ss_pred ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh
Confidence 345566666778877 345689999999999999987544
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.0077 Score=37.89 Aligned_cols=40 Identities=10% Similarity=-0.032 Sum_probs=34.4
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP 53 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~ 53 (69)
..+-.+.+.++...|..++|++++.|..+||+|+++.+.+
T Consensus 286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 3456788999999999999999999999999999995443
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=96.50 E-value=0.0075 Score=38.06 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=35.4
Q ss_pred EEEEECCCCCEEEEecCCCc---EEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 22 LCSTLKDDGITVFSGGCDKQ---VKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 22 ~~~~~s~~~~~l~s~~~d~~---v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
....|+|||+.|+.++.++. +.++++ +|+....+.+|...+...+|+
T Consensus 377 ~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Ws 426 (429)
T PRK03629 377 ETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWS 426 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccC
Confidence 35689999999988877664 666776 456667777788888888775
No 230
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=96.50 E-value=0.017 Score=24.30 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=20.0
Q ss_pred CCCCCCCeEEEEECCCCCEEEE-ecCC--CcEEEE
Q 035276 14 NPNKSIEVLCSTLKDDGITVFS-GGCD--KQVKTW 45 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s-~~~d--~~v~iw 45 (69)
+......-....|+|||+.|+- +..+ +...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3344555677899999998754 4455 666665
No 231
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.49 E-value=0.018 Score=36.02 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=28.4
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCC---CcEEEEECCCCCc
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCD---KQVKTWPLLSGGQ 52 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d---~~v~iwd~~t~~~ 52 (69)
+..+..++....|+|||+.|+..+.+ ..|.+||+.+++.
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~ 235 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR 235 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE
Confidence 34456678889999999988665433 3688899987643
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.43 E-value=0.0084 Score=36.92 Aligned_cols=32 Identities=6% Similarity=0.183 Sum_probs=28.9
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
...|.+++|||++.+|+.++..|+++++.+..
T Consensus 226 ~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 226 RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred hheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 34588999999999999999999999999975
No 233
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=96.42 E-value=0.02 Score=24.21 Aligned_cols=40 Identities=8% Similarity=0.078 Sum_probs=26.3
Q ss_pred CCCCEEEEec-CCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 28 DDGITVFSGG-CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 28 ~~~~~l~s~~-~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
|++++|+.+. .++.|.++|..+++.+..+.. ......+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5788776655 578999999988766665543 233344444
No 234
>PRK03629 tolB translocation protein TolB; Provisional
Probab=96.40 E-value=0.022 Score=36.01 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=27.7
Q ss_pred CCCCCCeEEEEECCCCCEEEEec---CCCcEEEEECCCCC
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGG---CDKQVKTWPLLSGG 51 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~---~d~~v~iwd~~t~~ 51 (69)
..+...+...+|+|||+.|+..+ .+..+.+||+.+++
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~ 234 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 234 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC
Confidence 34456788999999999887543 34579999998764
No 235
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=96.22 E-value=0.015 Score=40.16 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=40.3
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCC-cEEEEE
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDA-PIKTIR 67 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~-~i~~v~ 67 (69)
...+|+.+|..+.|.|+ .+++++.|.+.++|+.+. ..+..+.+|.. .|+.+.
T Consensus 213 ~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~ 265 (967)
T KOG0974|consen 213 TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIA 265 (967)
T ss_pred ccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhhcceeEEE
Confidence 45589999999999998 899999999999998764 55556666653 355543
No 236
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.22 E-value=0.017 Score=39.41 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=34.7
Q ss_pred CC-CCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCccEEe-ccCCCcEE
Q 035276 17 KS-IEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIK 64 (69)
Q Consensus 17 ~~-~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~ 64 (69)
|. ++|..++|..||+.+ ++++..|.+-+||++..+.+..+ ..|...|.
T Consensus 242 ~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~ 292 (910)
T KOG1539|consen 242 QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVT 292 (910)
T ss_pred ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcc
Confidence 44 789999999999865 66667799999999875443333 35644443
No 237
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=96.15 E-value=0.029 Score=36.32 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=27.2
Q ss_pred CCeEEEEECC----CCCEEEEecCCCcEEEEECCCCCccEE
Q 035276 19 IEVLCSTLKD----DGITVFSGGCDKQVKTWPLLSGGQPVI 55 (69)
Q Consensus 19 ~~v~~~~~s~----~~~~l~s~~~d~~v~iwd~~t~~~~~~ 55 (69)
......+.+. +..+|++-+.|+++|+||+.++.++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 3455566666 778999999999999999999887544
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.13 E-value=0.026 Score=35.55 Aligned_cols=52 Identities=19% Similarity=0.059 Sum_probs=31.4
Q ss_pred CCCCCeEEEEECCCCCEEE-EecCCCc--EEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 16 NKSIEVLCSTLKDDGITVF-SGGCDKQ--VKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~-s~~~d~~--v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+.+.+...+|+|||+.|+ +.+.++. |.+||+.++. ...+..+........|
T Consensus 243 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~Lt~~~~~~~~~~~ 297 (435)
T PRK05137 243 NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TTRLTDSPAIDTSPSY 297 (435)
T ss_pred cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-eEEccCCCCccCceeE
Confidence 3445566789999999875 5555554 6667887754 3444444433333444
No 239
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=96.13 E-value=0.036 Score=34.73 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=28.5
Q ss_pred CCCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCc
Q 035276 17 KSIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~ 52 (69)
...++..++|||||+++ .+..-|-.|.+|.+.+.+.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 45667889999999766 5566788999999988443
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.12 E-value=0.038 Score=36.65 Aligned_cols=49 Identities=27% Similarity=0.417 Sum_probs=37.8
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccC--CCcEEEEEe
Q 035276 19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMH--DAPIKTIRL 68 (69)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h--~~~i~~v~~ 68 (69)
..|..+.|+.+|-.++.|..+|.+.+||+.+.+. ..+..| ..+|..+.|
T Consensus 229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-l~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-LLVKDHGYELPIKKLDW 279 (703)
T ss_pred CcceEEEecCCceeEEeeccCCcEEEEEcccCCc-eeecccCCccceeeecc
Confidence 3489999999999999999999999999998544 444444 455665555
No 241
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=0.0088 Score=39.45 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=31.4
Q ss_pred CCCCCCCeEEEEECCC--CCEEEEecCCCcEEEEECCC
Q 035276 14 NPNKSIEVLCSTLKDD--GITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~--~~~l~s~~~d~~v~iwd~~t 49 (69)
..+|..-|.++.|-|. .+.+++|..|+.|+++|+..
T Consensus 89 ~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 89 STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 3579999999999994 56789999999999999974
No 242
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=96.11 E-value=0.021 Score=38.04 Aligned_cols=45 Identities=29% Similarity=0.509 Sum_probs=38.6
Q ss_pred EECCCCCEEEEecCCCcEEEEECCCCCc-cEEeccCCCcEEEEEeC
Q 035276 25 TLKDDGITVFSGGCDKQVKTWPLLSGGQ-PVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 25 ~~s~~~~~l~s~~~d~~v~iwd~~t~~~-~~~~~~h~~~i~~v~~s 69 (69)
..+||+.+|++|+.|....+|.+.+.+. +..+.+|...|.+++|.
T Consensus 324 ~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~ 369 (720)
T KOG0321|consen 324 ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL 369 (720)
T ss_pred ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence 5889999999999999999999987544 45678999999999883
No 243
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.0086 Score=39.69 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=31.1
Q ss_pred hhhccCCCCCCC----eEEEEECCCCCEEEEecCCCcEEEE
Q 035276 9 VATNQNPNKSIE----VLCSTLKDDGITVFSGGCDKQVKTW 45 (69)
Q Consensus 9 ~~~~~~~~~~~~----v~~~~~s~~~~~l~s~~~d~~v~iw 45 (69)
|.++.+.+|... |+++.|.|...+|++++.|++|++|
T Consensus 692 VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 692 VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 345556677555 9999999999999999999999998
No 244
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.95 E-value=0.024 Score=39.62 Aligned_cols=51 Identities=14% Similarity=0.267 Sum_probs=43.1
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEE
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v 66 (69)
.|.....+++|+-+.++|+.|...|.|+++++.+|........|..+|.-+
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~v 1149 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLV 1149 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccc
Confidence 355667899999999999999999999999999987777777787777544
No 245
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=95.92 E-value=0.0078 Score=37.63 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=32.9
Q ss_pred CCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCc---cEEeccCC
Q 035276 17 KSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHD 60 (69)
Q Consensus 17 ~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~ 60 (69)
|...|.++.--. ++++|++.+.+|+|++||+..-++ ++.+.+|.
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv 344 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV 344 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence 566666665444 678899999999999999986566 56666663
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=95.87 E-value=0.053 Score=34.40 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=25.6
Q ss_pred CCCeEEEEECCCCCEEEEecCC---CcEEEEECCCCCc
Q 035276 18 SIEVLCSTLKDDGITVFSGGCD---KQVKTWPLLSGGQ 52 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d---~~v~iwd~~t~~~ 52 (69)
...+....|+|||+.|+....+ ..|.+||+.+++.
T Consensus 326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 3445678899999988765432 4689999988654
No 247
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.0053 Score=40.70 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=38.7
Q ss_pred CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC-------ccEEeccCCCcEEEEEe
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG-------QPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~-------~~~~~~~h~~~i~~v~~ 68 (69)
.+|...|..++=-.+-+.+++++.|++|++|.+.+.. |-.+++.|.++|..+.|
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf 792 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF 792 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee
Confidence 3566666655433345668899999999999997522 34567889999988765
No 248
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.80 E-value=0.057 Score=23.85 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCC---EEEEecCCCcEEEEECCC
Q 035276 19 IEVLCSTLKDDGI---TVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 19 ~~v~~~~~s~~~~---~l~s~~~d~~v~iwd~~t 49 (69)
+.+.++.|+|+.. .|+-+-..+.|.++|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3578999998654 676666678899999985
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.77 E-value=0.055 Score=37.10 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=41.0
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc---------------cEEeccCCCcEEEEEeC
Q 035276 19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ---------------PVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~---------------~~~~~~h~~~i~~v~~s 69 (69)
..+.++.|+....++++|+.||.+++..+.+... -+++.+|...|..+.|+
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN 80 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN 80 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec
Confidence 3467899999999999999999999998864221 13567899999998885
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.71 E-value=0.046 Score=34.82 Aligned_cols=37 Identities=5% Similarity=0.059 Sum_probs=26.3
Q ss_pred CCCCCeEEEEECCCCCEEEEecC-C--CcEEEEECCCCCc
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGC-D--KQVKTWPLLSGGQ 52 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~-d--~~v~iwd~~t~~~ 52 (69)
....++....|+|||+.|+..+. + ..|.+||+.+++.
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~ 254 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR 254 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe
Confidence 34456678899999998876543 3 3588889887643
No 251
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=95.63 E-value=0.062 Score=36.68 Aligned_cols=54 Identities=11% Similarity=0.356 Sum_probs=40.8
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC--CCc--cEEeccCCCcEEEEEeC
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS--GGQ--PVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t--~~~--~~~~~~h~~~i~~v~~s 69 (69)
.|...+.+.+++|.+++++++..||.|.+|.-.. +.. ...+.=|...|.++.||
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS 260 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS 260 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe
Confidence 3566678899999999999999999999997532 221 23344477888888875
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=95.61 E-value=0.0088 Score=43.99 Aligned_cols=38 Identities=11% Similarity=0.026 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~ 52 (69)
..|...+.+++|-|..+.|++|+.+|.|.+||+...+.
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 56889999999999999999999999999999976443
No 253
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.53 E-value=0.077 Score=33.50 Aligned_cols=47 Identities=13% Similarity=-0.049 Sum_probs=29.0
Q ss_pred eEEEEECCCCCEEE-EecCCC--cEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 21 VLCSTLKDDGITVF-SGGCDK--QVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 21 v~~~~~s~~~~~l~-s~~~d~--~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.....|+|||+.|+ +.+.++ .|.+||+.++. ...+..+........|
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~ 299 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTW 299 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEE
Confidence 34678999999875 444444 58999998754 3444444333333444
No 254
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.52 E-value=0.077 Score=34.93 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=27.9
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
.-.+..++|.|+|..+++|+..|.+++||+.-
T Consensus 299 ~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 299 EFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 34456789999999999999999999999864
No 255
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.40 E-value=0.081 Score=31.93 Aligned_cols=29 Identities=7% Similarity=0.178 Sum_probs=23.9
Q ss_pred EEEEECCCCCEEEEec-CCCcEEEEECCCC
Q 035276 22 LCSTLKDDGITVFSGG-CDKQVKTWPLLSG 50 (69)
Q Consensus 22 ~~~~~s~~~~~l~s~~-~d~~v~iwd~~t~ 50 (69)
..+.|+|++++++++. .++.|.+|++...
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 4688999999998885 4789999999653
No 256
>PRK02889 tolB translocation protein TolB; Provisional
Probab=95.33 E-value=0.061 Score=33.94 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=29.0
Q ss_pred CeEEEEECCCCCEEE-EecCCCcEEEEECCC-CCccEEeccCCCcEEEEEe
Q 035276 20 EVLCSTLKDDGITVF-SGGCDKQVKTWPLLS-GGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~-s~~~d~~v~iwd~~t-~~~~~~~~~h~~~i~~v~~ 68 (69)
.....+|+|||+.|+ +.+.++..++|.+.. +.....+..+........|
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~w 291 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFF 291 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEE
Confidence 345689999999886 567777777765532 2334444444333333444
No 257
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=95.30 E-value=0.012 Score=38.15 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=36.5
Q ss_pred CeEEEE-ECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEE
Q 035276 20 EVLCST-LKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66 (69)
Q Consensus 20 ~v~~~~-~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v 66 (69)
.|..+- |.|..+++++|+.-|.|.+||-.+++.++.+.+...-|+|+
T Consensus 395 TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCL 442 (559)
T KOG1334|consen 395 TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCL 442 (559)
T ss_pred ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEecc
Confidence 466665 78899999999999999999998877666665544456665
No 258
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.29 E-value=0.013 Score=35.55 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=36.7
Q ss_pred eEEEEECCCCC-EEEEecCCCcEEEEECCCCCccE-EeccCCCcEEEEEeC
Q 035276 21 VLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQPV-IVAMHDAPIKTIRLL 69 (69)
Q Consensus 21 v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~~-~~~~h~~~i~~v~~s 69 (69)
|..++-.|..+ .+++|+.||.+-+||......+. .+..|+.+|+.+.|.
