Query 035290
Match_columns 68
No_of_seqs 164 out of 1541
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 10:42:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3842 PotA ABC-type spermidi 99.8 1.2E-19 2.7E-24 129.2 7.8 57 2-68 3-59 (352)
2 COG1126 GlnQ ABC-type polar am 99.8 1.7E-19 3.8E-24 122.7 7.3 56 3-68 1-56 (240)
3 COG3839 MalK ABC-type sugar tr 99.8 2.3E-19 5E-24 127.3 7.7 56 3-68 2-57 (338)
4 COG1116 TauB ABC-type nitrate/ 99.8 2.7E-19 5.8E-24 122.8 7.7 56 3-68 2-57 (248)
5 COG1120 FepC ABC-type cobalami 99.8 5.6E-19 1.2E-23 121.7 7.8 56 3-68 1-56 (258)
6 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 9.3E-19 2E-23 120.4 7.7 58 1-68 1-58 (254)
7 PRK10584 putative ABC transpor 99.8 3.7E-18 8.1E-23 112.5 8.2 59 1-68 3-64 (228)
8 PRK13537 nodulation ABC transp 99.8 2.9E-18 6.4E-23 118.8 8.1 58 1-68 4-61 (306)
9 COG3638 ABC-type phosphate/pho 99.8 2.6E-18 5.7E-23 118.0 7.7 58 2-68 1-58 (258)
10 PRK09544 znuC high-affinity zi 99.8 3.7E-18 8.1E-23 115.4 8.2 58 1-68 1-58 (251)
11 PRK13647 cbiO cobalt transport 99.8 3.8E-18 8.2E-23 116.3 8.1 59 1-68 1-59 (274)
12 PRK14267 phosphate ABC transpo 99.8 3.9E-18 8.6E-23 114.0 7.7 57 1-67 1-57 (253)
13 TIGR00960 3a0501s02 Type II (G 99.8 4.4E-18 9.5E-23 111.4 7.8 56 4-68 1-57 (216)
14 COG1131 CcmA ABC-type multidru 99.7 4.3E-18 9.3E-23 117.9 7.7 59 1-68 1-59 (293)
15 PRK09984 phosphonate/organopho 99.7 6.3E-18 1.4E-22 113.9 8.0 57 1-67 1-57 (262)
16 PRK11701 phnK phosphonate C-P 99.7 6.5E-18 1.4E-22 113.6 8.0 58 1-68 3-60 (258)
17 TIGR02673 FtsE cell division A 99.7 5.4E-18 1.2E-22 110.7 7.3 56 4-68 1-56 (214)
18 PRK10895 lipopolysaccharide AB 99.7 8.3E-18 1.8E-22 111.8 8.0 56 3-68 2-57 (241)
19 cd03296 ABC_CysA_sulfate_impor 99.7 9.1E-18 2E-22 111.7 8.1 55 4-68 2-56 (239)
20 PRK11264 putative amino-acid A 99.7 7.6E-18 1.6E-22 112.3 7.7 55 4-68 3-57 (250)
21 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 7.8E-18 1.7E-22 110.2 7.3 55 5-68 1-58 (218)
22 cd03261 ABC_Org_Solvent_Resist 99.7 8.2E-18 1.8E-22 111.5 7.5 54 5-68 1-54 (235)
23 PRK13633 cobalt transporter AT 99.7 9.1E-18 2E-22 114.6 7.9 59 1-68 1-64 (280)
24 PRK10247 putative ABC transpor 99.7 9.3E-18 2E-22 111.1 7.7 57 2-68 5-61 (225)
25 PRK11629 lolD lipoprotein tran 99.7 1.2E-17 2.7E-22 110.7 8.2 57 3-68 4-63 (233)
26 cd03265 ABC_DrrA DrrA is the A 99.7 8.5E-18 1.8E-22 110.5 7.3 54 5-68 1-54 (220)
27 TIGR01288 nodI ATP-binding ABC 99.7 1.1E-17 2.3E-22 115.4 8.1 56 3-68 3-58 (303)
28 PRK14249 phosphate ABC transpo 99.7 1.2E-17 2.6E-22 111.8 7.9 57 1-67 1-57 (251)
29 PRK13536 nodulation factor exp 99.7 1.2E-17 2.6E-22 117.7 8.3 56 3-68 40-95 (340)
30 cd03257 ABC_NikE_OppD_transpor 99.7 9.6E-18 2.1E-22 110.1 7.3 56 4-68 1-59 (228)
31 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 1.2E-17 2.6E-22 110.9 7.8 55 4-68 1-55 (236)
