Query 035287
Match_columns 68
No_of_seqs 49 out of 51
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k4x_A 30S ribosomal protein S 93.4 0.037 1.3E-06 31.8 1.8 38 7-63 9-46 (55)
2 3j20_Y 30S ribosomal protein S 92.2 0.11 3.7E-06 29.3 2.6 37 7-62 10-46 (50)
3 2fiy_A Protein FDHE homolog; F 91.2 0.083 2.8E-06 38.9 1.7 44 18-61 180-230 (309)
4 3o9x_A Uncharacterized HTH-typ 89.2 0.79 2.7E-05 27.8 4.8 43 22-64 4-47 (133)
5 3u5c_f 40S ribosomal protein S 88.3 0.48 1.6E-05 31.3 3.6 41 6-64 107-149 (152)
6 3ga8_A HTH-type transcriptiona 87.5 1.2 3.9E-05 26.0 4.5 41 22-64 4-47 (78)
7 2js4_A UPF0434 protein BB2007; 83.5 0.83 2.8E-05 27.2 2.5 29 21-64 9-37 (70)
8 2jr6_A UPF0434 protein NMA0874 83.2 0.89 3.1E-05 26.9 2.6 29 21-64 9-37 (68)
9 2hf1_A Tetraacyldisaccharide-1 82.1 1.1 3.7E-05 26.6 2.7 28 22-64 10-37 (68)
10 1k3x_A Endonuclease VIII; hydr 80.7 0.98 3.3E-05 31.8 2.5 26 22-60 236-261 (262)
11 2xzf_A Formamidopyrimidine-DNA 80.3 1.1 3.8E-05 31.7 2.7 27 22-61 244-270 (271)
12 1vd4_A Transcription initiatio 80.0 0.35 1.2E-05 25.8 -0.0 41 18-66 12-52 (62)
13 3u6p_A Formamidopyrimidine-DNA 79.9 1.2 3.9E-05 31.8 2.7 27 21-60 246-272 (273)
14 2lcq_A Putative toxin VAPC6; P 79.7 1.3 4.6E-05 28.5 2.7 30 5-34 133-162 (165)
15 1k82_A Formamidopyrimidine-DNA 79.1 1.2 4.1E-05 31.6 2.5 26 22-60 242-267 (268)
16 2pk7_A Uncharacterized protein 78.6 1.3 4.6E-05 26.2 2.3 29 21-64 9-37 (69)
17 1ee8_A MUTM (FPG) protein; bet 78.3 1.3 4.3E-05 31.5 2.4 28 21-61 236-263 (266)
18 2jny_A Uncharacterized BCR; st 77.0 2 6.9E-05 25.4 2.7 29 21-64 11-39 (67)
19 2kvh_A Zinc finger and BTB dom 74.9 1.1 3.6E-05 19.2 0.9 13 52-64 2-14 (27)
20 1pft_A TFIIB, PFTFIIBN; N-term 74.8 2.2 7.4E-05 22.8 2.3 29 21-63 6-34 (50)
21 1qyp_A RNA polymerase II; tran 73.6 3.4 0.00012 22.7 3.0 41 20-65 15-55 (57)
22 2kdx_A HYPA, hydrogenase/ureas 72.7 2.6 8.8E-05 26.2 2.5 13 17-29 86-99 (119)
23 2kpi_A Uncharacterized protein 72.2 3.5 0.00012 23.3 2.9 27 21-64 11-39 (56)
24 3w0f_A Endonuclease 8-like 3; 72.1 1.5 5.1E-05 32.1 1.5 29 22-61 253-281 (287)
25 1rik_A E6APC1 peptide; E6-bind 71.6 1.4 4.9E-05 18.7 0.9 13 52-64 1-13 (29)
26 2d8y_A Eplin protein; LIM doma 70.4 0.79 2.7E-05 26.6 -0.2 42 18-65 13-54 (91)
27 2lvu_A Zinc finger and BTB dom 72.7 0.93 3.2E-05 19.2 0.0 13 52-64 1-13 (26)
28 2m0d_A Zinc finger and BTB dom 69.3 1.6 5.4E-05 18.5 0.8 13 52-64 2-14 (30)
29 2m0f_A Zinc finger and BTB dom 68.4 1.7 5.9E-05 18.3 0.8 13 52-64 1-13 (29)
30 2xzm_9 RPS31E; ribosome, trans 68.3 5.2 0.00018 27.6 3.5 41 5-63 101-141 (189)
31 1srk_A Zinc finger protein ZFP 67.9 1.8 6.3E-05 19.4 0.9 15 51-65 5-19 (35)
32 2kvf_A Zinc finger and BTB dom 67.7 1.9 6.3E-05 18.4 0.8 13 52-64 2-14 (28)
33 3f6q_B LIM and senescent cell 66.7 1.1 3.8E-05 24.1 -0.1 42 17-65 8-51 (72)
34 1a7i_A QCRP2 (LIM1); LIM domai 64.9 1.6 5.6E-05 24.5 0.4 42 18-65 5-46 (81)
35 3pwf_A Rubrerythrin; non heme 64.7 5.9 0.0002 26.4 3.2 12 18-29 151-162 (170)
36 2kvg_A Zinc finger and BTB dom 64.6 2.2 7.6E-05 18.3 0.7 13 52-64 2-14 (27)
37 2elx_A Zinc finger protein 406 64.2 2.3 7.8E-05 18.9 0.7 14 51-64 5-18 (35)
38 2elm_A Zinc finger protein 406 64.1 3.4 0.00012 19.1 1.4 15 51-65 7-21 (37)
39 3a43_A HYPD, hydrogenase nicke 63.5 5.1 0.00017 25.9 2.6 10 20-29 107-116 (139)
40 2d9k_A FLN29 gene product; zin 61.5 0.46 1.6E-05 26.8 -2.4 40 17-63 14-53 (75)
41 2elq_A Zinc finger protein 406 60.5 3 0.0001 18.9 0.8 14 51-64 7-20 (36)
42 2lvt_A Zinc finger and BTB dom 64.4 1.9 6.3E-05 18.5 0.0 13 52-64 1-13 (29)
43 2lvr_A Zinc finger and BTB dom 63.9 1.9 6.6E-05 18.3 0.0 13 52-64 2-14 (30)
44 1ard_A Yeast transcription fac 58.8 1.5 5.1E-05 18.6 -0.5 11 53-63 2-12 (29)
45 2elp_A Zinc finger protein 406 57.8 3.7 0.00013 18.6 0.9 14 51-64 7-20 (37)
46 2elv_A Zinc finger protein 406 57.8 3.7 0.00013 18.5 0.9 14 51-64 7-20 (36)
47 2elt_A Zinc finger protein 406 56.0 4.3 0.00015 18.1 0.9 15 50-64 6-20 (36)
48 1nui_A DNA primase/helicase; z 55.2 3.8 0.00013 27.7 0.9 34 15-62 9-42 (255)
49 2epc_A Zinc finger protein 32; 55.0 4.2 0.00014 18.9 0.8 14 51-64 9-22 (42)
50 2cu8_A Cysteine-rich protein 2 54.6 2.4 8.1E-05 23.6 -0.2 41 18-64 7-47 (76)
51 2m0e_A Zinc finger and BTB dom 54.6 2.1 7.1E-05 17.9 -0.3 12 53-64 2-13 (29)
52 1njq_A Superman protein; zinc- 54.6 3.8 0.00013 19.0 0.6 14 51-64 4-17 (39)
53 1vq8_Z 50S ribosomal protein L 54.5 7.9 0.00027 23.6 2.2 34 15-63 22-55 (83)
54 3h0g_I DNA-directed RNA polyme 53.7 5.7 0.0002 24.8 1.5 31 21-62 5-35 (113)
55 2el5_A Zinc finger protein 268 53.2 4.6 0.00016 18.9 0.8 14 51-64 8-21 (42)
56 2els_A Zinc finger protein 406 53.2 4.8 0.00017 18.1 0.9 15 50-64 6-20 (36)
57 1lko_A Rubrerythrin all-iron(I 52.9 12 0.0004 25.0 3.1 12 18-29 169-180 (191)
58 1l8d_A DNA double-strand break 52.5 5 0.00017 24.1 1.0 12 20-31 47-58 (112)
59 1klr_A Zinc finger Y-chromosom 52.3 2.2 7.6E-05 18.0 -0.4 12 53-64 2-13 (30)
60 2yu5_A Zinc finger protein 473 52.3 4.7 0.00016 19.1 0.7 14 51-64 10-23 (44)
61 2emb_A Zinc finger protein 473 51.7 4.8 0.00016 19.1 0.7 14 51-64 10-23 (44)
62 2epv_A Zinc finger protein 268 51.5 5.2 0.00018 19.1 0.8 15 50-64 9-23 (44)
63 2qkd_A Zinc finger protein ZPR 51.5 8.5 0.00029 29.4 2.4 38 19-63 11-51 (404)
64 1twf_L ABC10-alpha, DNA-direct 51.3 12 0.00042 22.1 2.6 11 19-29 27-37 (70)
65 1g47_A Pinch protein; LIM doma 50.7 6.7 0.00023 21.5 1.3 47 14-65 5-51 (77)
66 3iuf_A Zinc finger protein UBI 50.3 5.5 0.00019 19.8 0.9 14 51-64 5-18 (48)
67 2elo_A Zinc finger protein 406 50.0 3.8 0.00013 18.5 0.2 14 51-64 7-20 (37)
68 2emi_A Zinc finger protein 484 50.0 5.7 0.00019 18.9 0.9 14 51-64 10-23 (46)
69 2ytf_A Zinc finger protein 268 50.0 5.5 0.00019 18.9 0.8 14 51-64 10-23 (46)
70 2a20_A Regulating synaptic mem 49.7 2 6.9E-05 25.8 -1.1 25 22-61 35-59 (62)
71 2enc_A Zinc finger protein 224 49.7 5.4 0.00019 19.0 0.7 15 50-64 9-23 (46)
72 2em7_A Zinc finger protein 224 49.7 5.7 0.0002 18.9 0.8 15 50-64 9-23 (46)
73 2yts_A Zinc finger protein 484 49.6 5.6 0.00019 18.9 0.8 15 50-64 9-23 (46)
74 1wii_A Hypothetical UPF0222 pr 49.4 16 0.00056 22.3 3.1 37 18-64 21-58 (85)
75 2eof_A Zinc finger protein 268 49.3 5.5 0.00019 18.7 0.7 14 51-64 10-23 (44)
76 2eoz_A Zinc finger protein 473 49.3 5.6 0.00019 19.0 0.8 15 50-64 9-23 (46)
77 2eow_A Zinc finger protein 347 49.3 5.6 0.00019 18.9 0.7 14 51-64 10-23 (46)
78 2epw_A Zinc finger protein 268 49.0 5.8 0.0002 18.8 0.8 15 50-64 9-23 (46)
79 2ytp_A Zinc finger protein 484 48.9 6 0.00021 18.9 0.9 14 51-64 10-23 (46)
80 2eoy_A Zinc finger protein 473 48.7 6 0.0002 18.9 0.8 15 50-64 9-23 (46)
81 2eml_A Zinc finger protein 28 48.5 5.9 0.0002 18.9 0.8 14 51-64 10-23 (46)
82 2en2_A B-cell lymphoma 6 prote 48.5 5.5 0.00019 18.6 0.6 14 51-64 9-22 (42)
83 2yto_A Zinc finger protein 484 48.5 6.2 0.00021 18.9 0.9 15 50-64 9-23 (46)
84 2ytj_A Zinc finger protein 484 48.4 5.9 0.0002 18.9 0.7 14 51-64 10-23 (46)
85 2eoo_A ZFP-95, zinc finger pro 48.3 6.1 0.00021 18.9 0.8 14 51-64 10-23 (46)
86 2eor_A Zinc finger protein 224 48.3 5.6 0.00019 18.9 0.7 14 51-64 10-23 (46)
87 2eme_A Zinc finger protein 473 48.2 5.9 0.0002 18.8 0.7 14 51-64 10-23 (46)
88 2epu_A Zinc finger protein 32; 48.0 6.1 0.00021 18.8 0.8 15 50-64 9-23 (45)
89 2ene_A Zinc finger protein 347 47.9 6.1 0.00021 18.8 0.8 15 50-64 9-23 (46)
90 2l8e_A Polyhomeotic-like prote 47.9 2.5 8.5E-05 23.8 -0.8 22 21-42 19-40 (49)
91 2eq0_A Zinc finger protein 347 47.8 6 0.00021 18.9 0.7 14 51-64 10-23 (46)
92 2em4_A Zinc finger protein 28 47.8 6.7 0.00023 18.7 0.9 14 51-64 10-23 (46)
93 1iml_A CRIP, cysteine rich int 47.8 2.9 0.0001 23.1 -0.5 12 53-64 27-38 (76)
94 2elr_A Zinc finger protein 406 47.8 2.8 9.7E-05 18.8 -0.5 14 51-64 7-20 (36)
95 2em8_A Zinc finger protein 224 47.6 6.3 0.00021 18.9 0.8 15 50-64 9-23 (46)
96 2eox_A Zinc finger protein 473 47.5 6.4 0.00022 18.6 0.8 14 51-64 10-23 (44)
97 2emj_A Zinc finger protein 28 47.5 6.1 0.00021 18.9 0.7 14 51-64 10-23 (46)
98 2emy_A Zinc finger protein 268 47.4 6.4 0.00022 18.7 0.8 14 51-64 10-23 (46)
99 2ep3_A Zinc finger protein 484 47.4 6.4 0.00022 18.8 0.8 14 51-64 10-23 (46)
100 2emx_A Zinc finger protein 268 47.3 6.5 0.00022 18.5 0.8 14 51-64 8-21 (44)
101 3cng_A Nudix hydrolase; struct 47.3 12 0.00041 23.6 2.3 13 22-34 5-17 (189)
102 1paa_A Yeast transcription fac 47.3 2.5 8.7E-05 18.0 -0.7 11 53-63 2-12 (30)
103 2ysp_A Zinc finger protein 224 47.2 6.6 0.00023 18.7 0.8 15 50-64 9-23 (46)
104 2em2_A Zinc finger protein 28 47.0 6.5 0.00022 18.8 0.8 15 50-64 9-23 (46)
105 2emp_A Zinc finger protein 347 46.7 6.8 0.00023 18.6 0.8 14 51-64 10-23 (46)
106 2yrj_A Zinc finger protein 473 46.7 6.9 0.00024 18.5 0.9 14 51-64 10-23 (46)
107 2em5_A ZFP-95, zinc finger pro 46.5 6.5 0.00022 18.8 0.7 14 51-64 10-23 (46)
108 4ayb_P DNA-directed RNA polyme 46.4 6 0.00021 22.6 0.7 12 20-31 22-34 (48)
109 2emm_A ZFP-95, zinc finger pro 46.4 6.7 0.00023 18.6 0.8 14 51-64 10-23 (46)
110 2el4_A Zinc finger protein 268 46.4 6.6 0.00022 18.6 0.7 14 51-64 10-23 (46)
111 2en3_A ZFP-95, zinc finger pro 46.3 6.7 0.00023 18.7 0.8 14 51-64 10-23 (46)
112 2emh_A Zinc finger protein 484 46.3 6.2 0.00021 18.8 0.6 14 51-64 10-23 (46)
113 2ep2_A Zinc finger protein 484 46.2 6.8 0.00023 18.7 0.8 14 51-64 10-23 (46)
114 2ytg_A ZFP-95, zinc finger pro 46.2 6.4 0.00022 18.8 0.7 15 50-64 9-23 (46)
115 4rxn_A Rubredoxin; electron tr 46.1 8.4 0.00029 21.9 1.3 9 22-30 38-46 (54)
116 2el6_A Zinc finger protein 268 46.1 6.6 0.00023 18.8 0.7 14 51-64 10-23 (46)
117 2cor_A Pinch protein; LIM doma 46.1 3.6 0.00012 23.3 -0.3 42 14-64 9-52 (79)
118 2ept_A Zinc finger protein 32; 46.0 7.8 0.00027 18.0 1.0 14 51-64 8-21 (41)
119 2drp_A Protein (tramtrack DNA- 45.9 10 0.00035 19.3 1.5 13 51-63 8-20 (66)
120 2ema_A Zinc finger protein 347 45.8 7.2 0.00025 18.6 0.9 14 51-64 10-23 (46)
121 2em9_A Zinc finger protein 224 45.7 6.8 0.00023 18.6 0.7 14 51-64 10-23 (46)
122 1dl6_A Transcription factor II 45.5 6.9 0.00023 22.0 0.8 30 21-64 12-41 (58)
123 2emf_A Zinc finger protein 484 45.4 7.5 0.00026 18.6 0.9 14 51-64 10-23 (46)
124 2yu8_A Zinc finger protein 347 45.3 6.9 0.00024 18.6 0.7 15 50-64 9-23 (46)
125 2en6_A Zinc finger protein 268 45.1 7.5 0.00026 18.5 0.8 15 50-64 9-23 (46)
126 2em3_A Zinc finger protein 28 45.1 7.3 0.00025 18.5 0.8 14 51-64 10-23 (46)
127 2iyb_E Testin, TESS, TES; LIM 44.7 2.5 8.5E-05 23.0 -1.1 40 21-64 3-43 (65)
128 1rim_A E6APC2 peptide; E6-bind 44.4 3.8 0.00013 18.6 -0.3 13 52-64 1-13 (33)
129 1vk6_A NADH pyrophosphatase; 1 44.4 14 0.00048 25.8 2.4 14 20-33 107-120 (269)
130 2ytd_A Zinc finger protein 473 44.3 7.6 0.00026 18.5 0.8 14 51-64 10-23 (46)
131 2co8_A NEDD9 interacting prote 44.1 2.4 8.3E-05 24.2 -1.3 40 18-65 13-54 (82)
132 1x63_A Skeletal muscle LIM-pro 43.9 5.3 0.00018 22.2 0.2 38 20-64 15-54 (82)
133 2eoj_A Zinc finger protein 268 43.9 4.7 0.00016 19.0 -0.0 14 51-64 10-23 (44)
134 2yso_A ZFP-95, zinc finger pro 43.8 7.4 0.00025 18.5 0.7 14 51-64 10-23 (46)
135 2ab3_A ZNF29; zinc finger prot 43.8 9.1 0.00031 15.8 1.0 13 52-64 1-15 (29)
136 2epr_A POZ-, at HOOK-, and zin 43.6 8.1 0.00028 18.8 0.8 16 49-64 8-23 (48)
137 2en1_A Zinc finger protein 224 43.5 7.7 0.00026 18.4 0.7 14 51-64 10-23 (46)
138 1p7a_A BF3, BKLF, kruppel-like 43.4 3.7 0.00013 18.6 -0.5 14 51-64 9-22 (37)
139 2jvm_A Uncharacterized protein 43.2 5.7 0.00019 24.6 0.2 14 18-31 51-64 (80)
140 2en8_A Zinc finger protein 224 43.2 7.5 0.00026 18.4 0.7 15 50-64 9-23 (46)
141 1zfo_A LAsp-1; LIM domain, zin 43.1 4.1 0.00014 20.2 -0.4 15 20-34 3-17 (31)
142 2ytk_A Zinc finger protein 347 42.8 8.1 0.00028 18.4 0.7 14 51-64 10-23 (46)
143 2egq_A FHL1 protein; LIM domai 42.4 8.1 0.00028 21.2 0.8 39 20-64 15-57 (77)
144 1nyp_A Pinch protein; LIM doma 42.2 3.1 0.00011 22.4 -1.0 40 19-65 4-43 (66)
145 3h0g_L DNA-directed RNA polyme 41.9 10 0.00036 22.3 1.3 14 17-30 18-31 (63)
146 1x4k_A Skeletal muscle LIM-pro 41.8 3.9 0.00013 22.2 -0.6 40 20-65 5-45 (72)
147 2xjy_A Rhombotin-2; oncoprotei 41.5 3.1 0.00011 25.1 -1.1 38 21-64 67-105 (131)
148 1znf_A 31ST zinc finger from X 40.9 4.7 0.00016 16.7 -0.3 11 54-64 2-12 (27)
149 2jrr_A Uncharacterized protein 40.6 5.4 0.00019 23.8 -0.1 13 18-30 38-50 (67)
150 2yuc_A TNF receptor-associated 40.4 2.8 9.5E-05 23.4 -1.4 40 17-63 13-54 (76)
151 2eos_A B-cell lymphoma 6 prote 40.4 5 0.00017 18.8 -0.3 14 51-64 9-22 (42)
152 2ep0_A Zinc finger protein 28 40.4 9.2 0.00032 18.1 0.7 14 51-64 10-23 (46)
153 1x62_A C-terminal LIM domain p 39.2 4 0.00014 22.9 -0.9 42 16-64 11-52 (79)
154 2dj7_A Actin-binding LIM prote 39.2 6.3 0.00022 22.4 0.0 40 19-64 14-53 (80)
155 2ctu_A Zinc finger protein 483 39.2 17 0.00057 18.4 1.7 16 50-65 15-30 (73)
156 1yui_A GAGA-factor; complex (D 39.1 9.5 0.00033 19.0 0.7 14 51-64 22-35 (54)
157 1fv5_A First zinc finger of U- 39.0 7.2 0.00025 19.6 0.2 14 51-64 6-19 (36)
158 2yte_A Zinc finger protein 473 38.9 4.6 0.00016 18.7 -0.5 14 51-64 8-21 (42)
159 2d8z_A Four and A half LIM dom 38.8 7.1 0.00024 21.0 0.2 38 20-64 5-42 (70)
160 4ddu_A Reverse gyrase; topoiso 38.8 11 0.00039 31.2 1.5 13 20-32 8-20 (1104)
161 2eod_A TNF receptor-associated 38.5 15 0.00051 19.0 1.5 12 52-63 9-20 (66)
162 2zkr_2 60S ribosomal protein L 38.2 10 0.00036 24.2 0.9 25 18-60 14-38 (97)
163 1gh9_A 8.3 kDa protein (gene M 38.1 12 0.00042 22.2 1.2 19 22-42 6-24 (71)
164 3lpe_B DNA-directed RNA polyme 38.0 9.5 0.00032 22.1 0.6 7 22-28 15-21 (59)
165 2riq_A Poly [ADP-ribose] polym 37.9 11 0.00038 25.5 1.1 14 18-31 76-89 (160)
166 3uk3_C Zinc finger protein 217 37.9 11 0.00038 18.4 0.9 39 20-64 4-43 (57)
167 2kfq_A FP1; protein, de novo p 37.8 3.8 0.00013 18.4 -0.9 11 53-63 2-12 (32)
168 2dkt_A Ring finger and CHY zin 37.7 22 0.00074 23.8 2.5 38 16-60 67-105 (143)
169 2enf_A Zinc finger protein 347 37.7 5.5 0.00019 19.0 -0.4 14 51-64 10-23 (46)
170 2ely_A Zinc finger protein 224 37.6 5.8 0.0002 19.0 -0.3 14 51-64 10-23 (46)
171 2eov_A Zinc finger protein 484 37.6 5.6 0.00019 18.9 -0.4 14 51-64 10-23 (46)
172 2epq_A POZ-, at HOOK-, and zin 36.9 6.5 0.00022 18.7 -0.2 14 51-64 8-21 (45)
173 2apo_B Ribosome biogenesis pro 36.9 8.7 0.0003 22.5 0.3 12 20-31 18-29 (60)
174 2eon_A ZFP-95, zinc finger pro 36.8 5.8 0.0002 19.1 -0.4 14 51-64 10-23 (46)
175 1wyh_A SLIM 2, skeletal muscle 36.5 5.1 0.00018 21.7 -0.7 39 19-64 4-44 (72)
176 2aus_D NOP10, ribosome biogene 36.5 14 0.00048 21.6 1.2 13 20-32 17-29 (60)
177 2ytb_A Zinc finger protein 32; 36.4 5.7 0.0002 18.4 -0.4 14 51-64 9-22 (42)
178 2eq3_A Zinc finger protein 347 36.3 6.5 0.00022 18.7 -0.2 14 51-64 10-23 (46)
179 6rxn_A Rubredoxin; electron tr 36.1 13 0.00046 20.4 1.0 16 14-29 22-39 (46)
180 2emg_A Zinc finger protein 484 35.4 5.9 0.0002 18.9 -0.5 14 51-64 10-23 (46)
181 2yth_A Zinc finger protein 224 35.3 6.4 0.00022 18.8 -0.4 14 51-64 10-23 (46)
182 1x61_A Thyroid receptor intera 35.2 10 0.00034 20.5 0.4 40 20-64 5-44 (72)
183 2en7_A Zinc finger protein 268 35.2 4.7 0.00016 18.9 -0.9 13 51-63 10-22 (44)
184 2x5c_A Hypothetical protein OR 34.7 20 0.00067 23.7 1.8 21 21-41 53-73 (131)
185 2yrm_A B-cell lymphoma 6 prote 34.6 7 0.00024 18.6 -0.3 14 51-64 8-21 (43)
186 2jz8_A Uncharacterized protein 34.5 11 0.00037 23.7 0.6 13 19-31 47-59 (87)
187 2eq1_A Zinc finger protein 347 34.5 5.7 0.0002 18.9 -0.6 13 51-63 10-22 (46)
188 2bl6_A Nucleocapsid protein P1 34.5 6.8 0.00023 19.7 -0.4 25 4-28 3-27 (37)
189 3lcz_A YCZA, inhibitor of trap 34.3 3.8 0.00013 23.0 -1.5 21 13-33 2-22 (53)
190 2elz_A Zinc finger protein 224 34.1 6.8 0.00023 18.7 -0.4 14 51-64 10-23 (46)
191 1wig_A KIAA1808 protein; LIM d 34.1 5.9 0.0002 22.0 -0.7 35 21-64 6-42 (73)
192 2em6_A Zinc finger protein 224 34.1 7.1 0.00024 18.7 -0.3 14 51-64 10-23 (46)
193 2eoe_A Zinc finger protein 347 34.0 7.4 0.00025 18.4 -0.2 14 51-64 10-23 (46)
194 2ct7_A Ring finger protein 31; 33.9 17 0.00057 21.3 1.3 10 23-32 28-37 (86)
195 2ytn_A Zinc finger protein 347 33.8 6.5 0.00022 18.7 -0.5 14 51-64 10-23 (46)
196 2epx_A Zinc finger protein 28 33.7 7.5 0.00026 18.4 -0.3 14 51-64 10-23 (47)
