BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035290
(68 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SE83|DRP2A_ARATH Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2
Length = 914
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/66 (84%), Positives = 62/66 (93%), Gaps = 2/66 (3%)
Query: 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSL 60
MEAI+ELSQLSDSM+QAA+LLADED DE +SSS+R +TFLNVVALGNVGAGKSAVLNSL
Sbjct: 1 MEAIDELSQLSDSMKQAASLLADEDPDE--TSSSKRPATFLNVVALGNVGAGKSAVLNSL 58
Query: 61 IGHPVL 66
IGHPVL
Sbjct: 59 IGHPVL 64
>sp|Q9LQ55|DRP2B_ARATH Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2
Length = 920
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/68 (83%), Positives = 62/68 (91%), Gaps = 2/68 (2%)
Query: 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSL 60
MEAI+ELSQLSDSMRQAA+LLADED DE +SSSRR +T LNVVALGNVGAGKSAVLNSL
Sbjct: 1 MEAIDELSQLSDSMRQAASLLADEDPDE--TSSSRRPATSLNVVALGNVGAGKSAVLNSL 58
Query: 61 IGHPVLVS 68
IGHPVL +
Sbjct: 59 IGHPVLPT 66
>sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2
SV=1
Length = 688
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64
EE SQ+ + Q +++ N+ R LN++ LG G GKSA N+++G P
Sbjct: 443 EEQSQVGKLLSQIESVVQHH----NNKPCVIREKELLNIILLGRSGVGKSATGNTILGRP 498
Query: 65 VLVS 68
VS
Sbjct: 499 AFVS 502
>sp|A5EI59|DER_BRASB GTPase Der OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=der PE=3 SV=1
Length = 456
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64
E + +L D++R DE VDE+ + R++ + V +G AGKS ++N L+G
Sbjct: 150 EGMGELYDALRGLVPETEDE-VDEHEETDEERAARPIRVAIVGRPNAGKSTLINHLLGEE 208
Query: 65 VLVS 68
L++
Sbjct: 209 RLLT 212
>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis
thaliana GN=TOC90 PE=1 SV=1
Length = 793
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 41 LNVVALGNVGAGKSAVLNSLIGHP 64
L ++ LG G GKSA +NS+ G P
Sbjct: 167 LRILVLGKTGVGKSATINSIFGQP 190
>sp|A6WX76|MNME_OCHA4 tRNA modification GTPase MnmE OS=Ochrobactrum anthropi (strain ATCC
49188 / DSM 6882 / NCTC 12168) GN=mnmE PE=3 SV=1
Length = 442
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 10 LSDSMRQAAALLADEDVDENSSSSSRRSSTF---LNVVALGNVGAGKSAVLNSLIGHPVL 66
+S+ + Q+ ALL E EN +S +R+S L+VV +G AGKS++LN L G V
Sbjct: 190 VSEQVWQSLALLKSEI--ENHIASGKRASMLRDGLHVVIVGAPNAGKSSLLNFLAGREVA 247
Query: 67 V 67
+
Sbjct: 248 I 248
>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis
thaliana GN=TOC159 PE=1 SV=1
Length = 1503
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 41 LNVVALGNVGAGKSAVLNSLIGHPV 65
LN++ LG G GKSA +NS++G+ +
Sbjct: 856 LNILVLGKAGVGKSATINSILGNQI 880
>sp|Q8STS8|CDC11_ENCCU Cell division control protein 11 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=CDC11 PE=1 SV=1
Length = 303
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68
RR + ++A G G+GKS+ NSLIG ++ S
Sbjct: 40 RRQNRRFTIMAAGPRGSGKSSFFNSLIGKEIVTS 73
>sp|B5X2B8|ERAL1_SALSA GTPase Era, mitochondrial OS=Salmo salar GN=eral1 PE=2 SV=1
Length = 457
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 8 SQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66
S L DS Q + L+ D D ENS L V +G AGKS + N L+G V
Sbjct: 84 SVLPDSAEQLSLLVKDPDQPENSK--------VLRVAIIGAPNAGKSTLSNQLLGRKVF 134
>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2
SV=1
Length = 310
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 26 VDENSSSSSR-----RSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68
+ ENS SS + S L +V LG GAGKS+ NS++G +S
Sbjct: 11 IPENSRSSHELGIQDQGSPQLRIVLLGKTGAGKSSTGNSILGRKAFLS 58
>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1
Length = 307
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 41 LNVVALGNVGAGKSAVLNSLIGHPVLVS 68
L ++ +G G GKSA NS++G PV S
Sbjct: 28 LRIILVGKTGCGKSATGNSILGQPVFES 55
>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1
Length = 688
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 36 RSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68
R LN++ LG GAGKSA N+++G S
Sbjct: 471 REKELLNIILLGRSGAGKSATGNTILGRSAFFS 503
>sp|Q11KI3|DER_MESSB GTPase Der OS=Mesorhizobium sp. (strain BNC1) GN=der PE=3 SV=1
Length = 470
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 21 LADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68
L ED+D +S + + + + +G GKS ++N+LIG L++
Sbjct: 179 LIGEDIDPDSEEARYDPTKPIRIAVVGRPNVGKSTLINALIGEERLLT 226
>sp|Q7TSA0|MIRO2_RAT Mitochondrial Rho GTPase 2 OS=Rattus norvegicus GN=Rhot2 PE=2 SV=1
Length = 622
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 12 DSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63
DS QA + ++ +D+ + R + L LG G GKSA L + +GH