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FH 232 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFH 232 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheecc
Confidence 66777778544 56778899999999998754433 357899998888773
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.18 E-value=0.11 Score=32.48 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=32.4
Q ss_pred CCCeEEEEECCCCC-EEEEec-CCCcEEEEECCCCCccEEe
Q 035276 18 SIEVLCSTLKDDGI-TVFSGG-CDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 18 ~~~v~~~~~s~~~~-~l~s~~-~d~~v~iwd~~t~~~~~~~ 56 (69)
..++..++++||++ +|++.+ .++.|.+.|+.+++.+..+
T Consensus 298 G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 298 GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 44678899999999 887666 6788999999998777766
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.10 E-value=0.14 Score=32.17 Aligned_cols=38 Identities=18% Similarity=0.043 Sum_probs=24.8
Q ss_pred eEEEEECCCCCEEE-EecCCC--cEEEEECCCCCccEEeccC
Q 035276 21 VLCSTLKDDGITVF-SGGCDK--QVKTWPLLSGGQPVIVAMH 59 (69)
Q Consensus 21 v~~~~~s~~~~~l~-s~~~d~--~v~iwd~~t~~~~~~~~~h 59 (69)
.....|+|||+.|+ +...++ .|.+||+.++. ...+..+
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~ 285 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-LSRVTNH 285 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEcccC
Confidence 34578999999886 444444 57788988754 3334333
No 261
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=95.09 E-value=0.11 Score=33.35 Aligned_cols=41 Identities=7% Similarity=0.035 Sum_probs=34.8
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
.|..-|.+++|....++|++|..+++|...|+++.+.+..+
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~ 143 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA 143 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee
Confidence 45677999999999999999999999999999985554443
No 262
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.09 E-value=0.097 Score=34.87 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=31.0
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~ 52 (69)
..+++..|..++....|++|+.++.|..||-.+...
T Consensus 174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred ccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 457788999999999999999999999999887443
No 263
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.81 E-value=0.22 Score=31.67 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=26.4
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPL 47 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~ 47 (69)
..+.+.-+.||||+.+|..+..|...++|+.
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence 3445667899999999999999999999954
No 264
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.78 E-value=0.14 Score=33.65 Aligned_cols=51 Identities=12% Similarity=-0.140 Sum_probs=40.1
Q ss_pred CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEE
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKT 65 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~ 65 (69)
.+|.++|..+.++.+-..|++++.|+.+..|+......+.........+.+
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 468899999999999999999999999999999886555555444443433
No 265
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.089 Score=33.33 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=38.3
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEE-eccCCCcEEEE
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI-VAMHDAPIKTI 66 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~-~~~h~~~i~~v 66 (69)
+.++.++...|+++++++|..-+.+..+|+..+..+.. +.+-.+.|+++
T Consensus 247 E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 247 ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence 66788889999999999999999999999998665443 45555555544
No 266
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.71 E-value=0.2 Score=31.01 Aligned_cols=35 Identities=14% Similarity=-0.054 Sum_probs=24.0
Q ss_pred CCCCeEEEEECCCCCEEE-EecCC--CcEEEEECCCCC
Q 035276 17 KSIEVLCSTLKDDGITVF-SGGCD--KQVKTWPLLSGG 51 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~-s~~~d--~~v~iwd~~t~~ 51 (69)
+...+..++|+|||+.|+ +...+ ..|.+||+.++.
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 334456689999999775 44444 368888988753
No 267
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=94.70 E-value=0.028 Score=34.07 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=32.3
Q ss_pred cCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCC
Q 035276 13 QNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t 49 (69)
.+..|..++..+-|.| ++..|+++++||.+-.||..+
T Consensus 218 ~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 218 LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 4456889999999999 678999999999999999875
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.29 E-value=0.25 Score=31.54 Aligned_cols=46 Identities=13% Similarity=-0.000 Sum_probs=27.7
Q ss_pred EEEEECCCCCEEEE-ecCCCc--EEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 22 LCSTLKDDGITVFS-GGCDKQ--VKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 22 ~~~~~s~~~~~l~s-~~~d~~--v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
...+|+|||+.|+. ...++. |.++|+.+++ ...+..+........|
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~~~~~p~w 313 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA-LTRITRHRAIDTEPSW 313 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC-eEECccCCCCccceEE
Confidence 45789999998854 455554 7777887753 3444334333333444
No 269
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.24 E-value=0.11 Score=31.44 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=25.0
Q ss_pred eEEEEECCCCCEEEEecC-CCcEEEEECCC
Q 035276 21 VLCSTLKDDGITVFSGGC-DKQVKTWPLLS 49 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~-d~~v~iwd~~t 49 (69)
+..++|+||++++++... +++|.+||+..
T Consensus 177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred CceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 467899999999988775 89999999974
No 270
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=94.06 E-value=0.11 Score=32.68 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=28.5
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCC-CccEEeccC
Q 035276 19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG-GQPVIVAMH 59 (69)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~-~~~~~~~~h 59 (69)
..|.++.|+++|+++++-.. -+|++||+... +.+..++.|
T Consensus 273 sSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 273 SSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred hhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 34678999999999987432 58999999653 334555555
No 271
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=0.42 Score=32.97 Aligned_cols=39 Identities=28% Similarity=0.259 Sum_probs=28.4
Q ss_pred CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 29 DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 29 ~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
+|+++++|+.||+|.+-.+.+.+....+ .-..++.++++
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial 120 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIAL 120 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeEEe
Confidence 5999999999999999999875543332 24455666654
No 272
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.00 E-value=0.14 Score=31.51 Aligned_cols=37 Identities=8% Similarity=0.066 Sum_probs=27.8
Q ss_pred EEECCCCCEEEEe-----cCCCcEEEEECC-CCCccEEeccCC
Q 035276 24 STLKDDGITVFSG-----GCDKQVKTWPLL-SGGQPVIVAMHD 60 (69)
Q Consensus 24 ~~~s~~~~~l~s~-----~~d~~v~iwd~~-t~~~~~~~~~h~ 60 (69)
..|++||++|++. ...|.|-+||.. +..++.++..|.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G 98 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG 98 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC
Confidence 5799999999884 445799999998 445556665554
No 273
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.89 E-value=0.39 Score=29.07 Aligned_cols=45 Identities=11% Similarity=0.072 Sum_probs=36.9
Q ss_pred EEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 24 STLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 24 ~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+..-+|...++.-..++|+..|..+|+.+.++.-...+|++++|
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 445667777778888899999999999988887767888998887
No 274
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=93.85 E-value=0.18 Score=31.52 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=27.6
Q ss_pred CeEEEEECCCCCEEEEecCCC--cEEEEECCCCCccEEec
Q 035276 20 EVLCSTLKDDGITVFSGGCDK--QVKTWPLLSGGQPVIVA 57 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~d~--~v~iwd~~t~~~~~~~~ 57 (69)
++..+.|++||+.++.+.++. .|.+||..|.+.+..+.
T Consensus 317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 488899999999986665544 69999999977666554
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=93.69 E-value=0.092 Score=32.83 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC-ccEEeccC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG-QPVIVAMH 59 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~-~~~~~~~h 59 (69)
...|.++.|+++|+++++-.. -++++||+...+ ++.++.-|
T Consensus 280 vsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 280 VSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 455778999999999886443 479999998644 44555444
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.63 E-value=0.67 Score=30.64 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=37.6
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
..-+.|..+..+++|++++.+.....+-+.|+.+|.....=+....-|....|
T Consensus 399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~ 451 (668)
T COG4946 399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDW 451 (668)
T ss_pred CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEE
Confidence 34566889999999999999999999999999987542221223334444444
No 277
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.48 E-value=0.55 Score=28.88 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=31.6
Q ss_pred CCeEEEEECCCCCEEEEec-CCCcEEEEECC--CCCccEEec--cCCCcEEEEEe
Q 035276 19 IEVLCSTLKDDGITVFSGG-CDKQVKTWPLL--SGGQPVIVA--MHDAPIKTIRL 68 (69)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~--t~~~~~~~~--~h~~~i~~v~~ 68 (69)
.....++++|+|++|++++ .++.|.+|++. +| .+.... -.-....||.|
T Consensus 292 ~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG-~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 292 KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG-KLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT-EEEEEEEEEESSSEEEEEE
T ss_pred CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC-cEEEecccccCCCCEEEeC
Confidence 3478899999999998776 56789999774 44 333322 12344566665
No 278
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.32 E-value=0.2 Score=33.98 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=31.1
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
.|...|.+++|++++..+++|...|+|..-.+.+
T Consensus 122 ~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 122 SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 3788999999999999999999999999988876
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=93.14 E-value=0.26 Score=30.90 Aligned_cols=32 Identities=9% Similarity=-0.034 Sum_probs=26.2
Q ss_pred ECCCCCEEEEecC----------CCcEEEEECCCCCccEEec
Q 035276 26 LKDDGITVFSGGC----------DKQVKTWPLLSGGQPVIVA 57 (69)
Q Consensus 26 ~s~~~~~l~s~~~----------d~~v~iwd~~t~~~~~~~~ 57 (69)
++||++.|+.+.. +..|.+||+.+++....+.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~ 94 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE 94 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence 9999999977665 7799999999987665553
No 280
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=93.01 E-value=0.45 Score=31.51 Aligned_cols=39 Identities=8% Similarity=0.092 Sum_probs=29.7
Q ss_pred CCCeEEEEECCCCCEEEEec---CCCcEEEEECCCCCccEEe
Q 035276 18 SIEVLCSTLKDDGITVFSGG---CDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~---~d~~v~iwd~~t~~~~~~~ 56 (69)
.++=.++-|+|.|++|+.+| ..|.+.+||+...+++..+
T Consensus 311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 44556788999999987655 5689999999886665444
No 281
>PRK01029 tolB translocation protein TolB; Provisional
Probab=92.71 E-value=0.8 Score=29.19 Aligned_cols=49 Identities=6% Similarity=0.037 Sum_probs=30.3
Q ss_pred CeEEEEECCCCCEEEEe-c--CCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 20 EVLCSTLKDDGITVFSG-G--CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~-~--~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+....|+|||+.|+.. . .+..|.++|+.+++. ..+......+...+|+
T Consensus 372 ~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~Lt~~~g~~~~p~Ws 423 (428)
T PRK01029 372 NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-RKIVIGSGEKRFPSWG 423 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCcccCceec
Confidence 45668999999988643 3 235788889877543 3333333444555554
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.56 E-value=0.41 Score=32.01 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=29.0
Q ss_pred eEEEEECCCCCEEEEec-----------CCCcEEEEECCCCCccEEec
Q 035276 21 VLCSTLKDDGITVFSGG-----------CDKQVKTWPLLSGGQPVIVA 57 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~-----------~d~~v~iwd~~t~~~~~~~~ 57 (69)
|.-+.|||.-++|++=+ ....+.|||+.+|...+.+.
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~ 299 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFP 299 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhccee
Confidence 67789999999998843 23689999999987665553
No 283
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=92.36 E-value=0.27 Score=32.52 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=22.7
Q ss_pred EEEECCCCCEEEEecC------CCcEEEEECCCCCc
Q 035276 23 CSTLKDDGITVFSGGC------DKQVKTWPLLSGGQ 52 (69)
Q Consensus 23 ~~~~s~~~~~l~s~~~------d~~v~iwd~~t~~~ 52 (69)
-+.|+|||++++++.. |..++||+. +|..
T Consensus 359 ~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~ 393 (566)
T KOG2315|consen 359 VFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSL 393 (566)
T ss_pred EEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCce
Confidence 4689999999988754 678999996 4444
No 284
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=92.29 E-value=0.37 Score=19.13 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=19.2
Q ss_pred CEEEEecCCCcEEEEECCCCCccE
Q 035276 31 ITVFSGGCDKQVKTWPLLSGGQPV 54 (69)
Q Consensus 31 ~~l~s~~~d~~v~iwd~~t~~~~~ 54 (69)
..++.+..++.+..+|..+|+...
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEE
Confidence 357788899999999998876543
No 285
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.99 E-value=0.32 Score=33.65 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=38.9
Q ss_pred CCCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCCcc-EEeccCCCcEEEEEeC
Q 035276 14 NPNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQP-VIVAMHDAPIKTIRLL 69 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~-~~~~~h~~~i~~v~~s 69 (69)
+.+|+..+.++.|.|... .+++++.|..+..||+.+.... .....-......|+|+
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN 167 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence 347899999999999765 6789999999999999875432 3332222333445553
No 286
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.86 E-value=0.44 Score=33.65 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=32.1
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
...|..++..+.|||+|+.++++..-|.+.+|...-
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 346889999999999999999999999999998763
No 287
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.60 E-value=0.2 Score=32.67 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=42.5
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+++..+.-+|-...+-.|...|+|.+|.-.+.+.+..+--|..+|+++++
T Consensus 251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv 301 (545)
T KOG1272|consen 251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAV 301 (545)
T ss_pred CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEE
Confidence 556666788888888899999999999998876666677779999999876
No 288
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.60 E-value=2.1 Score=27.30 Aligned_cols=39 Identities=3% Similarity=-0.204 Sum_probs=30.1
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
.+++..++.||++++|+.-..++.+.+....-.+.+..+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence 357999999999999998888999888876444444333
No 289
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.01 E-value=1.4 Score=30.29 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=29.5
Q ss_pred CCCCCeEEEEECCC---CCEEEEecCCCcEEEEECCCCC
Q 035276 16 NKSIEVLCSTLKDD---GITVFSGGCDKQVKTWPLLSGG 51 (69)
Q Consensus 16 ~~~~~v~~~~~s~~---~~~l~s~~~d~~v~iwd~~t~~ 51 (69)
.+...|..+.|.|. +.+|+.-..|+++|+||+....
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 34567889999996 5789888999999999997543
No 290
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=90.74 E-value=0.57 Score=35.43 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=36.9
Q ss_pred CCCeEEEEECCCCCEEEEec-CCCcEEEEE--CC---CCCcc--EEeccCCCcEEEEEeC
Q 035276 18 SIEVLCSTLKDDGITVFSGG-CDKQVKTWP--LL---SGGQP--VIVAMHDAPIKTIRLL 69 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~-~d~~v~iwd--~~---t~~~~--~~~~~h~~~i~~v~~s 69 (69)
..++....|||||.++++.+ .|.-+++|+ .. .++.. ...-.|..+|+.+.|.
T Consensus 169 ~~~v~~~~~SpDG~f~at~g~~dclaKvwy~~~~~~~~~~~~f~~vyL~HP~~Vs~~~WR 228 (2439)
T KOG1064|consen 169 PSPVYSSTISPDGEFFATIGKRDCLAKVWYKSTVSQSGGEESFSFVYLPHPRRVSGFQWR 228 (2439)
T ss_pred CcceeEEEEcCCcceEEeccccCcchhhhcccccccccCccceeeEeccCCcccccceec
Confidence 34588899999999998766 678899999 21 11111 2234699999888874
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.71 E-value=1 Score=27.89 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=29.1
Q ss_pred CCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCccE
Q 035276 18 SIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPV 54 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~ 54 (69)
..-+-++++++++..+ +|+-..+.+.+||..++..+.
