Query 035282
Match_columns 68
No_of_seqs 108 out of 162
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 10:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3491 Predicted membrane pro 100.0 5.2E-33 1.1E-37 167.2 6.9 65 1-66 1-65 (65)
2 PF06624 RAMP4: Ribosome assoc 100.0 2.1E-32 4.5E-37 164.5 4.7 58 3-63 5-62 (63)
3 PF06724 DUF1206: Domain of Un 89.4 0.94 2E-05 26.5 4.1 31 34-64 41-71 (73)
4 PF10661 EssA: WXG100 protein 82.7 2.8 6E-05 28.4 4.1 57 6-62 83-143 (145)
5 PHA02513 V1 structural protein 82.6 1.5 3.2E-05 29.8 2.7 27 34-61 63-89 (135)
6 PHA00739 V3 structural protein 81.3 1.3 2.7E-05 28.5 2.0 19 41-59 7-25 (92)
7 PF02723 NS3_envE: Non-structu 79.7 3.3 7.1E-05 26.1 3.4 23 40-62 18-40 (82)
8 PF09527 ATPase_gene1: Putativ 77.5 3.4 7.3E-05 23.0 2.8 29 35-63 27-55 (55)
9 PF14715 FixP_N: N-terminal do 76.3 3.8 8.3E-05 23.4 2.8 23 34-56 16-38 (51)
10 PF13131 DUF3951: Protein of u 74.5 3.1 6.7E-05 24.4 2.1 22 37-58 5-26 (53)
11 PF11359 gpUL132: Glycoprotein 73.7 2.3 5E-05 31.4 1.7 26 38-63 46-71 (235)
12 KOG3626 Organic anion transpor 72.8 2.8 6E-05 35.2 2.2 19 35-56 315-333 (735)
13 PF10694 DUF2500: Protein of u 64.7 2.1 4.6E-05 27.1 0.0 24 40-63 1-24 (110)
14 TIGR00782 ccoP cytochrome c ox 64.1 8.1 0.00018 27.9 2.9 23 34-56 22-44 (285)
15 PF11446 DUF2897: Protein of u 64.0 6.8 0.00015 22.8 2.1 18 40-57 2-19 (55)
16 PF09753 Use1: Membrane fusion 60.9 11 0.00024 26.7 3.1 18 41-58 228-245 (251)
17 PF14283 DUF4366: Domain of un 60.7 9.2 0.0002 27.5 2.6 22 33-55 155-176 (218)
18 COG5336 Uncharacterized protei 58.2 15 0.00033 24.5 3.2 26 38-63 72-97 (116)
19 COG1766 fliF Flagellar basal b 55.0 20 0.00044 29.1 3.9 32 35-66 442-473 (545)
20 PF10861 DUF2784: Protein of U 53.3 12 0.00026 24.4 2.0 14 43-56 13-26 (112)
21 PF03137 OATP: Organic Anion T 44.9 7.2 0.00016 30.8 0.0 12 37-48 224-235 (539)
22 TIGR02230 ATPase_gene1 F0F1-AT 44.9 37 0.00081 21.8 3.3 30 34-63 68-97 (100)
23 PF05251 UPF0197: Uncharacteri 43.7 34 0.00075 21.2 2.9 22 35-56 8-29 (77)
24 PF06480 FtsH_ext: FtsH Extrac 41.9 8.5 0.00019 22.4 0.0 18 41-58 1-18 (110)
25 PF11466 Doppel: Prion-like pr 41.2 24 0.00052 18.5 1.6 14 36-49 3-16 (30)
26 PHA02975 hypothetical protein; 41.0 85 0.0018 19.3 4.4 22 35-56 40-61 (69)
27 PF14138 COX16: Cytochrome c o 39.7 45 0.00097 20.4 3.0 19 44-62 6-24 (80)
28 PF13623 SurA_N_2: SurA N-term 37.9 29 0.00063 23.2 2.1 15 36-50 10-24 (145)
29 PRK00269 zipA cell division pr 37.6 49 0.0011 25.2 3.5 23 41-63 7-29 (293)
30 PF13706 PepSY_TM_3: PepSY-ass 36.8 50 0.0011 17.2 2.5 18 42-59 14-31 (37)
31 PF11044 TMEMspv1-c74-12: Plec 35.9 89 0.0019 18.0 3.7 23 42-64 12-34 (49)
32 PF05365 UCR_UQCRX_QCR9: Ubiqu 35.0 49 0.0011 19.1 2.5 16 44-59 14-29 (55)
33 TIGR01006 polys_exp_MPA1 polys 34.9 1.5E+02 0.0032 20.2 5.6 38 4-41 133-173 (226)
34 COG5416 Uncharacterized integr 34.5 80 0.0017 20.6 3.6 18 40-57 60-77 (98)
35 PRK09040 hypothetical protein; 34.4 50 0.0011 23.2 2.9 18 41-58 24-41 (214)
36 PF07047 OPA3: Optic atrophy 3 34.1 57 0.0012 21.4 3.0 23 42-64 79-102 (134)
37 PF12729 4HB_MCP_1: Four helix 33.9 94 0.002 18.8 3.8 20 41-60 12-31 (181)
38 PF03908 Sec20: Sec20; InterP 33.8 50 0.0011 20.0 2.5 15 41-55 73-87 (92)
39 PF10831 DUF2556: Protein of u 33.8 96 0.0021 18.0 3.5 24 41-64 6-31 (53)
40 PF12575 DUF3753: Protein of u 33.7 1.1E+02 0.0023 18.9 3.9 17 39-55 48-64 (72)
41 PHA02844 putative transmembran 33.7 91 0.002 19.4 3.6 22 35-56 44-65 (75)
42 PF14018 DUF4234: Domain of un 32.8 42 0.00091 19.4 2.0 15 39-53 2-16 (75)
43 COG3944 Capsular polysaccharid 32.8 2E+02 0.0044 21.2 6.7 39 4-42 130-172 (226)
44 PF13260 DUF4051: Protein of u 32.4 1.1E+02 0.0023 17.9 3.6 21 41-61 5-25 (54)
45 PF02936 COX4: Cytochrome c ox 31.7 92 0.002 20.9 3.8 25 40-64 76-100 (142)
46 PF06422 PDR_CDR: CDR ABC tran 31.5 58 0.0013 20.3 2.6 30 37-66 51-80 (103)
47 PF02060 ISK_Channel: Slow vol 31.3 41 0.00089 22.9 2.0 20 40-60 48-67 (129)
48 PF11014 DUF2852: Protein of u 30.7 60 0.0013 21.5 2.7 22 36-57 10-31 (115)
49 PRK13254 cytochrome c-type bio 30.0 1.1E+02 0.0024 20.7 3.9 26 40-65 8-33 (148)
50 PF05449 DUF754: Protein of un 29.9 1.3E+02 0.0029 18.5 4.0 26 35-60 23-48 (83)
51 MTH00093 ND4L NADH dehydrogena 29.8 56 0.0012 19.7 2.2 16 40-55 43-58 (77)
52 PRK10332 hypothetical protein; 29.8 1.6E+02 0.0035 19.2 4.6 32 33-64 8-39 (107)
53 TIGR01711 gspJ general secreti 29.6 93 0.002 21.3 3.6 24 41-64 8-31 (192)
54 COG2095 MarC Multiple antibiot 29.2 67 0.0015 22.8 2.9 20 41-60 50-69 (203)
55 PF15183 MRAP: Melanocortin-2 28.7 98 0.0021 19.9 3.3 27 36-65 37-63 (90)
56 PF07466 DUF1517: Protein of u 28.6 59 0.0013 24.2 2.6 26 39-64 61-86 (289)
57 PF14147 Spore_YhaL: Sporulati 27.9 72 0.0016 18.6 2.4 20 39-62 1-20 (52)
58 TIGR03063 srtB_target sortase 26.9 93 0.002 16.0 2.4 19 39-59 8-26 (29)
59 PF14316 DUF4381: Domain of un 26.7 85 0.0019 20.4 2.9 18 36-53 17-34 (146)
60 PRK10739 putative antibiotic t 26.5 84 0.0018 22.0 3.0 20 41-60 47-66 (197)
61 PF11293 DUF3094: Protein of u 26.1 98 0.0021 18.2 2.7 20 34-53 24-43 (55)
62 PRK08455 fliL flagellar basal 25.5 64 0.0014 22.3 2.2 20 38-57 19-38 (182)
63 PRK08156 type III secretion sy 25.4 1.6E+02 0.0034 22.7 4.5 31 19-54 16-46 (361)
64 COG1377 FlhB Flagellar biosynt 25.2 1.6E+02 0.0035 23.0 4.5 33 20-57 22-55 (363)
65 PRK13664 hypothetical protein; 25.0 1.5E+02 0.0033 17.8 3.5 20 41-62 8-27 (62)
66 PF07436 Curto_V3: Curtovirus 24.8 79 0.0017 20.1 2.3 11 38-48 4-14 (87)
67 PF13253 DUF4044: Protein of u 24.7 1.2E+02 0.0027 16.1 3.1 23 38-60 12-34 (35)
68 COG5264 VTC1 Vacuolar transpor 24.3 1.5E+02 0.0034 20.0 3.8 32 14-52 84-115 (126)
69 TIGR03064 sortase_srtB sortase 23.9 1E+02 0.0022 22.1 3.1 18 41-58 7-24 (232)
70 PF15330 SIT: SHP2-interacting 23.7 1.9E+02 0.0042 18.5 4.0 22 40-61 4-25 (107)
71 PF03601 Cons_hypoth698: Conse 23.5 1.2E+02 0.0025 22.6 3.4 22 35-56 240-261 (305)
72 TIGR01843 type_I_hlyD type I s 23.5 93 0.002 22.5 2.8 21 36-56 1-21 (423)
73 PF13808 DDE_Tnp_1_assoc: DDE_ 23.3 1.2E+02 0.0025 18.3 2.9 30 25-54 8-37 (90)
74 TIGR01707 gspI general secreti 23.0 1.8E+02 0.0039 18.1 3.7 22 41-62 7-28 (101)
75 PF12751 Vac7: Vacuolar segreg 22.9 76 0.0016 25.1 2.4 15 42-56 307-321 (387)
76 PF04088 Peroxin-13_N: Peroxin 22.8 1.2E+02 0.0026 20.8 3.1 21 34-54 130-150 (158)
77 PRK00720 tatA twin arginine tr 22.5 81 0.0018 19.6 2.0 16 38-53 4-22 (78)