197 2enh_A Zinc finger protein 28 33.7 6.4 0.00022 18.8 -0.5 14 51-64 10-23 (46)
198 1ryq_A DNA-directed RNA polyme 33.7 11 0.00038 22.6 0.5 9 20-28 23-31 (69)
199 1yuz_A Nigerythrin; rubrythrin 33.6 37 0.0013 22.9 3.2 12 18-29 184-195 (202)
200 1bbo_A Human enhancer-binding 33.6 14 0.00048 18.0 0.8 14 51-64 27-40 (57)
201 2emz_A ZFP-95, zinc finger pro 33.5 6.5 0.00022 18.8 -0.5 14 51-64 10-23 (46)
202 2eou_A Zinc finger protein 473 33.5 6.2 0.00021 18.7 -0.6 14 51-64 10-23 (44)
203 4esj_A Type-2 restriction enzy 33.4 20 0.00067 26.5 1.8 34 20-65 34-68 (257)
204 2ct1_A Transcriptional repress 33.4 13 0.00045 19.6 0.7 14 51-64 13-26 (77)
205 2eom_A ZFP-95, zinc finger pro 33.3 6.7 0.00023 18.8 -0.5 14 51-64 10-23 (46)
206 2ytq_A Zinc finger protein 268 33.3 7.4 0.00025 18.6 -0.3 14 51-64 10-23 (46)
207 2eps_A POZ-, at HOOK-, and zin 33.2 16 0.00055 18.2 1.0 14 51-64 10-23 (54)
208 2en9_A Zinc finger protein 28 32.9 7.1 0.00024 18.7 -0.4 14 51-64 10-23 (46)
209 2ep1_A Zinc finger protein 484 32.9 5.8 0.0002 18.8 -0.8 14 51-64 10-23 (46)
210 1f2i_G Fusion of N-terminal 17 32.7 14 0.00048 19.1 0.8 42 17-64 16-60 (73)
211 1x64_A Alpha-actinin-2 associa 32.6 8.2 0.00028 22.0 -0.2 39 19-64 24-62 (89)
212 2qgp_A HNH endonuclease; Q39X4 32.2 26 0.00088 21.5 2.0 13 19-31 34-46 (112)
213 2eop_A Zinc finger protein 268 32.1 7.2 0.00025 18.5 -0.5 13 51-63 10-22 (46)
214 2con_A RUH-035 protein, NIN on 32.1 14 0.00049 22.5 0.8 12 18-29 28-39 (79)
215 4bbr_M Transcription initiatio 32.1 29 0.00098 25.1 2.5 29 22-64 23-53 (345)
216 2eoq_A Zinc finger protein 224 31.7 7.2 0.00025 18.6 -0.5 14 51-64 10-23 (46)
217 1rut_X Flinc4, fusion protein 31.6 5.1 0.00017 26.1 -1.4 37 22-64 71-108 (188)
218 1tfi_A Transcriptional elongat 31.5 19 0.00066 19.7 1.2 16 15-30 4-19 (50)
219 2epz_A Zinc finger protein 28 31.4 7.8 0.00027 18.4 -0.4 14 51-64 10-23 (46)
220 2eoh_A Zinc finger protein 28 31.3 8.1 0.00028 18.4 -0.4 15 50-64 9-23 (46)
221 2eq2_A Zinc finger protein 347 31.3 6 0.00021 18.9 -0.9 13 51-63 10-22 (46)
222 2eq4_A Zinc finger protein 224 31.2 8.2 0.00028 18.3 -0.4 14 51-64 10-23 (46)
223 2cup_A Skeletal muscle LIM-pro 31.1 9.4 0.00032 21.9 -0.2 12 20-31 5-16 (101)
224 1v6g_A Actin binding LIM prote 31.1 9.7 0.00033 21.2 -0.1 37 21-64 16-52 (81)
225 2dlo_A Thyroid receptor-intera 31.0 20 0.00068 19.8 1.2 39 19-64 14-52 (81)
226 2adr_A ADR1; transcription reg 30.7 15 0.00052 18.2 0.6 14 51-64 28-41 (60)
227 2emk_A Zinc finger protein 28 30.6 8.5 0.00029 18.4 -0.4 14 51-64 10-23 (46)
228 2l4z_A DNA endonuclease RBBP8, 30.6 18 0.00061 22.3 1.1 39 20-64 61-99 (123)
229 2dar_A PDZ and LIM domain prot 30.6 34 0.0012 19.3 2.2 40 18-64 23-62 (90)
230 2ds5_A CLPX, ATP-dependent CLP 30.5 12 0.00041 21.0 0.2 9 54-62 12-20 (51)
231 1x5w_A Zinc finger protein 64, 30.4 16 0.00055 18.8 0.7 14 51-64 7-20 (70)
232 2jrp_A Putative cytoplasmic pr 30.4 32 0.0011 21.1 2.2 12 21-32 3-14 (81)
233 1x6e_A Zinc finger protein 24; 30.0 18 0.0006 18.8 0.9 12 52-63 13-24 (72)
234 2d9h_A Zinc finger protein 692 30.0 16 0.00055 19.1 0.7 14 51-64 36-49 (78)
235 1sp2_A SP1F2; zinc finger, tra 29.9 10 0.00034 16.3 -0.1 13 52-64 1-15 (31)
236 1x68_A FHL5 protein; four-and- 29.8 15 0.00052 20.2 0.6 42 20-64 5-46 (76)
237 1yc5_A NAD-dependent deacetyla 29.5 20 0.0007 24.5 1.3 12 20-31 145-156 (246)
238 2avu_E Flagellar transcription 29.4 16 0.00054 25.5 0.7 13 22-34 136-148 (192)
239 1x3h_A Leupaxin; paxillin fami 28.9 13 0.00044 20.5 0.2 39 20-65 15-53 (80)
240 4gzn_C ZFP-57, zinc finger pro 28.9 18 0.00061 19.6 0.8 15 50-64 29-43 (60)
241 3axs_A Probable N(2),N(2)-dime 28.9 32 0.0011 25.4 2.4 14 18-31 261-274 (392)
242 3fac_A Putative uncharacterize 28.3 23 0.0008 21.3 1.3 15 50-64 64-78 (118)
243 2lce_A B-cell lymphoma 6 prote 28.2 18 0.00063 18.8 0.7 41 18-64 15-56 (74)
244 2ytm_A Zinc finger protein 28 28.1 7.4 0.00025 18.7 -0.9 14 51-64 10-23 (46)
245 1m2k_A Silent information regu 28.1 21 0.00073 24.5 1.2 12 20-31 142-153 (249)
246 2ytr_A Zinc finger protein 347 28.0 6.1 0.00021 18.7 -1.2 13 51-63 10-22 (46)
247 2yti_A Zinc finger protein 347 28.0 6.4 0.00022 18.7 -1.1 13 51-63 10-22 (46)
248 2em0_A Zinc finger protein 224 27.7 9.6 0.00033 18.1 -0.5 13 51-63 10-22 (46)
249 3h99_A Methionyl-tRNA syntheta 27.5 40 0.0014 25.3 2.7 22 7-28 142-163 (560)
250 1va1_A Transcription factor SP 27.2 24 0.00081 16.0 1.0 14 51-64 6-21 (37)
251 2lt7_A Transcriptional regulat 26.9 24 0.00083 21.5 1.2 14 51-64 20-33 (133)
252 4e2x_A TCAB9; kijanose, tetron 26.9 42 0.0014 23.4 2.5 41 22-62 14-62 (416)
253 1q1a_A HST2 protein; ternary c 26.7 24 0.00083 24.7 1.3 11 20-30 163-173 (289)
254 1x6h_A Transcriptional repress 26.7 21 0.00073 18.6 0.8 14 51-64 13-26 (86)
255 2jvx_A NF-kappa-B essential mo 26.6 23 0.00078 17.8 0.8 12 53-64 3-14 (28)
256 1j2o_A FLIN2, fusion of rhombo 26.0 14 0.00048 22.1 -0.0 37 20-64 3-41 (114)
257 2dmi_A Teashirt homolog 3; zin 26.0 23 0.00079 19.8 0.9 15 50-64 16-30 (115)
258 1x4s_A Protein FON, zinc finge 26.0 24 0.00083 20.5 1.0 16 50-65 23-38 (59)
259 2xqn_T Testin, TESS; metal-bin 25.8 24 0.00082 21.0 1.0 40 20-64 63-104 (126)
260 3mjh_B Early endosome antigen 25.8 23 0.00079 18.4 0.8 16 51-66 3-18 (34)
261 3bvo_A CO-chaperone protein HS 25.8 17 0.00057 24.8 0.3 28 19-62 9-36 (207)
262 2i5o_A DNA polymerase ETA; zin 25.8 24 0.00082 18.8 0.9 11 54-64 10-20 (39)
263 3twl_A Formamidopyrimidine-DNA 25.5 19 0.00064 26.1 0.6 35 13-62 242-278 (310)
264 1zfd_A SWI5; DNA binding motif 25.2 12 0.00042 16.1 -0.3 13 52-64 2-16 (32)
265 3u50_C Telomerase-associated p 25.1 30 0.001 23.3 1.5 28 19-62 41-68 (172)
266 1ovx_A ATP-dependent CLP prote 25.0 16 0.00056 21.7 0.1 9 54-62 19-27 (67)
267 2cot_A Zinc finger protein 435 24.8 24 0.00082 18.5 0.8 41 18-64 16-57 (77)
268 2ytt_A Zinc finger protein 473 24.6 8.1 0.00028 18.4 -1.1 13 51-63 10-22 (46)
269 1lv3_A Hypothetical protein YA 24.6 14 0.00048 22.1 -0.2 11 21-31 10-20 (68)
270 2cur_A Skeletal muscle LIM-pro 24.4 9.8 0.00033 20.5 -0.9 38 20-64 5-42 (69)
271 3hcs_A TNF receptor-associated 24.3 11 0.00038 23.8 -0.8 38 20-64 110-148 (170)
272 1g25_A CDK-activating kinase a 24.1 19 0.00066 19.0 0.3 19 19-37 42-60 (65)
273 3ir9_A Peptide chain release f 24.0 61 0.0021 21.3 2.8 17 19-35 102-118 (166)
274 1a1h_A QGSR zinc finger peptid 23.6 25 0.00085 18.5 0.7 40 19-64 33-73 (90)
275 3k1f_M Transcription initiatio 23.5 53 0.0018 23.4 2.6 20 22-41 23-44 (197)
276 3na7_A HP0958; flagellar bioge 23.3 28 0.00096 23.9 1.1 16 50-65 219-234 (256)
277 2rgt_A Fusion of LIM/homeobox 23.0 10 0.00034 24.1 -1.2 18 15-32 1-18 (169)
278 2l3k_A Rhombotin-2, linker, LI 23.0 7.9 0.00027 23.5 -1.6 37 21-63 9-46 (123)
279 1ma3_A SIR2-AF2, transcription 22.8 42 0.0014 23.0 1.9 9 21-29 148-156 (253)
280 3mhs_C SAGA-associated factor 22.8 23 0.00078 22.7 0.5 16 20-35 70-85 (99)
281 2owo_A DNA ligase; protein-DNA 22.5 38 0.0013 27.3 1.9 15 18-32 403-417 (671)
282 1ffk_W Ribosomal protein L37AE 22.5 13 0.00046 22.3 -0.6 18 12-29 19-36 (73)
283 2k9h_A Glycoprotein; hantaviru 22.4 27 0.00093 20.5 0.7 15 19-33 27-41 (57)
284 1q14_A HST2 protein; histone d 22.0 33 0.0011 25.3 1.3 12 20-31 171-182 (361)
285 2ee8_A Protein ODD-skipped-rel 22.0 16 0.00055 20.1 -0.3 14 50-63 14-27 (106)
286 2wbs_A Krueppel-like factor 4; 21.9 30 0.001 18.2 0.8 14 51-64 63-76 (89)
287 1x6m_A GFA, glutathione-depend 21.9 34 0.0012 22.7 1.2 14 51-64 96-109 (196)
288 2eln_A Zinc finger protein 406 21.8 35 0.0012 16.9 1.0 15 50-64 6-22 (38)
289 2kmk_A Zinc finger protein GFI 21.8 28 0.00097 17.9 0.7 14 51-64 55-68 (82)
290 2gai_A DNA topoisomerase I; zi 21.5 25 0.00086 27.7 0.6 18 15-32 567-585 (633)
291 2d8x_A Protein pinch; LIM doma 21.5 19 0.00065 19.3 -0.1 39 20-65 5-43 (70)
292 2ghf_A ZHX1, zinc fingers and 21.3 30 0.001 20.6 0.8 41 19-64 17-61 (102)
293 1j8f_A SIRT2, sirtuin 2, isofo 21.1 36 0.0012 24.6 1.3 11 20-30 185-195 (323)
294 2dmd_A Zinc finger protein 64, 21.0 32 0.0011 18.4 0.9 14 51-64 62-75 (96)
295 3p8b_A DNA-directed RNA polyme 21.0 23 0.0008 21.9 0.3 8 22-29 37-44 (81)
296 2lv2_A Insulinoma-associated p 20.2 33 0.0011 19.8 0.8 38 21-64 29-67 (85)
No 1
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=93.42 E-value=0.037 Score=31.81 Aligned_cols=38 Identities=26% Similarity=0.624 Sum_probs=25.9
Q ss_pred eCCceeeeeecCCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeeccccee
Q 035287 7 FDLREKVIRRNGADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRL 63 (68)
Q Consensus 7 cde~~kv~~~~~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L 63 (68)
+|+ +++.+. --.||.||.++. +. ++..+++|..|+-..
T Consensus 9 v~~-gki~~~---~~fCPkCG~~~~------------ma---~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 9 IAD-GKLVRK---HRFCPRCGPGVF------------LA---EHADRYSCGRCGYTE 46 (55)
T ss_dssp CCC-CCCCCS---SCCCTTTTTTCC------------CE---ECSSEEECTTTCCCE
T ss_pred EcC-CEEEEc---cccCcCCCCcee------------Ee---ccCCEEECCCCCCEE
Confidence 455 666542 467999998772 21 445699999998653
No 2
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.17 E-value=0.11 Score=29.31 Aligned_cols=37 Identities=32% Similarity=0.706 Sum_probs=25.1
Q ss_pred eCCceeeeeecCCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccce
Q 035287 7 FDLREKVIRRNGADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRR 62 (68)
Q Consensus 7 cde~~kv~~~~~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~ 62 (68)
+| .+||.+. .--||.||.++..++ +..++.|..||-.
T Consensus 10 v~-~~kv~~~---~k~CP~CG~~~fm~~---------------~~~R~~C~kCG~t 46 (50)
T 3j20_Y 10 IK-DGKVIRK---NKFCPRCGPGVFMAD---------------HGDRWACGKCGYT 46 (50)
T ss_dssp EC-SSCEECS---SEECSSSCSSCEEEE---------------CSSEEECSSSCCE
T ss_pred EE-CCEEEEe---cccCCCCCCceEEec---------------CCCeEECCCCCCE
Confidence 35 5666654 346999998875443 2467899999854
No 3
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=91.18 E-value=0.083 Score=38.85 Aligned_cols=44 Identities=23% Similarity=0.498 Sum_probs=34.1
Q ss_pred CCCCcCCCCCCceEEEEec-----ceeeeEEeeeeeeecc--eEEeecccc
Q 035287 18 GADAACPYCGGPVLAIDFD-----AHLRFCFLPISHKVKK--KFYCTICSR 61 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~a~Dve-----s~~rfCflP~~~k~kr--k~~Ct~C~r 61 (68)
...|.||-||+.-++.-+. ...|++.=.+|.-.|+ +..|+.||.
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEE 230 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCC
Confidence 4579999999999887664 5678887777765553 668999985
No 4
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=89.19 E-value=0.79 Score=27.85 Aligned_cols=43 Identities=19% Similarity=0.391 Sum_probs=26.6
Q ss_pred cCCCCCCceEEEEecc-eeeeEEeeeeeeecceEEeecccceee
Q 035287 22 ACPYCGGPVLAIDFDA-HLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 22 ~Cp~CGG~v~a~Dves-~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
.||.||+.....+.++ ...+--.-+-.+.=..++|..||..+.
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEee
Confidence 5999999865544433 223333334444446789999998653
No 5
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=88.33 E-value=0.48 Score=31.26 Aligned_cols=41 Identities=27% Similarity=0.584 Sum_probs=29.7
Q ss_pred EeCCceeeeeecCCCCcCCC--CCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 6 IFDLREKVIRRNGADAACPY--CGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 6 vcde~~kv~~~~~A~G~Cp~--CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
=+|+++||.+.+. .||+ ||.+|-.++- +.|++|-.|+-.+.
T Consensus 107 ~~~~~~~~~~~~~---~c~~~~cg~g~fma~h---------------~~r~~cgkc~~t~~ 149 (152)
T 3u5c_f 107 KVDAEGKVTKLRR---ECSNPTCGAGVFLANH---------------KDRLYCGKCHSVYK 149 (152)
T ss_dssp EECSSSCEECCSC---BCCSTTSCSSSBEEEC---------------SSCEEESSSSSCCE
T ss_pred EEccCCeEEECcC---cCCCccCCCceEeccc---------------CCCcccCCCceEEE
Confidence 3688888876644 5999 9988766543 35788888886553
No 6
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=87.46 E-value=1.2 Score=25.98 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=24.6
Q ss_pred cCCCCCCceE---EEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 22 ACPYCGGPVL---AIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 22 ~Cp~CGG~v~---a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
.||.||++-. ..|+.-.+.=.-+ -.+.=...+|+.||..+-
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~--~I~~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKT--VLKGIHGLYCVHCEESIM 47 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEE--EEEEEEEEEETTTCCEEC
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEE--EEcCceeEECCCCCCEEE
Confidence 5999998633 2333333333322 224556889999998764
No 7
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=83.46 E-value=0.83 Score=27.21 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=20.8
Q ss_pred CcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 21 AACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
-+||.|+|++...+. .....|+.|++.+-
T Consensus 9 L~CP~ck~~L~~~~~---------------~~~LiC~~cg~~YP 37 (70)
T 2js4_A 9 LVCPVCKGRLEFQRA---------------QAELVCNADRLAFP 37 (70)
T ss_dssp CBCTTTCCBEEEETT---------------TTEEEETTTTEEEE
T ss_pred eECCCCCCcCEEeCC---------------CCEEEcCCCCceec
Confidence 379999998875432 35667888887654
No 8
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=83.19 E-value=0.89 Score=26.93 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=21.0
Q ss_pred CcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 21 AACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
-+||.|+|++...+. +....|+.|++.+-
T Consensus 9 L~CP~ck~~L~~~~~---------------~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQD---------------KQELWSRQAKLAYP 37 (68)
T ss_dssp CBCSSSCCBCEEETT---------------TTEEEETTTTEEEE
T ss_pred eECCCCCCcCeEeCC---------------CCEEEcCCCCcEec
Confidence 379999999876432 35667888887664
No 9
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=82.10 E-value=1.1 Score=26.55 Aligned_cols=28 Identities=25% Similarity=0.552 Sum_probs=20.5
Q ss_pred cCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 22 ACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
+||.|+|++...+. +....|+.|++.+-
T Consensus 10 ~CP~ck~~L~~~~~---------------~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 10 VCPLCKGPLVFDKS---------------KDELICKGDRLAFP 37 (68)
T ss_dssp BCTTTCCBCEEETT---------------TTEEEETTTTEEEE
T ss_pred ECCCCCCcCeEeCC---------------CCEEEcCCCCcEec
Confidence 79999999876432 35667888887654
No 10
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=80.75 E-value=0.98 Score=31.83 Aligned_cols=26 Identities=19% Similarity=0.680 Sum_probs=19.3
Q ss_pred cCCCCCCceEEEEecceeeeEEeeeeeeecceEEeeccc
Q 035287 22 ACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICS 60 (68)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~ 60 (68)
.||+||+++.-..+- ...-|+|+.|-
T Consensus 236 pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEKTTLS-------------SRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEEEEET-------------TEEEEECTTTC
T ss_pred CCCCCCCEeEEEEEC-------------CCCeEECCCCC
Confidence 499999999887775 34556676663
No 11
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=80.32 E-value=1.1 Score=31.70 Aligned_cols=27 Identities=22% Similarity=0.796 Sum_probs=20.7
Q ss_pred cCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccc
Q 035287 22 ACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSR 61 (68)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r 61 (68)
.||+||+++.-..+- ...-|+|+.|-+
T Consensus 244 pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 244 KCSRCGAEIQKIKVA-------------GRGTHFCPVCQQ 270 (271)
T ss_dssp BCTTTCCBCEEEEET-------------TEEEEECTTTSC
T ss_pred CCCCCCCEeeEEEEC-------------CCceEECCCCCC
Confidence 499999999887775 355677777754
No 12
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=80.01 E-value=0.35 Score=25.78 Aligned_cols=41 Identities=20% Similarity=0.488 Sum_probs=27.2
Q ss_pred CCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceeeec
Q 035287 18 GADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLVPA 66 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~~ 66 (68)
.-|=.|+.||-...-. +.+. ..+...+.|.|..||+.....