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence 3447789999999877 556678899999999976543
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=90.47 E-value=1.1 Score=31.94 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=28.8
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276 19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~ 52 (69)
..+..++++++|+.+++...+..|++||+.+++.
T Consensus 859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 3567899999999888888999999999988653
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.32 E-value=2.3 Score=24.65 Aligned_cols=48 Identities=6% Similarity=-0.096 Sum_probs=34.7
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
..-.+++..+|+..++....+.|.++|.+ |+.+..+.-....+.+++|
T Consensus 185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred CCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 35679999999877777788899999976 6766665544456777776
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=90.11 E-value=0.82 Score=31.91 Aligned_cols=56 Identities=4% Similarity=-0.032 Sum_probs=42.5
Q ss_pred cCCCCCCCeEEEEECCCC------------CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 13 QNPNKSIEVLCSTLKDDG------------ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~------------~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+.-|...|..+.|.|.. -.|+++...|.|.+||...+..+..+..|..+++.+.|
T Consensus 50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W 117 (1062)
T KOG1912|consen 50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCW 117 (1062)
T ss_pred ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheee
Confidence 344577788889887731 13566777899999999988777778888888887776
No 295
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=89.66 E-value=0.9 Score=18.96 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=20.2
Q ss_pred EEEEecCCCcEEEEECCCCCccEEe
Q 035276 32 TVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 32 ~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
.++.+..|+.+.-.|..+|+.+-.+
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEee
Confidence 4566789999999999998876554
No 296
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.62 E-value=0.78 Score=26.80 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.8
Q ss_pred ECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276 26 LKDDGITVFSGGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 26 ~s~~~~~l~s~~~d~~v~iwd~~t~~~ 52 (69)
+..++.+|++-..+|.+.+||+.+++.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~ 44 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKA 44 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCee
Confidence 445788999999999999999998654
No 297
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.54 E-value=1.4 Score=28.76 Aligned_cols=34 Identities=9% Similarity=0.051 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCEEEE-ecCCCcEEEEECCCCCcc
Q 035276 20 EVLCSTLKDDGITVFS-GGCDKQVKTWPLLSGGQP 53 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s-~~~d~~v~iwd~~t~~~~ 53 (69)
-|.++..|.|.++|+. +..+|.++.||+.....+
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 3678999999999955 557999999999875543
No 298
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.42 E-value=0.66 Score=32.23 Aligned_cols=57 Identities=9% Similarity=0.140 Sum_probs=42.5
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe--ccCCCcEEEEEeC
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV--AMHDAPIKTIRLL 69 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~--~~h~~~i~~v~~s 69 (69)
.+.+|...|.-+.|+...+.|-++..+|-|.+|-+..|.=.... .....-|.++.|+
T Consensus 66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn 124 (1189)
T KOG2041|consen 66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN 124 (1189)
T ss_pred hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc
Confidence 45689999999999999999999999999999999876532221 1233445666663
No 299
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.37 E-value=1.8 Score=27.89 Aligned_cols=45 Identities=11% Similarity=-0.144 Sum_probs=35.2
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCC
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDA 61 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~ 61 (69)
....+.+++.+|++++.++.-.=|.|-++|+.++..++..+|...
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 345578899999999888777778999999999777666666543
No 300
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=89.03 E-value=2.7 Score=30.79 Aligned_cols=52 Identities=15% Similarity=0.042 Sum_probs=37.4
Q ss_pred CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec-cCCCcEEEE
Q 035276 15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA-MHDAPIKTI 66 (69)
Q Consensus 15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~-~h~~~i~~v 66 (69)
....+.|.+++.+|.+.+++.|...|.+-+||+.=+..+.... .+..+|..+
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHV 1244 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceE
Confidence 3345678999999999999999999999999997644433321 223445443
No 301
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=88.90 E-value=1.1 Score=18.80 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=15.9
Q ss_pred CCCEEEEecCCCcEEEEECCC
Q 035276 29 DGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 29 ~~~~l~s~~~d~~v~iwd~~t 49 (69)
.+..|+.++.|+.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456788899999999999764
No 302
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.82 E-value=3 Score=25.66 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCEEEEec-CCCcEEEEECC
Q 035276 20 EVLCSTLKDDGITVFSGG-CDKQVKTWPLL 48 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~ 48 (69)
....++++|||++|+.+. .+..|.+|++.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 467899999999997765 56789999994
No 303
>PRK04043 tolB translocation protein TolB; Provisional
Probab=88.64 E-value=4.6 Score=25.83 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCE-EEE-ecC--CCcEEEEECCCCCc
Q 035276 20 EVLCSTLKDDGIT-VFS-GGC--DKQVKTWPLLSGGQ 52 (69)
Q Consensus 20 ~v~~~~~s~~~~~-l~s-~~~--d~~v~iwd~~t~~~ 52 (69)
......|+|||+. ++. ... +..|.++|+.+++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~ 225 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK 225 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE
Confidence 6678899999985 553 322 35788889988654
No 304
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=88.60 E-value=0.53 Score=29.75 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=25.8
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
.|..+.+...-..|++++.|+.|++||+..
T Consensus 366 gItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 366 GITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred ceeEEEhhhhccceeecCCceEEEEEechh
Confidence 366777888888899999999999999865
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.51 E-value=0.45 Score=31.10 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=33.3
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
.....++.|+|++..+.+-+.|.+|+++++.+|+..+.+
T Consensus 201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 445678899999999999999999999999998765544
No 306
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.49 E-value=1.5 Score=28.35 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=27.5
Q ss_pred CCCeEEEEECCCCC-EEEEecCCCcEEEEECCCC
Q 035276 18 SIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSG 50 (69)
Q Consensus 18 ~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~ 50 (69)
...+++|+|+-|.. +|+.|-..|.|.+||+...
T Consensus 235 ~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 235 YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred cCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 36789999999765 6788889999999999653
No 307
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=88.27 E-value=1.5 Score=27.89 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=33.2
Q ss_pred EEEEECCCCCEEEEe-cCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 22 LCSTLKDDGITVFSG-GCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 22 ~~~~~s~~~~~l~s~-~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.-+-|..|+.+++++ .-|+.|++|++...+-..++..-..++..+.||
T Consensus 52 ~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WS 100 (447)
T KOG4497|consen 52 VYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWS 100 (447)
T ss_pred hheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeEC
Confidence 345677777766554 457799999998755445666666777777775
No 308
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=87.68 E-value=1.6 Score=28.93 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=29.0
Q ss_pred CeEEEEECCCCCEEEEecCCC---------------cEEEEECCCCCccEEeccC
Q 035276 20 EVLCSTLKDDGITVFSGGCDK---------------QVKTWPLLSGGQPVIVAMH 59 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~d~---------------~v~iwd~~t~~~~~~~~~h 59 (69)
-|..+.|+|.+.+|.+=.... .+.+||..+|..+..+..-
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~ 127 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGI 127 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecccc
Confidence 367789999999998744332 4899999997665555433
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.51 E-value=0.23 Score=34.93 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=39.4
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 22 LCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
.+++|.|..-.|+.|..-+.+.+|...+.+.......|..+|..+.||
T Consensus 63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS 110 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWS 110 (1416)
T ss_pred hhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEec
Confidence 468899987778888899999999998855444556799999999986
No 310
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.14 E-value=2.2 Score=30.95 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=28.4
Q ss_pred CCCCC--eEEEEECCCCC-EEEEecCCCcEEEEECCC
Q 035276 16 NKSIE--VLCSTLKDDGI-TVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 16 ~~~~~--v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t 49 (69)
.|+.+ |..+.+.+.|- .|++|+.||.|++||+..
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 45555 89999998653 599999999999999987
No 311
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=87.06 E-value=0.85 Score=31.83 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=32.0
Q ss_pred EEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 32 TVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 32 ~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.++.|...|+|.++|+.++.....+..|...|.++.|
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW 475 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEW 475 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeee
Confidence 3577899999999999997766778889999999887
No 312
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=87.00 E-value=1.2 Score=17.35 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=17.3
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEE
Q 035276 21 VLCSTLKDDGITVFSGGCDKQVKTW 45 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d~~v~iw 45 (69)
+..++.+++|+.+++-.....|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777888777776666666654
No 313
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.87 E-value=0.62 Score=31.47 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=30.1
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~ 52 (69)
...|..+|.++.|-.+-++++++ |+.|.+||---+..
T Consensus 780 Y~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~ 816 (1034)
T KOG4190|consen 780 YQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRL 816 (1034)
T ss_pred hhhccCcccceeeeeccceeeec--cCcceeecccccch
Confidence 45689999999999998888654 89999999865543
No 314
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=86.76 E-value=2.5 Score=29.45 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=30.1
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCCc-cEEeccCCCcEEEE
Q 035276 20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ-PVIVAMHDAPIKTI 66 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~-~~~~~~h~~~i~~v 66 (69)
...+++-+.+| +|+.|+.+|.||+||-. |.. ...+++-..+|..+
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~i 624 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGI 624 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEE
Confidence 34455555544 68889999999999953 332 23456666777665
No 315
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=86.67 E-value=3.3 Score=21.96 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=22.3
Q ss_pred EECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCC
Q 035276 25 TLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHD 60 (69)
Q Consensus 25 ~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~ 60 (69)
.|.-|| ..|+.|+.|..|++|+=. +.+.++..+.
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~ 43 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD 43 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc
Confidence 345454 468999999999999843 3444444333
No 316
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=86.51 E-value=2.7 Score=21.16 Aligned_cols=28 Identities=4% Similarity=0.057 Sum_probs=21.5
Q ss_pred EEEEECCCCCEEEEe-cCCCcEEEEECCC
Q 035276 22 LCSTLKDDGITVFSG-GCDKQVKTWPLLS 49 (69)
Q Consensus 22 ~~~~~s~~~~~l~s~-~~d~~v~iwd~~t 49 (69)
..+.++|++++|+.+ ..+..|++|+...
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 567899999988554 4678899988653
No 317
>PRK04043 tolB translocation protein TolB; Provisional
Probab=85.63 E-value=7.1 Score=25.02 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=21.9
Q ss_pred CCCeEEEEECCCCCEEE-EecCC--CcEEEEECCCCC
Q 035276 18 SIEVLCSTLKDDGITVF-SGGCD--KQVKTWPLLSGG 51 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~-s~~~d--~~v~iwd~~t~~ 51 (69)
.+......|+|||+.|+ +...+ ..|.++|+.++.
T Consensus 232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 33345678999998775 33333 467777877654
No 318
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=85.49 E-value=5 Score=28.81 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=26.5
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEECCCCC
Q 035276 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGG 51 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~ 51 (69)
...++++++|...++-..++.|++||..++.
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 4578999999988888899999999998754
No 319
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=85.08 E-value=6.8 Score=27.86 Aligned_cols=52 Identities=10% Similarity=-0.045 Sum_probs=40.4
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEE----ECCCCCccEEeccCCCcEEEEEeC
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTW----PLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iw----d~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
....|.++.|-++...++.+..+|.|-+. |..+ ..+.....-...|.+++||
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~-~~~E~VG~vd~GI~a~~WS 129 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE-DEIEIVGSVDSGILAASWS 129 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC-ceeEEEEEEcCcEEEEEEC
Confidence 34578999999999999889999999988 5444 3344455667889999997
No 320
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.79 E-value=0.69 Score=32.82 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.4
Q ss_pred EECCCCCEEEEecCCCcEEEEECCC
Q 035276 25 TLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 25 ~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
..+|||+.++.++.||.++.|.+.-
T Consensus 242 ~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 242 SLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred eeCCCCcEEEEeecCCccceeeeee
Confidence 3899999999999999999999863
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.76 E-value=3.1 Score=29.04 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=29.4
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
.-.++|.++.|. |.+++=++.+| |++||+.++..+..+
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeecc
Confidence 347789999995 78887777777 899999987665444
No 322
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.05 E-value=5.5 Score=26.60 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=29.7
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
..++|.++.|++|.+.|+.-..|+.|.+++...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~ 97 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP 97 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCC
Confidence 466899999999999999999999999999844
No 323
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=83.90 E-value=3.5 Score=26.61 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=29.9
Q ss_pred CCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 28 DDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 28 ~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
+|...++.|-.+|.|++|.- +|..+....-|..+|..++.
T Consensus 77 ~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~ 116 (415)
T PF14655_consen 77 PDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKC 116 (415)
T ss_pred CCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEe
Confidence 45677899999999999974 66665554558888877754
No 324
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=83.65 E-value=3.3 Score=25.51 Aligned_cols=32 Identities=9% Similarity=-0.000 Sum_probs=25.0
Q ss_pred CCCEEEEecCCCcEEEEECCCCCccEEeccCC
Q 035276 29 DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHD 60 (69)
Q Consensus 29 ~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~ 60 (69)
.+..|+.++.++.+.++|..+|+.+..+..+.
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 46688889999999999999987766554333
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.33 E-value=2.5 Score=29.05 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=37.7
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc-EEe-----ccCCCcEEEEEeC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP-VIV-----AMHDAPIKTIRLL 69 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~-~~~-----~~h~~~i~~v~~s 69 (69)
.+.+..+..+++...++.|+..+.|.++.++.+... ..+ ..|...|+++.|+
T Consensus 76 ~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws 133 (726)
T KOG3621|consen 76 TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS 133 (726)
T ss_pred cceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEec
Confidence 344556778888888888999999999998763321 111 3477889999996
No 326
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=83.32 E-value=5.6 Score=21.75 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=20.6
Q ss_pred CCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCC
Q 035276 18 SIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGG 51 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~ 51 (69)
+..++-.-|.+|.+.| ++|-.|+.|+.|++..++
T Consensus 10 s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~ 44 (136)
T PF08954_consen 10 SSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDES 44 (136)
T ss_dssp -SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SST
T ss_pred CCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCC
Confidence 3446666799999887 456689999999998753
No 327
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=82.80 E-value=3.9 Score=29.00 Aligned_cols=29 Identities=7% Similarity=-0.026 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWP 46 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd 46 (69)
...|.+++||||.+.|+....++++.+-.
