Query 035282
Match_columns 68
No_of_seqs 108 out of 162
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 17:33:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035282.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035282hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cola_ f.1.1.1 (A:) Colicin A 33.2 14 0.001 24.0 2.7 19 37-55 164-183 (197)
2 d1v54d_ f.23.1.1 (D:) Mitochon 27.0 35 0.0026 20.8 3.7 24 41-64 78-101 (144)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 19.0 42 0.0031 18.6 2.6 16 42-57 40-55 (107)
4 d1vf5c3 f.23.23.1 (C:250-286) 18.7 55 0.004 15.8 2.8 10 41-50 8-17 (37)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 18.2 9.5 0.00069 21.1 -0.5 16 42-57 23-38 (91)
6 d1h41a2 d.92.2.2 (A:5-151) alp 17.2 37 0.0027 19.7 2.2 14 54-67 123-136 (147)
7 d1o5za1 c.59.1.2 (A:294-430) F 16.7 12 0.00088 20.9 -0.3 17 49-65 111-129 (137)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 15.7 74 0.0054 17.2 3.2 19 41-59 33-51 (100)
9 d1geqa_ c.1.2.4 (A:) Trp synth 14.3 13 0.00094 24.2 -0.7 12 49-60 217-228 (248)
10 d1rc2a_ f.19.1.1 (A:) Aquapori 13.6 49 0.0036 20.1 2.1 12 44-55 13-24 (231)
No 1
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=33.21 E-value=14 Score=23.96 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=9.4
Q ss_pred CchHH-HHHHHHHHHHhHHH
Q 035282 37 PIGPI-LLGFFVFVVLGSSL 55 (68)
Q Consensus 37 pV~p~-~l~lfiFVV~Gs~i 55 (68)
|++|+ .+|+++..++|+.|
T Consensus 164 ~~~~iGI~g~li~~~v~alI 183 (197)
T d1cola_ 164 PAIAVGIAGILLAAVVGALI 183 (197)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 44444 44455555555544
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.05 E-value=35 Score=20.77 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHh
Q 035282 41 ILLGFFVFVVLGSSLFQIIRTATS 64 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifeiir~~~~ 64 (68)
++.+.|+|+.+|.++|-++|..-.
T Consensus 78 v~g~~~~~i~~s~~i~~~~r~~v~ 101 (144)
T d1v54d_ 78 VVGAAMFFIGFTALLLIWEKHYVY 101 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345577889999999998887543
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=18.95 E-value=42 Score=18.65 Aligned_cols=16 Identities=13% Similarity=-0.041 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhHHHHH
Q 035282 42 LLGFFVFVVLGSSLFQ 57 (68)
Q Consensus 42 ~l~lfiFVV~Gs~ife 57 (68)
|+..++|+++.++++=
T Consensus 40 ~i~~~I~~~V~~~~~~ 55 (107)
T d3ehbb2 40 YIITAVTIFVCLLLLI 55 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555566666555544
No 4
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.74 E-value=55 Score=15.81 Aligned_cols=10 Identities=20% Similarity=0.644 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 035282 41 ILLGFFVFVV 50 (68)
Q Consensus 41 ~~l~lfiFVV 50 (68)
|+++||+.|+
T Consensus 8 gl~~F~~~v~ 17 (37)
T d1vf5c3 8 WMIAFICLVM 17 (37)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=18.19 E-value=9.5 Score=21.08 Aligned_cols=16 Identities=13% Similarity=-0.151 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhHHHHH
Q 035282 42 LLGFFVFVVLGSSLFQ 57 (68)
Q Consensus 42 ~l~lfiFVV~Gs~ife 57 (68)
|+.+++||++.++++-
T Consensus 23 ~i~~iv~v~V~~~~~~ 38 (91)
T d1fftb2 23 GLMLIVVIPAILMAVG 38 (91)
T ss_dssp HHTTTTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555555556665554
No 6
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=17.17 E-value=37 Score=19.73 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCC
Q 035282 54 SLFQIIRTATSRGM 67 (68)
Q Consensus 54 ~ifeiir~~~~~~~ 67 (68)
++|++||.++.+.+
T Consensus 123 G~f~lLr~l~~~~~ 136 (147)
T d1h41a2 123 GSFHLLRLIQTQHA 136 (147)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 57888888887664
No 7
>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=16.67 E-value=12 Score=20.87 Aligned_cols=17 Identities=29% Similarity=0.299 Sum_probs=11.3
Q ss_pred HHHhHHHH--HHHHHHHhc
Q 035282 49 VVLGSSLF--QIIRTATSR 65 (68)
Q Consensus 49 VV~Gs~if--eiir~~~~~ 65 (68)
|||||.-+ |+++.+..+
T Consensus 111 lv~GSlylvgev~~~l~~~ 129 (137)
T d1o5za1 111 VVTGSLFLVGYVREFLTTG 129 (137)
T ss_dssp EEESCHHHHHHHHHHHHHS
T ss_pred EEECCHHHHHHHHHHHHhc
Confidence 56777665 777776554
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=15.70 E-value=74 Score=17.17 Aligned_cols=19 Identities=0% Similarity=0.077 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 035282 41 ILLGFFVFVVLGSSLFQII 59 (68)
Q Consensus 41 ~~l~lfiFVV~Gs~ifeii 59 (68)
.|+..++|+++.+.++=.+
T Consensus 33 ~~i~~~I~~~V~~~l~~~~ 51 (100)
T d3dtub2 33 LVIIAAITIFVTLLILYAV 51 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3555666666666655443
No 9
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=14.26 E-value=13 Score=24.21 Aligned_cols=12 Identities=58% Similarity=0.863 Sum_probs=10.2
Q ss_pred HHHhHHHHHHHH
Q 035282 49 VVLGSSLFQIIR 60 (68)
Q Consensus 49 VV~Gs~ifeiir 60 (68)
|||||++.+++.
T Consensus 217 vIVGSaiv~~i~ 228 (248)
T d1geqa_ 217 VVVGSALVKIIG 228 (248)
T ss_dssp EEECHHHHHHHH
T ss_pred EEECHHHHHHHH
Confidence 689999999884
No 10
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=13.63 E-value=49 Score=20.07 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=8.7
Q ss_pred HHHHHHHHhHHH
Q 035282 44 GFFVFVVLGSSL 55 (68)
Q Consensus 44 ~lfiFVV~Gs~i 55 (68)
.+|+|+.||+.+
T Consensus 13 ~llvf~g~gs~~ 24 (231)
T d1rc2a_ 13 FWLVFGGCGSAV 24 (231)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 367788888765
Done!