Query 035278
Match_columns 69
No_of_seqs 100 out of 115
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 17:30:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kv5_A FST, putative uncharact 30.8 22 0.00076 19.1 1.3 10 5-14 10-19 (33)
2 3arc_L Photosystem II reaction 17.9 1.2E+02 0.0041 16.5 2.7 16 48-63 15-30 (37)
3 3lti_A DNA-directed RNA polyme 15.0 75 0.0026 23.5 1.8 8 17-24 4-11 (296)
4 1cse_I Eglin C; complex(serine 12.7 48 0.0016 19.2 0.2 8 33-40 2-9 (70)
5 1v54_D Cytochrome C oxidase su 11.5 91 0.0031 21.0 1.3 19 2-20 76-94 (147)
6 1xd7_A YWNA; structural genomi 11.1 1.5E+02 0.0053 18.1 2.2 18 36-53 2-19 (145)
7 4e0e_A Putative uncharacterize 9.2 1.2E+02 0.0039 21.1 1.2 17 24-41 4-20 (178)
8 2y69_D Cytochrome C oxidase su 9.0 1.3E+02 0.0043 20.8 1.3 18 2-19 98-115 (169)
9 1e6y_B Methyl-coenzyme M reduc 8.7 53 0.0018 26.0 -0.8 29 21-50 108-139 (433)
10 1hbn_B Methyl-coenzyme M reduc 8.1 59 0.002 25.8 -0.8 29 21-50 111-142 (442)
No 1
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=30.84 E-value=22 Score=19.06 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=8.4
Q ss_pred hhHHHHHHHH
Q 035278 5 GPVVIGVVLF 14 (69)
Q Consensus 5 gpV~i~vvLF 14 (69)
||+++|++|=
T Consensus 10 aPivVGvvl~ 19 (33)
T 2kv5_A 10 APIFVGLVLE 19 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7999999874
No 2
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=17.94 E-value=1.2e+02 Score=16.54 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 035278 48 TLIFFVLYAILILAVH 63 (69)
Q Consensus 48 a~ifF~l~~if~~ai~ 63 (69)
|-+|.+++.||.+|+-
T Consensus 15 TSLy~GLLlifvlavl 30 (37)
T 3arc_L 15 TSLYLGLLLILVLALL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4578888888888764
No 3
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=15.03 E-value=75 Score=23.50 Aligned_cols=8 Identities=38% Similarity=1.202 Sum_probs=7.0
Q ss_pred hccceeEE
Q 035278 17 LQPGLLFQ 24 (69)
Q Consensus 17 LsPGLLfQ 24 (69)
+|||.-|+
T Consensus 4 ~SPGv~f~ 11 (296)
T 3lti_A 4 MSPGVFFD 11 (296)
T ss_dssp CCCEEEEE
T ss_pred CCCEEEEe
Confidence 69999997
No 4
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=12.67 E-value=48 Score=19.20 Aligned_cols=8 Identities=50% Similarity=0.679 Sum_probs=1.4
Q ss_pred eecCCccc
Q 035278 33 EFGSMKTN 40 (69)
Q Consensus 33 eFgn~~Ts 40 (69)
|||+.|||
T Consensus 2 ~~~~~k~s 9 (70)
T 1cse_I 2 EFGSELKS 9 (70)
T ss_dssp ------CB
T ss_pred CcCCCCCc
Confidence 78888876
No 5
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=11.54 E-value=91 Score=20.96 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=13.0
Q ss_pred CCchhHHHHHHHHHHhccc
Q 035278 2 ADWGPVVIGVVLFVLLQPG 20 (69)
Q Consensus 2 ~DWgpV~i~vvLFvlLsPG 20 (69)
.+|.+|+-++.+|+-+|=+
T Consensus 76 gewK~v~g~v~~~i~~s~~ 94 (147)
T 1v54_D 76 NEWKTVVGAAMFFIGFTAL 94 (147)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 4688887777777665533