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 56788999999999998888788777654
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.75 E-value=2.8 Score=28.53 Aligned_cols=33 Identities=9% Similarity=-0.055 Sum_probs=26.1
Q ss_pred CCeEEEEECCCCCEEEEe-cCCCcEEEEECCCCC
Q 035276 19 IEVLCSTLKDDGITVFSG-GCDKQVKTWPLLSGG 51 (69)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~-~~d~~v~iwd~~t~~ 51 (69)
..+..++++|||++++.+ ..+.++.+.|+.+.+
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 345678999999998655 578999999998743
No 329
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.33 E-value=1.3 Score=30.97 Aligned_cols=47 Identities=13% Similarity=0.214 Sum_probs=34.5
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEECCCCCc-cEEeccCCCcEEEEEe
Q 035276 22 LCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ-PVIVAMHDAPIKTIRL 68 (69)
Q Consensus 22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~-~~~~~~h~~~i~~v~~ 68 (69)
..+.|+-....++..+....|++||+..|.. +..+++|...|..+.|
T Consensus 162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f 209 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDF 209 (1081)
T ss_pred ceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHH
Confidence 3578888666666667777899999987654 4567788887777665
No 330
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=81.99 E-value=3.6 Score=23.35 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=18.4
Q ss_pred CCCCCEEEEecCCCcEEEEECCCCCc
Q 035276 27 KDDGITVFSGGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 27 s~~~~~l~s~~~d~~v~iwd~~t~~~ 52 (69)
..++..|+.++.++.+..||+.+|+.
T Consensus 209 ~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 209 SVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp ECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 34566676666788888888888654
No 331
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=81.89 E-value=3.2 Score=26.54 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=27.1
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
..-+..+-|...|.+|++|..+|.|.++.-+.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~ 56 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREK 56 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccc
Confidence 34467789999999999999999999998654
No 332
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=81.79 E-value=2.2 Score=28.35 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=30.3
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV 54 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~ 54 (69)
.......++..++|||.|++|++....+ |.+|+-.....+.
T Consensus 27 ~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~ 67 (561)
T COG5354 27 RFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV 67 (561)
T ss_pred cccccCcchhheeecCcchheehhhccc-eEEccccchhhee
Confidence 3334567788899999999998876665 8999877654433
No 333
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.77 E-value=7.2 Score=28.69 Aligned_cols=50 Identities=6% Similarity=-0.005 Sum_probs=34.3
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc---C-CCcEEEEEe
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM---H-DAPIKTIRL 68 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~---h-~~~i~~v~~ 68 (69)
....++++|+|.|+.++.|-..|++..|.-. ++....+.. . ...|.++.|
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence 4457889999999999999999999988643 232222211 1 355677766
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=81.76 E-value=10 Score=24.31 Aligned_cols=51 Identities=14% Similarity=-0.071 Sum_probs=33.2
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEE--ecc------CCCcEEEEEe
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI--VAM------HDAPIKTIRL 68 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~--~~~------h~~~i~~v~~ 68 (69)
..++|..++.| |=.+++.|..+|.+.+.|++....+.. +.. ....|.++.|
T Consensus 85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF 143 (395)
T PF08596_consen 85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEF 143 (395)
T ss_dssp -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEE
T ss_pred cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEE
Confidence 36789999997 677999999999999999966544432 222 2345666666
No 335
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.46 E-value=4.9 Score=25.17 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=22.5
Q ss_pred EEEECCCCCEEEEe-c----CCCcEEEEECCCCCc
Q 035276 23 CSTLKDDGITVFSG-G----CDKQVKTWPLLSGGQ 52 (69)
Q Consensus 23 ~~~~s~~~~~l~s~-~----~d~~v~iwd~~t~~~ 52 (69)
...++||+++++-+ + ....++++|+.+++.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~ 162 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF 162 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence 57899999988643 2 224799999999754
No 336
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=81.05 E-value=1.4 Score=26.13 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=42.3
Q ss_pred ccchhhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCc
Q 035276 3 TFGAAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAP 62 (69)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~ 62 (69)
.||+....++.+..|...|+.+ |.+-.++..+.+..++++.... ....+++|...
T Consensus 140 yFG~~~~~l~IikcHqDevle~---PE~a~llasSe~ceve~fs~~~--~~l~fQGHPEy 194 (245)
T KOG3179|consen 140 YFGEIPKSLNIIKCHQDEVLEL---PEGAELLASSEKCEVEMFSIED--HLLCFQGHPEY 194 (245)
T ss_pred hcccchhhhhHHhhcccceecC---CchhhhhccccccceEEEEecc--eEEEecCCchh
Confidence 5787777788888998888765 6677777788899999998754 56678888643
No 337
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.64 E-value=3.4 Score=27.83 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=25.1
Q ss_pred CCCEEEEecCCCcEEEEECCCCCc-cEEeccCCCcEEEE
Q 035276 29 DGITVFSGGCDKQVKTWPLLSGGQ-PVIVAMHDAPIKTI 66 (69)
Q Consensus 29 ~~~~l~s~~~d~~v~iwd~~t~~~-~~~~~~h~~~i~~v 66 (69)
...+++.|+.+|.|++||- .+.. ...+++-..+|..|
T Consensus 440 ~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 440 ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeE
Confidence 3457889999999999997 4333 23456665665543
No 338
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=79.98 E-value=3.4 Score=26.40 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=30.4
Q ss_pred ccCCCCCCC--eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 12 NQNPNKSIE--VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 12 ~~~~~~~~~--v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
.+..+|... -+-+-..+....+++++.|...++|.+.+|..+.++
T Consensus 338 ~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 338 MQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred eeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 344455332 223445566678899999999999999987655444
No 339
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=79.35 E-value=4 Score=27.77 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCCCeEEEEECCCCCEEEEe-cCCCcEEEEECC
Q 035276 17 KSIEVLCSTLKDDGITVFSG-GCDKQVKTWPLL 48 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~-~~d~~v~iwd~~ 48 (69)
..+.|.+.+|.+||++|+.+ +..-.-.+||-.
T Consensus 154 ~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 154 TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 35668899999999988665 344466788854
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=79.32 E-value=6 Score=27.74 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=30.4
Q ss_pred hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 035276 10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLL 48 (69)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~ 48 (69)
+.+.+++-..||..++.+.||++|+. .++..+-++++.
T Consensus 610 AKT~lp~lG~pI~~iDvt~DGkwila-Tc~tyLlLi~t~ 647 (794)
T PF08553_consen 610 AKTALPGLGDPIIGIDVTADGKWILA-TCKTYLLLIDTL 647 (794)
T ss_pred hhhcCCCCCCCeeEEEecCCCcEEEE-eecceEEEEEEe
Confidence 46678888999999999999999864 446667888874
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=79.26 E-value=4.6 Score=25.51 Aligned_cols=39 Identities=8% Similarity=0.141 Sum_probs=27.1
Q ss_pred CCeEEEEECCCCC-EEEE-ecCCCcEEEEECCCCCccEEec
Q 035276 19 IEVLCSTLKDDGI-TVFS-GGCDKQVKTWPLLSGGQPVIVA 57 (69)
Q Consensus 19 ~~v~~~~~s~~~~-~l~s-~~~d~~v~iwd~~t~~~~~~~~ 57 (69)
.++.+++.+.|.+ +|+. ...++.+.+||..+|+.+..+.
T Consensus 289 ~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 289 HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 3566788898776 4544 3568899999999998776664
No 342
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=76.85 E-value=4.8 Score=25.50 Aligned_cols=31 Identities=10% Similarity=0.249 Sum_probs=25.3
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
..|..++..+..+.|++...++.|++||+..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999999889999999999999999975
No 343
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.75 E-value=11 Score=25.88 Aligned_cols=50 Identities=4% Similarity=-0.061 Sum_probs=36.4
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEE-EEEe
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIK-TIRL 68 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~-~v~~ 68 (69)
...+.-+-|+|....++.+..+|.+-++.++- .++..++-|...+. ++.|
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-qRlwtip~p~~~v~~sL~W 70 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW-QRLWTIPIPGENVTASLCW 70 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc-ceeEeccCCCCccceeeee
Confidence 44567789999999999999999887777763 55666655555555 5555
No 344
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=75.59 E-value=6.7 Score=27.93 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=29.5
Q ss_pred CCCCCeEEEEECCCCCEEEE-ecCCC-----cEEEEECCC-CCccEEeccCCCc
Q 035276 16 NKSIEVLCSTLKDDGITVFS-GGCDK-----QVKTWPLLS-GGQPVIVAMHDAP 62 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s-~~~d~-----~v~iwd~~t-~~~~~~~~~h~~~ 62 (69)
.+..++.+-+|||||++|+- -+..+ .|.+-|+.+ +..+.++.-....
T Consensus 347 ~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aa 400 (912)
T TIGR02171 347 EDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAA 400 (912)
T ss_pred cCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccccc
Confidence 45667888999999999865 33222 477778865 3334444433333
No 345
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.66 E-value=7.6 Score=26.40 Aligned_cols=35 Identities=6% Similarity=0.021 Sum_probs=27.0
Q ss_pred CeEEEEECCCC---CEEEEecCCCcEEEEECCCCCccE
Q 035276 20 EVLCSTLKDDG---ITVFSGGCDKQVKTWPLLSGGQPV 54 (69)
Q Consensus 20 ~v~~~~~s~~~---~~l~s~~~d~~v~iwd~~t~~~~~ 54 (69)
.+..++|.|++ .+|..-..|..+|+||+.....++
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 45668999975 677777889999999997654443
No 346
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=74.64 E-value=27 Score=25.99 Aligned_cols=51 Identities=12% Similarity=-0.053 Sum_probs=40.4
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
...|.++.|-.++..++.+..+|.|.+-|.++. .......-...|.++.||
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~-~~eivg~vd~GI~aaswS 118 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL-ELEIVGNVDNGISAASWS 118 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc-ceeeeeeccCceEEEeec
Confidence 357889999999999988899999999988773 444455567788888886
No 347
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.36 E-value=7.8 Score=28.40 Aligned_cols=42 Identities=5% Similarity=-0.038 Sum_probs=33.4
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMH 59 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h 59 (69)
..+...+.|.|-...++++.....|++||.+.++++..+..+
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~ 1105 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG 1105 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCC
Confidence 345677889999999999887889999999988776666433
No 348
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=73.10 E-value=19 Score=22.88 Aligned_cols=33 Identities=6% Similarity=-0.009 Sum_probs=27.3
Q ss_pred CCCCeEEEEECCCCCEEEEec-CCCcEEEEECCC
Q 035276 17 KSIEVLCSTLKDDGITVFSGG-CDKQVKTWPLLS 49 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~t 49 (69)
.......+.|.|++++.+.-+ .+++|-+|+.+.
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 345567899999999987766 689999999977
No 349
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=71.01 E-value=14 Score=22.29 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=27.7
Q ss_pred EEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCC
Q 035276 24 STLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHD 60 (69)
Q Consensus 24 ~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~ 60 (69)
+.-..++.+.++++.|+.|+.|+++.++.+-....|.
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 4444566678899999999999998877665555555
No 350
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.82 E-value=16 Score=23.07 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=26.0
Q ss_pred EECCCCCEEEEecC-----CCcEEEEECCCC-CccEEeccCCCcEE
Q 035276 25 TLKDDGITVFSGGC-----DKQVKTWPLLSG-GQPVIVAMHDAPIK 64 (69)
Q Consensus 25 ~~s~~~~~l~s~~~-----d~~v~iwd~~t~-~~~~~~~~h~~~i~ 64 (69)
.|+|||++|+..=. .|.|-+||...+ ..+-++.+|.-...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH 165 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH 165 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc
Confidence 59999999986533 368999998642 22344555544333
No 351
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=69.24 E-value=25 Score=22.42 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=26.1
Q ss_pred CCCeEEEEECCCCCEEEEecC-CCcEEEEECCC
Q 035276 18 SIEVLCSTLKDDGITVFSGGC-DKQVKTWPLLS 49 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~-d~~v~iwd~~t 49 (69)
..+...+++++++++|++++. .+.|.++-++.
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~ 120 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQA 120 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEccCceEEEEEccc
Confidence 444578999999999998874 57899999965
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=68.99 E-value=12 Score=24.43 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=21.2
Q ss_pred CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276 30 GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 30 ~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s 69 (69)
|..|...+.+ .|.+||+++++.+..+.. .+|..+.||
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--~~vk~V~Ws 153 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDV--SAVKYVIWS 153 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEec--CCCcEEEEE
Confidence 6666555444 799999999877776642 236666665
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=68.24 E-value=22 Score=20.86 Aligned_cols=36 Identities=6% Similarity=0.040 Sum_probs=24.2
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccC
Q 035276 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMH 59 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h 59 (69)
+..+++ ...+|+.-+. +.|.+|++.+++.++.+...
T Consensus 231 p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 231 PQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred hhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 344555 3457766555 45999999998877777543
No 354
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=67.90 E-value=18 Score=22.33 Aligned_cols=26 Identities=8% Similarity=0.021 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEE
Q 035276 20 EVLCSTLKDDGITVFSGGCDKQVKTWP 46 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd 46 (69)
....++|.|||+.+++-- .|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v~e~-~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER-SGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEEET-TTEEEEEE
T ss_pred CceEEEEeCCCcEEEEeC-CceEEEEe
Confidence 357899999998777654 89999998
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=67.33 E-value=25 Score=21.16 Aligned_cols=44 Identities=16% Similarity=-0.024 Sum_probs=26.7
Q ss_pred ccCCCCCCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCccEEe
Q 035276 12 NQNPNKSIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 12 ~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
..+++-...+..++|+|+.+.| +.....+.|..++++ |+.+..+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i 59 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI 59 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE
Confidence 3555666678899999986655 566677777777764 5555443
No 356
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=66.89 E-value=15 Score=24.33 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCcEEEEECCCCCccEEec
Q 035276 29 DGITVFSGGCDKQVKTWPLLSGGQPVIVA 57 (69)
Q Consensus 29 ~~~~l~s~~~d~~v~iwd~~t~~~~~~~~ 57 (69)
.+..++.+..|+.++.+|.++|+.+..+.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 44566677789999999999998876543
No 357
>PRK13616 lipoprotein LpqB; Provisional
Probab=66.35 E-value=20 Score=24.27 Aligned_cols=17 Identities=12% Similarity=-0.056 Sum_probs=12.5
Q ss_pred eEEEEECCCCCEEEEec
Q 035276 21 VLCSTLKDDGITVFSGG 37 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~ 37 (69)
...-.|+|||+.|++..
T Consensus 399 ~t~PsWspDG~~lw~v~ 415 (591)
T PRK13616 399 LTRPSWSLDADAVWVVV 415 (591)
T ss_pred CCCceECCCCCceEEEe
Confidence 44568999988776654
No 358
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=66.29 E-value=15 Score=26.55 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=26.4
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPL 47 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~ 47 (69)
...+...++++.+..++.+..++.|.+|--
T Consensus 312 ~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 312 GSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCcceeEEecCCCceEEEecccCcEeeecC
Confidence 344888999999999999999999999973
No 359
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=66.25 E-value=11 Score=25.65 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=21.5
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 22 LCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
.-+.|||.|++|++-...| |.+|.=++
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~ 240 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGES 240 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCcc
Confidence 4589999999999977766 78886544
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=66.08 E-value=1.6 Score=29.82 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=27.3
Q ss_pred CCCCCCeEEEEECC-CCCEEEEec----CCCcEEEEECCCC
Q 035276 15 PNKSIEVLCSTLKD-DGITVFSGG----CDKQVKTWPLLSG 50 (69)
Q Consensus 15 ~~~~~~v~~~~~s~-~~~~l~s~~----~d~~v~iwd~~t~ 50 (69)
+++..+..+++|++ |.++|+.|- .|..+.+||+.++
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ 139 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSL 139 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccc
Confidence 45677788899999 566676652 3568999999875
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=66.03 E-value=17 Score=23.31 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLL 48 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~ 48 (69)
.+.+.++.|+.+. .|+.-..||.+++||+.