T Consensus 12 ~k~~~C~~C~k~F~~~---~~l~-----~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDL---EANQ-----LFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp SSEEECSSSCCEEEHH---HHHH-----HEETTTTEEBCSSSCCBCEEC
T ss_pred CCCccCCCCCchhccH---HHhH-----hhcCCCCCEECCCCCCccccC
Confidence 3456799999765432 2222 334556889999999987654
No 13
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=79.94 E-value=1.2 Score=31.78 Aligned_cols=27 Identities=26% Similarity=0.702 Sum_probs=20.3
Q ss_pred CcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeeccc
Q 035287 21 AACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICS 60 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~ 60 (68)
-.||+||+++.-..+- ...-|+|+.|-
T Consensus 246 ~pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVA-------------GRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEET-------------TEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEEC-------------CCCeEECCCCC
Confidence 4699999999887765 25567777774
No 14
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=79.71 E-value=1.3 Score=28.48 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=18.6
Q ss_pred EEeCCceeeeeecCCCCcCCCCCCceEEEE
Q 035287 5 SIFDLREKVIRRNGADAACPYCGGPVLAID 34 (68)
Q Consensus 5 ~vcde~~kv~~~~~A~G~Cp~CGG~v~a~D 34 (68)
+.|..-+++-........||.||+++.-.|
T Consensus 133 y~C~~Cg~~~~~~~~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 133 YVCIGCGRKFSTLPPGGVCPDCGSKVKLIP 162 (165)
T ss_dssp EEESSSCCEESSCCGGGBCTTTCCBEEECC
T ss_pred EECCCCCCcccCCCCCCcCCCCCCcceeCC
Confidence 445555555544333458999999876543
No 15
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=79.08 E-value=1.2 Score=31.56 Aligned_cols=26 Identities=35% Similarity=0.999 Sum_probs=19.5
Q ss_pred cCCCCCCceEEEEecceeeeEEeeeeeeecceEEeeccc
Q 035287 22 ACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICS 60 (68)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~ 60 (68)
.||+||+++.-..+- ...-|+|+.|-
T Consensus 242 pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ 267 (268)
T 1k82_A 242 PCRVCGTPIVATKHA-------------QRATFYCRQCQ 267 (268)
T ss_dssp BCTTTCCBCEEEEET-------------TEEEEECTTTC
T ss_pred CCCCCCCEeeEEEEC-------------CCceEECCCCC
Confidence 499999999887775 24566777774
No 16
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=78.64 E-value=1.3 Score=26.22 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=20.6
Q ss_pred CcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 21 AACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
-+||.|+|++...+- +....|+.|++.+-
T Consensus 9 L~CP~ck~~L~~~~~---------------~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 9 LACPICKGPLKLSAD---------------KTELISKGAGLAYP 37 (69)
T ss_dssp CCCTTTCCCCEECTT---------------SSEEEETTTTEEEE
T ss_pred eeCCCCCCcCeEeCC---------------CCEEEcCCCCcEec
Confidence 379999999875322 35567888887654
No 17
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=78.26 E-value=1.3 Score=31.48 Aligned_cols=28 Identities=29% Similarity=0.718 Sum_probs=21.1
Q ss_pred CcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccc
Q 035287 21 AACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSR 61 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r 61 (68)
-.||+||+++.-..+- ...-|+|+.|-+
T Consensus 236 ~pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVA-------------GRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESS-------------SCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEEC-------------CCceEECCCCCC
Confidence 3499999999887774 356677887754
No 18
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=77.03 E-value=2 Score=25.39 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=20.7
Q ss_pred CcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 21 AACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
-+||.|+|++.... .+....|+.|++.+-
T Consensus 11 L~CP~ck~~L~~~~---------------~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 11 LACPKDKGPLRYLE---------------SEQLLVNERLNLAYR 39 (67)
T ss_dssp CBCTTTCCBCEEET---------------TTTEEEETTTTEEEE
T ss_pred hCCCCCCCcCeEeC---------------CCCEEEcCCCCcccc
Confidence 47999999887532 245667888887654
No 19
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=74.90 E-value=1.1 Score=19.21 Aligned_cols=13 Identities=38% Similarity=0.961 Sum_probs=10.3
Q ss_pred ceEEeecccceee
Q 035287 52 KKFYCTICSRRLV 64 (68)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (68)
+.|.|+.||+...
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvh_A 2 KPFSCSLCPQRSR 14 (27)
T ss_dssp CCEECSSSSCEES
T ss_pred cCccCCCcChhhC
Confidence 5788999998764
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=74.81 E-value=2.2 Score=22.85 Aligned_cols=29 Identities=24% Similarity=0.642 Sum_probs=18.0
Q ss_pred CcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeeccccee
Q 035287 21 AACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRL 63 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L 63 (68)
-.||.|||.-...|-+ .....|+.||..+
T Consensus 6 ~~CP~C~~~~l~~d~~--------------~gelvC~~CG~v~ 34 (50)
T 1pft_A 6 KVCPACESAELIYDPE--------------RGEIVCAKCGYVI 34 (50)
T ss_dssp CSCTTTSCCCEEEETT--------------TTEEEESSSCCBC
T ss_pred EeCcCCCCcceEEcCC--------------CCeEECcccCCcc
Confidence 3699999932233332 3457778887654
No 21
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=73.61 E-value=3.4 Score=22.74 Aligned_cols=41 Identities=24% Similarity=0.449 Sum_probs=23.3
Q ss_pred CCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceeee
Q 035287 20 DAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLVP 65 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (68)
.-.||.||.. .|.=...|+|====| ...-|.|+.||-+-+.
T Consensus 15 ~~~Cp~Cg~~-~~~~~q~Q~rsadep----~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGND-TAYWWEMQTRAGDEP----STIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCS-EEEEEEECCSSSSCS----SEEEEEESSSCCEEEC
T ss_pred EeECCCCCCC-EEEEEEeecccCCCC----CcEEEEcCCCCCEecc
Confidence 3569999984 444344555410011 1134789999877553
No 22
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=72.73 E-value=2.6 Score=26.21 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=7.7
Q ss_pred cCCCC-cCCCCCCc
Q 035287 17 NGADA-ACPYCGGP 29 (68)
Q Consensus 17 ~~A~G-~Cp~CGG~ 29 (68)
...+. .||.||+.
T Consensus 86 ~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 86 NALDYGVCEKCHSK 99 (119)
T ss_dssp CCSTTCCCSSSSSC
T ss_pred CCCCCCcCccccCC
Confidence 34444 67777766
No 23
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=72.21 E-value=3.5 Score=23.33 Aligned_cols=27 Identities=33% Similarity=0.706 Sum_probs=19.9
Q ss_pred CcCCCCCCceEEEEecceeeeEEeeeeeeecceEEee--cccceee
Q 035287 21 AACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCT--ICSRRLV 64 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct--~C~r~L~ 64 (68)
-+||.|.|++...+ ....|+ .|++.+-
T Consensus 11 L~CP~c~~~L~~~~-----------------~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 11 LACPACHAPLEERD-----------------AELICTGQDCGLAYP 39 (56)
T ss_dssp CCCSSSCSCEEEET-----------------TEEEECSSSCCCEEE
T ss_pred eeCCCCCCcceecC-----------------CEEEcCCcCCCcEEe
Confidence 37999999877543 566788 8887654
No 24
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=72.11 E-value=1.5 Score=32.11 Aligned_cols=29 Identities=17% Similarity=0.707 Sum_probs=20.0
Q ss_pred cCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccc
Q 035287 22 ACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSR 61 (68)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r 61 (68)
.||+||.++.-..+-. .....|+|+.|.+
T Consensus 253 pC~~CGt~I~~~~~g~-----------~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGE-----------NSRMTYFCPHCQK 281 (287)
T ss_dssp BCTTTCCBCEEECSST-----------TCCCEEECTTTSC
T ss_pred CCCCCCCEEEEEEecC-----------CCCCEEECCCccc
Confidence 6999999998777641 1245666776654
No 25
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=71.61 E-value=1.4 Score=18.74 Aligned_cols=13 Identities=38% Similarity=0.966 Sum_probs=9.8
Q ss_pred ceEEeecccceee
Q 035287 52 KKFYCTICSRRLV 64 (68)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (68)
++|.|+.|++...
T Consensus 1 k~~~C~~C~k~f~ 13 (29)
T 1rik_A 1 YKFACPECPKRFM 13 (29)
T ss_dssp CCEECSSSSCEES
T ss_pred CCccCCCCCchhC
Confidence 4688999988754
No 26
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.36 E-value=0.79 Score=26.61 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceeee
Q 035287 18 GADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLVP 65 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (68)
+....|+.||..|...++-.. +--.| +..=|.|+.|++.|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a-----~~~~~-H~~CF~C~~C~~~L~~ 54 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLA-----NQQVF-HISCFRCSYCNNKLSL 54 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEEC-----SSSEE-ETTTCBCTTTCCBCCT
T ss_pred CCCCcCccCCCccCCceeEEE-----CCCEE-CCCCCeeCCCCCCCCC
Confidence 346789999999875432111 11111 3355789999998863
No 27
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=72.74 E-value=0.93 Score=19.23 Aligned_cols=13 Identities=38% Similarity=1.032 Sum_probs=9.7
Q ss_pred ceEEeecccceee
Q 035287 52 KKFYCTICSRRLV 64 (68)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (68)
+.|.|..||+...
T Consensus 1 kp~~C~~C~k~f~ 13 (26)
T 2lvu_A 1 KPYVCERCGKRFV 13 (26)
Confidence 4688888987654
No 28
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=69.35 E-value=1.6 Score=18.47 Aligned_cols=13 Identities=31% Similarity=0.876 Sum_probs=9.9
Q ss_pred ceEEeecccceee
Q 035287 52 KKFYCTICSRRLV 64 (68)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (68)
+.|.|..|++...
T Consensus 2 k~~~C~~C~~~f~ 14 (30)
T 2m0d_A 2 KPYQCDYCGRSFS 14 (30)
T ss_dssp CCEECTTTCCEES
T ss_pred cCccCCCCCcccC
Confidence 5688889988754
No 29
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=68.37 E-value=1.7 Score=18.29 Aligned_cols=13 Identities=15% Similarity=0.639 Sum_probs=9.5
Q ss_pred ceEEeecccceee
Q 035287 52 KKFYCTICSRRLV 64 (68)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (68)
+.|.|..|++...
T Consensus 1 ~~~~C~~C~k~f~ 13 (29)
T 2m0f_A 1 GPLKCRECGKQFT 13 (29)
T ss_dssp CCEECTTTSCEES
T ss_pred CCccCCCCCCccC
Confidence 3578888887654
No 30
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=68.31 E-value=5.2 Score=27.63 Aligned_cols=41 Identities=24% Similarity=0.538 Sum_probs=26.9
Q ss_pred EEeCCceeeeeecCCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeeccccee
Q 035287 5 SIFDLREKVIRRNGADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRL 63 (68)
Q Consensus 5 ~vcde~~kv~~~~~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L 63 (68)
|=+|++++|.+.. -.||+||-++..+. +..|++|-.|+-.+
T Consensus 101 y~Vd~~Gkv~~~~---~~Cp~Cg~g~fma~---------------h~dR~~CGkC~~t~ 141 (189)
T 2xzm_9 101 YKLENNGKVSLQQ---KGCPKCGPGIFMAK---------------HYDRHYCGKCHLTL 141 (189)
T ss_dssp EEEETTTEEEECS---EECSTTCSSCEEEE---------------CSSCEEETTTCCCB
T ss_pred EEECCCceEEEcc---ccCCccCCCccccC---------------ccCCCccCCceeEE
Confidence 4467778887665 47999997754433 23366787777543
No 31
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=67.91 E-value=1.8 Score=19.44 Aligned_cols=15 Identities=33% Similarity=0.826 Sum_probs=11.7
Q ss_pred cceEEeecccceeee
Q 035287 51 KKKFYCTICSRRLVP 65 (68)
Q Consensus 51 krk~~Ct~C~r~L~~ 65 (68)
.+.|.|..|++....
T Consensus 5 ~k~~~C~~C~k~f~~ 19 (35)
T 1srk_A 5 KRPFVCRICLSAFTT 19 (35)
T ss_dssp CSCEECSSSCCEESS
T ss_pred CcCeeCCCCCcccCC
Confidence 567999999987643
No 32
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=67.74 E-value=1.9 Score=18.36 Aligned_cols=13 Identities=23% Similarity=1.068 Sum_probs=9.8
Q ss_pred ceEEeecccceee
Q 035287 52 KKFYCTICSRRLV 64 (68)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (68)
+.|.|..|++...
T Consensus 2 k~~~C~~C~k~f~ 14 (28)
T 2kvf_A 2 RPYSCSVCGKRFS 14 (28)
T ss_dssp CSEECSSSCCEES
T ss_pred cCccCCCCCcccC
Confidence 4688999988754
No 33
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=66.67 E-value=1.1 Score=24.14 Aligned_cols=42 Identities=19% Similarity=0.494 Sum_probs=25.9
Q ss_pred cCCCCcCCCCCCceEEEEe--cceeeeEEeeeeeeecceEEeecccceeee
Q 035287 17 NGADAACPYCGGPVLAIDF--DAHLRFCFLPISHKVKKKFYCTICSRRLVP 65 (68)
Q Consensus 17 ~~A~G~Cp~CGG~v~a~Dv--es~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (68)
.+....|+.||.+|...|. +..-+. | +..=|.|+.|++.|..
T Consensus 8 ~~~~~~C~~C~~~i~~~e~~~~~~~~~-~------H~~CF~C~~C~~~L~~ 51 (72)
T 3f6q_B 8 GSASATCERCKGGFAPAEKIVNSNGEL-Y------HEQCFVCAQCFQQFPE 51 (72)
T ss_dssp CCTTCBCTTTCCBCCTTCEEEEETTEE-E------ETTTSSCTTTCCCCGG
T ss_pred CcCCccchhcCccccCCceEEEeCcCe-e------CcCCCcccCCCCCCCC
Confidence 3456789999999885431 111111 1 2345679999988853
No 34
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=64.89 E-value=1.6 Score=24.53 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=23.5
Q ss_pred CCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceeee
Q 035287 18 GADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLVP 65 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (68)
.....|+.|+-+|...++-.. +--.| ++.=|.|+.|++.|..
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a-----~~~~~-H~~CF~C~~C~~~L~~ 46 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQC-----DGRSF-HRCCFLCMVCRKNLDS 46 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEE-----TTEEE-ESSSEECSSSCCEECS
T ss_pred CCCCcCcCcCccccCceeEEe-----CCccc-ccccCccCCCCCCCCC
Confidence 446789999998863332111 11111 2345789999998864
No 35
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=64.73 E-value=5.9 Score=26.37 Aligned_cols=12 Identities=50% Similarity=1.190 Sum_probs=8.1
Q ss_pred CCCCcCCCCCCc
Q 035287 18 GADAACPYCGGP 29 (68)
Q Consensus 18 ~A~G~Cp~CGG~ 29 (68)
.+|..||-||.+
T Consensus 151 ~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 151 EAPEYCPVCGAP 162 (170)
T ss_dssp CCCSBCTTTCCB
T ss_pred CCCCCCCCCCCC
Confidence 466677777754
No 36
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=64.64 E-value=2.2 Score=18.32 Aligned_cols=13 Identities=15% Similarity=0.593 Sum_probs=10.1
Q ss_pred ceEEeecccceee
Q 035287 52 KKFYCTICSRRLV 64 (68)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (68)
+.|.|..|++...
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvg_A 2 APYRCPLCRAGCP 14 (27)
T ss_dssp CTEEETTTTEEES
T ss_pred cCcCCCCCCcccC
Confidence 5688999998754
No 37
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=64.18 E-value=2.3 Score=18.95 Aligned_cols=14 Identities=21% Similarity=0.909 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 5 ~k~~~C~~C~k~f~ 18 (35)
T 2elx_A 5 SSGYVCALCLKKFV 18 (35)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCcchhC
Confidence 46789999998754
No 38
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.14 E-value=3.4 Score=19.12 Aligned_cols=15 Identities=20% Similarity=0.707 Sum_probs=11.7
Q ss_pred cceEEeecccceeee
Q 035287 51 KKKFYCTICSRRLVP 65 (68)
Q Consensus 51 krk~~Ct~C~r~L~~ 65 (68)
.+.|.|+.|++....
T Consensus 7 ~k~~~C~~C~k~f~~ 21 (37)
T 2elm_A 7 GHLYYCSQCHYSSIT 21 (37)
T ss_dssp SCEEECSSSSCEEEC
T ss_pred CcCeECCCCCcccCC
Confidence 467999999987653
No 39
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=63.49 E-value=5.1 Score=25.89 Aligned_cols=10 Identities=50% Similarity=1.036 Sum_probs=6.5
Q ss_pred CCcCCCCCCc
Q 035287 20 DAACPYCGGP 29 (68)
Q Consensus 20 ~G~Cp~CGG~ 29 (68)
+..||.||+.
T Consensus 107 ~~~CP~Cgs~ 116 (139)
T 3a43_A 107 FLACPKCGSH 116 (139)
T ss_dssp GCSCSSSSCC
T ss_pred CCcCccccCC
Confidence 5666666665
No 40
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.51 E-value=0.46 Score=26.78 Aligned_cols=40 Identities=20% Similarity=0.452 Sum_probs=29.2
Q ss_pred cCCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeeccccee
Q 035287 17 NGADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRL 63 (68)
Q Consensus 17 ~~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L 63 (68)
..-|-.|++||-.+...|++.+..-| -.+.+.|..|++..
T Consensus 14 ~~r~~~C~~C~~~~~~~~L~~H~~~c-------~~~~~~C~~C~~~~ 53 (75)
T 2d9k_A 14 PLRLAVCQHCDLELSILKLKEHEDYC-------GARTELCGNCGRNV 53 (75)
T ss_dssp CCCCEECSSSCCEECHHHHHHHHHHH-------HHCEEECSSSCCEE
T ss_pred CCcccCCcccChHhhHHHHHHHHhHc-------CCCceEcccCCCcC
Confidence 34567899999988877777665433 35778899998864
No 41
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.53 E-value=3 Score=18.89 Aligned_cols=14 Identities=29% Similarity=0.672 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elq_A 7 GKPFKCSLCEYATR 20 (36)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCccCCCCCchhC
Confidence 46789999988764
No 42
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=64.41 E-value=1.9 Score=18.51 Aligned_cols=13 Identities=23% Similarity=0.771 Sum_probs=9.0
Q ss_pred ceEEeecccceee
Q 035287 52 KKFYCTICSRRLV 64 (68)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (68)
+.|.|..|++...
T Consensus 1 k~~~C~~C~k~f~ 13 (29)
T 2lvt_A 1 KPCQCVMCGKAFT 13 (29)
Confidence 3578888887653
No 43
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=63.89 E-value=1.9 Score=18.35 Aligned_cols=13 Identities=31% Similarity=0.904 Sum_probs=8.9
Q ss_pred ceEEeecccceee
Q 035287 52 KKFYCTICSRRLV 64 (68)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (68)
+.|.|..|++...
T Consensus 2 k~~~C~~C~k~f~ 14 (30)
T 2lvr_A 2 KPYVCIHCQRQFA 14 (30)
Confidence 3577888887653
No 44
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=58.85 E-value=1.5 Score=18.60 Aligned_cols=11 Identities=36% Similarity=1.198 Sum_probs=7.6
Q ss_pred eEEeeccccee
Q 035287 53 KFYCTICSRRL 63 (68)
Q Consensus 53 k~~Ct~C~r~L 63 (68)
.|.|..|++..
T Consensus 2 ~~~C~~C~~~f 12 (29)
T 1ard_A 2 SFVCEVCTRAF 12 (29)
T ss_dssp CCBCTTTCCBC
T ss_pred CeECCCCCccc
Confidence 46777777654
No 45
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.84 E-value=3.7 Score=18.65 Aligned_cols=14 Identities=14% Similarity=0.529 Sum_probs=10.7
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (37)
T 2elp_A 7 GRAMKCPYCDFYFM 20 (37)
T ss_dssp CCCEECSSSSCEEC
T ss_pred CCCeECCCCChhhc
Confidence 46788999988754
No 46
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.77 E-value=3.7 Score=18.54 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=10.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elv_A 7 GLLYDCHICERKFK 20 (36)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCccC
Confidence 46789999988654
No 47
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.04 E-value=4.3 Score=18.13 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=11.3
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 6 ~~k~~~C~~C~k~f~ 20 (36)
T 2elt_A 6 SGKPYKCPQCSYASA 20 (36)
T ss_dssp CCCSEECSSSSCEES
T ss_pred CCCCCCCCCCCcccC
Confidence 356799999998754
No 48
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=55.19 E-value=3.8 Score=27.68 Aligned_cols=34 Identities=18% Similarity=0.431 Sum_probs=19.8
Q ss_pred eecCCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccce
Q 035287 15 RRNGADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRR 62 (68)
Q Consensus 15 ~~~~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~ 62 (68)
+.-.-.+.||.|||. | ..+| +-+ --++|-.||..
T Consensus 9 ~~~~~~~~CP~Cg~~----d---~~~~-----~~d--g~~~C~~Cg~~ 42 (255)
T 1nui_A 9 SVFLYHIPCDNCGSS----D---GNSL-----FSD--GHTFCYVCEKW 42 (255)
T ss_dssp -CEEEEECCSSSCCS----S---CEEE-----ETT--SCEEETTTCCE
T ss_pred cceecCCcCCCCCCC----C---CceE-----eCC--CCeecccCCCc
Confidence 333447899999996 2 1221 112 13788889864
No 49
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=54.96 E-value=4.2 Score=18.91 Aligned_cols=14 Identities=14% Similarity=0.731 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 9 ~~~~~C~~C~k~f~ 22 (42)
T 2epc_A 9 ETPYLCGQCGKSFT 22 (42)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCeECCCCCcccC
Confidence 46789999988764
No 50
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.63 E-value=2.4 Score=23.56 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=24.6
Q ss_pred CCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 18 GADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
..+..|+.|+-+|...+.-. .+--.| ++.=|.|+.|++.|.
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~-----a~~~~~-H~~CF~C~~C~~~L~ 47 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVS-----SLGKDW-HKFCLKCERCSKTLT 47 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEE-----ETTEEE-ETTTCBCSSSCCBCC
T ss_pred CCCCCCcCCCCEeECCeEEE-----ECCeEe-eCCCCCCCCCCCccC
Confidence 45678999999887433211 111111 234577899988886
No 51
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=54.61 E-value=2.1 Score=17.91 Aligned_cols=12 Identities=17% Similarity=0.711 Sum_probs=8.0
Q ss_pred eEEeecccceee
Q 035287 53 KFYCTICSRRLV 64 (68)
Q Consensus 53 k~~Ct~C~r~L~ 64 (68)
.|.|..|++...
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 2m0e_A 2 EHKCPHCDKKFN 13 (29)
T ss_dssp CCCCSSCCCCCC
T ss_pred CCcCCCCCcccC
Confidence 467777877643
No 52
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=54.56 E-value=3.8 Score=18.99 Aligned_cols=14 Identities=21% Similarity=0.859 Sum_probs=10.7
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 4 ~k~~~C~~C~k~f~ 17 (39)
T 1njq_A 4 PRSYTCSFCKREFR 17 (39)
T ss_dssp SSSEECTTTCCEES
T ss_pred CCceECCCCCcccC
Confidence 35789999998764
No 53
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=54.45 E-value=7.9 Score=23.59 Aligned_cols=34 Identities=24% Similarity=0.555 Sum_probs=23.1
Q ss_pred eecCCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeeccccee
Q 035287 15 RRNGADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRL 63 (68)
Q Consensus 15 ~~~~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L 63 (68)
-+|.+.-.||.||+. ..-|..+. ...|..|+...
