Query 035278
Match_columns 69
No_of_seqs 100 out of 115
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 17:30:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035278.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035278hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 32.2 21 0.0015 18.3 2.7 18 47-64 14-31 (37)
2 d1hbnb2 d.58.31.2 (B:2-188) Be 19.7 8.7 0.00063 25.8 -0.5 29 21-50 111-142 (187)
3 d1e32a3 d.31.1.1 (A:107-200) M 18.4 21 0.0016 21.0 1.2 24 17-40 40-63 (94)
4 d1uf3a_ d.159.1.6 (A:) Hypothe 16.5 28 0.002 19.5 1.4 15 22-38 214-228 (228)
5 d1x4ka2 g.39.1.3 (A:8-34) Four 15.8 29 0.0021 16.6 1.1 10 25-35 9-18 (27)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 15.8 59 0.0043 15.7 2.4 15 48-62 7-21 (30)
7 d1rqpa1 b.141.1.1 (A:193-298) 12.3 15 0.0011 21.1 -0.8 16 27-42 12-29 (106)
8 d1jb0m_ f.23.19.1 (M:) Subunit 12.2 24 0.0017 17.4 0.1 12 11-22 10-21 (31)
9 d1tmka_ c.37.1.1 (A:) Thymidyl 11.9 68 0.005 19.2 2.4 23 27-49 1-23 (214)
10 d1r59o2 c.55.1.4 (O:257-491) G 8.7 64 0.0046 20.1 1.4 23 22-44 36-58 (235)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=32.16 E-value=21 Score=18.32 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 035278 47 HTLIFFVLYAILILAVHV 64 (69)
Q Consensus 47 Ha~ifF~l~~if~~ai~v 64 (69)
+|-+|.+++.||.+|+-.
T Consensus 14 rtsLy~GlLlifvl~vLF 31 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 566888998888887643
No 2
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=19.66 E-value=8.7 Score=25.77 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=23.8
Q ss_pred eeEEecCCCc---eeeecCCcccHHHHHHHHHH
Q 035278 21 LLFQLPGHSR---LLEFGSMKTNGKAISVHTLI 50 (69)
Q Consensus 21 LLfQ~PG~~r---~veFgn~~Tsg~si~VHa~i 50 (69)
+|.|+|-+ | --||..--|+..+.++|++|
T Consensus 111 llvqvPs~-Ri~~aa~Y~v~~t~~~~A~~~aIi 142 (187)
T d1hbnb2 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (187)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HHhhhhhhhHHHHHHHHHHHHHHH
Confidence 78999954 4 56788888999999999987
No 3
>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2, P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.40 E-value=21 Score=21.05 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=19.6
Q ss_pred hccceeEEecCCCceeeecCCccc
Q 035278 17 LQPGLLFQLPGHSRLLEFGSMKTN 40 (69)
Q Consensus 17 LsPGLLfQ~PG~~r~veFgn~~Ts 40 (69)
++.|=.|.+-|..|.|||-=++|.
T Consensus 40 v~~gD~f~v~g~~r~VEFKVv~~d 63 (94)
T d1e32a3 40 IRKGDIFLVRGGMRAVEFKVVETD 63 (94)
T ss_dssp EETTCEEEEEETTEEEEEEEEEES
T ss_pred ccCCCEEEEccCCeeEEEEEEeec
Confidence 467889999999999999766553
No 4
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=16.49 E-value=28 Score=19.50 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=10.5
Q ss_pred eEEecCCCceeeecCCc
Q 035278 22 LFQLPGHSRLLEFGSMK 38 (69)
Q Consensus 22 LfQ~PG~~r~veFgn~~ 38 (69)
+.++.++ .+||||.+
T Consensus 214 ~i~~~~~--~ie~~~~~ 228 (228)
T d1uf3a_ 214 LLDLRAR--KLETGNVR 228 (228)
T ss_dssp EEETTTT--EEEEEECC
T ss_pred EEEccCC--EEEEEeeC
Confidence 4566555 89999864
No 5
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.83 E-value=29 Score=16.64 Aligned_cols=10 Identities=40% Similarity=0.989 Sum_probs=7.2
Q ss_pred ecCCCceeeec
Q 035278 25 LPGHSRLLEFG 35 (69)
Q Consensus 25 ~PG~~r~veFg 35 (69)
+||. |..||-
T Consensus 9 MPGs-rKme~k 18 (27)
T d1x4ka2 9 MPGT-RKMEYK 18 (27)
T ss_dssp CSSS-CEEEET
T ss_pred cCCc-eeeccc
Confidence 6876 588874
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.81 E-value=59 Score=15.69 Aligned_cols=15 Identities=27% Similarity=0.633 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHH
Q 035278 48 TLIFFVLYAILILAV 62 (69)
Q Consensus 48 a~ifF~l~~if~~ai 62 (69)
.+||-+++.+|..|+
T Consensus 7 v~ifac~i~lfffai 21 (30)
T d2axtt1 7 VFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777777775
No 7
>d1rqpa1 b.141.1.1 (A:193-298) 5'-fluoro-5'-deoxyadenosine synthase {Streptomyces cattleya [TaxId: 29303]}
Probab=12.33 E-value=15 Score=21.14 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=11.1
Q ss_pred CCCceee--ecCCcccHH
Q 035278 27 GHSRLLE--FGSMKTNGK 42 (69)
Q Consensus 27 G~~r~ve--Fgn~~Tsg~ 42 (69)
|.-..+| |||..||..
T Consensus 12 G~V~~iDh~FGN~iTNI~ 29 (106)
T d1rqpa1 12 GVVSAIDHPFGNVWTNIH 29 (106)
T ss_dssp EEEEEEETTTTEEEEEEE
T ss_pred EEEEEEecCCCcEEEecC
Confidence 3334667 999999854
No 8
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=12.16 E-value=24 Score=17.44 Aligned_cols=12 Identities=42% Similarity=0.717 Sum_probs=8.2
Q ss_pred HHHHHHhcccee
Q 035278 11 VVLFVLLQPGLL 22 (69)
Q Consensus 11 vvLFvlLsPGLL 22 (69)
++|-+.|.||.|
T Consensus 10 valvial~pg~l 21 (31)
T d1jb0m_ 10 VALVIALLPAVL 21 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677888865
No 9
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.90 E-value=68 Score=19.16 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=18.2
Q ss_pred CCCceeeecCCcccHHHHHHHHH
Q 035278 27 GHSRLLEFGSMKTNGKAISVHTL 49 (69)
Q Consensus 27 G~~r~veFgn~~Tsg~si~VHa~ 49 (69)
||++.+-|=+..-||+|-.++.+
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L 23 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNIL 23 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEECCCCCcHHHHHHHH
Confidence 78888888888888888877754
No 10
>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}
Probab=8.70 E-value=64 Score=20.08 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=18.8
Q ss_pred eEEecCCCceeeecCCcccHHHH
Q 035278 22 LFQLPGHSRLLEFGSMKTNGKAI 44 (69)
Q Consensus 22 LfQ~PG~~r~veFgn~~Tsg~si 44 (69)
-+++||+....-.|.+.++|.++
T Consensus 36 ~~~~~~~~~y~~eg~~~~~G~~~ 58 (235)
T d1r59o2 36 GYGINGKVYYALEGSIFVAGSAI 58 (235)
T ss_dssp CCCSSSCCCEEEECCCSCSSHHH
T ss_pred EEEeCCccEEEeHHHHHHHHHHH
Confidence 47888888788889999998765
Done!