T Consensus 80 ~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 80 SGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 3678889998754 45556789999999985
No 362
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=64.83 E-value=7.7 Score=25.08 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=17.7
Q ss_pred EEECCCCCEEE-EecCCCc--EEEEECCCC
Q 035276 24 STLKDDGITVF-SGGCDKQ--VKTWPLLSG 50 (69)
Q Consensus 24 ~~~s~~~~~l~-s~~~d~~--v~iwd~~t~ 50 (69)
-+|+|||++|+ +...|+. |.+.|+..+
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 47999999875 4455664 455565553
No 363
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=64.75 E-value=22 Score=23.42 Aligned_cols=33 Identities=6% Similarity=-0.111 Sum_probs=25.3
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG 50 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~ 50 (69)
......++|.||++.|++-...+.|++++..++
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 344678999999998887766788998876543
No 364
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=63.47 E-value=20 Score=25.97 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=32.9
Q ss_pred CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEE
Q 035276 29 DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66 (69)
Q Consensus 29 ~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v 66 (69)
+++.+.+|...|+|-+-|.++-+.+.++..|.+.|...
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 57888999999999999999877788899999888754
No 365
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=62.71 E-value=12 Score=16.12 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=20.5
Q ss_pred CCCEEEEecCCCcEEEEECCCCCccEE
Q 035276 29 DGITVFSGGCDKQVKTWPLLSGGQPVI 55 (69)
Q Consensus 29 ~~~~l~s~~~d~~v~iwd~~t~~~~~~ 55 (69)
.|.+++.+..+.-+.+.|+.....+..
T Consensus 10 ~g~yaYva~~~~Gl~IvDISnPs~P~~ 36 (42)
T PF08309_consen 10 SGNYAYVADGNNGLVIVDISNPSNPVL 36 (42)
T ss_pred ECCEEEEEeCCCCEEEEECCCCCCCEE
Confidence 477888887777799999987655543
No 366
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=61.18 E-value=36 Score=20.94 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=30.3
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc
Q 035276 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM 58 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~ 58 (69)
+.++...++|.+|+|+..-..|.+.|-.+|+.+..+.+
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG 183 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGG 183 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCC
Confidence 56788888999999998888888888888776655543
No 367
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=61.14 E-value=31 Score=24.97 Aligned_cols=32 Identities=6% Similarity=0.021 Sum_probs=26.5
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCC
Q 035276 20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG 51 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~ 51 (69)
.+..+.-.|.++.++.++.|+.|.+|+..+..
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 35567777999999999999999999987643
No 368
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.10 E-value=39 Score=21.28 Aligned_cols=41 Identities=15% Similarity=0.030 Sum_probs=26.7
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
+-...+.++.|+|+.+.|++-.....--++=...|+.+..+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti 123 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI 123 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe
Confidence 33445788999999999887666665444433445555443
No 369
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.74 E-value=28 Score=21.78 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=26.8
Q ss_pred EEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 24 STLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 24 ~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
....+++..++.++.|+.....|..+..++.+.
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 346678999999999999999999887666543
No 370
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=60.59 E-value=23 Score=19.71 Aligned_cols=26 Identities=12% Similarity=0.099 Sum_probs=17.2
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 22 LCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
..++||.||+..+. . +..|.|.|..+
T Consensus 8 ~~l~WS~Dg~laV~-t-~~~v~IL~~~~ 33 (173)
T PF12657_consen 8 NALAWSEDGQLAVA-T-GESVHILDPQT 33 (173)
T ss_pred cCeeECCCCCEEEE-c-CCeEEEEeccC
Confidence 56899999985443 3 44577775443
No 371
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=60.51 E-value=22 Score=21.94 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=17.6
Q ss_pred CCCEEEEecCCCcEEEEECCCCCcc
Q 035276 29 DGITVFSGGCDKQVKTWPLLSGGQP 53 (69)
Q Consensus 29 ~~~~l~s~~~d~~v~iwd~~t~~~~ 53 (69)
++..++.++.++.+..+|..+|+.+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKEL 128 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEe
Confidence 3556777777788888887776654
No 372
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=60.06 E-value=23 Score=23.11 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 29 DGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 29 ~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
.+..|+.++.|+.+..+|..+|+.+...
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 4567888889999999999998876544
No 373
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=59.52 E-value=22 Score=23.72 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=33.9
Q ss_pred hhhhhccCCCCCCC-eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec
Q 035276 7 AAVATNQNPNKSIE-VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA 57 (69)
Q Consensus 7 ~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~ 57 (69)
.|+... +..|... -..+.|...+++|+-+.-=| |++.++.++.+.+.+.
T Consensus 265 mavere-lek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 265 MAVERE-LEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhHHhh-HhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 344433 3334443 45688999999998887766 8999999987766653
No 374
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=59.02 E-value=34 Score=21.45 Aligned_cols=27 Identities=7% Similarity=-0.106 Sum_probs=21.2
Q ss_pred CCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 30 GITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 30 ~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
+..|+.+..|+.+...|..+|+.+...
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 566788889999999999998765443
No 375
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=58.59 E-value=42 Score=20.85 Aligned_cols=50 Identities=16% Similarity=0.059 Sum_probs=25.7
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc-cEEe-ccCCCcEEEEEeC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ-PVIV-AMHDAPIKTIRLL 69 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~-~~~~-~~h~~~i~~v~~s 69 (69)
.+.+..+..++||++++.+....-..-||- +.. -... ......|+.+.|+
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~--G~~~w~~~~r~~~~riq~~gf~ 195 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDP--GQTTWQPHNRNSSRRIQSMGFS 195 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-T--T-SS-EEEE--SSS-EEEEEE-
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecC--CCccceEEccCccceehhceec
Confidence 456778889999999988766666667763 322 2222 2345667777663
No 376
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=58.14 E-value=24 Score=23.02 Aligned_cols=28 Identities=21% Similarity=0.018 Sum_probs=18.0
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
|..+-|++++++++-.+.+ .+.+++...
T Consensus 147 vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred CcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 7889999999998877655 567766543
No 377
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=58.11 E-value=4.5 Score=15.37 Aligned_cols=7 Identities=29% Similarity=0.430 Sum_probs=5.5
Q ss_pred ECCCCCE
Q 035276 26 LKDDGIT 32 (69)
Q Consensus 26 ~s~~~~~ 32 (69)
|||+|+.
T Consensus 8 FSp~Grl 14 (23)
T PF10584_consen 8 FSPDGRL 14 (23)
T ss_dssp BBTTSSB
T ss_pred ECCCCeE
Confidence 8888874
No 378
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=57.99 E-value=14 Score=23.85 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=15.6
Q ss_pred EECCCCCEEEEecC-C--CcEEEEECCCCCc
Q 035276 25 TLKDDGITVFSGGC-D--KQVKTWPLLSGGQ 52 (69)
Q Consensus 25 ~~s~~~~~l~s~~~-d--~~v~iwd~~t~~~ 52 (69)
+|++||++|+-++. | ..+...|+.+++.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i 72 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEI 72 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEE
Confidence 79999987765543 4 4677778888543
No 379
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=57.64 E-value=13 Score=23.68 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
.|..-+.++.|+.|.+.+++ ..|-.|.+|+++-
T Consensus 170 aH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i 202 (460)
T COG5170 170 AHPYHINSISFNSDKETLLS-ADDLRINLWNLEI 202 (460)
T ss_pred cceeEeeeeeecCchheeee-ccceeeeeccccc
Confidence 36666888999999998876 4667899999865
No 380
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.24 E-value=58 Score=23.53 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=33.5
Q ss_pred CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec-cCCCcEEEE
Q 035276 14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA-MHDAPIKTI 66 (69)
Q Consensus 14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~-~h~~~i~~v 66 (69)
+..|..++.+..|++-...+++++.. -+.+||....+....+. +|......+
T Consensus 210 ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 210 LDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKEMLVF 262 (933)
T ss_pred eccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeEEEEEE
Confidence 44567778888898766656665555 48999986544444555 666554443
No 381
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=57.23 E-value=42 Score=20.83 Aligned_cols=47 Identities=9% Similarity=-0.094 Sum_probs=29.5
Q ss_pred eEEEEECCCCCEEEEecCCC-cEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 21 VLCSTLKDDGITVFSGGCDK-QVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d~-~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.-.++...+|.+.+++..++ .|.+|+-. |+.+..+.-....+.++.|
T Consensus 215 PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 215 PDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 34466777787665555554 89999876 6766655444344555444
No 382
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.67 E-value=73 Score=23.06 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=36.8
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC-ccEEeccCCCcEEEEEeC
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG-QPVIVAMHDAPIKTIRLL 69 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~-~~~~~~~h~~~i~~v~~s 69 (69)
....||+.++|..+++.++-...-..|..|.+.... ....+..|.....|..|+
T Consensus 169 ~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~ 223 (933)
T KOG2114|consen 169 RGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFS 223 (933)
T ss_pred cCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecC
Confidence 456789999999998874444445568999987433 134466777777776653
No 383
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=54.52 E-value=22 Score=16.36 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCEEEEec-----CCCcEEEEECCCCCcc
Q 035276 20 EVLCSTLKDDGITVFSGG-----CDKQVKTWPLLSGGQP 53 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~-----~d~~v~iwd~~t~~~~ 53 (69)
.+.+++.-|||+.|+.|. .+....+..+.+...+
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsL 40 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSL 40 (55)
T ss_pred ceEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCc
Confidence 356788999999998874 3334555556553333
No 384
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.72 E-value=22 Score=25.74 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.5
Q ss_pred CCCCCEEEEecCCCcEEEEECCCCC
Q 035276 27 KDDGITVFSGGCDKQVKTWPLLSGG 51 (69)
Q Consensus 27 s~~~~~l~s~~~d~~v~iwd~~t~~ 51 (69)
++++..++++..|+.+..||...+.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCc
Confidence 7789999999999999999998763
No 385
>PRK10115 protease 2; Provisional
Probab=52.95 E-value=74 Score=22.01 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=22.9
Q ss_pred eEEEEECCCCCEEEEec-----CCCcEEEEECCCCC
Q 035276 21 VLCSTLKDDGITVFSGG-----CDKQVKTWPLLSGG 51 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~-----~d~~v~iwd~~t~~ 51 (69)
+..+.|+||+++|+-+- ....+++.|+.+|.
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~ 164 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN 164 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC
Confidence 55688999999886542 23478899998875
No 386
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=52.71 E-value=22 Score=16.18 Aligned_cols=8 Identities=13% Similarity=-0.068 Sum_probs=3.1
Q ss_pred eEEEEECC
Q 035276 21 VLCSTLKD 28 (69)
Q Consensus 21 v~~~~~s~ 28 (69)
|.++.-+|
T Consensus 14 v~~v~~sp 21 (57)
T PF10411_consen 14 VESVSPSP 21 (57)
T ss_dssp CEEEEE-S
T ss_pred eeEEEcCC
Confidence 44444444
No 387
>PF13983 YsaB: YsaB-like lipoprotein
Probab=51.58 E-value=19 Score=17.56 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=10.5
Q ss_pred EEEEECCCCCEEE
Q 035276 22 LCSTLKDDGITVF 34 (69)
Q Consensus 22 ~~~~~s~~~~~l~ 34 (69)
.-|+|.+||++|-
T Consensus 61 FvCSFD~dGqFLH 73 (77)
T PF13983_consen 61 FVCSFDADGQFLH 73 (77)
T ss_pred eEEeECCCCcEEE
Confidence 5688999999873
No 388
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=50.86 E-value=15 Score=22.32 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=8.3
Q ss_pred ECCCCCEEEEecCCCcEE
Q 035276 26 LKDDGITVFSGGCDKQVK 43 (69)
Q Consensus 26 ~s~~~~~l~s~~~d~~v~ 43 (69)
|+.+|+.++++..++-++
T Consensus 266 ~~~~G~LvAs~~Qegl~r 283 (286)
T PRK10526 266 YTQDGVLVASTVQEGVMR 283 (286)
T ss_pred ECCCCCEEEEEEeeEEEE
Confidence 444444444444444333
No 389
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=49.93 E-value=16 Score=24.62 Aligned_cols=45 Identities=7% Similarity=0.076 Sum_probs=35.4
Q ss_pred EEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 24 STLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 24 ~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
+.|++....++-+...+.+.+|+-.+.+.+.....|.+.+.+++|
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av 167 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAV 167 (615)
T ss_pred HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEe
Confidence 679998888888889999999998875555555558887777665
No 390
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=49.69 E-value=12 Score=19.17 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=12.7
Q ss_pred EEECCCCCEEEEecCCC
Q 035276 24 STLKDDGITVFSGGCDK 40 (69)
Q Consensus 24 ~~~s~~~~~l~s~~~d~ 40 (69)
--|+++|+.++++..++
T Consensus 86 ~l~~~~G~LvAs~~Q~~ 102 (104)
T cd03444 86 RIFTRDGELVASVAQEG 102 (104)
T ss_pred EEECCCCCEEEEEEEee
Confidence 35888888888876654
No 391
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=49.69 E-value=30 Score=21.43 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG 50 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~ 50 (69)
...+....|+|+|+.++-.. ++.|.++++.++
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence 45577889999999887654 567999988775
No 392
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=48.94 E-value=67 Score=20.31 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=27.6
Q ss_pred CeEEEEECCCCCEEEEecC---CCcEEEEECCCCCccEEe
Q 035276 20 EVLCSTLKDDGITVFSGGC---DKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~---d~~v~iwd~~t~~~~~~~ 56 (69)
....++++++++.++.+.. +.++.+.|..+.+.....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 3467899999998877665 678888888876655443
No 393
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=46.70 E-value=42 Score=23.44 Aligned_cols=30 Identities=7% Similarity=0.016 Sum_probs=25.5
Q ss_pred CCCeEEEEECC-CCCEEEEecCCCcEEEEEC
Q 035276 18 SIEVLCSTLKD-DGITVFSGGCDKQVKTWPL 47 (69)
Q Consensus 18 ~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~ 47 (69)
..+..+++|+| +.+.++.-...|.-.+||+
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEe
Confidence 44677899999 5568888899999999999
No 394
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.20 E-value=54 Score=20.68 Aligned_cols=33 Identities=3% Similarity=-0.040 Sum_probs=28.2
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG 50 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~ 50 (69)
....-.++|+|..+.|+.+-+...+.+|.+..+
T Consensus 180 N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 180 NKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred CcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence 566788999999999999999999999988643
No 395
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=45.77 E-value=71 Score=22.37 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=27.6
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPL 47 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~ 47 (69)
...+..+.|.++++.++..-.+|.|++||.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEec
Confidence 567888999999999999999999999999
No 396
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=45.50 E-value=76 Score=19.99 Aligned_cols=29 Identities=14% Similarity=-0.023 Sum_probs=26.0
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
+.++++++|++++++-+....|-.|.+..