T Consensus 22 ~~q~~~y~Cp~CG~~-~v~r~atG--------------iW~C~~Cg~~~ 55 (83)
T 1vq8_Z 22 SEMNEDHACPNCGED-RVDRQGTG--------------IWQCSYCDYKF 55 (83)
T ss_dssp HHHHSCEECSSSCCE-EEEEEETT--------------EEEETTTCCEE
T ss_pred HhccccCcCCCCCCc-ceeccCCC--------------eEECCCCCCEe
Confidence 456777889999974 34455543 55688887753
No 54
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=53.68 E-value=5.7 Score=24.80 Aligned_cols=31 Identities=13% Similarity=0.301 Sum_probs=18.8
Q ss_pred CcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccce
Q 035287 21 AACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRR 62 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~ 62 (68)
--||.||..+..-.-+. ..+-+|.|..|+-.
T Consensus 5 ~FCp~Cgn~L~~~~~~~-----------~~~~~~~C~~C~y~ 35 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKV-----------DRVLRLACRNCDYS 35 (113)
T ss_dssp CCCSSSCCCCEECCCTT-----------TCCCCEECSSSCCE
T ss_pred eeCcCCCCEeeEcccCC-----------CCeeEEECCCCCCe
Confidence 35888888876654321 12346777777653
No 55
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=53.25 E-value=4.6 Score=18.86 Aligned_cols=14 Identities=14% Similarity=0.664 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (42)
T 2el5_A 8 ENPYECSECGKAFN 21 (42)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCccCCCcChhhC
Confidence 46789999998754
No 56
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.22 E-value=4.8 Score=18.11 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=11.0
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 6 ~~k~~~C~~C~k~f~ 20 (36)
T 2els_A 6 SGKIFTCEYCNKVFK 20 (36)
T ss_dssp CCCCEECTTTCCEES
T ss_pred CCCCEECCCCCceeC
Confidence 346788999988653
No 57
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=52.86 E-value=12 Score=24.97 Aligned_cols=12 Identities=50% Similarity=1.171 Sum_probs=7.4
Q ss_pred CCCCcCCCCCCc
Q 035287 18 GADAACPYCGGP 29 (68)
Q Consensus 18 ~A~G~Cp~CGG~ 29 (68)
.+|..||-||.+
T Consensus 169 ~~p~~CP~C~~~ 180 (191)
T 1lko_A 169 GAPELCPACAHP 180 (191)
T ss_dssp ECCSBCTTTCCB
T ss_pred CCCCCCCCCcCC
Confidence 455566666665
No 58
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=52.49 E-value=5 Score=24.14 Aligned_cols=12 Identities=33% Similarity=0.991 Sum_probs=10.0
Q ss_pred CCcCCCCCCceE
Q 035287 20 DAACPYCGGPVL 31 (68)
Q Consensus 20 ~G~Cp~CGG~v~ 31 (68)
.|.||-||..+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 678999998765
No 59
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=52.34 E-value=2.2 Score=17.97 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=8.1
Q ss_pred eEEeecccceee
Q 035287 53 KFYCTICSRRLV 64 (68)
Q Consensus 53 k~~Ct~C~r~L~ 64 (68)
.|.|..|++...
T Consensus 2 ~~~C~~C~k~f~ 13 (30)
T 1klr_A 2 TYQCQYCEFRSA 13 (30)
T ss_dssp CCCCSSSSCCCS
T ss_pred CccCCCCCCccC
Confidence 467788877653
No 60
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.28 E-value=4.7 Score=19.09 Aligned_cols=14 Identities=29% Similarity=0.807 Sum_probs=11.1
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.++|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2yu5_A 10 ENPFKCSKCDRVFT 23 (44)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCeECCCCCchhC
Confidence 46799999998764
No 61
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.71 E-value=4.8 Score=19.06 Aligned_cols=14 Identities=21% Similarity=0.776 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2emb_A 10 RKRYECSKCQATFN 23 (44)
T ss_dssp CSSEECTTTCCEES
T ss_pred CCCeECCCCCCccC
Confidence 46788999988764
No 62
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.51 E-value=5.2 Score=19.08 Aligned_cols=15 Identities=20% Similarity=0.696 Sum_probs=11.5
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~F~ 23 (44)
T 2epv_A 9 GEKPYECNECGKAFI 23 (44)
T ss_dssp CCCSEECSSSCCEES
T ss_pred CCcCeECCCCCcccC
Confidence 356799999998754
No 63
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=51.48 E-value=8.5 Score=29.43 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=26.6
Q ss_pred CCCcCCCCCCceEEEEecceeeeE--Eeeeeeeec-ceEEeeccccee
Q 035287 19 ADAACPYCGGPVLAIDFDAHLRFC--FLPISHKVK-KKFYCTICSRRL 63 (68)
Q Consensus 19 A~G~Cp~CGG~v~a~Dves~~rfC--flP~~~k~k-rk~~Ct~C~r~L 63 (68)
-++.||.||..-. +|+. =||.+.+.- -.|.|..||-+-
T Consensus 11 ~~s~Cp~C~~~g~-------t~~~~~~IP~F~eVii~Sf~C~~CGyrn 51 (404)
T 2qkd_A 11 IESLCMNCYRNGT-------TRLLLTKIPFFREIIVSSFSCEHCGWNN 51 (404)
T ss_dssp CEEECTTTSSEEE-------EEEEEEEETTTEEEEEEEEECTTTCCEE
T ss_pred ccccCCCCCCCce-------EEEEEEcCCCCceEEEEEEECCCCCCch
Confidence 3567999996543 3333 378777665 789999999763
No 64
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=51.35 E-value=12 Score=22.09 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=5.6
Q ss_pred CCCcCCCCCCc
Q 035287 19 ADAACPYCGGP 29 (68)
Q Consensus 19 A~G~Cp~CGG~ 29 (68)
.--.|+.||-.
T Consensus 27 v~Y~C~~CG~~ 37 (70)
T 1twf_L 27 LKYICAECSSK 37 (70)
T ss_dssp CCEECSSSCCE
T ss_pred EEEECCCCCCc
Confidence 33455555554
No 65
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.67 E-value=6.7 Score=21.46 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=27.0
Q ss_pred eeecCCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceeee
Q 035287 14 IRRNGADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLVP 65 (68)
Q Consensus 14 ~~~~~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (68)
+........|+.||.++...+.-... .--.| ++.=|.|+.|++.|..
T Consensus 5 ~~~~~~~~~C~~C~~~I~~~~~~~~a----~~~~~-H~~CF~C~~C~~~L~~ 51 (77)
T 1g47_A 5 MANALASATCERCKGGFAPAEKIVNS----NGELY-HEQCFVCAQCFQQFPE 51 (77)
T ss_dssp CCSCCCCCBCSSSCCBCCSTTTCEEE----TTEEE-CTTTCCCTTTCCCCGG
T ss_pred hccCCCCCCchhcCCccCCCceEEEe----CccEe-ccccCeECCCCCCCCC
Confidence 34456678999999998643211000 00011 3345778899888753
No 66
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=50.29 E-value=5.5 Score=19.79 Aligned_cols=14 Identities=36% Similarity=0.930 Sum_probs=11.1
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 5 ~kp~~C~~C~k~F~ 18 (48)
T 3iuf_A 5 DKPYACDICGKRYK 18 (48)
T ss_dssp TSCEECTTTCCEES
T ss_pred CcCEECCCcCcccC
Confidence 46799999998754
No 67
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.05 E-value=3.8 Score=18.53 Aligned_cols=14 Identities=14% Similarity=0.828 Sum_probs=10.7
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (37)
T 2elo_A 7 GRSYSCPVCEKSFS 20 (37)
T ss_dssp CCCCEETTTTEECS
T ss_pred CCCcCCCCCCCccC
Confidence 46788999988754
No 68
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.00 E-value=5.7 Score=18.95 Aligned_cols=14 Identities=14% Similarity=0.864 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2emi_A 10 ERHYECSECGKAFI 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCCCCCCCCcccC
Confidence 56789999998754
No 69
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.96 E-value=5.5 Score=18.93 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=11.0
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytf_A 10 EKPFECSECQKAFN 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCcCCCCCCcccC
Confidence 56799999998754
No 70
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=49.70 E-value=2 Score=25.84 Aligned_cols=25 Identities=32% Similarity=0.820 Sum_probs=16.1
Q ss_pred cCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccc
Q 035287 22 ACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSR 61 (68)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r 61 (68)
.|.||||.+.. ..+|-...|..|.+
T Consensus 35 ~CaRCGg~v~l---------------r~~k~~WvC~lC~k 59 (62)
T 2a20_A 35 FCARCGGRVSL---------------RSNKVMWVCNLCRK 59 (62)
T ss_dssp ECTTSEEEEES---------------STTCEEEEEHHHHH
T ss_pred eecccCCEeee---------------cCCeEEEEehhhhh
Confidence 48888887654 34566666666654
No 71
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.68 E-value=5.4 Score=19.02 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=11.5
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2enc_A 9 GEKPFKCEECGKGFY 23 (46)
T ss_dssp CCCSEECSSSCCEES
T ss_pred CCCCcCCCCCCCcCC
Confidence 356799999998764
No 72
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.67 E-value=5.7 Score=18.93 Aligned_cols=15 Identities=20% Similarity=0.687 Sum_probs=11.4
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2em7_A 9 GEKPYKCEECGKGFI 23 (46)
T ss_dssp CCCSEECSSSCCEES
T ss_pred CCcCccCCCccchhC
Confidence 356799999998754
No 73
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.65 E-value=5.6 Score=18.90 Aligned_cols=15 Identities=20% Similarity=0.749 Sum_probs=11.4
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2yts_A 9 GEKPYICNECGKSFI 23 (46)
T ss_dssp SCCSEECSSSCCEES
T ss_pred CCcCEECCCCChhhC
Confidence 356799999998754
No 74
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=49.37 E-value=16 Score=22.34 Aligned_cols=37 Identities=19% Similarity=0.529 Sum_probs=25.3
Q ss_pred CCCCcCCCCCCc-eEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 18 GADAACPYCGGP-VLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 18 ~A~G~Cp~CGG~-v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
+.-=.||.||.. .+.+.++-.. ..-...|..|+....
T Consensus 21 ~t~F~CPfCnh~~sV~vkidk~~----------~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 21 ETQFTCPFCNHEKSCDVKMDRAR----------NTGVISCTVCLEEFQ 58 (85)
T ss_dssp SSCCCCTTTCCSSCEEEEEETTT----------TEEEEEESSSCCEEE
T ss_pred CCeEcCCCCCCCCeEEEEEEccC----------CEEEEEcccCCCeEE
Confidence 345679999998 6666664331 235678999997764
No 75
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.35 E-value=5.5 Score=18.66 Aligned_cols=14 Identities=21% Similarity=0.693 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2eof_A 10 EKPYECNECQKAFN 23 (44)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCeECCCCCcccC
Confidence 56789999988754
No 76
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.33 E-value=5.6 Score=19.04 Aligned_cols=15 Identities=27% Similarity=0.848 Sum_probs=11.4
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..++|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2eoz_A 9 GEKPYSCNVCGKAFV 23 (46)
T ss_dssp SCCSEEETTTTEEES
T ss_pred CCCCeECcccChhhC
Confidence 356799999998754
No 77
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.26 E-value=5.6 Score=18.90 Aligned_cols=14 Identities=21% Similarity=0.717 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eow_A 10 EKPYKCNECGKAFR 23 (46)
T ss_dssp CCCEECTTSCCEES
T ss_pred CCCeeccccCChhc
Confidence 56789999988754
No 78
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.97 E-value=5.8 Score=18.84 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=11.4
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~F~ 23 (46)
T 2epw_A 9 GEKPCKCTECGKAFC 23 (46)
T ss_dssp CCCSEECSSSCCEES
T ss_pred CCCCeeCCCCCCccC
Confidence 356789999998754
No 79
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.94 E-value=6 Score=18.92 Aligned_cols=14 Identities=14% Similarity=0.793 Sum_probs=11.0
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2ytp_A 10 ERHYECSECGKAFA 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCcCCcccC
Confidence 56799999998754
No 80
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.70 E-value=6 Score=18.94 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=11.3
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2eoy_A 9 KEKCFKCNKCEKTFS 23 (46)
T ss_dssp CSCCEECSSSCCEES
T ss_pred CCCCEECcCCCCcCC
Confidence 346789999998754
No 81
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.52 E-value=5.9 Score=18.87 Aligned_cols=14 Identities=21% Similarity=0.887 Sum_probs=11.0
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eml_A 10 EKPYECSVCGKAFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCCCcCCccC
Confidence 56789999998764
No 82
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.50 E-value=5.5 Score=18.56 Aligned_cols=14 Identities=36% Similarity=0.928 Sum_probs=10.6
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2en2_A 9 EKPYKCETCGARFV 22 (42)
T ss_dssp SCSEECTTTCCEES
T ss_pred CCCEeCCCcChhhC
Confidence 46788999988754
No 83
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.46 E-value=6.2 Score=18.88 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=11.4
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2yto_A 9 GEKPYKCSDCGKAFT 23 (46)
T ss_dssp SCCCEECSSSCCEES
T ss_pred CCCCEECcccCCccC
Confidence 356799999998754
No 84
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.35 E-value=5.9 Score=18.90 Aligned_cols=14 Identities=21% Similarity=0.800 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytj_A 10 EKPYICAECGKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCChhhC
Confidence 46789999998764
No 85
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.33 E-value=6.1 Score=18.91 Aligned_cols=14 Identities=14% Similarity=0.650 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2eoo_A 10 ERPYGCNECGKNFG 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCEEccccCcccC
Confidence 46789999998764
No 86
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.26 E-value=5.6 Score=18.88 Aligned_cols=14 Identities=21% Similarity=0.840 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2eor_A 10 EKPYNCEECGKAFI 23 (46)
T ss_dssp CCSEECTTTCCEES
T ss_pred CcCccCCCCCCCcC
Confidence 56789999988754
No 87
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.17 E-value=5.9 Score=18.80 Aligned_cols=14 Identities=21% Similarity=0.745 Sum_probs=10.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eme_A 10 EKPYVCDYCGKAFG 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCChhhC
Confidence 46789999988754
No 88
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.00 E-value=6.1 Score=18.82 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=11.6
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~F~ 23 (45)
T 2epu_A 9 GQKPFECTHCGKSFR 23 (45)
T ss_dssp SCCSEEETTTTEEES
T ss_pred CCcCccCCCCCCccC
Confidence 356799999998754
No 89
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.93 E-value=6.1 Score=18.83 Aligned_cols=15 Identities=20% Similarity=0.565 Sum_probs=11.4
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|+.|++...
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2ene_A 9 GEKPYKCNECGKVFR 23 (46)
T ss_dssp CSSSEECSSSCCEES
T ss_pred CCCCeECCCCCchhC
Confidence 356799999998754
No 90
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=47.92 E-value=2.5 Score=23.78 Aligned_cols=22 Identities=41% Similarity=0.872 Sum_probs=14.3
Q ss_pred CcCCCCCCceEEEEecceeeeE
Q 035287 21 AACPYCGGPVLAIDFDAHLRFC 42 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfC 42 (68)
-.|++||..+...-....-|||
T Consensus 19 ~~C~~CG~~i~~~~~~r~krFC 40 (49)
T 2l8e_A 19 LKCEYCGKYAPAEQFRGSKRFC 40 (49)
T ss_dssp EECTTTCCEEEGGGCTTTSSSC
T ss_pred CcChhccCccccccCCCCCccC
Confidence 3699999987654444444555
No 91
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.83 E-value=6 Score=18.85 Aligned_cols=14 Identities=21% Similarity=0.664 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2eq0_A 10 EKPYKCHECGKVFR 23 (46)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCeECCCCCchhC
Confidence 56789999988754
No 92
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.83 E-value=6.7 Score=18.74 Aligned_cols=14 Identities=14% Similarity=0.679 Sum_probs=11.1
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em4_A 10 QRPYECIECGKAFK 23 (46)
T ss_dssp SSSEECSSSCCEES
T ss_pred CcCcCCCCCCCccC
Confidence 56799999998764
No 93
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=47.82 E-value=2.9 Score=23.15 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=7.6
Q ss_pred eEEeecccceee
Q 035287 53 KFYCTICSRRLV 64 (68)
Q Consensus 53 k~~Ct~C~r~L~ 64 (68)
=|.|+.|++.|.
T Consensus 27 CF~C~~C~~~L~ 38 (76)
T 1iml_A 27 CLKCEKCGKTLT 38 (76)
T ss_dssp TCBCTTTCCBCC
T ss_pred CCCccccCccCC
Confidence 356777776664
No 94
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.76 E-value=2.8 Score=18.80 Aligned_cols=14 Identities=21% Similarity=0.802 Sum_probs=9.7
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 7 ~~~~~C~~C~k~f~ 20 (36)
T 2elr_A 7 GKTHLCDMCGKKFK 20 (36)
T ss_dssp CSSCBCTTTCCBCS
T ss_pred CCCeecCcCCCCcC
Confidence 45677888887653
No 95
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.57 E-value=6.3 Score=18.86 Aligned_cols=15 Identities=20% Similarity=0.538 Sum_probs=11.4
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2em8_A 9 GEKPYKCVECGKGYK 23 (46)
T ss_dssp SCCSEECSSSCCEES
T ss_pred CCCCeECcccCchhC
Confidence 356789999998764
No 96
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.52 E-value=6.4 Score=18.57 Aligned_cols=14 Identities=21% Similarity=0.771 Sum_probs=11.0
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (44)
T 2eox_A 10 SKSYNCNECGKAFT 23 (44)
T ss_dssp CCCEEETTTTEEES
T ss_pred CCCeECcccCcccC
Confidence 46799999998764
No 97
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=47.51 E-value=6.1 Score=18.90 Aligned_cols=14 Identities=29% Similarity=0.783 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emj_A 10 EKPFECAECGKSFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCEECCCCCcccC
Confidence 56789999998754
No 98
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.41 E-value=6.4 Score=18.74 Aligned_cols=14 Identities=14% Similarity=0.650 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emy_A 10 ENPYECHECGKAFS 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CcCcCCCCCCcccC
Confidence 46789999988754
No 99
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.35 E-value=6.4 Score=18.76 Aligned_cols=14 Identities=21% Similarity=0.774 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ep3_A 10 EKPYRCAECGKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 46789999998754
No 100
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.32 E-value=6.5 Score=18.54 Aligned_cols=14 Identities=29% Similarity=0.797 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (44)
T 2emx_A 8 EKPFGCSCCEKAFS 21 (44)
T ss_dssp CCCEECSSSSCEES
T ss_pred CcCccCCCCCcccC
Confidence 46789999988754
No 101
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=47.28 E-value=12 Score=23.61 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=9.5
Q ss_pred cCCCCCCceEEEE
Q 035287 22 ACPYCGGPVLAID 34 (68)
Q Consensus 22 ~Cp~CGG~v~a~D 34 (68)
-||.||..+....
T Consensus 5 ~C~~CG~~~~~~~ 17 (189)
T 3cng_A 5 FCSQCGGEVILRI 17 (189)
T ss_dssp BCTTTCCBCEEEC
T ss_pred cCchhCCcccccc
Confidence 5888888887543
No 102
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=47.26 E-value=2.5 Score=18.01 Aligned_cols=11 Identities=27% Similarity=1.035 Sum_probs=7.2
Q ss_pred eEEeeccccee
Q 035287 53 KFYCTICSRRL 63 (68)
Q Consensus 53 k~~Ct~C~r~L 63 (68)
.|.|..|++..
T Consensus 2 ~~~C~~C~k~f 12 (30)
T 1paa_A 2 AYACGLCNRAF 12 (30)
T ss_dssp CSBCTTTCCBC
T ss_pred CcCCcccCccc
Confidence 46677777654
No 103
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.23 E-value=6.6 Score=18.70 Aligned_cols=15 Identities=20% Similarity=0.538 Sum_probs=11.5
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2ysp_A 9 GEKPYKCEKCGKGYN 23 (46)
T ss_dssp SCCSEEETTTTEEES
T ss_pred CCCCeECCCCCCccC
Confidence 356799999998754
No 104
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.97 E-value=6.5 Score=18.80 Aligned_cols=15 Identities=27% Similarity=0.629 Sum_probs=11.4
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2em2_A 9 GEKPFKCKECGKAFR 23 (46)
T ss_dssp CCCSEECSSSCCEES
T ss_pred CCCCEECCcCCchhC
Confidence 356799999998754
No 105
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.69 E-value=6.8 Score=18.64 Aligned_cols=14 Identities=21% Similarity=0.717 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emp_A 10 VKPYMCNECGKAFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCchhC
Confidence 56789999988754
No 106
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.65 E-value=6.9 Score=18.54 Aligned_cols=14 Identities=21% Similarity=0.736 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2yrj_A 10 EKPYRCGECGKAFA 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCccC
Confidence 56789999988754
No 107
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.48 E-value=6.5 Score=18.80 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=11.0
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2em5_A 10 TKSHQCHECGRGFT 23 (46)
T ss_dssp SCSEECSSSCCEES
T ss_pred CCCeECCcCCCccC
Confidence 56789999998764
No 108
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=46.41 E-value=6 Score=22.65 Aligned_cols=12 Identities=42% Similarity=1.262 Sum_probs=8.8
Q ss_pred CC-cCCCCCCceE
Q 035287 20 DA-ACPYCGGPVL 31 (68)
Q Consensus 20 ~G-~Cp~CGG~v~ 31 (68)
|| -|||||=.|.
T Consensus 22 P~IrCpyCGyrii 34 (48)
T 4ayb_P 22 PGVRCPYCGYKII 34 (48)
T ss_dssp SSSCCTTTCCSCE
T ss_pred CCcccCccCcEEE
Confidence 44 5999997664
No 109
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.38 E-value=6.7 Score=18.59 Aligned_cols=14 Identities=14% Similarity=0.712 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emm_A 10 ERPHKCNECGKSFI 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCCCCChhhC
Confidence 56789999988754
No 110
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=46.36 E-value=6.6 Score=18.63 Aligned_cols=14 Identities=21% Similarity=0.695 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2el4_A 10 VKPYGCSQCAKTFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCceECCCCCchhC
Confidence 56789999988754
No 111
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.31 E-value=6.7 Score=18.66 Aligned_cols=14 Identities=29% Similarity=0.702 Sum_probs=11.0
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2en3_A 10 EKPFQCKECGMNFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCcccChhhC
Confidence 56799999998764
No 112
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.28 E-value=6.2 Score=18.81 Aligned_cols=14 Identities=21% Similarity=0.970 Sum_probs=10.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emh_A 10 ERPYICTVCGKAFT 23 (46)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCcCCCCCCchhC
Confidence 46789999988754
No 113
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.20 E-value=6.8 Score=18.65 Aligned_cols=14 Identities=29% Similarity=0.942 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ep2_A 10 EKPYECSICGKSFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCcCCCCCCcccC
Confidence 56789999988754
No 114
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.16 E-value=6.4 Score=18.76 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=11.3
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~~~~~C~~C~k~f~ 23 (46)
T 2ytg_A 9 GEKPFKCGECGKSYN 23 (46)
T ss_dssp SCCSEECTTTCCEES
T ss_pred CCCCeECCCCCcccC
Confidence 356789999988754
No 115
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=46.15 E-value=8.4 Score=21.88 Aligned_cols=9 Identities=44% Similarity=1.136 Sum_probs=7.5
Q ss_pred cCCCCCCce
Q 035287 22 ACPYCGGPV 30 (68)
Q Consensus 22 ~Cp~CGG~v 30 (68)
.||-||.+-
T Consensus 38 ~CP~Cg~~K 46 (54)
T 4rxn_A 38 VCPLCGVGK 46 (54)
T ss_dssp BCTTTCCBG
T ss_pred cCcCCCCcH
Confidence 899999863
No 116
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=46.13 E-value=6.6 Score=18.77 Aligned_cols=14 Identities=14% Similarity=0.662 Sum_probs=11.0
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2el6_A 10 VNPYKCSQCEKSFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCeECCCCCcccC
Confidence 46799999998764
No 117
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.12 E-value=3.6 Score=23.31 Aligned_cols=42 Identities=17% Similarity=0.345 Sum_probs=25.9
Q ss_pred eeecCCCCcCCCCCCceEEEEecceeeeEEeeeeeee--cceEEeecccceee
Q 035287 14 IRRNGADAACPYCGGPVLAIDFDAHLRFCFLPISHKV--KKKFYCTICSRRLV 64 (68)
Q Consensus 14 ~~~~~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~--krk~~Ct~C~r~L~ 64 (68)
.........|+.||..|...-|+ .--+. ..=|.|+.|++.|.