32 PRK11248 tauB taurine transpor 99.7 1.1E-17 2.5E-22 112.9 7.8 55 4-68 1-55 (255)
33 PRK11831 putative ABC transpor 99.7 1.4E-17 3.1E-22 112.9 8.2 56 3-68 6-61 (269)
34 PRK13540 cytochrome c biogenes 99.7 1.4E-17 3E-22 108.5 7.8 55 4-68 1-55 (200)
35 PRK10908 cell division protein 99.7 1.2E-17 2.7E-22 109.9 7.6 56 4-68 1-56 (222)
36 PRK13538 cytochrome c biogenes 99.7 1.4E-17 2.9E-22 108.8 7.7 55 4-68 1-55 (204)
37 TIGR02315 ABC_phnC phosphonate 99.7 8.6E-18 1.9E-22 111.5 6.9 56 4-68 1-56 (243)
38 COG1136 SalX ABC-type antimicr 99.7 9.2E-18 2E-22 113.9 7.1 56 4-68 1-59 (226)
39 PRK13539 cytochrome c biogenes 99.7 1.8E-17 3.9E-22 108.6 8.2 55 4-68 2-56 (207)
40 PRK10762 D-ribose transporter 99.7 1.2E-17 2.5E-22 121.3 8.0 58 1-68 1-58 (501)
41 PRK14241 phosphate transporter 99.7 1.4E-17 3E-22 112.0 7.7 56 1-66 1-56 (258)
42 cd03224 ABC_TM1139_LivF_branch 99.7 1.1E-17 2.5E-22 109.5 7.1 54 5-68 1-54 (222)
43 PRK14272 phosphate ABC transpo 99.7 1.5E-17 3.2E-22 111.1 7.7 57 1-67 1-57 (252)
44 cd03258 ABC_MetN_methionine_tr 99.7 1.1E-17 2.4E-22 110.6 7.1 56 4-68 1-59 (233)
45 cd03292 ABC_FtsE_transporter F 99.7 1.3E-17 2.9E-22 108.7 7.3 55 5-68 1-55 (214)
46 cd03266 ABC_NatA_sodium_export 99.7 1.3E-17 2.8E-22 109.2 7.3 56 4-68 1-59 (218)
47 PRK13652 cbiO cobalt transport 99.7 1.5E-17 3.3E-22 113.3 7.9 57 3-68 2-58 (277)
48 cd03259 ABC_Carb_Solutes_like 99.7 1.3E-17 2.9E-22 109.0 7.0 54 5-68 1-54 (213)
49 PRK14250 phosphate ABC transpo 99.7 2.1E-17 4.7E-22 110.3 8.1 56 3-68 2-57 (241)
50 cd03218 ABC_YhbG The ABC trans 99.7 1.4E-17 3E-22 109.9 7.0 54 5-68 1-54 (232)
51 TIGR03411 urea_trans_UrtD urea 99.7 2.2E-17 4.8E-22 109.6 8.0 56 3-68 1-56 (242)
52 PRK09452 potA putrescine/sperm 99.7 2.1E-17 4.5E-22 118.0 8.3 58 1-68 11-68 (375)
53 COG1125 OpuBA ABC-type proline 99.7 7E-18 1.5E-22 117.6 5.7 55 4-68 1-55 (309)
54 cd03216 ABC_Carb_Monos_I This 99.7 2.1E-17 4.6E-22 105.3 7.5 54 5-68 1-54 (163)
55 cd03269 ABC_putative_ATPase Th 99.7 2E-17 4.3E-22 107.9 7.5 54 5-68 1-54 (210)
56 PRK11231 fecE iron-dicitrate t 99.7 2.5E-17 5.3E-22 110.6 8.1 55 4-68 2-56 (255)
57 cd03262 ABC_HisP_GlnQ_permease 99.7 1.7E-17 3.8E-22 108.1 7.2 54 5-68 1-54 (213)
58 cd03263 ABC_subfamily_A The AB 99.7 1.7E-17 3.8E-22 108.7 7.2 55 5-68 1-56 (220)
59 PRK11124 artP arginine transpo 99.7 2.4E-17 5.3E-22 109.6 8.0 55 4-68 2-56 (242)
60 PRK15056 manganese/iron transp 99.7 2.4E-17 5.1E-22 112.0 8.0 57 3-68 5-61 (272)
61 PRK11300 livG leucine/isoleuci 99.7 2.4E-17 5.2E-22 110.2 7.9 56 3-68 4-59 (255)
62 TIGR02323 CP_lyasePhnK phospho 99.7 2.2E-17 4.8E-22 110.4 7.7 56 3-68 2-57 (253)
63 PRK13638 cbiO cobalt transport 99.7 1.4E-17 3E-22 112.9 6.8 55 4-68 1-55 (271)
64 TIGR02211 LolD_lipo_ex lipopro 99.7 2.5E-17 5.5E-22 108.0 7.8 56 4-68 1-59 (221)
