BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035287
         (68 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8N1G0|ZN687_HUMAN Zinc finger protein 687 OS=Homo sapiens GN=ZNF687 PE=1 SV=1
          Length = 1237

 Score = 32.7 bits (73), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 14  IRRNGADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICS 60
           + +N     CP CGG  L  +F  HLR   L +S +V   + C  CS
Sbjct: 726 MHKNRPPHVCPECGGNFLQANFQTHLREACLHVSRRV--GYRCPSCS 770


>sp|P50771|VE2_HPV28 Regulatory protein E2 OS=Human papillomavirus type 28 GN=E2 PE=3
           SV=1
          Length = 376

 Score = 32.7 bits (73), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 8/56 (14%)

Query: 13  VIRRNGADAACPYCGG--------PVLAIDFDAHLRFCFLPISHKVKKKFYCTICS 60
           V R +  D  CPY  G        PV+ +  D +   CF    HK K+K YC   S
Sbjct: 272 VTRTSDCDTTCPYTVGHPSDPDCAPVVHLKGDPNCLKCFRYRLHKGKRKLYCKTSS 327


>sp|Q9D2D7|ZN687_MOUSE Zinc finger protein 687 OS=Mus musculus GN=Znf687 PE=2 SV=1
          Length = 1237

 Score = 32.3 bits (72), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 16  RNGADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICS 60
           +N A   CP CGG  L  +F  HLR   L  S +V   + C  C+
Sbjct: 728 KNRAPHVCPECGGNFLQANFQTHLREACLHFSRRV--GYRCPSCA 770


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.333    0.144    0.471 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,633,580
Number of Sequences: 539616
Number of extensions: 881836
Number of successful extensions: 2945
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2941
Number of HSP's gapped (non-prelim): 8
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)