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~~v~---------a~~~~~H~~CF~C~~C~~~L~ 52 (79)
T 2cor_A 9 KARGLGKYICQKCHAIIDEQPLI---------FKNDPYHPDHFNCANCGKELT 52 (79)
T ss_dssp CCCCCCCCBCTTTCCBCCSCCCC---------CSSSCCCTTTSBCSSSCCBCC
T ss_pred hhhccCCCCCccCCCEecceEEE---------ECcceeCCCCCEeCCCCCccC
Confidence 34455567899999998821111 11222 23478889988875
No 118
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.04 E-value=7.8 Score=17.96 Aligned_cols=14 Identities=14% Similarity=0.669 Sum_probs=10.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (41)
T 2ept_A 8 QRVYECQECGKSFR 21 (41)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCCcC
Confidence 46789999988754
No 119
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=45.90 E-value=10 Score=19.25 Aligned_cols=13 Identities=31% Similarity=0.930 Sum_probs=6.5
Q ss_pred cceEEeeccccee
Q 035287 51 KKKFYCTICSRRL 63 (68)
Q Consensus 51 krk~~Ct~C~r~L 63 (68)
.+.|.|..|++..
T Consensus 8 ~k~~~C~~C~k~f 20 (66)
T 2drp_A 8 EHTYRCKVCSRVY 20 (66)
T ss_dssp TTEEECTTTCCEE
T ss_pred CcceECCCCcchh
Confidence 3445555555543
No 120
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=45.83 E-value=7.2 Score=18.55 Aligned_cols=14 Identities=21% Similarity=0.786 Sum_probs=10.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ema_A 10 EKRYKCNECGKVFS 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CcCcCCCCCcchhC
Confidence 46789999988754
No 121
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=45.74 E-value=6.8 Score=18.57 Aligned_cols=14 Identities=21% Similarity=0.733 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.++|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em9_A 10 EKPYNCKECGKSFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCccccccC
Confidence 56789999988754
No 122
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=45.51 E-value=6.9 Score=22.04 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=18.8
Q ss_pred CcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 21 AACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
-.||.||+.-.+.|-++. -.+|+.||..|.
T Consensus 12 ~~Cp~C~~~~lv~D~~~g--------------e~vC~~CGlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAG--------------DMICPECGLVVG 41 (58)
T ss_dssp CSBTTBSSSCCEECSSSC--------------CEECTTTCCEEC
T ss_pred ccCcCCCCCceeEeCCCC--------------eEEeCCCCCEEe
Confidence 369999984445554433 356777776653
No 123
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.37 E-value=7.5 Score=18.57 Aligned_cols=14 Identities=36% Similarity=0.816 Sum_probs=10.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emf_A 10 GKHFECTECGKAFT 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 46789999988754
No 124
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.33 E-value=6.9 Score=18.62 Aligned_cols=15 Identities=20% Similarity=0.609 Sum_probs=11.4
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|+.|++...
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2yu8_A 9 GEKPYKCNECGKVFT 23 (46)
T ss_dssp CCSSEECSSSCCEES
T ss_pred CCCCeECCcCCchhC
Confidence 356799999998754
No 125
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.07 E-value=7.5 Score=18.49 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=11.5
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~~~~~C~~C~k~f~ 23 (46)
T 2en6_A 9 GEKPYGCNECGKTFS 23 (46)
T ss_dssp SSCCEEETTTTEEES
T ss_pred CCcCeECCCCCcccC
Confidence 356799999998754
No 126
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.05 E-value=7.3 Score=18.54 Aligned_cols=14 Identities=29% Similarity=0.921 Sum_probs=10.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2em3_A 10 EKPYECKVCSKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCcccC
Confidence 56789999988754
No 127
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=44.68 E-value=2.5 Score=23.02 Aligned_cols=40 Identities=20% Similarity=0.432 Sum_probs=21.2
Q ss_pred CcCCCCCCceEEEEecceeeeEEeeeee-eecceEEeecccceee
Q 035287 21 AACPYCGGPVLAIDFDAHLRFCFLPISH-KVKKKFYCTICSRRLV 64 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~-k~krk~~Ct~C~r~L~ 64 (68)
..|+.||.+|...|-. .+ .+--.| .+..=|.|+.|++.|.
T Consensus 3 ~~C~~C~~~I~~~~~~--v~--a~~~~wH~~~~CF~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQR--VT--YNNFSWHASTECFLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCE--EE--ETTEEEETTTTTSBCTTTCCBCT
T ss_pred CCCcCCCCeeccCceE--EE--ECCCccCCCCCCEECCCCCCcCC
Confidence 4689999888743210 00 011111 1134477888888874
No 128
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=44.44 E-value=3.8 Score=18.60 Aligned_cols=13 Identities=38% Similarity=0.966 Sum_probs=8.8
Q ss_pred ceEEeecccceee
Q 035287 52 KKFYCTICSRRLV 64 (68)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (68)
+.|.|..|++...
T Consensus 1 kp~~C~~C~k~F~ 13 (33)
T 1rim_A 1 YKFACPECPKRFM 13 (33)
T ss_dssp CCCCCSSSCCCCS
T ss_pred CcccCCCCCchhC
Confidence 3577888887643
No 129
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=44.36 E-value=14 Score=25.78 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=10.8
Q ss_pred CCcCCCCCCceEEE
Q 035287 20 DAACPYCGGPVLAI 33 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~ 33 (68)
..-||.||.+....
T Consensus 107 ~~fC~~CG~~~~~~ 120 (269)
T 1vk6_A 107 HKYCGYCGHEMYPS 120 (269)
T ss_dssp TSBCTTTCCBEEEC
T ss_pred CCccccCCCcCccC
Confidence 45799999988653
No 130
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.27 E-value=7.6 Score=18.47 Aligned_cols=14 Identities=21% Similarity=0.740 Sum_probs=10.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytd_A 10 EKPYKCSECGKAFH 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCCeeC
Confidence 56789999988754
No 131
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.06 E-value=2.4 Score=24.21 Aligned_cols=40 Identities=25% Similarity=0.585 Sum_probs=24.1
Q ss_pred CCCCcCCCCCCceEEEEecceeeeEEeeeeeee--cceEEeecccceeee
Q 035287 18 GADAACPYCGGPVLAIDFDAHLRFCFLPISHKV--KKKFYCTICSRRLVP 65 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~--krk~~Ct~C~r~L~~ 65 (68)
.....|+.||-.|...++-.. --+. +.=|.|+.|++.|..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a--------~~~~wH~~CF~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV--------NGHFFHRSCFRCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB--------TTBCCBTTTCBCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccceEEEE--------CCCeeCCCcCEEcCCCCCcCC
Confidence 345679999998864332111 1122 344778888888754
No 132
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.92 E-value=5.3 Score=22.22 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCcCCCCCCceEEEEe--cceeeeEEeeeeeeecceEEeecccceee
Q 035287 20 DAACPYCGGPVLAIDF--DAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~Dv--es~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
...|+.||-.|...|. +.. --.| +..=|.|+.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~------~~~~-H~~CF~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYK------GTVW-HKDCFTCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECS------SCEE-ETTTCCCSSSCCCCT
T ss_pred CCcCccCCcccccCceEEEEC------cccc-ccccCchhhCCCccC
Confidence 4689999999875442 211 1111 345577888888875
No 133
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.88 E-value=4.7 Score=19.00 Aligned_cols=14 Identities=14% Similarity=0.612 Sum_probs=10.5
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2eoj_A 10 ENPYECCECGKVFS 23 (44)
T ss_dssp CCSCEETTTTEECS
T ss_pred CcCeeCCCCCCccC
Confidence 46788999987654
No 134
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.85 E-value=7.4 Score=18.51 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=10.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2yso_A 10 EKSHQCRECGEIFF 23 (46)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCEEccccChhhC
Confidence 46788999988764
No 135
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=43.84 E-value=9.1 Score=15.83 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=9.6
Q ss_pred ceEEee--cccceee
Q 035287 52 KKFYCT--ICSRRLV 64 (68)
Q Consensus 52 rk~~Ct--~C~r~L~ 64 (68)
+.|.|. .|++...
T Consensus 1 k~~~C~~~~C~k~f~ 15 (29)
T 2ab3_A 1 MVYVCHFENCGRSFN 15 (29)
T ss_dssp CCEEECSTTTCEEES
T ss_pred CCCCCcCCcCcCccC
Confidence 357899 9988654
No 136
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=43.60 E-value=8.1 Score=18.76 Aligned_cols=16 Identities=25% Similarity=0.742 Sum_probs=11.7
Q ss_pred eecceEEeecccceee
Q 035287 49 KVKKKFYCTICSRRLV 64 (68)
Q Consensus 49 k~krk~~Ct~C~r~L~ 64 (68)
...+.|.|..|++.+.
T Consensus 8 ~~~k~~~C~~C~k~f~ 23 (48)
T 2epr_A 8 RTRKQVACEICGKIFR 23 (48)
T ss_dssp CCCCSEEETTTTEEES
T ss_pred CCCcCeeCCCCCcccC
Confidence 3457788988888764
No 137
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.49 E-value=7.7 Score=18.44 Aligned_cols=14 Identities=36% Similarity=0.921 Sum_probs=11.0
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2en1_A 10 EKPFKCEECGKRFT 23 (46)
T ss_dssp CCSEEETTTTEEES
T ss_pred CCCeeCCCCCcccC
Confidence 56799999998754
No 138
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=43.38 E-value=3.7 Score=18.57 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=8.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 9 ~k~~~C~~C~k~f~ 22 (37)
T 1p7a_A 9 IKPFQCPDCDRSFS 22 (37)
T ss_dssp SSSBCCTTTCCCBS
T ss_pred CCCccCCCCCcccC
Confidence 35677777776543
No 139
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=43.17 E-value=5.7 Score=24.60 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=9.9
Q ss_pred CCCCcCCCCCCceE
Q 035287 18 GADAACPYCGGPVL 31 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~ 31 (68)
+-+..|||||-...
T Consensus 51 ~g~~~CpYCg~~f~ 64 (80)
T 2jvm_A 51 TGFVECGYCDRRYI 64 (80)
T ss_dssp TCEEECSSSSCEEE
T ss_pred CCeEECCCCCCEEE
Confidence 45668999996543
No 140
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.15 E-value=7.5 Score=18.40 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=11.2
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~~~~~C~~C~k~f~ 23 (46)
T 2en8_A 9 GEKSHTCDECGKNFC 23 (46)
T ss_dssp CCSSEECTTTCCEES
T ss_pred CCCCeECCCcCcccC
Confidence 356789999988754
No 141
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=43.07 E-value=4.1 Score=20.19 Aligned_cols=15 Identities=27% Similarity=0.720 Sum_probs=11.9
Q ss_pred CCcCCCCCCceEEEE
Q 035287 20 DAACPYCGGPVLAID 34 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~D 34 (68)
+..||.||-.|.+++
T Consensus 3 ~~~C~~C~k~Vy~~E 17 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE 17 (31)
T ss_dssp CCBCSSSCSBCCGGG
T ss_pred CCcCCccCCEEecce
Confidence 458999999987663
No 142
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.77 E-value=8.1 Score=18.36 Aligned_cols=14 Identities=21% Similarity=0.731 Sum_probs=10.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2ytk_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp SCSEECSSSCCEES
T ss_pred CCCEeCCcCCCccC
Confidence 56789999988754
No 143
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=42.35 E-value=8.1 Score=21.18 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=23.4
Q ss_pred CCcCCCCCCceEE----EEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 20 DAACPYCGGPVLA----IDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 20 ~G~Cp~CGG~v~a----~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
...|+.||-+|.. ..+-. .+--.| +..=|.|+.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~-----a~~~~~-H~~CF~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVA-----YEGQSW-HDYCFHCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEE-----ETTEEE-ETTTCBCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCceeEE-----ECccee-CcccCEehhcCCCCC
Confidence 4689999998873 11111 111122 335578999999885
No 144
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=42.24 E-value=3.1 Score=22.39 Aligned_cols=40 Identities=15% Similarity=0.349 Sum_probs=22.7
Q ss_pred CCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceeee
Q 035287 19 ADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLVP 65 (68)
Q Consensus 19 A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (68)
....|+.||.+|. .++-.. +--.| +..=|.|+.|++.|..
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a-----~~~~~-H~~CF~C~~C~~~L~~ 43 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNA-----MGKQW-HVEHFVCAKCEKPFLG 43 (66)
T ss_dssp CCCEETTTTEECC-SCEECC-----TTSBE-ETTTCBCTTTCCBCSS
T ss_pred CCCCCcccCCEec-ceEEEE-----Ccccc-ccCcCEECCCCCCCCC
Confidence 3567999998887 221110 11111 2344778899888753
No 145
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=41.87 E-value=10 Score=22.26 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=7.8
Q ss_pred cCCCCcCCCCCCce
Q 035287 17 NGADAACPYCGGPV 30 (68)
Q Consensus 17 ~~A~G~Cp~CGG~v 30 (68)
++..-.|..||..+
T Consensus 18 ~~v~Y~C~~Cg~~~ 31 (63)
T 3h0g_L 18 ATMIYLCADCGARN 31 (63)
T ss_dssp -CCCCBCSSSCCBC
T ss_pred CCeEEECCCCCCee
Confidence 34555666776554
No 146
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.75 E-value=3.9 Score=22.17 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=22.9
Q ss_pred CCcCCCCCCceEEEE-ecceeeeEEeeeeeeecceEEeecccceeee
Q 035287 20 DAACPYCGGPVLAID-FDAHLRFCFLPISHKVKKKFYCTICSRRLVP 65 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~D-ves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (68)
...|+.||.+|...| +-.. +--.| +..=|.|+.|++.|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a-----~~~~~-H~~CF~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY-----KGSSW-HETCFICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE-----TTEEE-ETTTTCCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEE-----CcCee-cccCCcccccCCccCC
Confidence 358999999887543 1110 11111 2345678888887753
No 147
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=41.50 E-value=3.1 Score=25.11 Aligned_cols=38 Identities=16% Similarity=0.380 Sum_probs=22.8
Q ss_pred CcCCCCCCceEEEE-ecceeeeEEeeeeeeecceEEeecccceee
Q 035287 21 AACPYCGGPVLAID-FDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 21 G~Cp~CGG~v~a~D-ves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
+.|..|+.++...| +-....--| +..=|.|+.|++.|.
T Consensus 67 ~~C~~C~~~I~~~e~~~~a~~~~~------H~~CF~C~~C~~~L~ 105 (131)
T 2xjy_A 67 GLCASCDKRIRAYEMTMRVKDKVY------HLECFKCAACQKHFC 105 (131)
T ss_dssp EECTTTCCEECTTSEEEEETTEEE------EGGGCBCTTTCCBCC
T ss_pred cChhhcCCccCccceeEeeCCceE------CccCcccCCCCCCCC
Confidence 48999999996533 111111111 234578999999883
No 148
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=40.91 E-value=4.7 Score=16.71 Aligned_cols=11 Identities=36% Similarity=1.144 Sum_probs=7.1
Q ss_pred EEeecccceee
Q 035287 54 FYCTICSRRLV 64 (68)
Q Consensus 54 ~~Ct~C~r~L~ 64 (68)
|.|..|++...
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 56777776543
No 149
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=40.55 E-value=5.4 Score=23.81 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=9.3
Q ss_pred CCCCcCCCCCCce
Q 035287 18 GADAACPYCGGPV 30 (68)
Q Consensus 18 ~A~G~Cp~CGG~v 30 (68)
+-+..|||||-..
T Consensus 38 ~g~~~CpYCg~~f 50 (67)
T 2jrr_A 38 TGWVECPYCDCKY 50 (67)
T ss_dssp TSEEEETTTTEEE
T ss_pred CCeEECCCCCCEE
Confidence 4566899998544
No 150
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=40.44 E-value=2.8 Score=23.40 Aligned_cols=40 Identities=28% Similarity=0.577 Sum_probs=29.6
Q ss_pred cCCCCcCC-CCCCceEEEEecceee-eEEeeeeeeecceEEeeccccee
Q 035287 17 NGADAACP-YCGGPVLAIDFDAHLR-FCFLPISHKVKKKFYCTICSRRL 63 (68)
Q Consensus 17 ~~A~G~Cp-~CGG~v~a~Dves~~r-fCflP~~~k~krk~~Ct~C~r~L 63 (68)
.-++-.|| .||..+.-.|++.+.. -| .+|...|.+|+..+
T Consensus 13 ~~~~v~C~~~C~~~v~r~~l~~H~~~~C-------~~r~v~C~~C~~~~ 54 (76)
T 2yuc_A 13 SFNVIPCPNRCPMKLSRRDLPAHLQHDC-------PKRRLKCEFCGCDF 54 (76)
T ss_dssp CCSCCBCTTCCSCBCCSSSSTTTTTTSC-------TTSCCCCSSSCCCC
T ss_pred CCcccCCCccccHHhhHhHHHhhCHhhC-------CCcceECCCCCCcc
Confidence 34567785 7999999999998876 45 35778888887654
No 151
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.42 E-value=5 Score=18.79 Aligned_cols=14 Identities=36% Similarity=0.895 Sum_probs=9.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2eos_A 9 EKPYPCEICGTRFR 22 (42)
T ss_dssp SCCBCCSSSCCCBS
T ss_pred CCCEECCCCCCccC
Confidence 45678888887654
No 152
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.37 E-value=9.2 Score=18.13 Aligned_cols=14 Identities=21% Similarity=0.838 Sum_probs=10.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2ep0_A 10 EKPYKCDVCHKSFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCcccCcccC
Confidence 46789999988754
No 153
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.23 E-value=4 Score=22.91 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=24.4
Q ss_pred ecCCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 16 RNGADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 16 ~~~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
+.+....|+.|+-.|...-|+. +--.| +..=|.|+.|++.|.
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~~a------~~~~~-H~~CF~C~~C~~~L~ 52 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVGVFVKL------RDRHR-HPECYVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCCCSSSCCCCCSSCEEC------SSCEE-CTTTTSCSSSCCCHH
T ss_pred CCCCCCccccCCCCccCcEEEE------Cccee-CcCcCeeCCCCCCCC
Confidence 3455678999999887421111 11111 233467888988875
No 154
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.20 E-value=6.3 Score=22.43 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=23.6
Q ss_pred CCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 19 ADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 19 A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
.+..|+.||..|...++-. .+--.| +..=|.|+.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~-----a~~~~w-H~~CF~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLL-----ALDKQW-HVSCFKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEE-----ETTEEE-CTTTCBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEE-----ECCccc-ccccCCcCcCCCCcC
Confidence 3557999999886433211 111111 334578888888874
No 155
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.16 E-value=17 Score=18.37 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=11.8
Q ss_pred ecceEEeecccceeee
Q 035287 50 VKKKFYCTICSRRLVP 65 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~~ 65 (68)
..+.|.|+.|++....
T Consensus 15 ~~~~~~C~~C~k~f~~ 30 (73)
T 2ctu_A 15 GDRSQKCSKCGIIFIR 30 (73)
T ss_dssp CCSEEECSSSCCEEEC
T ss_pred CCCCeeCCcccchhCC
Confidence 3467889999887654
No 156
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=39.13 E-value=9.5 Score=19.03 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=10.6
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 22 ~k~~~C~~C~k~f~ 35 (54)
T 1yui_A 22 EQPATCPICYAVIR 35 (54)
T ss_dssp SCCEECTTTCCEES
T ss_pred CCCccCCCCCcccC
Confidence 46788999988754
No 157
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=39.01 E-value=7.2 Score=19.58 Aligned_cols=14 Identities=21% Similarity=0.619 Sum_probs=11.1
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.++|.|+.||+...
T Consensus 6 ekp~~C~~CgK~F~ 19 (36)
T 1fv5_A 6 PARFMCLPCGIAFS 19 (36)
T ss_dssp CCCCEETTTTEECS
T ss_pred ccCeECCCCCCccC
Confidence 46899999998754
No 158
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.95 E-value=4.6 Score=18.74 Aligned_cols=14 Identities=21% Similarity=0.695 Sum_probs=9.3
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|+.|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (42)
T 2yte_A 8 EKPYSCAECKETFS 21 (42)
T ss_dssp CCSCBCTTTCCBCS
T ss_pred CCCeECCCCCCccC
Confidence 45677888877543
No 159
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.82 E-value=7.1 Score=21.04 Aligned_cols=38 Identities=24% Similarity=0.509 Sum_probs=22.9
Q ss_pred CCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 20 DAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
...|+.|+-+|.+-.|+.. --.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~------~~~~-H~~CF~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYR------EQPW-HKECFVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSSEEESS------SSEE-ETTTSBCSSSCCBCT
T ss_pred CCCCcccCCeeccceEEEC------cccc-CCCCCccCCCCCcCC
Confidence 4579999998864322211 1111 234477899988874
No 160
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=38.76 E-value=11 Score=31.17 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=10.3
Q ss_pred CCcCCCCCCceEE
Q 035287 20 DAACPYCGGPVLA 32 (68)
Q Consensus 20 ~G~Cp~CGG~v~a 32 (68)
.+.||+|||.++.
T Consensus 8 ~~~C~~Cg~~~~~ 20 (1104)
T 4ddu_A 8 HHSCINCGGLNTD 20 (1104)
T ss_dssp TTCCTTTSSCEEH
T ss_pred hhcCCCCcCcCch
Confidence 3699999997663
No 161
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.47 E-value=15 Score=18.95 Aligned_cols=12 Identities=25% Similarity=0.791 Sum_probs=6.8
Q ss_pred ceEEeeccccee
Q 035287 52 KKFYCTICSRRL 63 (68)
Q Consensus 52 rk~~Ct~C~r~L 63 (68)
|.|.|..|++..
T Consensus 9 ~~~~C~~C~k~f 20 (66)
T 2eod_A 9 RTQPCTYCTKEF 20 (66)
T ss_dssp CEEECSSSCCEE
T ss_pred CCeeccccCCcc
Confidence 456666666544
No 162
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=38.15 E-value=10 Score=24.24 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=18.3
Q ss_pred CCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeeccc
Q 035287 18 GADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICS 60 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~ 60 (68)
+.--.||+||-.+- +..+..|..||
T Consensus 14 KtH~lCrRCG~~sf------------------H~qK~~CgkCG 38 (97)
T 2zkr_2 14 KTHTLCRRCGSKAY------------------HLQKSTCGKCG 38 (97)
T ss_dssp CCEECCTTTCSSCE------------------ETTSCCBTTTC
T ss_pred CCCCcCCCCCCccC------------------cCccccCcccC
Confidence 44558999998753 45677888888
No 163
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=38.14 E-value=12 Score=22.23 Aligned_cols=19 Identities=37% Similarity=0.669 Sum_probs=10.5
Q ss_pred cCCCCCCceEEEEecceeeeE
Q 035287 22 ACPYCGGPVLAIDFDAHLRFC 42 (68)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfC 42 (68)
.|| ||-. .++|=.+.|+-|
T Consensus 6 ~C~-C~~~-~~~~~~~kT~~C 24 (71)
T 1gh9_A 6 RCD-CGRA-LYSREGAKTRKC 24 (71)
T ss_dssp EET-TSCC-EEEETTCSEEEE
T ss_pred ECC-CCCE-EEEcCCCcEEEC
Confidence 377 7655 444545555544
No 164
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=37.98 E-value=9.5 Score=22.06 Aligned_cols=7 Identities=43% Similarity=1.336 Sum_probs=5.9
Q ss_pred cCCCCCC
Q 035287 22 ACPYCGG 28 (68)
Q Consensus 22 ~Cp~CGG 28 (68)
.||+||.