78 PRK02958 tatA twin arginine tr 22.5 80 0.0017 19.3 2.0 15 38-52 4-21 (73)
79 PF04834 Adeno_E3_14_5: Early 22.0 1.4E+02 0.003 19.3 3.1 21 34-54 16-36 (97)
80 TIGR01010 BexC_CtrB_KpsE polys 22.0 1.4E+02 0.0031 21.8 3.6 29 34-62 324-353 (362)
81 PF04971 Lysis_S: Lysis protei 22.0 1.5E+02 0.0032 18.1 3.0 15 50-64 38-52 (68)
82 CHL00038 psbL photosystem II p 21.8 98 0.0021 17.0 2.0 14 38-51 16-29 (38)
83 COG0818 DgkA Diacylglycerol ki 21.5 2.1E+02 0.0046 19.1 4.0 28 37-64 50-77 (123)
84 PF14979 TMEM52: Transmembrane 21.4 80 0.0017 22.1 2.0 18 38-55 22-39 (154)
85 PF07254 DUF1434: Protein of u 21.4 1E+02 0.0022 20.6 2.5 18 38-55 38-55 (132)
86 PRK00159 putative septation in 21.3 2.3E+02 0.005 17.9 4.1 28 36-63 26-54 (87)
87 PF05356 Phage_Coat_B: Phage C 21.2 2E+02 0.0043 18.2 3.6 26 36-61 57-82 (83)
88 COG5472 Predicted small integr 21.2 1.5E+02 0.0033 20.7 3.3 21 41-61 113-133 (164)
89 TIGR02223 ftsN cell division p 21.2 68 0.0015 24.0 1.7 17 37-53 24-40 (298)
90 PF07466 DUF1517: Protein of u 21.2 1.3E+02 0.0029 22.3 3.3 23 42-64 67-89 (289)
91 cd00922 Cyt_c_Oxidase_IV Cytoc 21.2 2E+02 0.0044 19.1 3.9 22 42-63 78-99 (136)
92 PF10183 ESSS: ESSS subunit of 21.1 1.2E+02 0.0027 19.1 2.7 17 40-56 62-78 (105)
93 PF10828 DUF2570: Protein of u 20.9 2E+02 0.0043 18.1 3.6 17 40-56 3-19 (110)
94 PF09451 ATG27: Autophagy-rela 20.8 1.8E+02 0.0039 20.9 3.8 22 34-55 195-216 (268)
95 COG4649 Uncharacterized protei 20.6 67 0.0015 23.6 1.6 17 38-54 26-42 (221)
96 PF11003 DUF2842: Protein of u 20.5 95 0.0021 18.2 1.9 16 39-54 31-46 (62)
97 PHA02692 hypothetical protein; 20.4 1.5E+02 0.0033 18.2 2.9 13 39-51 43-55 (70)
98 PF02433 FixO: Cytochrome C ox 20.4 1.4E+02 0.003 21.9 3.2 20 42-62 12-31 (226)
99 PF04375 HemX: HemX; InterPro 20.2 2E+02 0.0044 21.7 4.1 19 38-56 30-48 (372)
100 PF06522 B12D: NADH-ubiquinone 20.1 1.9E+02 0.0041 17.1 3.2 20 45-64 11-30 (73)
101 PF05624 LSR: Lipolysis stimul 20.0 88 0.0019 18.0 1.7 11 47-57 6-16 (49)
102 PF11947 DUF3464: Protein of u 20.0 1.2E+02 0.0026 20.9 2.6 22 36-57 92-113 (153)
103 KOG4343 bZIP transcription fac 20.0 1.1E+02 0.0023 25.8 2.7 34 19-52 338-374 (655)
No 1
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=5.2e-33 Score=167.22 Aligned_cols=65 Identities=57% Similarity=0.977 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHHHHhhhhhhcCCCCCccccCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 035282 1 MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIRTATSRG 66 (68)
Q Consensus 1 mtp~qR~aN~k~~Kf~kni~krGkv~~~~~kk~~k~pV~p~~l~lfiFVV~Gs~ifeiir~~~~~~ 66 (68)
||++||. ..+++||+|||.+||+|+++..++++||||+||+||||+||||||++|||||+++.|+
T Consensus 1 m~~Kqr~-~~anekfsKNi~~RGnVakt~~~~e~kypvgPwLlglFvFVVcGSa~FqIIr~~~mG~ 65 (65)
T KOG3491|consen 1 MTSKQRA-DRANEKFSKNILKRGNVAKTTTKKEKKYPVGPWLLGLFVFVVCGSALFQIIRTATMGG 65 (65)
T ss_pred CchHHHH-HHHHHHHhHHHHhcCCccccccCccccCCcchHHHHHHHHHhhcHHHHHHHHHHhccC
Confidence 8888876 3556699999999999999999999999999999999999999999999999999885
No 2
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=99.97 E-value=2.1e-32 Score=164.46 Aligned_cols=58 Identities=53% Similarity=0.946 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHhhhhhhcCCCCCccccCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHH
Q 035282 3 TSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIRTAT 63 (68)
Q Consensus 3 p~qR~aN~k~~Kf~kni~krGkv~~~~~kk~~k~pV~p~~l~lfiFVV~Gs~ifeiir~~~ 63 (68)
+.||+||+ ||+||+++||+++++.++++++|||||||||||+||||||+||||||+|+
T Consensus 5 ~~~r~an~---kf~kni~krG~v~~~~k~k~~k~pVgp~~L~l~iFVV~Gs~ifqiir~i~ 62 (63)
T PF06624_consen 5 RRMRRANE---KFSKNITKRGKVPKSLKKKEKKYPVGPWLLGLFIFVVCGSAIFQIIRSIQ 62 (63)
T ss_pred HHHHHHHH---HHHhhHHhcCCCccccccccccCCcCHHHHhhhheeeEcHHHHHHHHHHh
Confidence 34466666 99999999999999988888899999999999999999999999999986
No 3
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=89.37 E-value=0.94 Score=26.54 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=28.0
Q ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHh
Q 035282 34 SDYPIGPILLGFFVFVVLGSSLFQIIRTATS 64 (68)
Q Consensus 34 ~k~pV~p~~l~lfiFVV~Gs~ifeiir~~~~ 64 (68)
...|.|+|++++....++|-+++++++-+..
T Consensus 41 ~~~p~G~~ll~~vg~gli~~gi~~~~~a~~~ 71 (73)
T PF06724_consen 41 LEQPFGRWLLGAVGLGLIGYGIWQFVKAVYR 71 (73)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3799999999999999999999999987653
No 4
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=82.72 E-value=2.8 Score=28.37 Aligned_cols=57 Identities=18% Similarity=0.343 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhhh-hcCCCCCccc-cCCCCCCchHHHHHHHHH--HHHhHHHHHHHHHH
Q 035282 6 RLAERKNARFQKNVT-RRGSVPESSA-KKGSDYPIGPILLGFFVF--VVLGSSLFQIIRTA 62 (68)
Q Consensus 6 R~aN~k~~Kf~kni~-krGkv~~~~~-kk~~k~pV~p~~l~lfiF--VV~Gs~ifeiir~~ 62 (68)
+.++.|..-|+.+.. +.-.+..+.. ....+.|++|.|+++++. ++++|+|.=++|-+
T Consensus 83 ~v~~~k~~LFs~~y~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~g~ll~i~~giy~~~r~~ 143 (145)
T PF10661_consen 83 TVKETKDSLFSSDYQVKADEVASSPNTENKTKKPISPTILLSIGGILLAICGGIYVVLRKV 143 (145)
T ss_pred hHHHHHHHhhccccccchhhhhcchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555566665442 2211111111 123578999999887754 44557787777754
No 5
>PHA02513 V1 structural protein V1; Reviewed
Probab=82.57 E-value=1.5 Score=29.80 Aligned_cols=27 Identities=37% Similarity=0.871 Sum_probs=20.5
Q ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHH
Q 035282 34 SDYPIGPILLGFFVFVVLGSSLFQIIRT 61 (68)
Q Consensus 34 ~k~pV~p~~l~lfiFVV~Gs~ifeiir~ 61 (68)
+...++ .++++|+|+++|-.+|+.|-+
T Consensus 63 e~~n~k-~ii~L~IFIliGivl~~pI~s 89 (135)
T PHA02513 63 EGTNIG-VLLGLFIFILIGIVLLPVITS 89 (135)
T ss_pred ccccHH-HHHHHHHHHHHHHHHhhHHHH
Confidence 445554 468999999999999995543
No 6
>PHA00739 V3 structural protein VP3
Probab=81.35 E-value=1.3 Score=28.54 Aligned_cols=19 Identities=37% Similarity=0.775 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQII 59 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifeii 59 (68)
-.+++++|.++|-.+|+-|
T Consensus 7 ~iifL~iFi~iGivlf~pI 25 (92)
T PHA00739 7 QIIFLFIFILIGIVLFQPI 25 (92)
T ss_pred HHHHHHHHHHHHHhhcchh
Confidence 4689999999999999954
No 7
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=79.69 E-value=3.3 Score=26.08 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 035282 40 PILLGFFVFVVLGSSLFQIIRTA 62 (68)
Q Consensus 40 p~~l~lfiFVV~Gs~ifeiir~~ 62 (68)
-|.+..+++++++-+++++||+.