Sbjct: 392 DSQAQAITVTREKRLDQEKGQTQR---SVLMCKVLGARGVGKSAFLQAFLGH 440
>sp|P48008|SPN3_SCHPO Septin homolog spn3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=spn3 PE=1 SV=3
Length = 412
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66
++ S + LN++ +G+VG G++A +N+L P++
Sbjct: 42 TTKKSSKKGIPLNLMVVGDVGLGRTAFINTLCEKPLI 78
>sp|A6Q4R8|DER_NITSB GTPase Der OS=Nitratiruptor sp. (strain SB155-2) GN=der PE=3 SV=1
Length = 462
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 23 DEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61
DE + N + S +NV LG V GKS++LN+L+
Sbjct: 177 DELLAINEGEKKQEESNEINVAILGRVNVGKSSLLNALL 215
>sp|P87320|MSP1_SCHPO Protein msp1, mitochondrial OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=msp1 PE=3 SV=2
Length = 903
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 24 EDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66
+D+ +N+S+ T ++V +G+ +GKS+VL +++GH L
Sbjct: 252 QDIQDNNSAV-----TLPSIVVIGSQSSGKSSVLEAIVGHEFL 289
>sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1
Length = 292
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 28 ENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68
E + RR L ++ +G G+GKSA NS++G V S
Sbjct: 32 EKEQKTPRR----LRLILMGKTGSGKSATGNSILGRDVFES 68
>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2
Length = 665
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 12 DSMRQAAALLADEDVDENSSSSSRRSSTF-----LNVVALGNVGAGKSAVLNSLIGHPVL 66
+ RQA LL E ++ + + F LN+V +G G GKSA NS++G V
Sbjct: 407 EEQRQADELL--EKIESMVHQNGNKHCVFREKETLNIVLVGRSGTGKSATGNSILGSLVF 464
Query: 67 VS 68
S
Sbjct: 465 TS 466
>sp|A1S1G4|MNME_SHEAM tRNA modification GTPase MnmE OS=Shewanella amazonensis (strain
ATCC BAA-1098 / SB2B) GN=mnmE PE=3 SV=1
Length = 453
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTF---LNVVALGNVGAGKSAVLNSLI 61
EE+ LSD + AAAL A D + +S+++ S + VV G AGKS++LN+L
Sbjct: 178 EEVDFLSDG-KIAAALYAIIDQLDEVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALA 236
Query: 62 G 62
G
Sbjct: 237 G 237
>sp|Q39ZT0|MNME_PELCD tRNA modification GTPase MnmE OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=mnmE PE=3 SV=2
Length = 456
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 17 AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63
A AL+AD D ++ S R L V+ G GKS+++N L+G
Sbjct: 197 AGALIADMDRIIDTFESGRVLREGLRVLIFGKPNVGKSSLMNGLLGE 243
>sp|Q5NKZ8|MNME_ZYMMO tRNA modification GTPase MnmE OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=mnmE PE=3 SV=1
Length = 434
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 2 EAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61
E+ + L+ + D + AAL+A+ EN + R L VV G AGKS ++N+L
Sbjct: 185 ESRQHLAVMKDKI---AALIAEHRQFENRPTMERLRDG-LRVVLAGRPNAGKSTLINALT 240
Query: 62 GHPVLVS 68
G + ++
Sbjct: 241 GQDIAIT 247
>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1
Length = 219
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 41 LNVVALGNVGAGKSAVLNSLIGHPVLVS 68
L +V LG GAGKS+ NS++G V S
Sbjct: 31 LRIVLLGKTGAGKSSTGNSILGEKVFNS 58
>sp|Q96UX5|HSP78_CANAL Heat shock protein 78, mitochondrial OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=HSP78 PE=3 SV=1
Length = 812
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 6 ELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSL 60
+L+QL+ + + D ++ SRR+ N V +GN G GK+AV+ L
Sbjct: 94 DLTQLAKEGKLDPVIGRDHEIRRTIQILSRRTKN--NPVLIGNAGTGKTAVMEGL 146
>sp|Q3AFV0|HFLX_CARHZ GTPase HflX OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
DSM 6008) GN=hflX PE=3 SV=1
Length = 414
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 6 ELSQLSDSMRQAAALLADE--DVDENSS-SSSRRSSTFLNVVAL-GNVGAGKSAVLNSLI 61
+L L ++R+ A L E ++++N SRR + +VAL G AGKS +LN+L
Sbjct: 152 KLEVLRRTIRKRIAELRRELKEIEQNRKVKRSRRLEAGVPIVALVGYTNAGKSTLLNALT 211
Query: 62 GHPVL 66
G VL
Sbjct: 212 GAGVL 216
>sp|Q9SKX0|AB13C_ARATH ABC transporter C family member 13 OS=Arabidopsis thaliana
GN=ABCC13 PE=2 SV=3
Length = 1410
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 23 DEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62
+ED + S R V +G VG+GK+++LNSL+G
Sbjct: 578 EEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLG 617
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.121 0.300
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,517,604
Number of Sequences: 539616
Number of extensions: 561296
Number of successful extensions: 4647
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 4592
Number of HSP's gapped (non-prelim): 149
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)