T Consensus 15 ~CpnC~~ 21 (59)
T 3lpe_B 15 ICPICHS 21 (59)
T ss_dssp BCTTTCC
T ss_pred CCCCCCC
Confidence 4999995
No 165
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=37.93 E-value=11 Score=25.51 Aligned_cols=14 Identities=36% Similarity=0.816 Sum_probs=11.0
Q ss_pred CCCCcCCCCCCceE
Q 035287 18 GADAACPYCGGPVL 31 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~ 31 (68)
.|.+.||.|+|.+.
T Consensus 76 Gal~~CP~C~G~l~ 89 (160)
T 2riq_A 76 GALLPCEECSGQLV 89 (160)
T ss_dssp CEECCCTTTCCCEE
T ss_pred CCCCCCCCCCCEEE
Confidence 47789999998544
No 166
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=37.89 E-value=11 Score=18.43 Aligned_cols=39 Identities=28% Similarity=0.624 Sum_probs=21.2
Q ss_pred CCcCCCCCCceE-EEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 20 DAACPYCGGPVL-AIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 20 ~G~Cp~CGG~v~-a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
|-.|+.||-... ..++....+. ....++|.|+.|++...
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~~------h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLRT------HTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHHH------HHCCCCEECSSSSCEES
T ss_pred CccCCCCcchhCChHHHHHHHHH------cCCCCCcCCCCCcchhC
Confidence 346777775432 2222222221 22356799999998764
No 167
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=37.81 E-value=3.8 Score=18.36 Aligned_cols=11 Identities=36% Similarity=1.105 Sum_probs=7.5
Q ss_pred eEEeeccccee
Q 035287 53 KFYCTICSRRL 63 (68)
Q Consensus 53 k~~Ct~C~r~L 63 (68)
.|.|..|++..
T Consensus 2 p~~C~~C~k~f 12 (32)
T 2kfq_A 2 AFACPACPKRF 12 (32)
T ss_dssp CSSSSSSCTTH
T ss_pred CCCCCCCCccc
Confidence 46788887653
No 168
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=37.66 E-value=22 Score=23.83 Aligned_cols=38 Identities=21% Similarity=0.523 Sum_probs=23.7
Q ss_pred ecCCCCcCCCCCCceEEEEecceeeeEEe-eeeeeecceEEeeccc
Q 035287 16 RNGADAACPYCGGPVLAIDFDAHLRFCFL-PISHKVKKKFYCTICS 60 (68)
Q Consensus 16 ~~~A~G~Cp~CGG~v~a~Dves~~rfCfl-P~~~k~krk~~Ct~C~ 60 (68)
.|++...||+||... ...||-+ =|+-..|.-|-|..||
T Consensus 67 ~q~~~~~C~~Cg~~f-------~~Y~C~~C~l~d~~k~~yHC~~Cg 105 (143)
T 2dkt_A 67 LQHAQQTCEDCSTLF-------GEYYCSICHLFDKDKRQYHCESCG 105 (143)
T ss_dssp EECSCSBCSSSCCBS-------CSEECSSSCCEECSSSEEEETTTT
T ss_pred cccccCcCCCCCccc-------eeeEeceeecccCCCceecCCCCC
Confidence 356677999998543 4556643 2222456777777776
No 169
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.66 E-value=5.5 Score=18.99 Aligned_cols=14 Identities=21% Similarity=0.731 Sum_probs=10.0
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2enf_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CcCeECCCCCcccC
Confidence 46688888887653
No 170
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=37.58 E-value=5.8 Score=19.00 Aligned_cols=14 Identities=29% Similarity=0.764 Sum_probs=10.0
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ely_A 10 EKPFKCVECGKGFS 23 (46)
T ss_dssp CCSBCCSSSCCCBS
T ss_pred CCCcccCccCcccC
Confidence 46688888887654
No 171
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.57 E-value=5.6 Score=18.91 Aligned_cols=14 Identities=21% Similarity=0.771 Sum_probs=9.6
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2eov_A 10 EKPYKCSDCGKSFT 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CCCccCCccChhhC
Confidence 45678888887653
No 172
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=36.87 E-value=6.5 Score=18.72 Aligned_cols=14 Identities=29% Similarity=0.866 Sum_probs=10.4
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (45)
T 2epq_A 8 EKPYSCPVCGLRFK 21 (45)
T ss_dssp CCSSEETTTTEECS
T ss_pred CCCCcCCCCCcccC
Confidence 46788888887653
No 173
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=36.85 E-value=8.7 Score=22.45 Aligned_cols=12 Identities=33% Similarity=0.977 Sum_probs=9.4
Q ss_pred CCcCCCCCCceE
Q 035287 20 DAACPYCGGPVL 31 (68)
Q Consensus 20 ~G~Cp~CGG~v~ 31 (68)
...||.||+...
T Consensus 18 k~~CP~CG~~T~ 29 (60)
T 2apo_B 18 KEICPKCGEKTV 29 (60)
T ss_dssp SSBCSSSCSBCB
T ss_pred cccCcCCCCcCC
Confidence 557999998754
No 174
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.76 E-value=5.8 Score=19.06 Aligned_cols=14 Identities=21% Similarity=0.842 Sum_probs=10.1
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eon_A 10 EKPYKCQVCGKAFR 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CcccCCCCCCcccC
Confidence 46788888887654
No 175
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.55 E-value=5.1 Score=21.68 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=22.5
Q ss_pred CCCcCCCCCCceEEEE--ecceeeeEEeeeeeeecceEEeecccceee
Q 035287 19 ADAACPYCGGPVLAID--FDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 19 A~G~Cp~CGG~v~a~D--ves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
-...|+.||-+|...+ |+.. --.| +..=|.|+.|++.|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~------~~~~-H~~CF~C~~C~~~L~ 44 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYG------GQTW-HEHCFLCSGCEQPLG 44 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECST------TCCE-ETTTCBCTTTCCBTT
T ss_pred cCCCCccCCCccccCccEEEEC------cccc-CcccCeECCCCCcCC
Confidence 3468999999887532 1111 0011 234467888887775
No 176
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=36.54 E-value=14 Score=21.62 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=10.0
Q ss_pred CCcCCCCCCceEE
Q 035287 20 DAACPYCGGPVLA 32 (68)
Q Consensus 20 ~G~Cp~CGG~v~a 32 (68)
...||.||+....
T Consensus 17 k~~CP~CG~~t~~ 29 (60)
T 2aus_D 17 KETCPVCGEKTKV 29 (60)
T ss_dssp SSBCTTTCSBCEE
T ss_pred cccCcCCCCccCC
Confidence 4569999998654
No 177
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.39 E-value=5.7 Score=18.40 Aligned_cols=14 Identities=21% Similarity=0.755 Sum_probs=9.2
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2ytb_A 9 EKPYRCDQCGKAFS 22 (42)
T ss_dssp CCSBCCTTTTCCBS
T ss_pred CCCeeCCCccchhC
Confidence 45677777777543
No 178
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.32 E-value=6.5 Score=18.65 Aligned_cols=14 Identities=21% Similarity=0.745 Sum_probs=10.3
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eq3_A 10 EKPYECNQCGKAFS 23 (46)
T ss_dssp CCSSEETTTTEECS
T ss_pred CCCeECCCCChhhC
Confidence 46788888887654
No 179
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=36.13 E-value=13 Score=20.39 Aligned_cols=16 Identities=25% Similarity=0.661 Sum_probs=11.0
Q ss_pred eeecCCCC--cCCCCCCc
Q 035287 14 IRRNGADA--ACPYCGGP 29 (68)
Q Consensus 14 ~~~~~A~G--~Cp~CGG~ 29 (68)
+.-+..|. .||-||.+
T Consensus 22 t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 22 VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCGGGSCTTCBCTTTCCB
T ss_pred cchhhCCCCCcCcCCCCc
Confidence 33345566 99999976
No 180
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.38 E-value=5.9 Score=18.88 Aligned_cols=14 Identities=21% Similarity=0.776 Sum_probs=9.6
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emg_A 10 ENPFICSECGKVFT 23 (46)
T ss_dssp CCSCBCTTTCCBCS
T ss_pred CCCEECCccCcccC
Confidence 45678888887643
No 181
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.31 E-value=6.4 Score=18.83 Aligned_cols=14 Identities=36% Similarity=0.930 Sum_probs=9.7
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yth_A 10 EKPFQCEECGKRFT 23 (46)
T ss_dssp SSSBCCSSSCCCBS
T ss_pred CcCCCCCCCCcccC
Confidence 45678888887643
No 182
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.21 E-value=10 Score=20.51 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=22.8
Q ss_pred CCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 20 DAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
...|+.||.+|...+... =.+--.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~----~a~~~~~-H~~CF~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGV----VALDRVF-HVGCFVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCE----ECSSSEE-CTTTCBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEE----EECCCeE-cccCCcccccCCcCC
Confidence 468999999887532110 0011111 234577888888874
No 183
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.19 E-value=4.7 Score=18.94 Aligned_cols=13 Identities=23% Similarity=0.782 Sum_probs=8.4
Q ss_pred cceEEeeccccee
Q 035287 51 KKKFYCTICSRRL 63 (68)
Q Consensus 51 krk~~Ct~C~r~L 63 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (44)
T 2en7_A 10 MKPYVCNECGKAF 22 (44)
T ss_dssp SSSSCCTTTCCCC
T ss_pred CcCeECCCCCCcc
Confidence 3557777777654
No 184
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=34.68 E-value=20 Score=23.75 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=14.2
Q ss_pred CcCCCCCCceEEEEecceeee
Q 035287 21 AACPYCGGPVLAIDFDAHLRF 41 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rf 41 (68)
..||+||..-++.-||+.--.
T Consensus 53 akcprcgaegsvsivetkngy 73 (131)
T 2x5c_A 53 AKCPRCGAEGSVSIVETKNGY 73 (131)
T ss_dssp EECTTTSCEEEEEEEECTTSC
T ss_pred ccCCCCCCccceEEEEecCCc
Confidence 469999977666666654433
No 185
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.63 E-value=7 Score=18.56 Aligned_cols=14 Identities=29% Similarity=0.861 Sum_probs=10.0
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (43)
T 2yrm_A 8 NGAFFCNECDCRFS 21 (43)
T ss_dssp SCCBCCSSSCCCBS
T ss_pred CCCEECCCCCCeeC
Confidence 46688888887654
No 186
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=34.55 E-value=11 Score=23.68 Aligned_cols=13 Identities=31% Similarity=0.853 Sum_probs=9.2
Q ss_pred CCCcCCCCCCceE
Q 035287 19 ADAACPYCGGPVL 31 (68)
Q Consensus 19 A~G~Cp~CGG~v~ 31 (68)
-...|||||-...
T Consensus 47 g~~~CpYCg~~y~ 59 (87)
T 2jz8_A 47 DEKICPYCSTLYR 59 (87)
T ss_dssp CEECCTTTCCEEE
T ss_pred CeEECCCCCCEeE
Confidence 4458999996543
No 187
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.52 E-value=5.7 Score=18.93 Aligned_cols=13 Identities=23% Similarity=0.823 Sum_probs=9.0
Q ss_pred cceEEeeccccee
Q 035287 51 KKKFYCTICSRRL 63 (68)
Q Consensus 51 krk~~Ct~C~r~L 63 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq1_A 10 EKPYKCNECGKAF 22 (46)
T ss_dssp SCCCCCTTTTCCC
T ss_pred CCCeECCcCChhh
Confidence 4567788887754
No 188
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=34.50 E-value=6.8 Score=19.74 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=17.6
Q ss_pred EEEeCCceeeeeecCCCCcCCCCCC
Q 035287 4 LSIFDLREKVIRRNGADAACPYCGG 28 (68)
Q Consensus 4 ~~vcde~~kv~~~~~A~G~Cp~CGG 28 (68)
+|-|++.+-+.+.=+++..|-+||.
T Consensus 3 C~~Cg~~GH~~~~C~~~~~C~~Cg~ 27 (37)
T 2bl6_A 3 CYNCGKPGHLSSQCRAPKVCFKCKQ 27 (37)
T ss_dssp BSSSCCSSCCTTTSSCBTTCSSCCC
T ss_pred ccccCCCCcchhhCcCcCeEccCCC
Confidence 3456666666666677788888885
No 189
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=34.31 E-value=3.8 Score=23.01 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=13.0
Q ss_pred eeeecCCCCcCCCCCCceEEE
Q 035287 13 VIRRNGADAACPYCGGPVLAI 33 (68)
Q Consensus 13 v~~~~~A~G~Cp~CGG~v~a~ 33 (68)
|+..|+..-.||.|+|.=...
T Consensus 2 ~~~~qq~~~~C~~C~GsG~~i 22 (53)
T 3lcz_A 2 VIATDDLETTCPNCNGSGREE 22 (53)
T ss_dssp CSCHHHHEEECTTTTTSCEET
T ss_pred eeecCceeccCcCCcccccCC
Confidence 344555566788887765544
No 190
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.13 E-value=6.8 Score=18.73 Aligned_cols=14 Identities=21% Similarity=0.615 Sum_probs=9.6
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2elz_A 10 EKPYKCEDCGKGYN 23 (46)
T ss_dssp CSSCBCSSSCCBCS
T ss_pred CCCeeCcccCchhC
Confidence 45677888887643
No 191
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.13 E-value=5.9 Score=22.03 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=19.7
Q ss_pred CcCCCCCCceEEEEecceeeeEEeeeeeee--cceEEeecccceee
Q 035287 21 AACPYCGGPVLAIDFDAHLRFCFLPISHKV--KKKFYCTICSRRLV 64 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~--krk~~Ct~C~r~L~ 64 (68)
-.|+.||.+|...-|. .--++ ..=|.|+.|++.|.
T Consensus 6 ~~C~~C~~~I~~~~v~---------a~~~~wH~~CF~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLE---------AGEKHYHPSCALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBC---------CSSCCBCTTTSCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEE---------eCCCCCCCCcCEeCCCCCCCC
Confidence 4799999888641111 11122 23366777777765
No 192
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.13 E-value=7.1 Score=18.65 Aligned_cols=14 Identities=21% Similarity=0.838 Sum_probs=10.0
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em6_A 10 EKCYKCDVCGKEFS 23 (46)
T ss_dssp CCCCBCSSSCCBCS
T ss_pred CCCeECCCCCcccC
Confidence 46688888887653
No 193
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.98 E-value=7.4 Score=18.42 Aligned_cols=14 Identities=21% Similarity=0.731 Sum_probs=10.4
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2eoe_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp CCSSEETTTTEECS
T ss_pred CCCeECCCcChhhC
Confidence 56788888887643
No 194
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=33.87 E-value=17 Score=21.29 Aligned_cols=10 Identities=20% Similarity=0.530 Sum_probs=8.2
Q ss_pred CCCCCCceEE
Q 035287 23 CPYCGGPVLA 32 (68)
Q Consensus 23 Cp~CGG~v~a 32 (68)
||.|+.++.+
T Consensus 28 CP~C~~~~~~ 37 (86)
T 2ct7_A 28 CAQCSFGFIY 37 (86)
T ss_dssp CSSSCCCEEC
T ss_pred CcCCCchhee
Confidence 9999988754
No 195
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.77 E-value=6.5 Score=18.73 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=9.6
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2ytn_A 10 KKPYKCNECGKVFT 23 (46)
T ss_dssp CSSCBCTTTCCBCS
T ss_pred CcCeECCCCCCeeC
Confidence 46677888877643
No 196
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.74 E-value=7.5 Score=18.42 Aligned_cols=14 Identities=29% Similarity=0.845 Sum_probs=9.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (47)
T 2epx_A 10 KKPYECIECGKAFI 23 (47)
T ss_dssp CCSBCCSSSCCCBS
T ss_pred CCCEECCccCchhC
Confidence 46688888887653
No 197
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.68 E-value=6.4 Score=18.84 Aligned_cols=14 Identities=21% Similarity=0.838 Sum_probs=9.6
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2enh_A 10 EKPYECDVCRKAFS 23 (46)
T ss_dssp SSSCBCTTTCCBCS
T ss_pred CCCcCCCCcCchhC
Confidence 45678888887643
No 198
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=33.67 E-value=11 Score=22.60 Aligned_cols=9 Identities=44% Similarity=1.416 Sum_probs=6.8
Q ss_pred CCcCCCCCC
Q 035287 20 DAACPYCGG 28 (68)
Q Consensus 20 ~G~Cp~CGG 28 (68)
.-.||+||.
T Consensus 23 ~~~CPnC~s 31 (69)
T 1ryq_A 23 EDRCPVCGS 31 (69)
T ss_dssp SSSCTTTCC
T ss_pred CCcCCCccC
Confidence 346999984
No 199
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=33.58 E-value=37 Score=22.92 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=6.6
Q ss_pred CCCCcCCCCCCc
Q 035287 18 GADAACPYCGGP 29 (68)
Q Consensus 18 ~A~G~Cp~CGG~ 29 (68)
.+|-.||-||.+
T Consensus 184 ~~p~~CP~C~~~ 195 (202)
T 1yuz_A 184 EDFEKCPICFRP 195 (202)
T ss_dssp SCCSBCTTTCCB
T ss_pred cCCCCCCCCCCC
Confidence 455566666554
No 200
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=33.57 E-value=14 Score=18.03 Aligned_cols=14 Identities=21% Similarity=0.617 Sum_probs=11.1
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|+.|++...
T Consensus 27 ~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 27 VRPYHCTYCNFSFK 40 (57)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCccCCCCCchhc
Confidence 46799999998764
No 201
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.55 E-value=6.5 Score=18.81 Aligned_cols=14 Identities=21% Similarity=0.710 Sum_probs=9.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emz_A 10 ERPFKCNECGKGFG 23 (46)
T ss_dssp CCSCCCSSSCCCCS
T ss_pred CCCeECCCCCcccC
Confidence 45688888887653
No 202
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.52 E-value=6.2 Score=18.69 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=9.6
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (44)
T 2eou_A 10 KTTSECQECGKIFR 23 (44)
T ss_dssp SCCCCCTTTCCCCS
T ss_pred CcCeECCCCCcccC
Confidence 45677888877653
No 203
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=33.45 E-value=20 Score=26.48 Aligned_cols=34 Identities=32% Similarity=0.845 Sum_probs=19.6
Q ss_pred CCcCCCCCC-ceEEEEecceeeeEEeeeeeeecceEEeecccceeee
Q 035287 20 DAACPYCGG-PVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLVP 65 (68)
Q Consensus 20 ~G~Cp~CGG-~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (68)
.+.||+||- +++. .+..... .-|+|..|+-.+++
T Consensus 34 n~yCPnCG~~~l~~--f~nN~PV----------aDF~C~~C~EeyEL 68 (257)
T 4esj_A 34 QSYCPNCGNNPLNH--FENNRPV----------ADFYCNHCSEEFEL 68 (257)
T ss_dssp HCCCTTTCCSSCEE--C----CC----------CEEECTTTCCEEEE
T ss_pred CCcCCCCCChhhhh--ccCCCcc----------cccccCCcchhhee
Confidence 468999998 4533 2222211 23788888877654
No 204
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.37 E-value=13 Score=19.57 Aligned_cols=14 Identities=36% Similarity=0.885 Sum_probs=9.6
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 13 ~k~~~C~~C~k~f~ 26 (77)
T 2ct1_A 13 EKPYECYICHARFT 26 (77)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCeECCCcCchhC
Confidence 45677888877654
No 205
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.32 E-value=6.7 Score=18.83 Aligned_cols=14 Identities=14% Similarity=0.603 Sum_probs=9.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2eom_A 10 ERGHRCSDCGKFFL 23 (46)
T ss_dssp CSSCCCSSSCCCCS
T ss_pred CCCcCCCCCCCeeC
Confidence 46688888887643
No 206
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.28 E-value=7.4 Score=18.58 Aligned_cols=14 Identities=21% Similarity=0.719 Sum_probs=9.7
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.++|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytq_A 10 EKPYGCSECGKAFS 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CCCcCCCccChhhC
Confidence 45678888887643
No 207
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=33.15 E-value=16 Score=18.19 Aligned_cols=14 Identities=21% Similarity=0.719 Sum_probs=9.3
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (54)
T 2eps_A 10 GKPYICQSCGKGFS 23 (54)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCeECCCCCcccC
Confidence 45677777777653
No 208
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.90 E-value=7.1 Score=18.65 Aligned_cols=14 Identities=36% Similarity=0.823 Sum_probs=9.6
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2en9_A 10 KKLFKCNECKKTFT 23 (46)
T ss_dssp SCCCBCTTTCCBCS
T ss_pred CCCEECCccCcccC
Confidence 45678888877643
No 209
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.86 E-value=5.8 Score=18.83 Aligned_cols=14 Identities=21% Similarity=0.831 Sum_probs=9.4
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ep1_A 10 EKPYECSDCGKSFI 23 (46)
T ss_dssp CCSSCCSSSCCCCS
T ss_pred CCCcCCCCCCchhC
Confidence 45677888877643
No 210
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=32.70 E-value=14 Score=19.06 Aligned_cols=42 Identities=31% Similarity=0.627 Sum_probs=22.7
Q ss_pred cCCCCcCC--CCCCceEE-EEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 17 NGADAACP--YCGGPVLA-IDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 17 ~~A~G~Cp--~CGG~v~a-~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
..-+-.|+ .||-...- .++....+. ....+.|.|..|++...
T Consensus 16 ~~~~~~C~~~~C~k~f~~~~~l~~H~~~------h~~~~~~~C~~C~~~f~ 60 (73)
T 1f2i_G 16 KMRPYACPVESCDRRFSRSDELTRHIRI------HTGQKPFQCRICMRNFS 60 (73)
T ss_dssp CCCCEECSSTTBCCEESSHHHHHHHHHH------HHCCCCEECTTTCCEES
T ss_pred CCCccCCcCCCCCCccCCHHHHHHHHHh------hCCCCCeECCCCCchhC
Confidence 34456787 48754321 122222221 22356799999998764
No 211
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.55 E-value=8.2 Score=22.02 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 19 ADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 19 A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
....|..|+..|...-|+. +--.| +..=|.|+.|++.|.
T Consensus 24 ~~~~C~~C~~~I~~~~~~a------~~~~~-H~~CF~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKA------RDKYR-HPECFVCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCSCCEES------SSCEE-CTTTCCCSSSCCCTT
T ss_pred cCCCcccCCCEecccEEEE------CCceE-CccCCEecCCCCCCC
Confidence 4467999999887411111 11111 334577999998875
No 212
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=32.21 E-value=26 Score=21.53 Aligned_cols=13 Identities=38% Similarity=0.833 Sum_probs=10.8
Q ss_pred CCCcCCCCCCceE
Q 035287 19 ADAACPYCGGPVL 31 (68)
Q Consensus 19 A~G~Cp~CGG~v~ 31 (68)
..+.|+|||..+.