T Consensus 18 l~llvc~~~liv~~AlL~~IqLC 40 (82)
T PF02723_consen 18 LWLLVCLVVLIVCIALLQLIQLC 40 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999999974
No 8
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=77.54 E-value=3.4 Score=22.97 Aligned_cols=29 Identities=7% Similarity=0.196 Sum_probs=24.4
Q ss_pred CCCchHHHHHHHHHHHHhHHHHHHHHHHH
Q 035282 35 DYPIGPILLGFFVFVVLGSSLFQIIRTAT 63 (68)
Q Consensus 35 k~pV~p~~l~lfiFVV~Gs~ifeiir~~~ 63 (68)
.+.-+||++.+++++=+.+++..+++.++
T Consensus 27 ~~~t~p~~~~~g~llG~~~g~~~~~~~~k 55 (55)
T PF09527_consen 27 WFGTSPWFTLIGLLLGIAAGFYNVYRLVK 55 (55)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45568999999999999999999998763
No 9
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=76.28 E-value=3.8 Score=23.41 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=17.8
Q ss_pred CCCCchHHHHHHHHHHHHhHHHH
Q 035282 34 SDYPIGPILLGFFVFVVLGSSLF 56 (68)
Q Consensus 34 ~k~pV~p~~l~lfiFVV~Gs~if 56 (68)
-..|+++||+.+|..-++=+.+.
T Consensus 16 ~dnplP~ww~~~f~~tivfa~~Y 38 (51)
T PF14715_consen 16 LDNPLPRWWLWLFYGTIVFAVGY 38 (51)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHH
Confidence 47899999999998766655543
No 10
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=74.51 E-value=3.1 Score=24.43 Aligned_cols=22 Identities=32% Similarity=0.751 Sum_probs=17.2
Q ss_pred CchHHHHHHHHHHHHhHHHHHH
Q 035282 37 PIGPILLGFFVFVVLGSSLFQI 58 (68)
Q Consensus 37 pV~p~~l~lfiFVV~Gs~ifei 58 (68)
.+|..+++++|||++|=.-+-+
T Consensus 5 tiG~~~~~~~I~~lIgfity~m 26 (53)
T PF13131_consen 5 TIGIILFTIFIFFLIGFITYKM 26 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999655543
No 11
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=73.66 E-value=2.3 Score=31.39 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHH
Q 035282 38 IGPILLGFFVFVVLGSSLFQIIRTAT 63 (68)
Q Consensus 38 V~p~~l~lfiFVV~Gs~ifeiir~~~ 63 (68)
+=-|+|+++++.|.|.+||++|-..-
T Consensus 46 ~I~kvL~IliYcVTg~sllsli~Vtv 71 (235)
T PF11359_consen 46 EIMKVLAILIYCVTGFSLLSLIVVTV 71 (235)
T ss_pred HHHHHHhhheeeehhHHHHHHHHHHH
Confidence 34589999999999999999987653
No 12
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.82 E-value=2.8 Score=35.16 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=13.1
Q ss_pred CCCchHHHHHHHHHHHHhHHHH
Q 035282 35 DYPIGPILLGFFVFVVLGSSLF 56 (68)
Q Consensus 35 k~pV~p~~l~lfiFVV~Gs~if 56 (68)
.-=||.||||+ +|||++.+
T Consensus 315 PrWIGAWWlGF---Li~g~~~~ 333 (735)
T KOG3626|consen 315 PRWIGAWWLGF---LICGALLL 333 (735)
T ss_pred cchhhHHHHHH---HHHHHHHH
Confidence 34489999985 56676654
No 13
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=64.75 E-value=2.1 Score=27.09 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 035282 40 PILLGFFVFVVLGSSLFQIIRTAT 63 (68)
Q Consensus 40 p~~l~lfiFVV~Gs~ifeiir~~~ 63 (68)
|+++.+++++++|-++|.+++.+.
T Consensus 1 P~~f~i~~~iii~~~~~~~~~~~~ 24 (110)
T PF10694_consen 1 PIFFIIVFIIIIGIIIFVFIRQIR 24 (110)
T ss_dssp ------------------------
T ss_pred CEEeHHhhhhhhHHHHHHHHHHHH
Confidence 778888999999999999887654
No 14
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=64.10 E-value=8.1 Score=27.92 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=19.0
Q ss_pred CCCCchHHHHHHHHHHHHhHHHH
Q 035282 34 SDYPIGPILLGFFVFVVLGSSLF 56 (68)
Q Consensus 34 ~k~pV~p~~l~lfiFVV~Gs~if 56 (68)
-..|+++||+.+|..-++=+++.
T Consensus 22 ~~n~~P~ww~~~f~~~i~~~~~y 44 (285)
T TIGR00782 22 YDNPLPRWWLWTFYATIVWGFGY 44 (285)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHH
Confidence 47899999999999877666665
No 15
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=64.01 E-value=6.8 Score=22.76 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 035282 40 PILLGFFVFVVLGSSLFQ 57 (68)
Q Consensus 40 p~~l~lfiFVV~Gs~ife 57 (68)
+|+..++|++|+|..+=-
T Consensus 2 ~~~~wlIIviVlgvIigN 19 (55)
T PF11446_consen 2 TWNPWLIIVIVLGVIIGN 19 (55)
T ss_pred cchhhHHHHHHHHHHHhH
Confidence 344555555555554433
No 16
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=60.90 E-value=11 Score=26.73 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQI 58 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifei 58 (68)
||+.+++|+||+..|+=+
T Consensus 228 ~~~~~~i~~v~~~Fi~mv 245 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFIMMV 245 (251)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999776643
No 17
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=60.73 E-value=9.2 Score=27.50 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=12.9
Q ss_pred CCCCCchHHHHHHHHHHHHhHHH
Q 035282 33 GSDYPIGPILLGFFVFVVLGSSL 55 (68)
Q Consensus 33 ~~k~pV~p~~l~lfiFVV~Gs~i 55 (68)
++|++++..++.++|- |+||+.
T Consensus 155 ekks~~g~ll~lllv~-l~gGGa 176 (218)
T PF14283_consen 155 EKKSGMGSLLLLLLVA-LIGGGA 176 (218)
T ss_pred ccccchHHHHHHHHHH-Hhhcce
Confidence 3577888855554444 455543
No 18
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.16 E-value=15 Score=24.54 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHH
Q 035282 38 IGPILLGFFVFVVLGSSLFQIIRTAT 63 (68)
Q Consensus 38 V~p~~l~lfiFVV~Gs~ifeiir~~~ 63 (68)
-+||-|.+|+.+=+|.+++-|+|.+-
T Consensus 72 TsPwglIv~lllGf~AG~lnv~Rsag 97 (116)
T COG5336 72 TSPWGLIVFLLLGFGAGVLNVLRSAG 97 (116)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35776766666777788899998864
No 19
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=54.99 E-value=20 Score=29.05 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=27.6
Q ss_pred CCCchHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 035282 35 DYPIGPILLGFFVFVVLGSSLFQIIRTATSRG 66 (68)
Q Consensus 35 k~pV~p~~l~lfiFVV~Gs~ifeiir~~~~~~ 66 (68)
-..+-+.|+++++|+|+.-+++.+++..+..+
T Consensus 442 ~~~~~~~~~~l~~~lv~~~~~r~~i~~~~~~~ 473 (545)
T COG1766 442 LDSLIPVALYLVVFLVLFIIVRPVIRPRRRRG 473 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45677889999999999999999999987755
No 20
>PF10861 DUF2784: Protein of Unknown function (DUF2784); InterPro: IPR021218 This is a family of uncharacterised protein. The function is not known however it is conserved in Bacteria.
Probab=53.25 E-value=12 Score=24.37 Aligned_cols=14 Identities=50% Similarity=0.740 Sum_probs=11.6
Q ss_pred HHHHHHHHHhHHHH
Q 035282 43 LGFFVFVVLGSSLF 56 (68)
Q Consensus 43 l~lfiFVV~Gs~if 56 (68)
+++++|||+|+.+.
T Consensus 13 ~~filFvv~G~~l~ 26 (112)
T PF10861_consen 13 LLFILFVVFGGFLA 26 (112)
T ss_pred HHHHHHHHHHHHHH
Confidence 57889999999864
No 21
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=44.91 E-value=7.2 Score=30.77 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=0.0
Q ss_pred CchHHHHHHHHH
Q 035282 37 PIGPILLGFFVF 48 (68)
Q Consensus 37 pV~p~~l~lfiF 48 (68)
=||.||||++++
T Consensus 224 WvGAWWLGfli~ 235 (539)
T PF03137_consen 224 WVGAWWLGFLIC 235 (539)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 399999998665
No 22
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=44.87 E-value=37 Score=21.83 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=18.5
Q ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHH
Q 035282 34 SDYPIGPILLGFFVFVVLGSSLFQIIRTAT 63 (68)
Q Consensus 34 ~k~pV~p~~l~lfiFVV~Gs~ifeiir~~~ 63 (68)
+++|-+|+|...|+++=+..+++-+...+.
T Consensus 68 ~~~~t~~~~tl~~lllGv~~G~~n~w~wi~ 97 (100)
T TIGR02230 68 RHYPSPFSWTLTMLIVGVVIGCLNAWHWVS 97 (100)
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667777766666666666666555443
No 23
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=43.71 E-value=34 Score=21.24 Aligned_cols=22 Identities=32% Similarity=0.603 Sum_probs=18.5
Q ss_pred CCCchHHHHHHHHHHHHhHHHH
Q 035282 35 DYPIGPILLGFFVFVVLGSSLF 56 (68)
Q Consensus 35 k~pV~p~~l~lfiFVV~Gs~if 56 (68)
-+||+|-+.-.+.+|+++-+++
T Consensus 8 ~sPV~p~~~p~La~vll~iGl~ 29 (77)
T PF05251_consen 8 TSPVNPALYPHLAVVLLAIGLF 29 (77)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999998885554
No 24
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=41.88 E-value=8.5 Score=22.40 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQI 58 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifei 58 (68)
||+.+++++++..+++..