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCC
Confidence 67899999999999999989999999865
No 397
>PRK02888 nitrous-oxide reductase; Validated
Probab=45.32 E-value=42 Score=23.23 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=25.5
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
...+..+|+++|....+-..|..|..||+.+
T Consensus 375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3456788999998777778999999999876
No 398
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=43.67 E-value=26 Score=14.83 Aligned_cols=23 Identities=17% Similarity=0.266 Sum_probs=12.5
Q ss_pred CCCCEEEEecCCC------cEEEEECCCC
Q 035276 28 DDGITVFSGGCDK------QVKTWPLLSG 50 (69)
Q Consensus 28 ~~~~~l~s~~~d~------~v~iwd~~t~ 50 (69)
.+++.++.|+.+. .+.+||+++.
T Consensus 11 ~~~~i~v~GG~~~~~~~~~d~~~~d~~~~ 39 (49)
T PF13418_consen 11 GDNSIYVFGGRDSSGSPLNDLWIFDIETN 39 (49)
T ss_dssp -TTEEEEE--EEE-TEE---EEEEETTTT
T ss_pred eCCeEEEECCCCCCCcccCCEEEEECCCC
Confidence 4566666666543 5778888774
No 399
>TIGR02781 VirB9 P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system. VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein.
Probab=43.40 E-value=72 Score=19.06 Aligned_cols=48 Identities=10% Similarity=0.022 Sum_probs=27.7
Q ss_pred hhhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE
Q 035276 6 AAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV 54 (69)
Q Consensus 6 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~ 54 (69)
+.+...........+|..+.|+|+.-+-+.+.... +..-.+..++.+.
T Consensus 15 a~A~~~P~~~~~D~Ri~~~~Y~p~~v~~V~~~~g~-~T~I~f~~gE~I~ 62 (243)
T TIGR02781 15 AYALNTPRGSSYDSRIRTVVYNPDDVVRVVTSYGY-STTIEFADDETIK 62 (243)
T ss_pred hHHhhCCCCCCCCCceEEEEcCCCCEEEEEEECCE-EEEEEeCCCCEEE
Confidence 33444555555677888888888877665544433 2222455555443
No 400
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=42.86 E-value=53 Score=21.71 Aligned_cols=35 Identities=3% Similarity=-0.025 Sum_probs=27.4
Q ss_pred CCCeEEEEECCCCCEEEE-ecCCCcEEEEECCCCCc
Q 035276 18 SIEVLCSTLKDDGITVFS-GGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s-~~~d~~v~iwd~~t~~~ 52 (69)
.+-|.++-.|-|.++|+. +...|-|+.||+++...
T Consensus 311 P~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n 346 (476)
T KOG0918|consen 311 PGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKN 346 (476)
T ss_pred chhhheeEEeecCcEEEEEeeeecceeeeccCCCCC
Confidence 334678889999999965 45789999999987554
No 401
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=42.73 E-value=97 Score=20.39 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=25.3
Q ss_pred eEEEEECC-CCCEEEEecCCCcEEEEECCCCCccEEeccCC
Q 035276 21 VLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHD 60 (69)
Q Consensus 21 v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~ 60 (69)
+.++.+.+ ++..++++..-..|-..|..+++....+..|.
T Consensus 273 ~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 273 INSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred cCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 57789999 56666666655578888877876656665553
No 402
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=41.75 E-value=71 Score=22.59 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=25.6
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEecCCCcEEE
Q 035276 13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKT 44 (69)
Q Consensus 13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 44 (69)
+...+..+|..+..++..+.|+.++.++.+++
T Consensus 458 qvf~~~~pI~~m~Ls~~~~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 458 QVFPDAEPIRSMQLSSKRGSLYVGSRSGVVQV 489 (737)
T ss_pred eecCCCCceeEEEecccCCeEEEEccCcEEEe
Confidence 34455678999999998888999998886665
No 403
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=41.56 E-value=1.1e+02 Score=20.87 Aligned_cols=36 Identities=17% Similarity=0.069 Sum_probs=29.9
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCC-cEEEEECCCCC
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDK-QVKTWPLLSGG 51 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~-~v~iwd~~t~~ 51 (69)
++...|.-..+.-+++-++.|..|+ .+-++|..+++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e 393 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE 393 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce
Confidence 4666688788888888888898888 99999998865
No 404
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=41.05 E-value=9.7 Score=25.15 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=9.7
Q ss_pred ecCCCcEEEEECCCCCc
Q 035276 36 GGCDKQVKTWPLLSGGQ 52 (69)
Q Consensus 36 ~~~d~~v~iwd~~t~~~ 52 (69)
+..+|.|++||+.....
T Consensus 148 ~~~~GVVrvWDvkd~~l 164 (533)
T PF00843_consen 148 GGRNGVVRVWDVKDPSL 164 (533)
T ss_dssp --SSSEE-SEE-S-GGG
T ss_pred CCCCCeEEEEecCCHHH
Confidence 56789999999987543
No 405
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=40.92 E-value=34 Score=22.45 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.4
Q ss_pred CCCCCEEEEecCCCcEEEEECCC
Q 035276 27 KDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 27 s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
-.-|-.|++++.|..+.+||+..
T Consensus 338 ~~~Gy~lvtgGTDnHlvLvDLr~ 360 (477)
T KOG2467|consen 338 ISRGYKLVTGGTDNHLVLVDLRP 360 (477)
T ss_pred HHcCceEecCCccceEEEEeccc
Confidence 33466799999999999999975
No 406
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=39.31 E-value=41 Score=23.14 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=16.9
Q ss_pred CCCCCeEEEEECCCCCEEEEe
Q 035276 16 NKSIEVLCSTLKDDGITVFSG 36 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~ 36 (69)
.+.+++...+|+||++.+..+
T Consensus 551 P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 551 PIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred CCcceeecceeCCCCceEEEE
Confidence 345678889999999988765
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=38.05 E-value=89 Score=18.59 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCEEEEec---CCCcEEEEECC
Q 035276 20 EVLCSTLKDDGITVFSGG---CDKQVKTWPLL 48 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~---~d~~v~iwd~~ 48 (69)
+|..+.++|||.+++.-. .++.|.+--+.
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 799999999999875433 45677776553
No 408
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=37.91 E-value=55 Score=19.86 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=17.3
Q ss_pred CCCEEEEecC--CCcEEEEECCCCCccE
Q 035276 29 DGITVFSGGC--DKQVKTWPLLSGGQPV 54 (69)
Q Consensus 29 ~~~~l~s~~~--d~~v~iwd~~t~~~~~ 54 (69)
+|..+.+.+. ...|++||+.+|+.+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~ 82 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIF 82 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEE
Confidence 3445555553 3489999999877643
No 409
>PF13964 Kelch_6: Kelch motif
Probab=37.08 E-value=40 Score=14.35 Aligned_cols=22 Identities=23% Similarity=0.364 Sum_probs=13.4
Q ss_pred CCCEEEEecCC------CcEEEEECCCC
Q 035276 29 DGITVFSGGCD------KQVKTWPLLSG 50 (69)
Q Consensus 29 ~~~~l~s~~~d------~~v~iwd~~t~ 50 (69)
+++..+.|+.+ ..+.+||.++.
T Consensus 11 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 38 (50)
T PF13964_consen 11 GGKIYVFGGYDNSGKYSNDVERYDPETN 38 (50)
T ss_pred CCEEEEECCCCCCCCccccEEEEcCCCC
Confidence 44544555543 36788888773
No 410
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=36.98 E-value=1e+02 Score=18.99 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=24.8
Q ss_pred CCCCeEEEEECCCCCEEEEec------CCCcEEEEECCCC
Q 035276 17 KSIEVLCSTLKDDGITVFSGG------CDKQVKTWPLLSG 50 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~------~d~~v~iwd~~t~ 50 (69)
-.+.|.++.|..+.+.++.|. ....+..||....
T Consensus 35 i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 356789999986666666653 4567889998763
No 411
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=36.56 E-value=32 Score=18.57 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=16.3
Q ss_pred EECCCCCEEEEecCCCcEEEEE
Q 035276 25 TLKDDGITVFSGGCDKQVKTWP 46 (69)
Q Consensus 25 ~~s~~~~~l~s~~~d~~v~iwd 46 (69)
.|||||++|-..-.|..+.-.|
T Consensus 74 vfSpDG~~lSFTYNDhVmhe~d 95 (122)
T PF12566_consen 74 VFSPDGSWLSFTYNDHVMHELD 95 (122)
T ss_pred EECCCCCEEEEEecchhhcccc
Confidence 5999999987777777655443
No 412
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms]
Probab=35.78 E-value=1.2e+02 Score=22.43 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=19.8
Q ss_pred EEEEecCCCcEEEEECCCCCccEEeccC
Q 035276 32 TVFSGGCDKQVKTWPLLSGGQPVIVAMH 59 (69)
Q Consensus 32 ~l~s~~~d~~v~iwd~~t~~~~~~~~~h 59 (69)
+|+ +-.|.-|.|||+++++.+..+.+|
T Consensus 964 yii-a~~~~fIeI~~~~t~eli~~i~~~ 990 (1029)
T KOG4305|consen 964 YII-AFGDNFIEIRDLETGELIQIILGQ 990 (1029)
T ss_pred eEE-EecCceEEEEecccceeeEEeecc
Confidence 554 345778999999998877665554
No 413
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=35.56 E-value=89 Score=22.15 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=20.6
Q ss_pred CCCEEEE-ecCCCcEEEEECCCCCccEE
Q 035276 29 DGITVFS-GGCDKQVKTWPLLSGGQPVI 55 (69)
Q Consensus 29 ~~~~l~s-~~~d~~v~iwd~~t~~~~~~ 55 (69)
.+..++. +..|+.++-+|.++|+.+-.
T Consensus 690 agglvF~~gt~d~~l~A~D~~tGk~lW~ 717 (764)
T TIGR03074 690 AGGLVFIGATQDNYLRAYDLSTGKELWK 717 (764)
T ss_pred cCCEEEEEeCCCCEEEEEECCCCceeeE
Confidence 3555655 67899999999999887543
No 414
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=35.14 E-value=30 Score=20.51 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=13.5
Q ss_pred EEECCCCCEEEEecCCCcE
Q 035276 24 STLKDDGITVFSGGCDKQV 42 (69)
Q Consensus 24 ~~~s~~~~~l~s~~~d~~v 42 (69)
--|+.+|+.+++...++-+
T Consensus 252 ~l~d~~G~lvAs~~Qe~l~ 270 (271)
T TIGR00189 252 KIFTRDGVLIASTVQEGLV 270 (271)
T ss_pred EEECCCCCEEEEEEeeeec
Confidence 3577888888887776644
No 415
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.94 E-value=1.1e+02 Score=23.30 Aligned_cols=34 Identities=6% Similarity=0.024 Sum_probs=30.2
Q ss_pred CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
.+..+|..+........+++-+..++|++||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 5677899999998888899999999999999976
No 416
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=33.97 E-value=1.4e+02 Score=21.11 Aligned_cols=36 Identities=14% Similarity=-0.056 Sum_probs=29.5
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc
Q 035276 18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP 53 (69)
Q Consensus 18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~ 53 (69)
...|.++....-+..++..-.||+|.++|-.+-+.+
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~ 294 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKEL 294 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhh
Confidence 456788888888888999999999999998775443
No 417
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=33.45 E-value=54 Score=17.48 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=13.7
Q ss_pred CcEEEEECCCCCccEEe
Q 035276 40 KQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 40 ~~v~iwd~~t~~~~~~~ 56 (69)
-.|.+||+..|.++.++
T Consensus 41 E~V~I~Nv~NG~Rf~TY 57 (111)
T cd06919 41 EKVLVVNVNNGARFETY 57 (111)
T ss_pred CEEEEEECCCCcEEEEE
Confidence 48999999998886543
No 418
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.14 E-value=17 Score=27.12 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=22.3
Q ss_pred eEEEEECC-CCC-EEEEecCCCcEEEEECCCC
Q 035276 21 VLCSTLKD-DGI-TVFSGGCDKQVKTWPLLSG 50 (69)
Q Consensus 21 v~~~~~s~-~~~-~l~s~~~d~~v~iwd~~t~ 50 (69)
+++++++. .|. ++..-..|+.+|+|++.+.
T Consensus 272 atsla~seV~gd~fifaL~rDg~LR~Wsv~t~ 303 (1480)
T KOG4521|consen 272 ATSLAKSEVQGDNFIFALTRDGWLRAWSVETK 303 (1480)
T ss_pred HHHHHHHhhcCceEEEEEecCCeEEeeehhhh
Confidence 34456666 344 6777889999999999884
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=31.82 E-value=1.8e+02 Score=20.32 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=24.6
Q ss_pred CCCCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEEe
Q 035276 27 KDDGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIRL 68 (69)
Q Consensus 27 s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~~ 68 (69)
+.-++..+.-.....+.|||...+...... -.....|..+.|
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDW 80 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDW 80 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeecee
Confidence 334444444555668999999875432221 134566777766
No 420
>PF15644 Tox-PL: Papain fold toxin 1; PDB: 3B21_A.
Probab=30.10 E-value=82 Score=16.22 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=18.5
Q ss_pred eEEEEECCC--CCEEEEecCCCcEEEEECCCCC
Q 035276 21 VLCSTLKDD--GITVFSGGCDKQVKTWPLLSGG 51 (69)
Q Consensus 21 v~~~~~s~~--~~~l~s~~~d~~v~iwd~~t~~ 51 (69)
+..+.|... +..+..-..+|.|++||-++|+
T Consensus 77 ~v~~~~~gg~~gHa~nvv~~~G~i~~~D~Q~G~ 109 (111)
T PF15644_consen 77 IVSVSWKGGGPGHAFNVVNQNGKIVFLDPQSGK 109 (111)
T ss_dssp EEEETT-----TTEEEEEEE-SSEEEEBTTTTB
T ss_pred EEEEEEeccccceEEEEEeCCCeEEEEeCCCCC
Confidence 445555432 4555444788999999998864
No 421
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=30.02 E-value=83 Score=15.87 Aligned_cols=15 Identities=20% Similarity=0.014 Sum_probs=10.1
Q ss_pred eEEEEECCCCCEEEE
Q 035276 21 VLCSTLKDDGITVFS 35 (69)
Q Consensus 21 v~~~~~s~~~~~l~s 35 (69)
...+++++|+.+|+.