T Consensus 34 ~~~~C~yCg~~~~ 46 (112)
T 2qgp_A 34 ARGICHYCGEIFP 46 (112)
T ss_dssp HHTBCTTTCCBCC
T ss_pred cCCcCCCCCCcCC
Confidence 5689999998863
No 213
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.15 E-value=7.2 Score=18.48 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=8.9
Q ss_pred cceEEeeccccee
Q 035287 51 KKKFYCTICSRRL 63 (68)
Q Consensus 51 krk~~Ct~C~r~L 63 (68)
.+.|.|..|++..
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eop_A 10 EKPHECRECGKSF 22 (46)
T ss_dssp CCSCBCTTTCCBC
T ss_pred CCCeeCCCCCchh
Confidence 4567777777654
No 214
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=32.10 E-value=14 Score=22.47 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=9.1
Q ss_pred CCCCcCCCCCCc
Q 035287 18 GADAACPYCGGP 29 (68)
Q Consensus 18 ~A~G~Cp~CGG~ 29 (68)
..---||.||++
T Consensus 28 ~~k~FCp~CGn~ 39 (79)
T 2con_A 28 MNRVFCGHCGNK 39 (79)
T ss_dssp SSCCSCSSSCCS
T ss_pred cccccccccCcc
Confidence 344579999996
No 215
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=32.10 E-value=29 Score=25.15 Aligned_cols=29 Identities=28% Similarity=0.651 Sum_probs=20.7
Q ss_pred cCCCCCC--ceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 22 ACPYCGG--PVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 22 ~Cp~CGG--~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
.||.||+ .-.+.|.++.- .+|+.||-.|.
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~--------------~vC~~CGlVl~ 53 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGD--------------VVCALCGLVLS 53 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTE--------------EEETTTCBEEE
T ss_pred cCCCCCCCCCceeEECCCCc--------------EEeCCCCCCcc
Confidence 7999998 45667776544 56678887664
No 216
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.68 E-value=7.2 Score=18.56 Aligned_cols=14 Identities=36% Similarity=0.966 Sum_probs=9.3
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2eoq_A 10 EKPFKCDICGKSFC 23 (46)
T ss_dssp SCSCCCSSSCCCCS
T ss_pred CCCcCCCcCCchhC
Confidence 45677888877643
No 217
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=31.58 E-value=5.1 Score=26.05 Aligned_cols=37 Identities=32% Similarity=0.615 Sum_probs=21.6
Q ss_pred cCCCCCCceEEEEe-cceeeeEEeeeeeeecceEEeecccceee
Q 035287 22 ACPYCGGPVLAIDF-DAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 22 ~Cp~CGG~v~a~Dv-es~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
.|+.|+.+|...|. -+..---| +..=|.|+.|++.|.
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~------H~~CF~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVY------HLKCFTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEE------CGGGCBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEEcCCCEE------eCCCCeECCCCCCCC
Confidence 79999999875431 11100011 234577888888874
No 218
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=31.53 E-value=19 Score=19.72 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=11.3
Q ss_pred eecCCCCcCCCCCCce
Q 035287 15 RRNGADAACPYCGGPV 30 (68)
Q Consensus 15 ~~~~A~G~Cp~CGG~v 30 (68)
+.+...-.||.||+.-
T Consensus 4 ~~~t~~~~Cp~Cg~~~ 19 (50)
T 1tfi_A 4 GTQTDLFTCGKCKKKN 19 (50)
T ss_dssp CEECCCSCCSSSCSSC
T ss_pred CceeCccCCCCCCCCE
Confidence 4455566899999754
No 219
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.35 E-value=7.8 Score=18.42 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=9.8
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2epz_A 10 EKPFDCIDCGKAFS 23 (46)
T ss_dssp CCSBCCTTTCCCBS
T ss_pred CCCeECCCCCceeC
Confidence 45688888887643
No 220
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.34 E-value=8.1 Score=18.44 Aligned_cols=15 Identities=27% Similarity=0.727 Sum_probs=10.4
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (46)
T 2eoh_A 9 GKKPYECKECRKTFI 23 (46)
T ss_dssp CSCSCCCSSSCCCCS
T ss_pred CCCCcCCCCcCchhC
Confidence 346788888887643
No 221
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.28 E-value=6 Score=18.86 Aligned_cols=13 Identities=23% Similarity=0.774 Sum_probs=8.7
Q ss_pred cceEEeeccccee
Q 035287 51 KKKFYCTICSRRL 63 (68)
Q Consensus 51 krk~~Ct~C~r~L 63 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq2_A 10 GKPYQCNECGKAF 22 (46)
T ss_dssp SCSSSCCSSCCCC
T ss_pred CCCeECCCCCccc
Confidence 4567777777654
No 222
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.16 E-value=8.2 Score=18.25 Aligned_cols=14 Identities=21% Similarity=0.721 Sum_probs=9.7
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eq4_A 10 EKLYNCKECGKSFS 23 (46)
T ss_dssp CCCCCBTTTTBCCS
T ss_pred CCCeECCCCCCccC
Confidence 45678888887643
No 223
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.09 E-value=9.4 Score=21.90 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.3
Q ss_pred CCcCCCCCCceE
Q 035287 20 DAACPYCGGPVL 31 (68)
Q Consensus 20 ~G~Cp~CGG~v~ 31 (68)
...|+.||.+|.
T Consensus 5 ~~~C~~C~~~I~ 16 (101)
T 2cup_A 5 SSGCVECRKPIG 16 (101)
T ss_dssp CCBCSSSCCBCC
T ss_pred CCcCcccCCccc
Confidence 457889988885
No 224
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.08 E-value=9.7 Score=21.18 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=20.3
Q ss_pred CcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 21 AACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
-.|+.||.+|...-|+. +--.| +..=|.|+.|++.|.
T Consensus 16 ~~C~~C~~~I~~~~v~a------~~~~w-H~~CF~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSA------LGKTY-HPDCFVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEE------TTEEE-CTTTSSCSSSCCCCC
T ss_pred CcCccccCEeccceEEE------CCcee-CccCCccccCCCCCC
Confidence 38999999887321111 11111 234456777777764
No 225
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.05 E-value=20 Score=19.84 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 19 ADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 19 A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
....|+.||.+|...-|+ .+--.| +..=|.|+.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~------a~~~~~-H~~CF~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILR------AMGKAY-HPGCFTCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCCSCCEE------ETTEEE-CTTTCBCSSSCCBCT
T ss_pred CCCccccCCCeecceeEE------ECCccc-cHHhcCcccCCCccC
Confidence 457899999998621111 111112 334578999988875
No 226
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=30.71 E-value=15 Score=18.19 Aligned_cols=14 Identities=29% Similarity=0.892 Sum_probs=11.1
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|+.|++...
T Consensus 28 ~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 28 EKPYPCGLCNRAFT 41 (60)
T ss_dssp SCSEECTTTCCEES
T ss_pred CCCccCCCCCCccC
Confidence 46799999998764
No 227
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=30.64 E-value=8.5 Score=18.35 Aligned_cols=14 Identities=21% Similarity=0.717 Sum_probs=9.3
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emk_A 10 EKPYECKECGKAFS 23 (46)
T ss_dssp SCSCBCSSSCCBCS
T ss_pred CCceECCCCCchhC
Confidence 45677888877643
No 228
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=30.60 E-value=18 Score=22.34 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=23.6
Q ss_pred CCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 20 DAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
+..|+.||..|.... .+-.+--.| +..=|.|+.|++.|.
T Consensus 61 ~~~C~~C~~~I~~~~-----~v~a~~~~w-H~~CF~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF-----LLYAMDSYW-HSRCLKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSS-----EEEETTEEE-ETTTSBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcE-----EEEeCCcEE-cccccCcCcCCCccc
Confidence 457999999886321 111111112 234588999999985
No 229
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.57 E-value=34 Score=19.34 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=24.4
Q ss_pred CCCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 18 GADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
.....|+.||..|..- .+-.+--.| ++.=|.|+.|++.|.
T Consensus 23 ~~~~~C~~C~~~I~~~------~v~a~~~~~-H~~CF~C~~C~~~L~ 62 (90)
T 2dar_A 23 KRTPMCAHCNQVIRGP------FLVALGKSW-HPEEFNCAHCKNTMA 62 (90)
T ss_dssp TCCCBBSSSCCBCCSC------EEEETTEEE-CTTTCBCSSSCCBCS
T ss_pred CCCCCCccCCCEecce------EEEECCccc-cccCCccCCCCCCCC
Confidence 4456899999988421 111111122 345688999998885
No 230
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=30.49 E-value=12 Score=21.02 Aligned_cols=9 Identities=33% Similarity=1.412 Sum_probs=6.6
Q ss_pred EEeecccce
Q 035287 54 FYCTICSRR 62 (68)
Q Consensus 54 ~~Ct~C~r~ 62 (68)
..|+||||.
T Consensus 12 ~~CSFCGk~ 20 (51)
T 2ds5_A 12 LYCSFCGKS 20 (51)
T ss_dssp CBCTTTCCB
T ss_pred cEecCCCCC
Confidence 458888874
No 231
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.44 E-value=16 Score=18.81 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=8.7
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 7 ~~~~~C~~C~k~f~ 20 (70)
T 1x5w_A 7 GHPEKCSECSYSCS 20 (70)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCeECCCCCcccC
Confidence 45677777776543
No 232
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=30.41 E-value=32 Score=21.07 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=7.7
Q ss_pred CcCCCCCCceEE
Q 035287 21 AACPYCGGPVLA 32 (68)
Q Consensus 21 G~Cp~CGG~v~a 32 (68)
..||-|+..+..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 457777766654
No 233
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.04 E-value=18 Score=18.84 Aligned_cols=12 Identities=25% Similarity=0.791 Sum_probs=6.8
Q ss_pred ceEEeeccccee
Q 035287 52 KKFYCTICSRRL 63 (68)
Q Consensus 52 rk~~Ct~C~r~L 63 (68)
+.|.|..|++..
T Consensus 13 k~~~C~~C~k~f 24 (72)
T 1x6e_A 13 KPYGCVECGKAF 24 (72)
T ss_dssp CCEECSSSCCEE
T ss_pred CCccCCCCCCcc
Confidence 456666666544
No 234
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.98 E-value=16 Score=19.15 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=11.2
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.++|.|..|++...
T Consensus 36 ~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 36 ALRFPCEFCGKRFE 49 (78)
T ss_dssp TCCEECTTTCCEES
T ss_pred CcccCCCCCCchhC
Confidence 46799999998764
No 235
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=29.88 E-value=10 Score=16.34 Aligned_cols=13 Identities=38% Similarity=1.114 Sum_probs=8.3
Q ss_pred ceEEee--cccceee
Q 035287 52 KKFYCT--ICSRRLV 64 (68)
Q Consensus 52 rk~~Ct--~C~r~L~ 64 (68)
+.|.|+ .||+...
T Consensus 1 kp~~C~~~~C~k~f~ 15 (31)
T 1sp2_A 1 RPFMCTWSYCGKRFT 15 (31)
T ss_dssp CCCBCCSTTCCCBCS
T ss_pred CCcCCcCCCCCcccC
Confidence 356776 7877643
No 236
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.80 E-value=15 Score=20.16 Aligned_cols=42 Identities=26% Similarity=0.562 Sum_probs=21.2
Q ss_pred CCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 20 DAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
+..|+.||-+|..+ .....+=.+--.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~--g~~~~~~a~~~~w-H~~CF~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGL--TGAKFICFQDSQW-HSECFNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTT--TTCCEEEETTEEE-EGGGCBCTTTCCBCS
T ss_pred CCCCccCCCcccCC--CCceeEEECCccc-CcccCChhhCCCcCC
Confidence 45799999887630 0000000011111 334577888877774
No 237
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=29.50 E-value=20 Score=24.46 Aligned_cols=12 Identities=17% Similarity=0.420 Sum_probs=9.3
Q ss_pred CCcCCCCCCceE
Q 035287 20 DAACPYCGGPVL 31 (68)
Q Consensus 20 ~G~Cp~CGG~v~ 31 (68)
.-.||.|||.+.
T Consensus 145 ~p~C~~Cgg~lr 156 (246)
T 1yc5_A 145 VPLCDDCNSLIR 156 (246)
T ss_dssp SCBCTTTCCBEE
T ss_pred CCCCCCCCCccC
Confidence 458999999753
No 238
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=29.45 E-value=16 Score=25.53 Aligned_cols=13 Identities=31% Similarity=0.922 Sum_probs=9.8
Q ss_pred cCCCCCCceEEEE
Q 035287 22 ACPYCGGPVLAID 34 (68)
Q Consensus 22 ~Cp~CGG~v~a~D 34 (68)
.|..|||.-.+--
T Consensus 136 ~C~~Cgg~fv~~~ 148 (192)
T 2avu_E 136 SCNCCGGNFITHA 148 (192)
T ss_dssp ECTTTCCEEEEES
T ss_pred cCCCCCCCeeCcc
Confidence 6999999866543
No 239
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.91 E-value=13 Score=20.48 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=23.9
Q ss_pred CCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceeee
Q 035287 20 DAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLVP 65 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (68)
...|+.||.+|..--|+ .+--.| +..=|.|+.|++.|..
T Consensus 15 ~~~C~~C~~~I~~~~v~------a~~~~~-H~~CF~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLENYLS------AMDTVW-HPECFVCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCSSCEE------ETTEEE-CTTTCBCSSSCCBSCS
T ss_pred CCccccCCCeecceeEE------ECCCeE-ecCcCChhhCCCCCCC
Confidence 35899999998741111 111112 3355789999998863
No 240
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=28.89 E-value=18 Score=19.61 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=11.0
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
-.+.|.|..||+...
T Consensus 29 ~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 29 GYRPRSCPECGKCFR 43 (60)
T ss_dssp TCCCEECTTTCCEES
T ss_pred CCcCeECCCCCCCcC
Confidence 356788888887654
No 241
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=28.86 E-value=32 Score=25.36 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=9.8
Q ss_pred CCCCcCCCCCCceE
Q 035287 18 GADAACPYCGGPVL 31 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~ 31 (68)
+.+..||+||+...
T Consensus 261 ~~~~~C~~cg~~~~ 274 (392)
T 3axs_A 261 KFKEKCPHCGSKFH 274 (392)
T ss_dssp GCCSBCTTTCSBCE
T ss_pred CCCCcCCCCCCccc
Confidence 46678888886544
No 242
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=28.33 E-value=23 Score=21.32 Aligned_cols=15 Identities=20% Similarity=0.605 Sum_probs=12.2
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..++++|+.||-.|-
T Consensus 64 ~~~r~FC~~CGs~l~ 78 (118)
T 3fac_A 64 TAKHWFCRTCGIYTH 78 (118)
T ss_dssp CSEEEEETTTCCEEE
T ss_pred CEeeEECCCCCcccc
Confidence 357899999998874
No 243
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.21 E-value=18 Score=18.79 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=24.6
Q ss_pred CCCCcCCCCCCceEE-EEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 18 GADAACPYCGGPVLA-IDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~a-~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
.-+-.|+.||-...- .++..+.+ .+...+.|.|..|++...
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~~H~~------~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLASHKT------VHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHHHHHH------HHCCCCSEECTTTCCEES
T ss_pred CCCeECCCCCceeCCHHHHHHHHH------HcCCCCCEECCCCCchhC
Confidence 345679999865432 22333322 123456799999998764
No 244
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.14 E-value=7.4 Score=18.66 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=9.6
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.++|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytm_A 10 EKPYKCMECGKAFG 23 (46)
T ss_dssp CCSSSBTTTTBCCS
T ss_pred CCCcCCCCCCchhC
Confidence 45677888887643
No 245
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=28.11 E-value=21 Score=24.48 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.4
Q ss_pred CCcCCCCCCceE
Q 035287 20 DAACPYCGGPVL 31 (68)
Q Consensus 20 ~G~Cp~CGG~v~ 31 (68)
+-.||.|||.+.
T Consensus 142 ~p~C~~Cgg~lr 153 (249)
T 1m2k_A 142 LPKCDKCGSLLR 153 (249)
T ss_dssp CCBCSSSSSBEE
T ss_pred CCCCCCCCCCcC
Confidence 458999999763
No 246
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.99 E-value=6.1 Score=18.75 Aligned_cols=13 Identities=23% Similarity=0.823 Sum_probs=8.2
Q ss_pred cceEEeeccccee
Q 035287 51 KKKFYCTICSRRL 63 (68)
Q Consensus 51 krk~~Ct~C~r~L 63 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytr_A 10 EKPYKCNECGKAF 22 (46)
T ss_dssp CCTTCCTTTCCCC
T ss_pred CcCcCCCCCCCcc
Confidence 4556777777654
No 247
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.99 E-value=6.4 Score=18.75 Aligned_cols=13 Identities=23% Similarity=0.787 Sum_probs=8.7
Q ss_pred cceEEeeccccee
Q 035287 51 KKKFYCTICSRRL 63 (68)
Q Consensus 51 krk~~Ct~C~r~L 63 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2yti_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp CCTTCCSSSCCCC
T ss_pred CcCeECCCCCccc
Confidence 4567777777654
No 248
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=27.74 E-value=9.6 Score=18.07 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=9.0
Q ss_pred cceEEeeccccee
Q 035287 51 KKKFYCTICSRRL 63 (68)
Q Consensus 51 krk~~Ct~C~r~L 63 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2em0_A 10 EKTWKCRECDMCF 22 (46)
T ss_dssp CCCCCCSSSCCCC
T ss_pred CcCeECCCCCccc
Confidence 4567788887754
No 249
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=27.54 E-value=40 Score=25.34 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=14.3
Q ss_pred eCCceeeeeecCCCCcCCCCCC
Q 035287 7 FDLREKVIRRNGADAACPYCGG 28 (68)
Q Consensus 7 cde~~kv~~~~~A~G~Cp~CGG 28 (68)
+-..+..+.-+..-|.||.||.
T Consensus 142 ~~~~~~~l~~~~v~g~cp~c~~ 163 (560)
T 3h99_A 142 DPEKGMFLPDRFVKGTCPKCKS 163 (560)
T ss_dssp ETTTTEECCGGGEEEECTTTCC
T ss_pred cCccCceecchhcCCCCCCCCC
Confidence 3345555555566688999884
No 250
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=27.20 E-value=24 Score=15.95 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=10.1
Q ss_pred cceEEeec--ccceee
Q 035287 51 KKKFYCTI--CSRRLV 64 (68)
Q Consensus 51 krk~~Ct~--C~r~L~ 64 (68)
.+.|.|+. |++...
T Consensus 6 ~k~~~C~~~~C~k~f~ 21 (37)
T 1va1_A 6 KKQHICHIQGCGKVYG 21 (37)
T ss_dssp CCCEECCSTTCCCEES
T ss_pred CCCCCCCCCCCCCccC
Confidence 46788885 888654
No 251
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=26.93 E-value=24 Score=21.48 Aligned_cols=14 Identities=29% Similarity=0.876 Sum_probs=10.4
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
++.|.|+.|++...
T Consensus 20 ek~y~C~~C~k~F~ 33 (133)
T 2lt7_A 20 RVYYICIVCKRSYV 33 (133)
T ss_dssp EEEEEETTTCCEES
T ss_pred CcCeECCCCCCCcC
Confidence 46788888887654
No 252
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=26.93 E-value=42 Score=23.42 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=21.7
Q ss_pred cCCCCCCc-eEEEEecceeeeE-Ee------eeeeeecceEEeecccce
Q 035287 22 ACPYCGGP-VLAIDFDAHLRFC-FL------PISHKVKKKFYCTICSRR 62 (68)
Q Consensus 22 ~Cp~CGG~-v~a~Dves~~rfC-fl------P~~~k~krk~~Ct~C~r~ 62 (68)
.||-||+. ....|+..+---. |+ |.-.-..+-+.|..|+-.
T Consensus 14 ~C~~Cg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v 62 (416)
T 4e2x_A 14 ACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMV 62 (416)
T ss_dssp ECTTTSCEEEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCE
T ss_pred cCCCCCCeeeeeeECCCCCccccCCChhhcCccceecceEEECCCCCce
Confidence 69999998 2234443211111 11 222223466889999854
No 253
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=26.73 E-value=24 Score=24.73 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=8.9
Q ss_pred CCcCCCCCCce
Q 035287 20 DAACPYCGGPV 30 (68)
Q Consensus 20 ~G~Cp~CGG~v 30 (68)
.-.||.|||.+
T Consensus 163 ~P~C~~Cgg~l 173 (289)
T 1q1a_A 163 FVKCDVCGELV 173 (289)
T ss_dssp CCBCTTTCCBE
T ss_pred CccCCCCCCEE
Confidence 45899999965
No 254
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.70 E-value=21 Score=18.64 Aligned_cols=14 Identities=21% Similarity=0.762 Sum_probs=9.4
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|+.|++...
T Consensus 13 ~k~~~C~~C~~~f~ 26 (86)
T 1x6h_A 13 EKPYACSHCDKTFR 26 (86)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCCcCCCCCCccC
Confidence 45677777777653
No 255
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=26.57 E-value=23 Score=17.81 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=9.3
Q ss_pred eEEeecccceee
Q 035287 53 KFYCTICSRRLV 64 (68)
Q Consensus 53 k~~Ct~C~r~L~ 64 (68)
+|.|+.|..++-
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 688888887764
No 256
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.03 E-value=14 Score=22.07 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=23.9
Q ss_pred CCcCCCCCCceEEEEecceeeeEEeeeeeee--cceEEeecccceee
Q 035287 20 DAACPYCGGPVLAIDFDAHLRFCFLPISHKV--KKKFYCTICSRRLV 64 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~--krk~~Ct~C~r~L~ 64 (68)
...|+.||-+|....+ |-.--+. ..=|.|+.|++.|.
T Consensus 3 ~~~C~~C~~~I~~~~~--------~~a~~~~wH~~CF~C~~C~~~L~ 41 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYF--------LKAIDQYWHEDCLSCDLCGCRLG 41 (114)
T ss_dssp CBCBSSSCSCBCSSEE--------EECSSSEECTTTCCCSSSCSCCC
T ss_pred CCCCcCCCCeeCCcEE--------EEECchhHHHhcCcccccCCchh
Confidence 4579999998874321 1111223 34588999999995
No 257
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.01 E-value=23 Score=19.80 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=11.3
Q ss_pred ecceEEeecccceee
Q 035287 50 VKKKFYCTICSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (68)
..+.|.|..|++...
T Consensus 16 ~~~~~~C~~C~k~f~ 30 (115)
T 2dmi_A 16 GASKFRCKDCSAAYD 30 (115)
T ss_dssp CCCSEEBSSSSCEES
T ss_pred CCCCEECCccCchhc
Confidence 356789999988764
No 258
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=25.97 E-value=24 Score=20.54 Aligned_cols=16 Identities=13% Similarity=0.499 Sum_probs=12.7
Q ss_pred ecceEEeecccceeee
Q 035287 50 VKKKFYCTICSRRLVP 65 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~~ 65 (68)
...+|.|+.|+.++=+
T Consensus 23 ~~akY~CPrC~~rYCS 38 (59)
T 1x4s_A 23 QPARYTCPRCNAPYCS 38 (59)
T ss_dssp EEECEECTTTCCEESS
T ss_pred CCccccCcCCCCCccC
Confidence 6778999999987643
No 259
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.83 E-value=24 Score=20.98 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCcCCCCCCceEEEE--ecceeeeEEeeeeeeecceEEeecccceee
Q 035287 20 DAACPYCGGPVLAID--FDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~D--ves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
...|+.||.++...| |+..-+ .++-...=|.|+.|++.|.