T Consensus 1 ~~~~ili~~vi~~l~~~~ 18 (110)
T PF06480_consen 1 IILYILIILVILLLFNFF 18 (110)
T ss_dssp ------------------
T ss_pred CcceehhHHHHHHHHHHH
Confidence 677788887777776654
No 25
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=41.20 E-value=24 Score=18.50 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=9.5
Q ss_pred CCchHHHHHHHHHH
Q 035282 36 YPIGPILLGFFVFV 49 (68)
Q Consensus 36 ~pV~p~~l~lfiFV 49 (68)
-++|-|||+++.-+
T Consensus 3 k~Lg~~~lAi~c~L 16 (30)
T PF11466_consen 3 KHLGGWWLAIVCVL 16 (30)
T ss_dssp SS-SSHHHHHHHHH
T ss_pred cchhhHHHHHHHHH
Confidence 47889999876543
No 26
>PHA02975 hypothetical protein; Provisional
Probab=41.02 E-value=85 Score=19.26 Aligned_cols=22 Identities=18% Similarity=0.319 Sum_probs=14.2
Q ss_pred CCCchHHHHHHHHHHHHhHHHH
Q 035282 35 DYPIGPILLGFFVFVVLGSSLF 56 (68)
Q Consensus 35 k~pV~p~~l~lfiFVV~Gs~if 56 (68)
++.-..||+.+++|++|.-.+.
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~ 61 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFT 61 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHH
Confidence 4555566667777777766543
No 27
>PF14138 COX16: Cytochrome c oxidase assembly protein COX16
Probab=39.66 E-value=45 Score=20.37 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=13.9
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 035282 44 GFFVFVVLGSSLFQIIRTA 62 (68)
Q Consensus 44 ~lfiFVV~Gs~ifeiir~~ 62 (68)
=|++++|.||..+.-+..+
T Consensus 6 Pf~~liV~GS~gL~~ftq~ 24 (80)
T PF14138_consen 6 PFLLLIVGGSFGLSEFTQI 24 (80)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4788889999888765543
No 28
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=37.89 E-value=29 Score=23.19 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=10.9
Q ss_pred CCchHHHHHHHHHHH
Q 035282 36 YPIGPILLGFFVFVV 50 (68)
Q Consensus 36 ~pV~p~~l~lfiFVV 50 (68)
.=|.-+.|+||+|||
T Consensus 10 lLi~vIglAL~aFIv 24 (145)
T PF13623_consen 10 LLIIVIGLALFAFIV 24 (145)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667788888888
No 29
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=37.62 E-value=49 Score=25.17 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQIIRTAT 63 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifeiir~~~ 63 (68)
-||+++.-+|++|.+|...|-.+
T Consensus 7 ~~livig~i~i~~il~~~~~r~r 29 (293)
T PRK00269 7 EWLIVIGIIVIAGILFDGWRRMR 29 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999888763
No 30
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=36.83 E-value=50 Score=17.18 Aligned_cols=18 Identities=22% Similarity=0.633 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 035282 42 LLGFFVFVVLGSSLFQII 59 (68)
Q Consensus 42 ~l~lfiFVV~Gs~ifeii 59 (68)
.+++++|++|-++.+=..
T Consensus 14 ~~g~~l~~~~~tG~~~~f 31 (37)
T PF13706_consen 14 ILGLLLFVIFLTGAVMVF 31 (37)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 467788888877665433
No 31
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=35.86 E-value=89 Score=17.95 Aligned_cols=23 Identities=22% Similarity=0.415 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHh
Q 035282 42 LLGFFVFVVLGSSLFQIIRTATS 64 (68)
Q Consensus 42 ~l~lfiFVV~Gs~ifeiir~~~~ 64 (68)
++.+-||.-+|=+|.|=++-++.
T Consensus 12 vIil~If~~iGl~IyQkikqIrg 34 (49)
T PF11044_consen 12 VIILGIFAWIGLSIYQKIKQIRG 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777899999998888763
No 32
>PF05365 UCR_UQCRX_QCR9: Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like; InterPro: IPR008027 The UQCRX/QCR9 protein is the 9/10 subunit of complex III, and is a protein of about 7 kDa. Deletion of QCR9 results in the inability of Saccharomyces cerevisiae to grow on a fermentable carbon source []. The protein is part of the mitchondrial respiratory chain. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006122 mitochondrial electron transport, ubiquinol to cytochrome c, 0005740 mitochondrial envelope; PDB: 3CX5_T 2IBZ_I 1KYO_I 3CXH_T 1EZV_I 1P84_I 1KB9_I 3H1L_W 3L71_W 3L73_W ....
Probab=34.97 E-value=49 Score=19.10 Aligned_cols=16 Identities=13% Similarity=0.378 Sum_probs=12.7
Q ss_pred HHHHHHHHhHHHHHHH
Q 035282 44 GFFVFVVLGSSLFQII 59 (68)
Q Consensus 44 ~lfiFVV~Gs~ifeii 59 (68)
.+++++++|+.+||..
T Consensus 14 ~y~~~i~~gaf~fe~~ 29 (55)
T PF05365_consen 14 TYVLTIFAGAFFFERA 29 (55)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677889999999954
No 33
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=34.92 E-value=1.5e+02 Score=20.21 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhhhh---cCCCCCccccCCCCCCchHH
Q 035282 4 SKRLAERKNARFQKNVTR---RGSVPESSAKKGSDYPIGPI 41 (68)
Q Consensus 4 ~qR~aN~k~~Kf~kni~k---rGkv~~~~~kk~~k~pV~p~ 41 (68)
.++++|+=.+.|.+.+.+ .+++.-=...+....|++|.
T Consensus 133 A~~ian~~~~~~~~~~~~~~~~~~~~vl~~a~~p~~p~~P~ 173 (226)
T TIGR01006 133 ASKIANSLREVASKKIPKITNVSDVTTLEEAKPATTPSSPN 173 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcEEeecCCCCCCCCCCc
Confidence 357888766677766653 33322111122245677665
No 34
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=34.51 E-value=80 Score=20.57 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 035282 40 PILLGFFVFVVLGSSLFQ 57 (68)
Q Consensus 40 p~~l~lfiFVV~Gs~ife 57 (68)
|..++++.++|.|+++-=
T Consensus 60 PLilvil~s~v~G~Li~~ 77 (98)
T COG5416 60 PLILVILGAAVVGALIAM 77 (98)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456777888888887643
No 35
>PRK09040 hypothetical protein; Provisional
Probab=34.45 E-value=50 Score=23.19 Aligned_cols=18 Identities=39% Similarity=0.731 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQI 58 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifei 58 (68)
.++++|+|+.++....|+
T Consensus 24 ~Lm~iFlli~v~~~~~~~ 41 (214)
T PRK09040 24 VLLGAFVLILVGVIGVQL 41 (214)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467888888887665554
No 36
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=34.14 E-value=57 Score=21.38 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhHHH-HHHHHHHHh
Q 035282 42 LLGFFVFVVLGSSL-FQIIRTATS 64 (68)
Q Consensus 42 ~l~lfiFVV~Gs~i-feiir~~~~ 64 (68)
+-=+|||.|-||+| +|..|....
T Consensus 79 l~E~fiF~Va~~li~~E~~Rs~~k 102 (134)
T PF07047_consen 79 LGEAFIFSVAAGLIIYEYWRSARK 102 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44478886666554 888887654
No 37
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=33.95 E-value=94 Score=18.83 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQIIR 60 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifeiir 60 (68)
+.+.+++++++|+.-+--++
T Consensus 12 f~~~~~l~~~~~~~~~~~l~ 31 (181)
T PF12729_consen 12 FGLIILLLLIVGIVGLYSLS 31 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554443333
No 38
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=33.84 E-value=50 Score=20.01 Aligned_cols=15 Identities=20% Similarity=0.567 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhHHH
Q 035282 41 ILLGFFVFVVLGSSL 55 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~i 55 (68)
.|++|++|+.|=..|
T Consensus 73 i~~~~~~f~~~v~yI 87 (92)
T PF03908_consen 73 IFFAFLFFLLVVLYI 87 (92)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555544433
No 39
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=33.80 E-value=96 Score=18.04 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=15.9
Q ss_pred HHHHHHH-HH-HHhHHHHHHHHHHHh
Q 035282 41 ILLGFFV-FV-VLGSSLFQIIRTATS 64 (68)
Q Consensus 41 ~~l~lfi-FV-V~Gs~ifeiir~~~~ 64 (68)
|||.+|. || ++-.+++|.|.++..
T Consensus 6 ~wlvvfav~~flfd~limQwiEl~tt 31 (53)
T PF10831_consen 6 WWLVVFAVFVFLFDTLIMQWIELITT 31 (53)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5665543 33 467888999888754
No 40
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=33.69 E-value=1.1e+02 Score=18.91 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHhHHH
Q 035282 39 GPILLGFFVFVVLGSSL 55 (68)
Q Consensus 39 ~p~~l~lfiFVV~Gs~i 55 (68)
.-||+..++||+|.-.+
T Consensus 48 ~~~~ii~ii~v~ii~~l 64 (72)
T PF12575_consen 48 WIILIISIIFVLIIVLL 64 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45778888888888766
No 41
>PHA02844 putative transmembrane protein; Provisional
Probab=33.65 E-value=91 Score=19.42 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=13.0
Q ss_pred CCCchHHHHHHHHHHHHhHHHH
Q 035282 35 DYPIGPILLGFFVFVVLGSSLF 56 (68)
Q Consensus 35 k~pV~p~~l~lfiFVV~Gs~if 56 (68)
+..-..+|+.+++|++|.-.++
T Consensus 44 ~~~~~~~~ii~i~~v~~~~~~~ 65 (75)
T PHA02844 44 CSSSTKIWILTIIFVVFATFLT 65 (75)
T ss_pred CChhHHHHHHHHHHHHHHHHHH
Confidence 3444555666667777765543
No 42
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=32.80 E-value=42 Score=19.37 Aligned_cols=15 Identities=7% Similarity=0.146 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHhH
Q 035282 39 GPILLGFFVFVVLGS 53 (68)
Q Consensus 39 ~p~~l~lfiFVV~Gs 53 (68)
|+++..++-|+-||=
T Consensus 2 s~~~~ilLsiiT~GI 16 (75)
T PF14018_consen 2 SLLKVILLSIITCGI 16 (75)
T ss_pred cHHHHHHHHHHHHHH
Confidence 566777777777763
No 43
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=32.79 E-value=2e+02 Score=21.22 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhhhhcCCC---CCccccCC-CCCCchHHH
Q 035282 4 SKRLAERKNARFQKNVTRRGSV---PESSAKKG-SDYPIGPIL 42 (68)
Q Consensus 4 ~qR~aN~k~~Kf~kni~krGkv---~~~~~kk~-~k~pV~p~~ 42 (68)
..++||.=.+.|++-+...=+| .--..... ..+||+|-.