T Consensus 59 pNGVals~d~~~vlv 73 (89)
T PF03088_consen 59 PNGVALSPDESFVLV 73 (89)
T ss_dssp EEEEEE-TTSSEEEE
T ss_pred cCeEEEcCCCCEEEE
Confidence 356789999987644
No 422
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=29.92 E-value=66 Score=17.57 Aligned_cols=17 Identities=12% Similarity=0.088 Sum_probs=13.7
Q ss_pred CcEEEEECCCCCccEEe
Q 035276 40 KQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 40 ~~v~iwd~~t~~~~~~~ 56 (69)
-.|.+||+..|.++.++
T Consensus 42 E~V~V~Nv~NG~Rf~TY 58 (126)
T PRK05449 42 EKVQIVNVNNGARFETY 58 (126)
T ss_pred CEEEEEECCCCcEEEEE
Confidence 48999999999887543
No 423
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.71 E-value=1.6e+02 Score=20.44 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=27.9
Q ss_pred hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 035276 11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLL 48 (69)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~ 48 (69)
.+.+|+...+|..+.-+.||++|+. .++..+-+-++.
T Consensus 464 KTAlPgLG~~I~hVdvtadGKwil~-Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 464 KTALPGLGDAIKHVDVTADGKWILA-TCKTYLLLIDTL 500 (644)
T ss_pred hhcccccCCceeeEEeeccCcEEEE-ecccEEEEEEEe
Confidence 4567788889999999999998874 445566666663
No 424
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=28.92 E-value=1.3e+02 Score=17.91 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=20.1
Q ss_pred CEEEEecCCCcEEEEECCCCCc--cEEeccCCCcEEEEEe
Q 035276 31 ITVFSGGCDKQVKTWPLLSGGQ--PVIVAMHDAPIKTIRL 68 (69)
Q Consensus 31 ~~l~s~~~d~~v~iwd~~t~~~--~~~~~~h~~~i~~v~~ 68 (69)
..|..+....+|.+||+...++ +..+. .-+.|..+.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y 67 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVY 67 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEe
Confidence 4444445566799999985333 22332 2244555444
No 425
>PF02870 Methyltransf_1N: 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; InterPro: IPR008332 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources []. This group of proteins are characterised by having an N-terminal ribonuclease-like domain associated with 6-O-methylguanine DNA methyltransferase activity (IPR001497 from INTERPRO).; GO: 0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A.
Probab=28.86 E-value=53 Score=15.48 Aligned_cols=20 Identities=5% Similarity=-0.200 Sum_probs=13.9
Q ss_pred ECCCCCEEEEecCCCcEEEE
Q 035276 26 LKDDGITVFSGGCDKQVKTW 45 (69)
Q Consensus 26 ~s~~~~~l~s~~~d~~v~iw 45 (69)
=+|-|..++.++..+-..++
T Consensus 8 ~sPlG~l~l~a~e~gL~~i~ 27 (77)
T PF02870_consen 8 DSPLGPLLLAASEKGLCGID 27 (77)
T ss_dssp EETTEEEEEEEETTCEEEEE
T ss_pred cCCCeEEEEEEECCeEEEEE
Confidence 35678878888888755554
No 426
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=28.81 E-value=71 Score=17.45 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=13.7
Q ss_pred CcEEEEECCCCCccEEe
Q 035276 40 KQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 40 ~~v~iwd~~t~~~~~~~ 56 (69)
-.|.+||+..|.++.++
T Consensus 42 E~V~V~Nv~NG~Rf~TY 58 (126)
T TIGR00223 42 EKVDIVNVNNGKRFSTY 58 (126)
T ss_pred CEEEEEECCCCcEEEEE
Confidence 48999999998886543
No 427
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.63 E-value=43 Score=24.58 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=24.4
Q ss_pred EEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 33 VFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 33 l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
++.|-.+|.|.+|- ++|..+....-|..+|..+++
T Consensus 103 VavGt~sGyV~FYT-e~Gvllf~Q~~~edPVl~lk~ 137 (1244)
T KOG2727|consen 103 VAVGTSSGYVLFYT-ETGVLLFKQIVHEDPVLKLKV 137 (1244)
T ss_pred EEEecccceEEEEe-cccHHHHHHHhccCccceEEE
Confidence 88899999999985 566444333457777766654
No 428
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=28.41 E-value=1.5e+02 Score=18.28 Aligned_cols=32 Identities=22% Similarity=0.122 Sum_probs=23.5
Q ss_pred EEEECCCCCEEEEecCCC--cEEEEECCCCCccE
Q 035276 23 CSTLKDDGITVFSGGCDK--QVKTWPLLSGGQPV 54 (69)
Q Consensus 23 ~~~~s~~~~~l~s~~~d~--~v~iwd~~t~~~~~ 54 (69)
.+.|..++..+-+.+.-| .|+.+|+.+++...
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~ 82 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ 82 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE
Confidence 467767777777777655 89999999987543
No 429
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=28.38 E-value=1.4e+02 Score=22.59 Aligned_cols=28 Identities=4% Similarity=-0.159 Sum_probs=22.1
Q ss_pred CCCCeEEEEECCCCCEEEEecCCCcEEE
Q 035276 17 KSIEVLCSTLKDDGITVFSGGCDKQVKT 44 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~i 44 (69)
-...|...+|+||.+.++-...++++.+
T Consensus 108 vd~GI~aaswS~Dee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEELLALITGRQTLLF 135 (1265)
T ss_pred ccCceEEEeecCCCcEEEEEeCCcEEEE
Confidence 3567888999999999877777776655
No 430
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=27.89 E-value=1e+02 Score=20.29 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=21.3
Q ss_pred CCeEEEEECCCC-CEEEEecCCCcEEEE
Q 035276 19 IEVLCSTLKDDG-ITVFSGGCDKQVKTW 45 (69)
Q Consensus 19 ~~v~~~~~s~~~-~~l~s~~~d~~v~iw 45 (69)
..+....|--|| ..|++++.||.|+-|
T Consensus 15 A~vv~~DYR~dG~~~lI~csvdGeVrGy 42 (431)
T PF14782_consen 15 AGVVVADYRMDGKPQLICCSVDGEVRGY 42 (431)
T ss_pred heeeeeccccCCCceEEEEEcCCEEEEe
Confidence 345566777787 578899999999999
No 431
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=27.14 E-value=91 Score=17.06 Aligned_cols=26 Identities=19% Similarity=0.380 Sum_probs=13.1
Q ss_pred EECCCCCEEEEecCCCcEEEEECCCCC
Q 035276 25 TLKDDGITVFSGGCDKQVKTWPLLSGG 51 (69)
Q Consensus 25 ~~s~~~~~l~s~~~d~~v~iwd~~t~~ 51 (69)
.++.++.-.++-..++.|..|+. .|.
T Consensus 89 pice~~~~yYcl~~~g~V~~W~~-~g~ 114 (132)
T PF14567_consen 89 PICEDGGDYYCLDQEGEVVYWSH-NGE 114 (132)
T ss_dssp EEEEETTEEEEE-TTS-EEEE------
T ss_pred eEEecCCcEEEEeCCCeEEEecC-CCC
Confidence 34555555555568999999997 544
No 432
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=26.74 E-value=56 Score=12.79 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=16.3
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEE
Q 035276 20 EVLCSTLKDDGITVFSGGCDKQVKTW 45 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~s~~~d~~v~iw 45 (69)
.|.+++.+ .++++.+...+.+|+|
T Consensus 3 ~i~aia~g--~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAG--DSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEcc--CCEEEEEeCCCeEEec
Confidence 35566665 3577777777888876
No 433
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=26.54 E-value=51 Score=17.21 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=10.6
Q ss_pred CeEEEEECCCCCEEE
Q 035276 20 EVLCSTLKDDGITVF 34 (69)
Q Consensus 20 ~v~~~~~s~~~~~l~ 34 (69)
.+-.-.|||||+.+.
T Consensus 14 v~AAGefs~DGkLv~ 28 (109)
T COG4831 14 VMAAGEFSPDGKLVE 28 (109)
T ss_pred eeEeceeCCCCceEE
Confidence 344456999999774
No 434
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=25.95 E-value=96 Score=20.32 Aligned_cols=20 Identities=5% Similarity=0.121 Sum_probs=17.1
Q ss_pred CCEEEEecCCCcEEEEECCC
Q 035276 30 GITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 30 ~~~l~s~~~d~~v~iwd~~t 49 (69)
...|+.|+..|.++||+-..
T Consensus 37 ~d~IivGS~~G~LrIy~P~~ 56 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSG 56 (418)
T ss_pred ccEEEEeccccEEEEEccCC
Confidence 45789999999999999854
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=25.87 E-value=1.2e+02 Score=21.10 Aligned_cols=20 Identities=0% Similarity=0.104 Sum_probs=17.2
Q ss_pred CCCEEEEecCCCcEEEEECC
Q 035276 29 DGITVFSGGCDKQVKTWPLL 48 (69)
Q Consensus 29 ~~~~l~s~~~d~~v~iwd~~ 48 (69)
.+.+++.++..|-|++||--
T Consensus 572 esGyIa~as~kGDirLyDRi 591 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRI 591 (776)
T ss_pred cCceEEEecCCCceeeehhh
Confidence 46689999999999999964
No 436
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=25.65 E-value=1.5e+02 Score=19.38 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=23.0
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276 21 VLCSTLKDDGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t 49 (69)
-..++-+|.|+.++.+..++.+.++-++.
T Consensus 46 G~~l~vDP~~R~i~v~a~e~~~~v~~l~~ 74 (504)
T PF10433_consen 46 GQYLAVDPSGRCIAVSAYEGNFLVYPLNR 74 (504)
T ss_dssp --EEEE-TTSSEEEEEEBTTEEEEEE-SS
T ss_pred CcEEEECCcCCEEEEEecCCeEEEEEecc
Confidence 45689999999999999999999999877
No 437
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=25.34 E-value=79 Score=14.41 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=8.5
Q ss_pred EEEECCCCCEEEEe
Q 035276 23 CSTLKDDGITVFSG 36 (69)
Q Consensus 23 ~~~~s~~~~~l~s~ 36 (69)
..+|.|||+.++..
T Consensus 29 ~aa~~pdG~lvAL~ 42 (56)
T PF09142_consen 29 VAAFAPDGRLVALL 42 (56)
T ss_dssp EEEE-TTS-EEEEE
T ss_pred EEEECCCCcEEEEE
Confidence 45788898877654
No 438
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=25.28 E-value=1.4e+02 Score=18.11 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=25.9
Q ss_pred CCCCCeEEEEECCCCCEE--EEecCC-CcEEEEECCC
Q 035276 16 NKSIEVLCSTLKDDGITV--FSGGCD-KQVKTWPLLS 49 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l--~s~~~d-~~v~iwd~~t 49 (69)
.+.+-|--+|||.|..+. +.++.+ +..++-.+..
T Consensus 163 ~~pgvvAElC~SDDP~YtTGYVA~~~~gY~RI~~lK~ 199 (232)
T TIGR01204 163 FCPAVVAELCWSDDPDYVTGYVSGKEIGYVRITPLKE 199 (232)
T ss_pred cCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccc
Confidence 456677889999998765 667777 7888877754
No 439
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=25.27 E-value=96 Score=15.00 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=11.8
Q ss_pred cEEEEECCCCCccEEe
Q 035276 41 QVKTWPLLSGGQPVIV 56 (69)
Q Consensus 41 ~v~iwd~~t~~~~~~~ 56 (69)
+|+++|-.++.....+
T Consensus 28 tvrl~d~~sg~~~l~v 43 (69)
T PF07865_consen 28 TVRLFDPASGRVELTV 43 (69)
T ss_pred EEEEecCCCCcEEEEE
Confidence 7899999887664444
No 440
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=25.21 E-value=1.7e+02 Score=18.50 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=23.1
Q ss_pred EEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 24 STLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 24 ~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
=+-+|+...+++..-..-+++||+.. ++++.+
T Consensus 61 h~t~P~kS~vItt~Kk~Gl~VYDLsG-kqLqs~ 92 (364)
T COG4247 61 HATNPDKSLVITTVKKAGLRVYDLSG-KQLQSV 92 (364)
T ss_pred ccCCcCcceEEEeeccCCeEEEecCC-Ceeeec
Confidence 34567788888888788899999854 555443
No 441
>smart00415 HSF heat shock factor.
Probab=24.42 E-value=98 Score=15.84 Aligned_cols=14 Identities=7% Similarity=-0.040 Sum_probs=10.4
Q ss_pred EEEECCCCCEEEEe
Q 035276 23 CSTLKDDGITVFSG 36 (69)
Q Consensus 23 ~~~~s~~~~~l~s~ 36 (69)
-+.|+++|+.++..
T Consensus 21 iI~W~~~G~~f~I~ 34 (105)
T smart00415 21 IISWSPSGKSFVIW 34 (105)
T ss_pred EEEECCCCCEEEEc
Confidence 47899999866543
No 442
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=24.42 E-value=82 Score=16.94 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=11.4
Q ss_pred CcEEEEECCCCCccEE
Q 035276 40 KQVKTWPLLSGGQPVI 55 (69)
Q Consensus 40 ~~v~iwd~~t~~~~~~ 55 (69)
-.|.+||+..|.++.+
T Consensus 42 E~V~V~Nv~nG~Rf~T 57 (116)
T PF02261_consen 42 EQVQVVNVNNGERFET 57 (116)
T ss_dssp BEEEEEETTT--EEEE
T ss_pred CEEEEEECCCCcEEEE
Confidence 4799999999887654
No 443
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=24.00 E-value=83 Score=19.54 Aligned_cols=14 Identities=14% Similarity=-0.002 Sum_probs=10.4
Q ss_pred EEEECCCCCEEEEe
Q 035276 23 CSTLKDDGITVFSG 36 (69)
Q Consensus 23 ~~~~s~~~~~l~s~ 36 (69)
-+.|+|+|..++.-
T Consensus 29 ~I~Ws~~G~sfvI~ 42 (282)
T COG5169 29 LIQWSPDGRSFVIL 42 (282)
T ss_pred ceEECCCCCEEEEe
Confidence 47899999876543
No 444
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=23.98 E-value=74 Score=19.87 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=8.9
Q ss_pred ECCCCCEEEEecCCCcEE
Q 035276 26 LKDDGITVFSGGCDKQVK 43 (69)
Q Consensus 26 ~s~~~~~l~s~~~d~~v~ 43 (69)
|+.+|+.+++....|.++
T Consensus 266 f~r~G~LiA~~~QEG~~r 283 (289)
T COG1946 266 FDRDGQLIASVVQEGLIR 283 (289)
T ss_pred EcCCCCEEEEEeeeEEEe
Confidence 445555555554444443
No 445
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=23.44 E-value=68 Score=12.61 Aligned_cols=29 Identities=3% Similarity=-0.258 Sum_probs=19.2
Q ss_pred eEEEEECCCCCEEE-EecCCCcEEEEECCC
Q 035276 21 VLCSTLKDDGITVF-SGGCDKQVKTWPLLS 49 (69)
Q Consensus 21 v~~~~~s~~~~~l~-s~~~d~~v~iwd~~t 49 (69)
+..++|++.++.|+ +-.....|...++..