No 6
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=11.10 E-value=1.5e+02 Score=18.11 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=11.5
Q ss_pred CCcccHHHHHHHHHHHHH
Q 035278 36 SMKTNGKAISVHTLIFFV 53 (69)
Q Consensus 36 n~~Tsg~si~VHa~ifF~ 53 (69)
.|+|+....-+|+++|.+
T Consensus 2 ~M~s~~~~yAl~~L~~La 19 (145)
T 1xd7_A 2 SLINSRLAVAIHILSLIS 19 (145)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 477777888899988865
No 7
>4e0e_A Putative uncharacterized protein; DUF4450 family, structural genomics, joint center for struct genomics, JCSG; 2.90A {Bacteroides thetaiotaomicron}
Probab=9.16 E-value=1.2e+02 Score=21.10 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=13.2
Q ss_pred EecCCCceeeecCCcccH
Q 035278 24 QLPGHSRLLEFGSMKTNG 41 (69)
Q Consensus 24 Q~PG~~r~veFgn~~Tsg 41 (69)
|+||.++.+.|| .++++
T Consensus 4 ~~p~~~Gnirfg-i~~g~ 20 (178)
T 4e0e_A 4 QLTPPAGTFRLG-ISKGT 20 (178)
T ss_dssp CCCCSSSEEEEE-EEETT
T ss_pred cCCCCCceEEEE-EEcCC
Confidence 789999999998 44443
No 8
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.03 E-value=1.3e+02 Score=20.76 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=12.6
Q ss_pred CCchhHHHHHHHHHHhcc
Q 035278 2 ADWGPVVIGVVLFVLLQP 19 (69)
Q Consensus 2 ~DWgpV~i~vvLFvlLsP 19 (69)
.+|.+|+-++.+|+-+|=
T Consensus 98 gEWK~V~ggv~~~i~~s~ 115 (169)
T 2y69_D 98 NEWKTVVGAAMFFIGFTA 115 (169)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 468888877777766553
No 9
>1e6y_B Methyl-coenzyme M reductase I beta subunit; biological methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP: a.89.1.1 d.58.31.2
Probab=8.72 E-value=53 Score=26.00 Aligned_cols=29 Identities=38% Similarity=0.531 Sum_probs=23.1
Q ss_pred eeEEecCCCce---eeecCCcccHHHHHHHHHH
Q 035278 21 LLFQLPGHSRL---LEFGSMKTNGKAISVHTLI 50 (69)
Q Consensus 21 LLfQ~PG~~r~---veFgn~~Tsg~si~VHa~i 50 (69)
+|.|+|-+ |. -||----|+..+.++|++|
T Consensus 108 llvqvPs~-R~~~aa~y~~~~~~~a~A~~~aIi 139 (433)
T 1e6y_B 108 LLIQSPKS-RIIAGADFMSATTVGAAAVTQTIM 139 (433)
T ss_dssp EEEECCHH-HHHTSSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HhhhhhhhhHHHHHHHHHHHHHHH
Confidence 78899954 44 6777778888999999986
No 10
>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} SCOP: a.89.1.1 d.58.31.2 PDB: 1hbm_B* 1hbo_B* 1hbu_B* 1mro_B* 3m1v_B* 3m2r_B* 3m2u_B* 3m2v_B* 3m30_B* 3m32_B* 3pot_B* 1e6v_B*
Probab=8.05 E-value=59 Score=25.80 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=23.1
Q ss_pred eeEEecCCCce---eeecCCcccHHHHHHHHHH
Q 035278 21 LLFQLPGHSRL---LEFGSMKTNGKAISVHTLI 50 (69)
Q Consensus 21 LLfQ~PG~~r~---veFgn~~Tsg~si~VHa~i 50 (69)
+|.|+|-+ |. -||----|+..+.++|++|
T Consensus 111 llvqvPs~-R~~~aa~y~~~~~~~a~A~~~aii 142 (442)
T 1hbn_B 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (442)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HhhhhcchhHHHHHHHHHHHHHHH
Confidence 78899954 44 6777778888999999987
Done!