T Consensus 130 Aa~IAN~~~~vf~~~i~~im~vd~v~Ils~A~~~~~spvsP~~ 172 (226)
T COG3944 130 AAEIANSISEVFAKVIPEIMNVDNVSILSEAEASPSSPVSPKV 172 (226)
T ss_pred HHHHHHHHHHHHHHhhHhhcCcCceeeecccccCCCCCCChHH
Confidence 3478998888898877744443 32222222 589999964
No 44
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=32.40 E-value=1.1e+02 Score=17.93 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQIIRT 61 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifeiir~ 61 (68)
|--.++|++|+||-...+=|.
T Consensus 5 wywivli~lv~~gy~~hmkry 25 (54)
T PF13260_consen 5 WYWIVLIVLVVVGYFCHMKRY 25 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444566777778877776554
No 45
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=31.75 E-value=92 Score=20.85 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHh
Q 035282 40 PILLGFFVFVVLGSSLFQIIRTATS 64 (68)
Q Consensus 40 p~~l~lfiFVV~Gs~ifeiir~~~~ 64 (68)
.++.+.++|+.+++++|-.+|..-.
T Consensus 76 ~v~~~~~~~i~~s~~l~~~~r~~~~ 100 (142)
T PF02936_consen 76 KVFGGVFIFIGFSVLLFIWQRSYVY 100 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677889999999999999987544
No 46
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=31.46 E-value=58 Score=20.34 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=22.1
Q ss_pred CchHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 035282 37 PIGPILLGFFVFVVLGSSLFQIIRTATSRG 66 (68)
Q Consensus 37 pV~p~~l~lfiFVV~Gs~ifeiir~~~~~~ 66 (68)
.+|-.+.-++.|+++--+..|+++....++
T Consensus 51 N~GIli~f~i~f~~~~~~~~e~~~~~~~~~ 80 (103)
T PF06422_consen 51 NFGILIAFWIFFIVLTLLATEFIKFEKSGG 80 (103)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 456666677778888888889988766654
No 47
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=31.31 E-value=41 Score=22.87 Aligned_cols=20 Identities=30% Similarity=0.808 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 035282 40 PILLGFFVFVVLGSSLFQIIR 60 (68)
Q Consensus 40 p~~l~lfiFVV~Gs~ifeiir 60 (68)
-.+++||.|.+|| .++--+|
T Consensus 48 L~vmgfFgff~~g-ImlsyvR 67 (129)
T PF02060_consen 48 LVVMGFFGFFTVG-IMLSYVR 67 (129)
T ss_dssp HHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHH
Confidence 3456777777765 4444443
No 48
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=30.65 E-value=60 Score=21.55 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=16.2
Q ss_pred CCchHHHHHHHHHHHHhHHHHH
Q 035282 36 YPIGPILLGFFVFVVLGSSLFQ 57 (68)
Q Consensus 36 ~pV~p~~l~lfiFVV~Gs~ife 57 (68)
.-|...+|||++|.-+|=+++=
T Consensus 10 a~Ia~mVlGFi~fWPlGla~La 31 (115)
T PF11014_consen 10 AWIAAMVLGFIVFWPLGLALLA 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777888888888877764
No 49
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=30.02 E-value=1.1e+02 Score=20.72 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhc
Q 035282 40 PILLGFFVFVVLGSSLFQIIRTATSR 65 (68)
Q Consensus 40 p~~l~lfiFVV~Gs~ifeiir~~~~~ 65 (68)
.+|+.+++++++|++..=++..++++
T Consensus 8 rl~~~~~~~~~~~~~~~L~~~a~~~~ 33 (148)
T PRK13254 8 RLLIILGALAALGLAVALVLYALRQN 33 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56777777777777776666665543
No 50
>PF05449 DUF754: Protein of unknown function (DUF754); InterPro: IPR008473 This entry is represented by Bacteriophage D3, Orf90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.90 E-value=1.3e+02 Score=18.48 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=21.1
Q ss_pred CCCchHHHHHHHHHHHHhHHHHHHHH
Q 035282 35 DYPIGPILLGFFVFVVLGSSLFQIIR 60 (68)
Q Consensus 35 k~pV~p~~l~lfiFVV~Gs~ifeiir 60 (68)
.+--..-|++-++.+..||.-++++-
T Consensus 23 rhr~~~s~lA~lli~~~~~~~i~~l~ 48 (83)
T PF05449_consen 23 RHRPWISWLAYLLIVAYGSVPIRILF 48 (83)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556778999999999999998875
No 51
>MTH00093 ND4L NADH dehydrogenase subunit 4L; Provisional
Probab=29.82 E-value=56 Score=19.72 Aligned_cols=16 Identities=31% Similarity=0.552 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhHHH
Q 035282 40 PILLGFFVFVVLGSSL 55 (68)
Q Consensus 40 p~~l~lfiFVV~Gs~i 55 (68)
..++.+++|.||.|++
T Consensus 43 ~~~l~~L~~~vCE~~l 58 (77)
T MTH00093 43 MMFFYFMCFSVISSVL 58 (77)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3577888999999887
No 52
>PRK10332 hypothetical protein; Provisional
Probab=29.80 E-value=1.6e+02 Score=19.18 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=27.2
Q ss_pred CCCCCchHHHHHHHHHHHHhHHHHHHHHHHHh
Q 035282 33 GSDYPIGPILLGFFVFVVLGSSLFQIIRTATS 64 (68)
Q Consensus 33 ~~k~pV~p~~l~lfiFVV~Gs~ifeiir~~~~ 64 (68)
...+.+.-.++++.||+++..++....+.+.+
T Consensus 8 q~GFsL~EvlvAm~i~~i~~~al~~~~p~L~~ 39 (107)
T PRK10332 8 QRGFSLPEVLLAMVLMVMIVTALSGYQRTLMN 39 (107)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999888777654
No 53
>TIGR01711 gspJ general secretion pathway protein J. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=29.57 E-value=93 Score=21.31 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHh
Q 035282 41 ILLGFFVFVVLGSSLFQIIRTATS 64 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifeiir~~~~ 64 (68)
.++++.||.+++.+.++.+..+.+
T Consensus 8 llval~I~ail~~~~~~~~~~~~~ 31 (192)
T TIGR01711 8 LLVAIAIFASLSLGAYQVLDSVMQ 31 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999998877544
No 54
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=29.16 E-value=67 Score=22.76 Aligned_cols=20 Identities=30% Similarity=0.653 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQIIR 60 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifeiir 60 (68)
..+.+++|.++|..+++++.
T Consensus 50 a~~ill~f~~~G~~il~~fg 69 (203)
T COG2095 50 ALLILLVFLLLGEGILRFFG 69 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 46778999999999999654
No 55
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=28.71 E-value=98 Score=19.87 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=18.1
Q ss_pred CCchHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 035282 36 YPIGPILLGFFVFVVLGSSLFQIIRTATSR 65 (68)
Q Consensus 36 ~pV~p~~l~lfiFVV~Gs~ifeiir~~~~~ 65 (68)
+=|=-.|+++-+||++ +|=||-.++-.
T Consensus 37 sIVI~FWv~LA~FV~~---lF~iL~~ms~s 63 (90)
T PF15183_consen 37 SIVIAFWVSLAAFVVF---LFLILLYMSWS 63 (90)
T ss_pred eeehhHHHHHHHHHHH---HHHHHHHHhcc
Confidence 3355789999999975 55555555443
No 56
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=28.61 E-value=59 Score=24.18 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHh
Q 035282 39 GPILLGFFVFVVLGSSLFQIIRTATS 64 (68)
Q Consensus 39 ~p~~l~lfiFVV~Gs~ifeiir~~~~ 64 (68)
|-...++|.|++++++++=+++.+++
T Consensus 61 Ggg~~gl~~iLIl~~Ia~~vv~~~r~ 86 (289)
T PF07466_consen 61 GGGFGGLFDILILFGIAFFVVRFFRR 86 (289)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHh
Confidence 33334566666666666666666553
No 57
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=27.91 E-value=72 Score=18.60 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHH
Q 035282 39 GPILLGFFVFVVLGSSLFQIIRTA 62 (68)
Q Consensus 39 ~p~~l~lfiFVV~Gs~ifeiir~~ 62 (68)
.|||+.| |+.|.+|--+-.+
T Consensus 1 ~PwWvY~----vi~gI~~S~ym~v 20 (52)
T PF14147_consen 1 IPWWVYF----VIAGIIFSGYMAV 20 (52)
T ss_pred CcchHHH----HHHHHHHHHHHHH
Confidence 3788754 3445555544433
No 58
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=26.95 E-value=93 Score=15.99 Aligned_cols=19 Identities=47% Similarity=0.539 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHH
Q 035282 39 GPILLGFFVFVVLGSSLFQII 59 (68)
Q Consensus 39 ~p~~l~lfiFVV~Gs~ifeii 59 (68)
+|.++...+| +||++|=+.
