BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035290
(68 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 41 LNVVALGNVGAGKSAVLNSLIGHPVLVS 68
L +V +G GAGKSA NS++G V S
Sbjct: 30 LRIVLVGKTGAGKSATGNSILGRKVFHS 57
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 41 LNVVALGNVGAGKSAVLNSLIGHPVL 66
+ V+ LG G GKS+ +NSLIG V+
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVV 62
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 41 LNVVALGNVGAGKSAVLNSLIGHPVL 66
+ V+ LG G GKS+ +NSLIG V+
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVV 62
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 41 LNVVALGNVGAGKSAVLNSLIGHPVL 66
+ V+ LG G GKS+ +NSLIG V+
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVV 62
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 41 LNVVALGNVGAGKSAVLNSLIGHPVL 66
+ V+ LG G GKS+ +NSLIG V+
Sbjct: 36 MTVLVLGKGGVGKSSTVNSLIGEQVV 61
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 39 TFLNVVALGNVGAGKSAVLNSLIG 62
+ LNV G G+GKS+ +N+L G
Sbjct: 68 SVLNVAVTGETGSGKSSFINTLRG 91
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 39 TFLNVVALGNVGAGKSAVLNSLIG 62
+ LNV G G+GKS+ +N+L G
Sbjct: 68 SVLNVAVTGETGSGKSSFINTLRG 91
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 39 TFLNVVALGNVGAGKSAVLNSLIG 62
+ LNV G G+GKS+ +N+L G
Sbjct: 68 SVLNVAVTGETGSGKSSFINTLRG 91
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 41 LNVVALGNVGAGKSAVLNSLIGHPVL 66
L ++ +G G GKS+ +NS+IG V+
Sbjct: 40 LTILVMGKGGVGKSSTVNSIIGERVV 65
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 39 TFLNVVALGNVGAGKSAVLNSLIG 62
+ LNV G G+GKS+ +N+L G
Sbjct: 68 SVLNVAVTGETGSGKSSFINTLRG 91
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 41 LNVVALGNVGAGKSAVLNSLIGHPVL 66
L ++ G G GKS+ +NS+IG V+
Sbjct: 40 LTILVXGKGGVGKSSTVNSIIGERVV 65
>pdb|2J68|A Chain A, Bacterial Dynamin-Like Protein Bdlp, Gdp Bound
pdb|2J69|A Chain A, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|B Chain B, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|C Chain C, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|D Chain D, Bacterial Dynamin-like Protein Bdlp
pdb|2W6D|A Chain A, Bacterial Dynamin-Like Protein Lipid Tube Bound
pdb|2W6D|B Chain B, Bacterial Dynamin-Like Protein Lipid Tube Bound
Length = 695
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 23 DEDVDENXXXXXXXXXTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68
+ D+++ ++ LG++ GKS LN+LIG +L S
Sbjct: 52 ERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPS 97
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 43 VVALGNVGAGKSAVLNSLIGH 63
++ +G GAGKSA NS++G
Sbjct: 24 LILVGRTGAGKSATGNSILGQ 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.129 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,266,974
Number of Sequences: 62578
Number of extensions: 25773
Number of successful extensions: 138
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 15
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)