T Consensus 63 ~~~C~~C~~~I~~~~~~~~a~~~-----~~H~~~~CF~C~~C~~~l~ 104 (126)
T 2xqn_T 63 AVVCQGCHNAIDPEVQRVTYNNF-----SWHASTECFLCSCCSKCLI 104 (126)
T ss_dssp CCBCTTTCSBCCTTSCEEEETTE-----EEESSTTTSBCTTTCCBCT
T ss_pred CccCcccCCcCCcCceEEECCCC-----EeeCCCCCcCcCCCCCccC
Confidence 357999999988432 211100 0111144577888888774
No 260
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.81 E-value=23 Score=18.44 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=12.5
Q ss_pred cceEEeecccceeeec
Q 035287 51 KKKFYCTICSRRLVPA 66 (68)
Q Consensus 51 krk~~Ct~C~r~L~~~ 66 (68)
+--|.|++|-+.|.++
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 4568999999888764
No 261
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=25.79 E-value=17 Score=24.82 Aligned_cols=28 Identities=32% Similarity=0.788 Sum_probs=17.8
Q ss_pred CCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccce
Q 035287 19 ADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRR 62 (68)
Q Consensus 19 A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~ 62 (68)
....|+.||.... | -.+..++|..|+..
T Consensus 9 ~~~~Cw~C~~~~~-------------~---~~~~~~fC~~c~~~ 36 (207)
T 3bvo_A 9 NYPRCWNCGGPWG-------------P---GREDRFFCPQCRAL 36 (207)
T ss_dssp --CBCSSSCCBCC-------------S---SCSCCCBCTTTCCB
T ss_pred CCCCCCCCCCCcc-------------c---cccccccccccccc
Confidence 4568999997642 1 13566778888754
No 262
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=25.75 E-value=24 Score=18.78 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=6.3
Q ss_pred EEeecccceee
Q 035287 54 FYCTICSRRLV 64 (68)
Q Consensus 54 ~~Ct~C~r~L~ 64 (68)
+.|++|+..+.
T Consensus 10 ~~C~~C~~~i~ 20 (39)
T 2i5o_A 10 VPCEKCGSLVP 20 (39)
T ss_dssp EECTTTCCEEE
T ss_pred cccccccCcCC
Confidence 45666666543
No 263
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=25.51 E-value=19 Score=26.07 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=19.4
Q ss_pred eeeecCCCCcCC--CCCCceEEEEecceeeeEEeeeeeeecceEEeecccce
Q 035287 13 VIRRNGADAACP--YCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRR 62 (68)
Q Consensus 13 v~~~~~A~G~Cp--~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~ 62 (68)
|-++..-| |+ +||++|.-+.+. ...-|+|+.|-+.
T Consensus 242 vygR~g~p--C~~~~CG~~I~~~~~~-------------gR~t~~CP~CQ~~ 278 (310)
T 3twl_A 242 FHNREKKP--GKAFVDGKKIDFITAG-------------GRTTAYVPELQKL 278 (310)
T ss_dssp GGGTTSCT--TSCEETTEECEECCE-------------------ECTTTCCC
T ss_pred EeCcCCCC--CCCCCCCCeEEEEEEC-------------CcccEECCCCcCC
Confidence 33444444 66 999998776654 3566778888653
No 264
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.24 E-value=12 Score=16.08 Aligned_cols=13 Identities=23% Similarity=0.815 Sum_probs=8.5
Q ss_pred ceEEee--cccceee
Q 035287 52 KKFYCT--ICSRRLV 64 (68)
Q Consensus 52 rk~~Ct--~C~r~L~ 64 (68)
+.|.|+ .|++...
T Consensus 2 k~~~C~~~~C~k~f~ 16 (32)
T 1zfd_A 2 RPYSCDHPGCDKAFV 16 (32)
T ss_dssp CSBCCCCTTCCCCBS
T ss_pred CCCcCcCCCCCCccC
Confidence 457777 7877653
No 265
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=25.08 E-value=30 Score=23.31 Aligned_cols=28 Identities=25% Similarity=0.631 Sum_probs=19.2
Q ss_pred CCCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccce
Q 035287 19 ADAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRR 62 (68)
Q Consensus 19 A~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~ 62 (68)
..-+||.|.-+|. |... ..|.|..|++.
T Consensus 41 ~Y~ACp~CnKKV~--~~~~--------------g~~~CekC~~~ 68 (172)
T 3u50_C 41 YYYRCTCQGKSVL--KYHG--------------DSFFCESCQQF 68 (172)
T ss_dssp EEEECTTSCCCEE--EETT--------------TEEEETTTTEE
T ss_pred EehhchhhCCEee--eCCC--------------CeEECCCCCCC
Confidence 4668999988886 3222 46778888775
No 266
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=24.98 E-value=16 Score=21.73 Aligned_cols=9 Identities=33% Similarity=1.412 Sum_probs=6.7
Q ss_pred EEeecccce
Q 035287 54 FYCTICSRR 62 (68)
Q Consensus 54 ~~Ct~C~r~ 62 (68)
..||||||.
T Consensus 19 ~~CSFCGK~ 27 (67)
T 1ovx_A 19 LYCSFCGKS 27 (67)
T ss_dssp CCCTTTCCC
T ss_pred cEecCCCCC
Confidence 458999874
No 267
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.76 E-value=24 Score=18.47 Aligned_cols=41 Identities=24% Similarity=0.561 Sum_probs=25.4
Q ss_pred CCCCcCCCCCCceE-EEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 18 GADAACPYCGGPVL-AIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~-a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
.-|-.|+.||-... ..++..+.+. ....+.|.|..|++...
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~------h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRT------HTGEKPYKCDECGKAFI 57 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTT------TCCSCSEECSSSCCEES
T ss_pred CCCEECCCCCcccCCHHHHHHHHHH------cCCCcCeeCCCCCCccC
Confidence 44678999986543 2233333331 23357899999998764
No 268
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.57 E-value=8.1 Score=18.44 Aligned_cols=13 Identities=23% Similarity=0.869 Sum_probs=8.4
Q ss_pred cceEEeeccccee
Q 035287 51 KKKFYCTICSRRL 63 (68)
Q Consensus 51 krk~~Ct~C~r~L 63 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytt_A 10 EKPYQCSECGKSF 22 (46)
T ss_dssp CCTTCCSSSCCCC
T ss_pred CCCeeCCCCCccc
Confidence 4557777777654
No 269
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=24.56 E-value=14 Score=22.12 Aligned_cols=11 Identities=45% Similarity=1.189 Sum_probs=9.1
Q ss_pred CcCCCCCCceE
Q 035287 21 AACPYCGGPVL 31 (68)
Q Consensus 21 G~Cp~CGG~v~ 31 (68)
-.||.||.++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 47999998875
No 270
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.44 E-value=9.8 Score=20.47 Aligned_cols=38 Identities=18% Similarity=0.493 Sum_probs=22.5
Q ss_pred CCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 20 DAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
...|+.||-+|.+-.|+ .+--.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~------a~~~~~-H~~CF~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSGGIT------YQDQPW-HADCFVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTTCEE------ETTEEE-CTTTTBCTTTCCBCT
T ss_pred cCCCcccCCEeCcceEE------ECcccc-ccCcCEECCCCCCCC
Confidence 35799999988531111 111122 234577999998884
No 271
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=24.33 E-value=11 Score=23.75 Aligned_cols=38 Identities=21% Similarity=0.672 Sum_probs=26.3
Q ss_pred CCcCCCCCCceEEEEeccee-eeEEeeeeeeecceEEeecccceee
Q 035287 20 DAACPYCGGPVLAIDFDAHL-RFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~Dves~~-rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
+-.||.||-.+.-.|++.+. .-| -.|...|..|+..+.
T Consensus 110 ~v~C~~C~~~~~r~~l~~H~~~~C-------~~r~~~C~~C~~~~~ 148 (170)
T 3hcs_A 110 LMDCPQCQRPFQKFHINIHILKDC-------PRRQVSCDNCAASMA 148 (170)
T ss_dssp EEECTTTCCEEEGGGHHHHHHHTC-------TTCEEECTTTCCEEE
T ss_pred eeECCCCChHHHHHHHHHHhhhhC-------CCCCeECCCCCCccC
Confidence 44677888887777777766 345 346777888887654
No 272
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.09 E-value=19 Score=19.00 Aligned_cols=19 Identities=32% Similarity=0.838 Sum_probs=13.8
Q ss_pred CCCcCCCCCCceEEEEecc
Q 035287 19 ADAACPYCGGPVLAIDFDA 37 (68)
Q Consensus 19 A~G~Cp~CGG~v~a~Dves 37 (68)
....||.|+..+..-|+..
T Consensus 42 ~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 42 GAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TSSSCTTTCCCCSSCCCEE
T ss_pred CCCcCCCCCCcccccccee
Confidence 3568999999887666543
No 273
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=23.99 E-value=61 Score=21.28 Aligned_cols=17 Identities=35% Similarity=0.814 Sum_probs=13.4
Q ss_pred CCCcCCCCCCceEEEEe
Q 035287 19 ADAACPYCGGPVLAIDF 35 (68)
Q Consensus 19 A~G~Cp~CGG~v~a~Dv 35 (68)
..+.||.||+....++-
T Consensus 102 ~~~~c~~~g~~~~~~e~ 118 (166)
T 3ir9_A 102 AAGNCPKCGSSLEVTDV 118 (166)
T ss_dssp CCCBCTTTCCBEEEEEE
T ss_pred ccccccccCccchhhhH
Confidence 45689999999877653
No 274
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=23.57 E-value=25 Score=18.53 Aligned_cols=40 Identities=28% Similarity=0.603 Sum_probs=21.3
Q ss_pred CCCcCCCCCCceEE-EEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 19 ADAACPYCGGPVLA-IDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 19 A~G~Cp~CGG~v~a-~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
.+-.|+.||-...- .++....+ .....+.|.|+.|++...
T Consensus 33 ~~~~C~~C~~~f~~~~~l~~H~~------~h~~~~~~~C~~C~~~f~ 73 (90)
T 1a1h_A 33 KPFQCRICMRNFSRSDHLTTHIR------THTGEKPFACDICGRKFA 73 (90)
T ss_dssp CCEECTTTCCEESCHHHHHHHHH------HHHCCCCEECTTTCCEES
T ss_pred CCccCCCCCcccCCHHHHHHHHH------HcCCCCCccCCCCCchhC
Confidence 34578888754321 12222221 122346788888888754
No 275
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=23.45 E-value=53 Score=23.36 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=13.9
Q ss_pred cCCCCCCc--eEEEEecceeee
Q 035287 22 ACPYCGGP--VLAIDFDAHLRF 41 (68)
Q Consensus 22 ~Cp~CGG~--v~a~Dves~~rf 41 (68)
.||.||+. -.+.|-++.-.+
T Consensus 23 ~CPECGs~~t~IV~D~erGE~V 44 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVV 44 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEE
T ss_pred ECcCCCCcCCeEEEeCCCCEEE
Confidence 79999993 456676665544
No 276
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.30 E-value=28 Score=23.85 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=12.8
Q ss_pred ecceEEeecccceeee
Q 035287 50 VKKKFYCTICSRRLVP 65 (68)
Q Consensus 50 ~krk~~Ct~C~r~L~~ 65 (68)
.+.-+.|+.|||.|+.
T Consensus 219 ~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 219 SGDMITCPYCGRILYA 234 (256)
T ss_dssp SSSCEECTTTCCEEEC
T ss_pred CCCEEECCCCCeeEEe
Confidence 3456999999999974
No 277
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.03 E-value=10 Score=24.14 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=9.8
Q ss_pred eecCCCCcCCCCCCceEE
Q 035287 15 RRNGADAACPYCGGPVLA 32 (68)
Q Consensus 15 ~~~~A~G~Cp~CGG~v~a 32 (68)
|+.+....|..||..|..
T Consensus 1 ~~~~~~~~C~~C~~~I~~ 18 (169)
T 2rgt_A 1 GSTPEIPMCAGCDQHILD 18 (169)
T ss_dssp ------CBBSSSSSBCCS
T ss_pred CCCCCCCccccCCCccCC
Confidence 345566789999988863
No 278
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.98 E-value=7.9 Score=23.52 Aligned_cols=37 Identities=16% Similarity=0.377 Sum_probs=21.9
Q ss_pred CcCCCCCCceEEEEec-ceeeeEEeeeeeeecceEEeeccccee
Q 035287 21 AACPYCGGPVLAIDFD-AHLRFCFLPISHKVKKKFYCTICSRRL 63 (68)
Q Consensus 21 G~Cp~CGG~v~a~Dve-s~~rfCflP~~~k~krk~~Ct~C~r~L 63 (68)
..|+.||..|...|.- ....- .| ++.=|.|+.|++.|
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~-----~~-H~~CF~C~~C~~~L 46 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDK-----VY-HLECFKCAACQKHF 46 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSC-----CC-CTTTCBCTTTCCBC
T ss_pred CcccCCCCeecCCceEEEECCc-----cc-ccccCccccCCCCC
Confidence 3799999998864421 11111 11 23456788888887
No 279
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=22.77 E-value=42 Score=23.02 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=7.5
Q ss_pred CcCCCCCCc
Q 035287 21 AACPYCGGP 29 (68)
Q Consensus 21 G~Cp~CGG~ 29 (68)
-.||.|||+
T Consensus 148 p~C~~Cgg~ 156 (253)
T 1ma3_A 148 PRCRKCGSY 156 (253)
T ss_dssp CCCTTTCCS
T ss_pred CCCCCCCCc
Confidence 489999993
No 280
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=22.75 E-value=23 Score=22.70 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=12.5
Q ss_pred CCcCCCCCCceEEEEe
Q 035287 20 DAACPYCGGPVLAIDF 35 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~Dv 35 (68)
.-.||+||-.|+|.-.
T Consensus 70 ~~~C~nC~R~vaa~RF 85 (99)
T 3mhs_C 70 YIHCENCGRDVSANRL 85 (99)
T ss_dssp EEECTTTCCEEEGGGH
T ss_pred eEECCCCCCCchhhhh
Confidence 3479999999987644
No 281
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=22.53 E-value=38 Score=27.28 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=12.6
Q ss_pred CCCCcCCCCCCceEE
Q 035287 18 GADAACPYCGGPVLA 32 (68)
Q Consensus 18 ~A~G~Cp~CGG~v~a 32 (68)
..|-.||.||..+.-
T Consensus 403 ~~P~~CP~Cgs~l~~ 417 (671)
T 2owo_A 403 VFPTHCPVCGSDVER 417 (671)
T ss_dssp CCCSBCTTTCCBEEE
T ss_pred cCCCCCCCCCCEeEE
Confidence 468999999998864
No 282
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=22.52 E-value=13 Score=22.31 Aligned_cols=18 Identities=33% Similarity=0.696 Sum_probs=13.8
Q ss_pred eeeeecCCCCcCCCCCCc
Q 035287 12 KVIRRNGADAACPYCGGP 29 (68)
Q Consensus 12 kv~~~~~A~G~Cp~CGG~ 29 (68)
|+.-+|.+.-.||.||..
T Consensus 19 kie~~q~~ky~C~fCgk~ 36 (73)
T 1ffk_W 19 DVEIKHKKKYKCPVCGFP 36 (73)
T ss_pred HHHHhcccCccCCCCCCc
Confidence 344578899999999863
No 283
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=22.37 E-value=27 Score=20.51 Aligned_cols=15 Identities=33% Similarity=0.709 Sum_probs=10.5
Q ss_pred CCCcCCCCCCceEEE
Q 035287 19 ADAACPYCGGPVLAI 33 (68)
Q Consensus 19 A~G~Cp~CGG~v~a~ 33 (68)
..|.||||=-...++
T Consensus 27 p~gqCPYC~~~~e~t 41 (57)
T 2k9h_A 27 INGQCPYCMTITEAT 41 (57)
T ss_dssp TTTBCTTTCCBCCSS
T ss_pred CCCCCCcccCcCCcC
Confidence 368999997655443
No 284
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=22.05 E-value=33 Score=25.34 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=9.3
Q ss_pred CCcCCCCCCceE
Q 035287 20 DAACPYCGGPVL 31 (68)
Q Consensus 20 ~G~Cp~CGG~v~ 31 (68)
+-.||.|||.+.
T Consensus 171 ~P~Cp~Cgg~lr 182 (361)
T 1q14_A 171 FVKCDVCGELVK 182 (361)
T ss_dssp CCBCTTTCCBEE
T ss_pred CCCCcCCCCEeC
Confidence 358999999753
No 285
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=21.98 E-value=16 Score=20.08 Aligned_cols=14 Identities=43% Similarity=1.087 Sum_probs=7.0
Q ss_pred ecceEEeeccccee
Q 035287 50 VKKKFYCTICSRRL 63 (68)
Q Consensus 50 ~krk~~Ct~C~r~L 63 (68)
.++.|.|..|++..
T Consensus 14 ~~~~~~C~~C~~~f 27 (106)
T 2ee8_A 14 TKKEFICKFCGRHF 27 (106)
T ss_dssp CCCCCBCSSSCCBC
T ss_pred CCcCeECCCCCCcc
Confidence 34445555555543
No 286
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=21.91 E-value=30 Score=18.16 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=10.2
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|+.|++...
T Consensus 63 ~~~~~C~~C~~~f~ 76 (89)
T 2wbs_A 63 HRPFQCQKCDRAFS 76 (89)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCccCCCCCcccC
Confidence 45688888887654
No 287
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=21.88 E-value=34 Score=22.73 Aligned_cols=14 Identities=14% Similarity=0.475 Sum_probs=11.9
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.++++|+.||..|-
T Consensus 96 ~~r~FC~~CGs~l~ 109 (196)
T 1x6m_A 96 IQRHRCRDCGVHMY 109 (196)
T ss_dssp EEEEEETTTCCEEE
T ss_pred eeeEECCCCCCcCC
Confidence 47899999999873
No 288
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.83 E-value=35 Score=16.87 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=11.4
Q ss_pred ecceEEeec--ccceee
Q 035287 50 VKKKFYCTI--CSRRLV 64 (68)
Q Consensus 50 ~krk~~Ct~--C~r~L~ 64 (68)
..|+|.|+. |++...
T Consensus 6 gekp~~C~~~~C~k~F~ 22 (38)
T 2eln_A 6 SGILLKCPTDGCDYSTP 22 (38)
T ss_dssp CCCCEECSSSSCCCEES
T ss_pred CCCCCCCCCCCCCCccC
Confidence 467899986 998754
No 289
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=21.77 E-value=28 Score=17.87 Aligned_cols=14 Identities=21% Similarity=0.743 Sum_probs=10.3
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 55 ~~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 55 EKPHKCQVCGKAFS 68 (82)
T ss_dssp CCCEECTTTSCEES
T ss_pred CCCCcCCCcchhhC
Confidence 45688888887654
No 290
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=21.54 E-value=25 Score=27.72 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=12.6
Q ss_pred eecCCCCcCCCCC-CceEE
Q 035287 15 RRNGADAACPYCG-GPVLA 32 (68)
Q Consensus 15 ~~~~A~G~Cp~CG-G~v~a 32 (68)
.++...|.||.|| |.+..
T Consensus 567 ~k~g~~G~CP~Cg~g~l~~ 585 (633)
T 2gai_A 567 LSFGKYGFYLKCECGKTRS 585 (633)
T ss_dssp EEEETTEEEEECSSSCCEE
T ss_pred ecccccccCcccCCCccee
Confidence 3444678899999 77654
No 291
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.46 E-value=19 Score=19.31 Aligned_cols=39 Identities=21% Similarity=0.459 Sum_probs=22.1
Q ss_pred CCcCCCCCCceEEEEecceeeeEEeeeeeeecceEEeecccceeee
Q 035287 20 DAACPYCGGPVLAIDFDAHLRFCFLPISHKVKKKFYCTICSRRLVP 65 (68)
Q Consensus 20 ~G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (68)
...|+.||..|... + +=.+--.| +..=|.|+.|++.|..
T Consensus 5 ~~~C~~C~~~I~~~-~-----~~a~~~~~-H~~CF~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIGR-V-----IKAMNNSW-HPECFRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCSC-C-----EEETTEEE-CTTTSBCSSSCCBCSS
T ss_pred CCcCccCCCEecce-E-----EEECcccc-cccCCEeCCCCCcCCC
Confidence 35799999988621 1 10111111 2344788889888753
No 292
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.32 E-value=30 Score=20.56 Aligned_cols=41 Identities=20% Similarity=0.385 Sum_probs=23.1
Q ss_pred CCCcCCCCCCceEE-EEecceeeeEEeeeee---eecceEEeecccceee
Q 035287 19 ADAACPYCGGPVLA-IDFDAHLRFCFLPISH---KVKKKFYCTICSRRLV 64 (68)
Q Consensus 19 A~G~Cp~CGG~v~a-~Dves~~rfCflP~~~---k~krk~~Ct~C~r~L~ 64 (68)
-|-.|+.||-...- .++....+. .. ...++|.|+.||+...
T Consensus 17 kpy~C~~Cgk~F~~~~~L~~H~r~-----~H~~~~~ekpf~C~~Cgk~F~ 61 (102)
T 2ghf_A 17 GGYECKYCTFQTPDLNMFTFHVDS-----EHPNVVLNSSYVCVECNFLTK 61 (102)
T ss_dssp SSEECSSCSCEESCHHHHHHHHHH-----HCSSCCCSCCEEETTTTEEES
T ss_pred cCcCCCCCCCccCCHHHHHHHHHh-----hCCCCCCCCCcCCCCCCcccC
Confidence 45679999865421 112222110 01 2357899999998764
No 293
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=21.06 E-value=36 Score=24.55 Aligned_cols=11 Identities=27% Similarity=0.609 Sum_probs=8.8
Q ss_pred CCcCCCCCCce
Q 035287 20 DAACPYCGGPV 30 (68)
Q Consensus 20 ~G~Cp~CGG~v 30 (68)
.-.||.|||.+
T Consensus 185 ~P~C~~Cgg~l 195 (323)
T 1j8f_A 185 TPKCEDCQSLV 195 (323)
T ss_dssp CCBCTTTCCBE
T ss_pred CCCCcCCCCcc
Confidence 34899999965
No 294
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.02 E-value=32 Score=18.35 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=9.3
Q ss_pred cceEEeecccceee
Q 035287 51 KKKFYCTICSRRLV 64 (68)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (68)
.+.|.|..|++...
T Consensus 62 ~~~~~C~~C~~~f~ 75 (96)
T 2dmd_A 62 ERPFKCQICPYASR 75 (96)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCccCCCCCCccC
Confidence 45677777776653
No 295
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=21.01 E-value=23 Score=21.85 Aligned_cols=8 Identities=50% Similarity=1.456 Sum_probs=6.5
Q ss_pred cCCCCCCc
Q 035287 22 ACPYCGGP 29 (68)
Q Consensus 22 ~Cp~CGG~ 29 (68)
.||+||..
T Consensus 37 ~CPnCgs~ 44 (81)
T 3p8b_A 37 RCPVCGSR 44 (81)
T ss_dssp SCTTTCCC
T ss_pred CCCCCCCC
Confidence 49999973
No 296
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.21 E-value=33 Score=19.76 Aligned_cols=38 Identities=26% Similarity=0.602 Sum_probs=22.8
Q ss_pred CcCCCCCCceE-EEEecceeeeEEeeeeeeecceEEeecccceee
Q 035287 21 AACPYCGGPVL-AIDFDAHLRFCFLPISHKVKKKFYCTICSRRLV 64 (68)
Q Consensus 21 G~Cp~CGG~v~-a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (68)
-.|+.||-.-. ..+++...|. .-..++|.|..|++...
T Consensus 29 h~C~~Cgk~F~~~~~L~~H~~~------H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 29 HLCPVCGESFASKGAQERHLRL------LHAAQVFPCKYCPATFY 67 (85)
T ss_dssp EECTTSCCEESSHHHHHHHHHT------TSCSSSEECTTSSCEES
T ss_pred EECCCCCCCcCcHHHHhhhhhh------ccCCCccCCCCCCCEeC
Confidence 46888886532 2333333331 12356899999998764
Done!