T Consensus 8 a~i~ly~~l~--~~s~~~Li~ 26 (29)
T TIGR03063 8 AQIGLYAVLF--LGSGLFLIR 26 (29)
T ss_pred hhHHHHHHHH--HHHHHHHhh
Confidence 3444555555 446665443
No 59
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=26.73 E-value=85 Score=20.41 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=9.2
Q ss_pred CCchHHHHHHHHHHHHhH
Q 035282 36 YPIGPILLGFFVFVVLGS 53 (68)
Q Consensus 36 ~pV~p~~l~lfiFVV~Gs 53 (68)
.|..|.|-.+++.++++.
T Consensus 17 wP~a~GWwll~~lll~~~ 34 (146)
T PF14316_consen 17 WPLAPGWWLLLALLLLLL 34 (146)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 455566655555444433
No 60
>PRK10739 putative antibiotic transporter; Provisional
Probab=26.48 E-value=84 Score=22.00 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQIIR 60 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifeiir 60 (68)
..+.+++|.++|..+++++.
T Consensus 47 a~~ill~f~~~G~~iL~~fG 66 (197)
T PRK10739 47 ALLVMLVFLFAGEKILAFLN 66 (197)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 45677899999999998653
No 61
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.14 E-value=98 Score=18.24 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHHHHHhH
Q 035282 34 SDYPIGPILLGFFVFVVLGS 53 (68)
Q Consensus 34 ~k~pV~p~~l~lfiFVV~Gs 53 (68)
++-|-=||.|.+++-+|+.|
T Consensus 24 ER~PFrP~~Ll~~li~Vv~g 43 (55)
T PF11293_consen 24 ERKPFRPWRLLIVLIVVVIG 43 (55)
T ss_pred ccCCcchHHHHHHHHHHHHH
Confidence 45688888877666655543
No 62
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=25.51 E-value=64 Score=22.32 Aligned_cols=20 Identities=20% Similarity=0.379 Sum_probs=12.0
Q ss_pred chHHHHHHHHHHHHhHHHHH
Q 035282 38 IGPILLGFFVFVVLGSSLFQ 57 (68)
Q Consensus 38 V~p~~l~lfiFVV~Gs~ife 57 (68)
+=.+++++++.+++|++++=
T Consensus 19 l~~iIi~~~llll~~~G~~~ 38 (182)
T PRK08455 19 LLIIIIGVVVLLLLIVGVIA 38 (182)
T ss_pred eEEehHHHHHHHHHHHHHHH
Confidence 34456666777777666443
No 63
>PRK08156 type III secretion system protein SpaS; Validated
Probab=25.44 E-value=1.6e+02 Score=22.73 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=17.9
Q ss_pred hhhcCCCCCccccCCCCCCchHHHHHHHHHHHHhHH
Q 035282 19 VTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSS 54 (68)
Q Consensus 19 i~krGkv~~~~~kk~~k~pV~p~~l~lfiFVV~Gs~ 54 (68)
..+.|+|+++ .+.+..-.++++++++...+.
T Consensus 16 ARekGqV~kS-----~el~~a~~ll~~~~~l~~~~~ 46 (361)
T PRK08156 16 SAKKGQSFKS-----KDLITAVVLLGGIAYLVSFGS 46 (361)
T ss_pred HHHcCCCCch-----HhHHHHHHHHHHHHHHHHHhh
Confidence 3588998877 235555555665555544433
No 64
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.22 E-value=1.6e+02 Score=22.99 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=21.5
Q ss_pred hhcCCCCCccccCCCCCCchHHHHH-HHHHHHHhHHHHH
Q 035282 20 TRRGSVPESSAKKGSDYPIGPILLG-FFVFVVLGSSLFQ 57 (68)
Q Consensus 20 ~krGkv~~~~~kk~~k~pV~p~~l~-lfiFVV~Gs~ife 57 (68)
.+.|+++++ .+.|..-.+|+ ++++.+.|+.+..
T Consensus 22 rekG~v~kS-----~el~~a~~ll~g~~~l~~~~~~~~~ 55 (363)
T COG1377 22 REKGQVPKS-----RELTSAASLLVGFLLLFFFGSYFAR 55 (363)
T ss_pred HHcCCCccc-----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888777 33566666555 7777777765544
No 65
>PRK13664 hypothetical protein; Provisional
Probab=25.03 E-value=1.5e+02 Score=17.77 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQIIRTA 62 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifeiir~~ 62 (68)
||+.+++++| |.|...|.-+
T Consensus 8 WWilill~lv--G~i~N~iK~l 27 (62)
T PRK13664 8 WWILVLVFLV--GVLLNVIKDL 27 (62)
T ss_pred HHHHHHHHHH--HHHHHHHHHH
Confidence 6664554443 4555544433
No 66
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=24.75 E-value=79 Score=20.06 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=8.1
Q ss_pred chHHHHHHHHH
Q 035282 38 IGPILLGFFVF 48 (68)
Q Consensus 38 V~p~~l~lfiF 48 (68)
++-|+.-+|||
T Consensus 4 lPDWlFLlFif 14 (87)
T PF07436_consen 4 LPDWLFLLFIF 14 (87)
T ss_pred chhHHHHHHHH
Confidence 45677778888
No 67
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=24.69 E-value=1.2e+02 Score=16.11 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHhHHHHHHHH
Q 035282 38 IGPILLGFFVFVVLGSSLFQIIR 60 (68)
Q Consensus 38 V~p~~l~lfiFVV~Gs~ifeiir 60 (68)
+-.+...+.+.+-+||.++..|.
T Consensus 12 iT~v~v~lM~i~tvg~v~~~al~ 34 (35)
T PF13253_consen 12 ITMVVVWLMLILTVGSVVASALS 34 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666777788998887653
No 68
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=24.33 E-value=1.5e+02 Score=20.03 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=22.2
Q ss_pred HHhhhhhhcCCCCCccccCCCCCCchHHHHHHHHHHHHh
Q 035282 14 RFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLG 52 (68)
Q Consensus 14 Kf~kni~krGkv~~~~~kk~~k~pV~p~~l~lfiFVV~G 52 (68)
|-..||.+|+-++= +-++||.++.+++||-++
T Consensus 84 kRa~~Ir~R~~~py-------DD~~GP~lv~vvL~vali 115 (126)
T COG5264 84 KRAVNIRQRSAGPY-------DDRLGPTLVCVVLLVALI 115 (126)
T ss_pred HHHHHHHhcCCCCC-------ccccCCchhHHHHHHHHH
Confidence 44556777764332 368999999999988554
No 69
>TIGR03064 sortase_srtB sortase, SrtB family. Members of this transpeptidase family are, in most cases, designated sortase B, product of the srtB gene. This protein shows only distant similarity to the sortase A family, for which there may be several members in a single bacterial genome. Typical SrtB substrate motifs include NAKTN, NPKSS, etc, and otherwise resemble the LPXTG sorting signals recognized by sortase A proteins.
Probab=23.94 E-value=1e+02 Score=22.10 Aligned_cols=18 Identities=39% Similarity=0.220 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQI 58 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifei 58 (68)
.++++.+|++||..+..+
T Consensus 7 ~ii~~~vf~~s~~~l~~~ 24 (232)
T TIGR03064 7 TLLFLIVFFYSLYKLGQI 24 (232)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356667788888877654
No 70
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=23.73 E-value=1.9e+02 Score=18.54 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 035282 40 PILLGFFVFVVLGSSLFQIIRT 61 (68)
Q Consensus 40 p~~l~lfiFVV~Gs~ifeiir~ 61 (68)
++++++++++.+|..|+.-...
T Consensus 4 l~il~llLll~l~asl~~wr~~ 25 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMK 25 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888776544
No 71
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=23.52 E-value=1.2e+02 Score=22.62 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=18.9
Q ss_pred CCCchHHHHHHHHHHHHhHHHH
Q 035282 35 DYPIGPILLGFFVFVVLGSSLF 56 (68)
Q Consensus 35 k~pV~p~~l~lfiFVV~Gs~if 56 (68)
+.+++.+.++|++.+++.|..+
T Consensus 240 ~~~~P~FvlgFl~~~~l~s~~~ 261 (305)
T PF03601_consen 240 KVSFPWFVLGFLAASLLNSLGL 261 (305)
T ss_pred ccCcCHHHHHHHHHHHHHHHhh
Confidence 6789999999999999988764
No 72
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.49 E-value=93 Score=22.50 Aligned_cols=21 Identities=10% Similarity=0.010 Sum_probs=12.5
Q ss_pred CCchHHHHHHHHHHHHhHHHH
Q 035282 36 YPIGPILLGFFVFVVLGSSLF 56 (68)
Q Consensus 36 ~pV~p~~l~lfiFVV~Gs~if 56 (68)
+|-..|+++++++++++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (423)
T TIGR01843 1 SRFARLITWLIAGLVVIFFLW 21 (423)
T ss_pred CcchhhHHHHHHHHHHHHHHH
Confidence 345566666666666666554
No 73
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=23.32 E-value=1.2e+02 Score=18.34 Aligned_cols=30 Identities=30% Similarity=0.678 Sum_probs=22.7
Q ss_pred CCCccccCCCCCCchHHHHHHHHHHHHhHH
Q 035282 25 VPESSAKKGSDYPIGPILLGFFVFVVLGSS 54 (68)
Q Consensus 25 v~~~~~kk~~k~pV~p~~l~lfiFVV~Gs~ 54 (68)
++......+..||+.-.++..+.=++||.-
T Consensus 8 i~DpR~~~~~ry~L~~iL~i~~~a~l~G~~ 37 (90)
T PF13808_consen 8 IPDPRSRRGRRYPLADILLIALCAVLCGAD 37 (90)
T ss_pred CCCCcccCCceecHHHHHHHHHHHHHHccc
Confidence 444444445789999999999888889864
No 74
>TIGR01707 gspI general secretion pathway protein I. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=22.98 E-value=1.8e+02 Score=18.14 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQIIRTA 62 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifeiir~~ 62 (68)
.++++.||-++..++++.+...