T Consensus 11 ~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 11 PNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred cCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 45688999888775 444456777776643
No 446
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=23.30 E-value=1.2e+02 Score=15.42 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=18.8
Q ss_pred EEECCCCCEEEEecCCCcEEEEECCCC
Q 035276 24 STLKDDGITVFSGGCDKQVKTWPLLSG 50 (69)
Q Consensus 24 ~~~s~~~~~l~s~~~d~~v~iwd~~t~ 50 (69)
+....+|..++.|+.++. ++|=+.+.
T Consensus 3 v~~~~~g~~lAiGG~~g~-~~Wfvtt~ 28 (86)
T PF11090_consen 3 VTIEHKGRPLAIGGNNGG-CLWFVTTN 28 (86)
T ss_pred EEEecCCeEEEEccccCC-eEEEEECc
Confidence 445667888999988853 67777664
No 447
>PLN02868 acyl-CoA thioesterase family protein
Probab=22.96 E-value=68 Score=20.53 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=13.3
Q ss_pred EEECCCCCEEEEecCCC
Q 035276 24 STLKDDGITVFSGGCDK 40 (69)
Q Consensus 24 ~~~s~~~~~l~s~~~d~ 40 (69)
--|+.+|+.++++..++
T Consensus 395 ~l~~~~G~LvAs~~Qe~ 411 (413)
T PLN02868 395 HMFNRKGELVVSLTQEA 411 (413)
T ss_pred EEECCCCCEEEEEEeee
Confidence 35888999888887765
No 448
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=22.92 E-value=78 Score=14.26 Aligned_cols=10 Identities=30% Similarity=0.621 Sum_probs=7.2
Q ss_pred cCCCcEEEEE
Q 035276 37 GCDKQVKTWP 46 (69)
Q Consensus 37 ~~d~~v~iwd 46 (69)
-..|.||+|.
T Consensus 42 ~dnG~vRiWr 51 (51)
T PF09081_consen 42 EDNGQVRIWR 51 (51)
T ss_dssp ETTTTEEEEE
T ss_pred ccCCcEEeeC
Confidence 3457899984
No 449
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.65 E-value=58 Score=19.62 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=7.5
Q ss_pred ECCCCCEEE
Q 035276 26 LKDDGITVF 34 (69)
Q Consensus 26 ~s~~~~~l~ 34 (69)
|||||+.+-
T Consensus 11 FSPDGhL~Q 19 (249)
T KOG0183|consen 11 FSPDGHLFQ 19 (249)
T ss_pred ECCCCCEEe
Confidence 999998764
No 450
>PF14939 DCAF15_WD40: DDB1-and CUL4-substrate receptor 15, WD repeat
Probab=22.44 E-value=1.9e+02 Score=17.32 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=22.4
Q ss_pred EEEECCCCCEEEE----ecCC---------CcEEEEECCCCCccEE
Q 035276 23 CSTLKDDGITVFS----GGCD---------KQVKTWPLLSGGQPVI 55 (69)
Q Consensus 23 ~~~~s~~~~~l~s----~~~d---------~~v~iwd~~t~~~~~~ 55 (69)
-+.|+.+|++|++ +..| -.+..|..+.+.++..
T Consensus 35 flGft~cGq~lLSYt~~~~~~~~~~~~~ykY~L~wW~F~p~~~l~~ 80 (211)
T PF14939_consen 35 FLGFTKCGQFLLSYTSSCDDDDSLFFSNYKYHLYWWNFNPHQKLRK 80 (211)
T ss_pred EEeecccCCEEEEEEeccCcccccccccceEEEEEEEecCCCeEEE
Confidence 4679999999876 2211 2678888887766543
No 451
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=21.95 E-value=1.7e+02 Score=17.83 Aligned_cols=34 Identities=9% Similarity=-0.112 Sum_probs=26.1
Q ss_pred CCCCCeEEEEECCCCCEE--EEecCC-CcEEEEECCC
Q 035276 16 NKSIEVLCSTLKDDGITV--FSGGCD-KQVKTWPLLS 49 (69)
Q Consensus 16 ~~~~~v~~~~~s~~~~~l--~s~~~d-~~v~iwd~~t 49 (69)
.|.+-|--+|||.|..+. +.++.+ +..++-.+..
T Consensus 170 ~~pgivAElC~SDDP~YtTGYVA~~~~gY~RI~~mK~ 206 (242)
T PRK01322 170 AHPGVIAELCWSDDPDYTTGYVATKKLGYHRITNLKE 206 (242)
T ss_pred cCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccc
Confidence 467778889999988765 667777 7888877754
No 452
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=21.70 E-value=1.1e+02 Score=15.52 Aligned_cols=17 Identities=18% Similarity=0.011 Sum_probs=12.2
Q ss_pred cEEEEECCCCCccEEec
Q 035276 41 QVKTWPLLSGGQPVIVA 57 (69)
Q Consensus 41 ~v~iwd~~t~~~~~~~~ 57 (69)
.|++.|..|++.++.++
T Consensus 69 vVkViD~~T~eVIRqIP 85 (107)
T PF03646_consen 69 VVKVIDKETGEVIRQIP 85 (107)
T ss_dssp EEEEEETTT-SEEEEE-
T ss_pred EEEEEECCCCcEEEeCC
Confidence 46899999988877764
No 453
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=21.51 E-value=1.9e+02 Score=17.18 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=21.6
Q ss_pred EEEEECCCCCEEEEecC-CCcEEEEECCCCC
Q 035276 22 LCSTLKDDGITVFSGGC-DKQVKTWPLLSGG 51 (69)
Q Consensus 22 ~~~~~s~~~~~l~s~~~-d~~v~iwd~~t~~ 51 (69)
.+..++|+|+.++.+.. +..+.++|+....
T Consensus 221 ~S~ivdp~G~ii~~~~~~~e~~~~~~i~~~~ 251 (270)
T cd07571 221 ISAVIDPDGRIVARLPLFEAGVLVAEVPLRT 251 (270)
T ss_pred eeEEECCCCcEEeecCCCcceEEEEEeccCC
Confidence 35678999998887665 4567888886543
No 454
>cd01211 GAPCenA GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA is a centrosome-associated GTPase activating protein (GAP) for rab 6. It consists of an N-terminal PTB domain and a C-terminal TBC domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=21.42 E-value=1.6e+02 Score=16.11 Aligned_cols=20 Identities=15% Similarity=-0.047 Sum_probs=14.0
Q ss_pred ecCCCcEEEEECCCCCccEE
Q 035276 36 GGCDKQVKTWPLLSGGQPVI 55 (69)
Q Consensus 36 ~~~d~~v~iwd~~t~~~~~~ 55 (69)
....|.|++.|-++...+..
T Consensus 47 ~~seG~V~l~D~~t~~~ias 66 (125)
T cd01211 47 NNIEGTVKLIDAQSNKVIAS 66 (125)
T ss_pred CCCCceEEEEcCCCCcEEEE
Confidence 35678899999888655443
No 455
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.36 E-value=35 Score=20.14 Aligned_cols=14 Identities=7% Similarity=0.228 Sum_probs=10.0
Q ss_pred cEEEEECCCCCccE
Q 035276 41 QVKTWPLLSGGQPV 54 (69)
Q Consensus 41 ~v~iwd~~t~~~~~ 54 (69)
++++||+...++.+
T Consensus 59 KlQIWDTAGQERFr 72 (205)
T KOG0084|consen 59 KLQIWDTAGQERFR 72 (205)
T ss_pred EEEeeeccccHHHh
Confidence 89999987644443
No 456
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=21.26 E-value=2e+02 Score=17.35 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=21.6
Q ss_pred EEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276 24 STLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56 (69)
Q Consensus 24 ~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~ 56 (69)
+-..|||+.++.+..+. .+||..+.+.++.+
T Consensus 175 ~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 175 VHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred EEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 55788999888877654 66788776544444
No 457
>PF04052 TolB_N: TolB amino-terminal domain; InterPro: IPR007195 TolB is a periplasmic protein from Escherichia coli that is part of the Tol-dependent translocation system involving group A and E colicins that is used to penetrate and kill cells [, ]. TolB has two domains, an alpha-helical N-terminal domain that shares structural similarity with the C-terminal domain of transfer RNA ligases, and a beta-propeller C-terminal domain (IPR011042 from INTERPRO) that shares structural similarity with numerous members of the prolyl oligopeptidase family and, to a lesser extent, to class B metallo-beta-lactamases []. The function of the N-terminal domain is uncertain.; GO: 0015031 protein transport, 0042597 periplasmic space; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A.
Probab=21.19 E-value=65 Score=16.18 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=5.1
Q ss_pred cEEEEECCCCCc
Q 035276 41 QVKTWPLLSGGQ 52 (69)
Q Consensus 41 ~v~iwd~~t~~~ 52 (69)
.+++||+.+++.
T Consensus 93 ~~~L~Dv~~~~~ 104 (105)
T PF04052_consen 93 EFRLYDVASGKQ 104 (105)
T ss_dssp EEEEEE------
T ss_pred EEEEEecccccC
Confidence 688999988653
No 458
>PHA03092 semaphorin-like protein; Provisional
Probab=21.12 E-value=1.6e+02 Score=15.94 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.5
Q ss_pred CCCEEEEecCCCcEEEEECCC
Q 035276 29 DGITVFSGGCDKQVKTWPLLS 49 (69)
Q Consensus 29 ~~~~l~s~~~d~~v~iwd~~t 49 (69)
|...|++|...|..+.|.+..
T Consensus 71 d~dtlvcgtnngnpkcwkidg 91 (134)
T PHA03092 71 DKDTLVCGTNNGNPKCWKIDG 91 (134)
T ss_pred cCceEEEecCCCCcceEEEcC
Confidence 556788999999999999864
No 459
>PF01394 Clathrin_propel: Clathrin propeller repeat; InterPro: IPR022365 This entry represents the propeller repeat found in clathrin heavy chains. The N terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller []. Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1UTC_B 3GD1_I 3GC3_B 1BPO_C 1C9I_B 1C9L_A 2XZG_A 2XZH_A.
Probab=20.52 E-value=67 Score=13.28 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=8.3
Q ss_pred CCCcEEEEECC
Q 035276 38 CDKQVKTWPLL 48 (69)
Q Consensus 38 ~d~~v~iwd~~ 48 (69)
..|.+++||++
T Consensus 27 ~~G~v~l~sve 37 (37)
T PF01394_consen 27 VKGQVQLYSVE 37 (37)
T ss_dssp TEEEEEEEETT
T ss_pred eeeEEEEEECC
Confidence 56788888864
No 460
>KOG3535 consensus Adaptor protein Disabled [Signal transduction mechanisms]
Probab=20.27 E-value=2.2e+02 Score=19.14 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=18.6
Q ss_pred EEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276 33 VFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL 68 (69)
Q Consensus 33 l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~ 68 (69)
.+.-+.|| |+|.|=.+|.. .|..+|..+.|
T Consensus 95 ~l~Is~~G-IKI~DEKtGav-----~H~hpV~~ISf 124 (557)
T KOG3535|consen 95 TLQISIDG-IKILDEKTGAV-----LHNHPVSRISF 124 (557)
T ss_pred EEEEeecc-eEEeeccccce-----eccCccceeee
Confidence 34455565 89999888643 25556666554
No 461
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=20.20 E-value=1.7e+02 Score=15.99 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=13.4
Q ss_pred CCcEEEEECCCCCccEE
Q 035276 39 DKQVKTWPLLSGGQPVI 55 (69)
Q Consensus 39 d~~v~iwd~~t~~~~~~ 55 (69)
.-+|.+|++..|.++.+
T Consensus 40 ~EkV~I~N~nNGaRf~T 56 (126)
T COG0853 40 NEKVDIVNVNNGARFST 56 (126)
T ss_pred CceEEEEECCCCcEEEE
Confidence 34899999999887654
No 462
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=20.18 E-value=1.7e+02 Score=19.19 Aligned_cols=31 Identities=16% Similarity=0.006 Sum_probs=18.5
Q ss_pred hhhhccCCCCC-CCeEEEEECCCCCEEEEecC
Q 035276 8 AVATNQNPNKS-IEVLCSTLKDDGITVFSGGC 38 (69)
Q Consensus 8 ~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~ 38 (69)
.+...++++.. ..-..+.|+|||+..++-++
T Consensus 165 ~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~ 196 (399)
T COG2133 165 KVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGS 196 (399)
T ss_pred cEEeecCCCCCCcCcccEEECCCCcEEEEeCC
Confidence 44455566532 23356899999965555443
No 463
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=20.15 E-value=1.1e+02 Score=20.53 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=15.9
Q ss_pred CCCCeEEEEECCCCCEEEEe
Q 035276 17 KSIEVLCSTLKDDGITVFSG 36 (69)
Q Consensus 17 ~~~~v~~~~~s~~~~~l~s~ 36 (69)
...++..++|+||++.|...
T Consensus 500 ~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 500 NGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred CCcccccceECCCCCEEEEE
Confidence 46678889999999988653
No 464
>PF09984 DUF2222: Uncharacterized signal transduction histidine kinase domain (DUF2222); InterPro: IPR019247 This entry is found at the N terminus of various BarA-like signal transduction histidine kinases. These proteins are involved in the regulation of carbon metabolism via the csrA/csrB regulatory system. The role of this domain has not, as yet, been established. ; GO: 0004673 protein histidine kinase activity
Probab=20.04 E-value=1.8e+02 Score=16.17 Aligned_cols=27 Identities=7% Similarity=0.083 Sum_probs=19.2
Q ss_pred CCCCeEEEE-ECCCCCEEEEecCCCcEE
Q 035276 17 KSIEVLCST-LKDDGITVFSGGCDKQVK 43 (69)
Q Consensus 17 ~~~~v~~~~-~s~~~~~l~s~~~d~~v~ 43 (69)
|+.-|.+++ |+.+.+.+++++......
T Consensus 49 ~S~~VrsIaiFD~~n~L~vTSn~h~~~~ 76 (146)
T PF09984_consen 49 HSPIVRSIAIFDANNQLFVTSNYHRDFE 76 (146)
T ss_pred CCCceEEEEEEcCCCcEEEECCCcCChh
Confidence 556688876 888888888876555433
Done!