T Consensus 7 vlvAlaI~ai~~~~~~~~~~~~ 28 (101)
T TIGR01707 7 VLVALAIFAAAALALISSVGGQ 28 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999988877653
No 75
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=22.87 E-value=76 Score=25.08 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhHHHH
Q 035282 42 LLGFFVFVVLGSSLF 56 (68)
Q Consensus 42 ~l~lfiFVV~Gs~if 56 (68)
+|.+++|++||+++-
T Consensus 307 ~~~i~~lL~ig~~~g 321 (387)
T PF12751_consen 307 YLSILLLLVIGFAIG 321 (387)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566777777664
No 76
>PF04088 Peroxin-13_N: Peroxin 13, N-terminal region; InterPro: IPR007223 Peroxin-13 is a component of the peroxisomal translocation machinery with Peroxin-14 and Peroxin-17. Both termini of Peroxin-13 are oriented to the cytosol. It is required for peroxisomal association of peroxin-14 []. The proteins also contain an SH3 domain (IPR001452 from INTERPRO).; GO: 0016560 protein import into peroxisome matrix, docking, 0005777 peroxisome, 0016021 integral to membrane
Probab=22.85 E-value=1.2e+02 Score=20.82 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=15.8
Q ss_pred CCCCchHHHHHHHHHHHHhHH
Q 035282 34 SDYPIGPILLGFFVFVVLGSS 54 (68)
Q Consensus 34 ~k~pV~p~~l~lfiFVV~Gs~ 54 (68)
.+.+.+.|-+.+|+-+|+|.-
T Consensus 130 ~~~~~s~~PlllF~~~v~G~P 150 (158)
T PF04088_consen 130 KRPKPSSKPLLLFLAAVFGLP 150 (158)
T ss_pred CCCCCCcccHHHHHHHHHHHH
Confidence 456777777888888888864
No 77
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=22.47 E-value=81 Score=19.57 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=8.0
Q ss_pred chHHHHHHH---HHHHHhH
Q 035282 38 IGPILLGFF---VFVVLGS 53 (68)
Q Consensus 38 V~p~~l~lf---iFVV~Gs 53 (68)
+|+|.|.++ +.|++|.
T Consensus 4 ~g~~ellIIlvIvlllFG~ 22 (78)
T PRK00720 4 FSIWHWLIVLAVVLLLFGR 22 (78)
T ss_pred CcHHHHHHHHHHHHHHhCc
Confidence 566655443 3445553
No 78
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=22.46 E-value=80 Score=19.30 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=7.3
Q ss_pred chHHHHHHHH---HHHHh
Q 035282 38 IGPILLGFFV---FVVLG 52 (68)
Q Consensus 38 V~p~~l~lfi---FVV~G 52 (68)
+|+|-|.+++ .+|+|
T Consensus 4 ~g~~elliIl~IvlllFG 21 (73)
T PRK02958 4 FSIWHWLIVLVIVVLVFG 21 (73)
T ss_pred ccHHHHHHHHHHHHHHhC
Confidence 5666544443 34455
No 79
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=22.05 E-value=1.4e+02 Score=19.35 Aligned_cols=21 Identities=14% Similarity=-0.043 Sum_probs=12.4
Q ss_pred CCCCchHHHHHHHHHHHHhHH
Q 035282 34 SDYPIGPILLGFFVFVVLGSS 54 (68)
Q Consensus 34 ~k~pV~p~~l~lfiFVV~Gs~ 54 (68)
+|+-.+..||...+++.++..
T Consensus 16 ~~~d~~~~Wl~~i~~~~v~~~ 36 (97)
T PF04834_consen 16 KKSDMPNYWLYAIGIVLVFCS 36 (97)
T ss_pred cCCCCCHHHHHHHHHHHHHHH
Confidence 346666667666666555543
No 80
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.03 E-value=1.4e+02 Score=21.85 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=15.5
Q ss_pred CCCCchHHHHH-HHHHHHHhHHHHHHHHHH
Q 035282 34 SDYPIGPILLG-FFVFVVLGSSLFQIIRTA 62 (68)
Q Consensus 34 ~k~pV~p~~l~-lfiFVV~Gs~ifeiir~~ 62 (68)
...|++|..+. +++.+++|.+++=++.++
T Consensus 324 P~~p~~P~~~~~l~~~~~~gl~l~~~~~l~ 353 (362)
T TIGR01010 324 PDDALEPYRLYNILATFVILLILYGVLSLL 353 (362)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665443 444455555555555543
No 81
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=21.96 E-value=1.5e+02 Score=18.11 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=10.7
Q ss_pred HHhHHHHHHHHHHHh
Q 035282 50 VLGSSLFQIIRTATS 64 (68)
Q Consensus 50 V~Gs~ifeiir~~~~ 64 (68)
|+||++|-++-.+.|
T Consensus 38 vi~gi~~~~lt~ltN 52 (68)
T PF04971_consen 38 VIGGIFFGLLTYLTN 52 (68)
T ss_pred HHHHHHHHHHHHHhH
Confidence 677777777766654
No 82
>CHL00038 psbL photosystem II protein L
Probab=21.84 E-value=98 Score=16.97 Aligned_cols=14 Identities=14% Similarity=0.130 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHHH
Q 035282 38 IGPILLGFFVFVVL 51 (68)
Q Consensus 38 V~p~~l~lfiFVV~ 51 (68)
.|-+|=-++|||++
T Consensus 16 TSLy~GLLlifvl~ 29 (38)
T CHL00038 16 TSLYWGLLLIFVLA 29 (38)
T ss_pred hhHHHHHHHHHHHH
Confidence 46778778888763
No 83
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=21.52 E-value=2.1e+02 Score=19.07 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=20.7
Q ss_pred CchHHHHHHHHHHHHhHHHHHHHHHHHh
Q 035282 37 PIGPILLGFFVFVVLGSSLFQIIRTATS 64 (68)
Q Consensus 37 pV~p~~l~lfiFVV~Gs~ifeiir~~~~ 64 (68)
+++..-..+++..++...++|++.++..
T Consensus 50 ~~~~~e~lll~~si~lvl~vEllNTAIE 77 (123)
T COG0818 50 GVSAIEWLLLILSIFLVLIVELLNTAIE 77 (123)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556677777888889999988653
No 84
>PF14979 TMEM52: Transmembrane 52
Probab=21.38 E-value=80 Score=22.08 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=10.9
Q ss_pred chHHHHHHHHHHHHhHHH
Q 035282 38 IGPILLGFFVFVVLGSSL 55 (68)
Q Consensus 38 V~p~~l~lfiFVV~Gs~i 55 (68)
|.-.+|.+|++++||-..
T Consensus 22 IwLill~~~llLLCG~ta 39 (154)
T PF14979_consen 22 IWLILLIGFLLLLCGLTA 39 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455567777887543
No 85
>PF07254 DUF1434: Protein of unknown function (DUF1434); InterPro: IPR009883 This family consists of several hypothetical bacterial proteins of around 135 residues in length. Members of this family all appear to be Enterobacterial proteins. The function of this family is unknown.
Probab=21.35 E-value=1e+02 Score=20.58 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=12.7
Q ss_pred chHHHHHHHHHHHHhHHH
Q 035282 38 IGPILLGFFVFVVLGSSL 55 (68)
Q Consensus 38 V~p~~l~lfiFVV~Gs~i 55 (68)
-.|.|+.++.+||+...-
T Consensus 38 ~~~~wl~Ll~lvvfe~ir 55 (132)
T PF07254_consen 38 YTPLWLLLLSLVVFECIR 55 (132)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 357788888888776543
No 86
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=21.34 E-value=2.3e+02 Score=17.94 Aligned_cols=28 Identities=4% Similarity=-0.030 Sum_probs=12.1
Q ss_pred CCchH-HHHHHHHHHHHhHHHHHHHHHHH
Q 035282 36 YPIGP-ILLGFFVFVVLGSSLFQIIRTAT 63 (68)
Q Consensus 36 ~pV~p-~~l~lfiFVV~Gs~ifeiir~~~ 63 (68)
.+-|| |+..+++-+.+=|++-=+.-.+.
T Consensus 26 ~~~sp~W~~~~m~glm~~GllWlvvyYl~ 54 (87)
T PRK00159 26 AGPSSVWYVVLMLGLMLIGLAWLVVNYLA 54 (87)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444 44444443333344444444443
No 87
>PF05356 Phage_Coat_B: Phage Coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1QL1_A 2XKM_A 4IFM_A 1QL2_A 1IFM_A 2KLV_A 1IFN_A 2IFN_A 3IFM_A 2KSJ_A ....
Probab=21.24 E-value=2e+02 Score=18.20 Aligned_cols=26 Identities=15% Similarity=0.570 Sum_probs=22.6
Q ss_pred CCchHHHHHHHHHHHHhHHHHHHHHH
Q 035282 36 YPIGPILLGFFVFVVLGSSLFQIIRT 61 (68)
Q Consensus 36 ~pV~p~~l~lfiFVV~Gs~ifeiir~ 61 (68)
..|+-..+|.+.-+.+-|+|+-++|.
T Consensus 57 ~svgg~IVgvl~~laVaGlI~~l~RK 82 (83)
T PF05356_consen 57 KSVGGYIVGVLVILAVAGLIYSLLRK 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 46888899999999999999998885
No 88
>COG5472 Predicted small integral membrane protein [Function unknown]
Probab=21.23 E-value=1.5e+02 Score=20.71 Aligned_cols=21 Identities=43% Similarity=0.781 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQIIRT 61 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifeiir~ 61 (68)
.+|.+|.|-|+||--|-.-.+
T Consensus 113 flLWFF~FmVVggEWFgMWmS 133 (164)
T COG5472 113 FLLWFFVFMVVGGEWFGMWMS 133 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999988776554
No 89
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=21.21 E-value=68 Score=24.04 Aligned_cols=17 Identities=6% Similarity=0.194 Sum_probs=11.4
Q ss_pred CchHHHHHHHHHHHHhH
Q 035282 37 PIGPILLGFFVFVVLGS 53 (68)
Q Consensus 37 pV~p~~l~lfiFVV~Gs 53 (68)
+.-.++|++.+||+++|
T Consensus 24 ~~~~~~la~a~~vl~~g 40 (298)
T TIGR02223 24 VRATVLIAAILILLFIG 40 (298)
T ss_pred chHHHHHHHHHHHHHhh
Confidence 44567777777777766
No 90
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=21.20 E-value=1.3e+02 Score=22.33 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHh
Q 035282 42 LLGFFVFVVLGSSLFQIIRTATS 64 (68)
Q Consensus 42 ~l~lfiFVV~Gs~ifeiir~~~~ 64 (68)
++.++||..+...++.+++...+
T Consensus 67 l~~iLIl~~Ia~~vv~~~r~~~~ 89 (289)
T PF07466_consen 67 LFDILILFGIAFFVVRFFRRRRS 89 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 56677777777888888887654
No 91
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=21.18 E-value=2e+02 Score=19.07 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 035282 42 LLGFFVFVVLGSSLFQIIRTAT 63 (68)
Q Consensus 42 ~l~lfiFVV~Gs~ifeiir~~~ 63 (68)
.-+.++|+.+++++|=++|...
T Consensus 78 ~~~~~~~i~~s~~~~~~~r~~~ 99 (136)
T cd00922 78 FGGVLAFIGITGVIFGLQRAFV 99 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445788888899998888765
No 92
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=21.07 E-value=1.2e+02 Score=19.05 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhHHHH
Q 035282 40 PILLGFFVFVVLGSSLF 56 (68)
Q Consensus 40 p~~l~lfiFVV~Gs~if 56 (68)
+|.+++.+-+|+|++.+
T Consensus 62 ~~f~~~~~~~v~~~~~~ 78 (105)
T PF10183_consen 62 PFFFGFSGSLVFGGVFL 78 (105)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555556666666554
No 93
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=20.91 E-value=2e+02 Score=18.08 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhHHHH
Q 035282 40 PILLGFFVFVVLGSSLF 56 (68)
Q Consensus 40 p~~l~lfiFVV~Gs~if 56 (68)
.|..+.++|||+|.+.+
T Consensus 3 ~~~~~~l~~lvl~L~~~ 19 (110)
T PF10828_consen 3 KYIYIALAVLVLGLGGW 19 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554443
No 94
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=20.78 E-value=1.8e+02 Score=20.87 Aligned_cols=22 Identities=9% Similarity=-0.048 Sum_probs=11.3
Q ss_pred CCCCchHHHHHHHHHHHHhHHH
Q 035282 34 SDYPIGPILLGFFVFVVLGSSL 55 (68)
Q Consensus 34 ~k~pV~p~~l~lfiFVV~Gs~i 55 (68)
.++...-|...|||+++++-++
T Consensus 195 ~~~~~~g~f~wl~i~~~l~~~~ 216 (268)
T PF09451_consen 195 DSSGGWGFFTWLFIILFLFLAA 216 (268)
T ss_pred CccccccHHHHHHHHHHHHHHH
Confidence 3455555544555555555443
No 95
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.63 E-value=67 Score=23.57 Aligned_cols=17 Identities=41% Similarity=0.968 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHhHH
Q 035282 38 IGPILLGFFVFVVLGSS 54 (68)
Q Consensus 38 V~p~~l~lfiFVV~Gs~ 54 (68)
-+||++|+-+-||+|-+
T Consensus 26 fgp~v~giailvVlGta 42 (221)
T COG4649 26 FGPAVIGIAILVVLGTA 42 (221)
T ss_pred cccHHHHHHHHHHhccc
Confidence 37999999999999865
No 96
>PF11003 DUF2842: Protein of unknown function (DUF2842); InterPro: IPR021265 This bacterial family of proteins have no known function.
Probab=20.46 E-value=95 Score=18.20 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHhHH
Q 035282 39 GPILLGFFVFVVLGSS 54 (68)
Q Consensus 39 ~p~~l~lfiFVV~Gs~ 54 (68)
.|+|+=+..|++.|=+
T Consensus 31 ~~~~~~l~~Yvv~G~~ 46 (62)
T PF11003_consen 31 WPWWVQLIYYVVLGLL 46 (62)
T ss_pred chHHHHHHHHHHHHHH
Confidence 5789999999988843
No 97
>PHA02692 hypothetical protein; Provisional
Probab=20.43 E-value=1.5e+02 Score=18.16 Aligned_cols=13 Identities=15% Similarity=0.186 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHH
Q 035282 39 GPILLGFFVFVVL 51 (68)
Q Consensus 39 ~p~~l~lfiFVV~ 51 (68)
.+|+..+++|++.
T Consensus 43 ~~~~~~ii~~~~~ 55 (70)
T PHA02692 43 VPWTTVFLIGLIA 55 (70)
T ss_pred cchHHHHHHHHHH
Confidence 4566666654443
No 98
>PF02433 FixO: Cytochrome C oxidase, mono-heme subunit/FixO; InterPro: IPR003468 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO) []. Cytochrome cbb3 oxidases are required both to support symbiotic nitrogen fixation, whilst ensuring that the oxygen-labile nitrogenase is not compromised. Cytochrome cbb3 oxidases consist of four subunits: FixN (or CcoN), FixO (or CcoO), FixP (or CcoP) and FixQ (or CcoQ). The catalytic core is comprised of subunits FixN, FixO and FixP, where FixN acts as the catalytic subunit, and Fix O and FixP are membrane-bound mono- and di-haem cytochromes c, respectively. The FixQ subunit protects the core complex in the presence of oxygen from proteolytic degradation []. This entry represents the mono-haem FixO subunit.
Probab=20.39 E-value=1.4e+02 Score=21.94 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 035282 42 LLGFFVFVVLGSSLFQIIRTA 62 (68)
Q Consensus 42 ~l~lfiFVV~Gs~ifeiir~~ 62 (68)
.++.+++|.+||+ .||+=.+
T Consensus 12 ~v~~~i~v~~ggl-v~I~P~~ 31 (226)
T PF02433_consen 12 IVLTLIAVSIGGL-VEIVPLF 31 (226)
T ss_pred HHHHHHHHHHHHH-HHHHHHH
Confidence 3444455555555 5777554
No 99
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=20.20 E-value=2e+02 Score=21.70 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=9.0
Q ss_pred chHHHHHHHHHHHHhHHHH
Q 035282 38 IGPILLGFFVFVVLGSSLF 56 (68)
Q Consensus 38 V~p~~l~lfiFVV~Gs~if 56 (68)
.+..++++++-+.+|.+.+
T Consensus 30 ~~l~~lalll~~alg~~~~ 48 (372)
T PF04375_consen 30 SGLALLALLLALALGAGGW 48 (372)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3334444444455565554
No 100
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=20.13 E-value=1.9e+02 Score=17.07 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=13.1
Q ss_pred HHHHHHHhHHHHHHHHHHHh
Q 035282 45 FFVFVVLGSSLFQIIRTATS 64 (68)
Q Consensus 45 lfiFVV~Gs~ifeiir~~~~ 64 (68)
+++=+-+|++++.++|.+..
T Consensus 11 ~~vg~a~~~a~~~~~r~l~~ 30 (73)
T PF06522_consen 11 VIVGVAVGGATFYLYRLLLT 30 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444566778899997744
No 101
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=20.03 E-value=88 Score=18.02 Aligned_cols=11 Identities=36% Similarity=0.776 Sum_probs=5.4
Q ss_pred HHHHHhHHHHH
Q 035282 47 VFVVLGSSLFQ 57 (68)
Q Consensus 47 iFVV~Gs~ife 57 (68)
+||+.|+.+|=
T Consensus 6 ~~iilg~~ll~ 16 (49)
T PF05624_consen 6 VLIILGALLLL 16 (49)
T ss_pred eHHHHHHHHHH
Confidence 44555555443
No 102
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=20.02 E-value=1.2e+02 Score=20.90 Aligned_cols=22 Identities=18% Similarity=0.307 Sum_probs=9.9
Q ss_pred CCchHHHHHHHHHHHHhHHHHH
Q 035282 36 YPIGPILLGFFVFVVLGSSLFQ 57 (68)
Q Consensus 36 ~pV~p~~l~lfiFVV~Gs~ife 57 (68)
..|+||...+--++.+|.+++-
T Consensus 92 ~dvP~~~~~~~S~~~Fg~gllG 113 (153)
T PF11947_consen 92 VDVPPWAVLLVSLVFFGLGLLG 113 (153)
T ss_pred cccCchHHHHHHHHHHHHHHHh
Confidence 3344444444444444444443
No 103
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=20.02 E-value=1.1e+02 Score=25.84 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=20.9
Q ss_pred hhhcCCCCCcc---ccCCCCCCchHHHHHHHHHHHHh
Q 035282 19 VTRRGSVPESS---AKKGSDYPIGPILLGFFVFVVLG 52 (68)
Q Consensus 19 i~krGkv~~~~---~kk~~k~pV~p~~l~lfiFVV~G 52 (68)
+.++++++... .|++.+.--..++++|.+|.+.|
T Consensus 338 En~~~kvpsp~~~~qKk~Rkvvaimv~maFi~f~~~~ 374 (655)
T KOG4343|consen 338 ENQRLKVPSPKGRNQKKKRKVVAIMVVMAFIIFNYGS 374 (655)
T ss_pred cCcccccCCCcccccccchhhhhHHHHHHHHHHhccC
Confidence 45888887764 23345565566666666666554
Done!