65 TIGR03410 urea_trans_UrtE urea 99.7 2E-17 4.3E-22 109.2 7.3 54 5-68 1-54 (230)
66 PRK13636 cbiO cobalt transport 99.7 2.5E-17 5.5E-22 112.6 8.0 57 3-68 4-60 (283)
67 PRK11614 livF leucine/isoleuci 99.7 2.5E-17 5.5E-22 109.3 7.8 56 3-68 4-59 (237)
68 PRK13644 cbiO cobalt transport 99.7 1.9E-17 4.1E-22 112.8 7.4 56 4-68 1-56 (274)
69 PRK09700 D-allose transporter 99.7 2.1E-17 4.5E-22 120.0 8.0 58 1-68 2-59 (510)
70 PRK13650 cbiO cobalt transport 99.7 2.6E-17 5.6E-22 112.4 8.0 59 1-68 1-61 (279)
71 COG1124 DppF ABC-type dipeptid 99.7 1.4E-17 3E-22 114.4 6.7 57 3-68 2-61 (252)
72 TIGR03265 PhnT2 putative 2-ami 99.7 2.7E-17 5.8E-22 116.4 8.3 56 3-68 3-58 (353)
73 cd03301 ABC_MalK_N The N-termi 99.7 2.1E-17 4.6E-22 107.8 7.2 54 5-68 1-54 (213)
74 TIGR03522 GldA_ABC_ATP gliding 99.7 2.8E-17 6E-22 113.4 8.1 55 4-68 2-56 (301)
75 PRK09493 glnQ glutamine ABC tr 99.7 2.8E-17 6E-22 109.2 7.7 55 4-68 1-55 (240)
76 PRK13548 hmuV hemin importer A 99.7 3E-17 6.6E-22 110.8 8.0 55 4-68 2-56 (258)
77 PRK11432 fbpC ferric transport 99.7 2.9E-17 6.3E-22 116.2 8.2 56 3-68 5-60 (351)
78 cd03256 ABC_PhnC_transporter A 99.7 2.2E-17 4.9E-22 109.2 7.2 55 5-68 1-55 (241)
79 COG1127 Ttg2A ABC-type transpo 99.7 2.2E-17 4.8E-22 113.7 7.3 57 2-68 6-62 (263)
80 cd03219 ABC_Mj1267_LivG_branch 99.7 2.1E-17 4.5E-22 109.3 6.9 54 5-68 1-54 (236)
81 cd03268 ABC_BcrA_bacitracin_re 99.7 2.7E-17 5.9E-22 107.2 7.4 54 5-68 1-54 (208)
82 TIGR02314 ABC_MetN D-methionin 99.7 2.7E-17 5.9E-22 116.2 7.9 56 4-68 1-59 (343)
83 PRK14251 phosphate ABC transpo 99.7 3.4E-17 7.4E-22 109.4 8.0 55 1-65 1-55 (251)
84 PRK11650 ugpC glycerol-3-phosp 99.7 2.9E-17 6.3E-22 116.3 8.0 56 3-68 2-58 (356)
85 PRK11247 ssuB aliphatic sulfon 99.7 2.8E-17 6.1E-22 111.6 7.6 56 3-68 11-66 (257)
86 PRK13543 cytochrome c biogenes 99.7 3.2E-17 7E-22 107.8 7.7 56 3-68 10-65 (214)
87 PRK15112 antimicrobial peptide 99.7 2.7E-17 5.8E-22 111.5 7.5 58 2-68 2-67 (267)
88 cd03293 ABC_NrtD_SsuB_transpor 99.7 3E-17 6.4E-22 107.9 7.5 55 5-68 1-58 (220)
89 cd03226 ABC_cobalt_CbiO_domain 99.7 1.8E-17 3.8E-22 108.0 6.3 54 6-68 1-54 (205)
90 PRK14270 phosphate ABC transpo 99.7 3.2E-17 7E-22 109.7 7.7 56 1-66 1-56 (251)
91 PRK10938 putative molybdenum t 99.7 2.3E-17 5.1E-22 119.1 7.5 55 4-68 3-57 (490)
92 TIGR00972 3a0107s01c2 phosphat 99.7 3.1E-17 6.7E-22 109.6 7.6 54 4-67 1-54 (247)
93 PRK11819 putative ABC transpor 99.7 2.6E-17 5.7E-22 121.0 7.8 57 3-68 5-61 (556)
94 PRK10418 nikD nickel transport 99.7 3.4E-17 7.4E-22 110.0 7.6 55 1-66 1-55 (254)
95 TIGR02324 CP_lyasePhnL phospho 99.7 3.7E-17 7.9E-22 107.6 7.5 56 4-68 1-62 (224)
96 PRK15439 autoinducer 2 ABC tra 99.7 3.6E-17 7.7E-22 119.2 8.2 58 1-68 8-65 (510)
97 cd03235 ABC_Metallic_Cations A 99.7 2.1E-17 4.6E-22 108.0 6.3 53 6-68 1-53 (213)
98 TIGR01189 ccmA heme ABC export 99.7 4.1E-17 8.8E-22 106.0 7.4 54 5-68 1-54 (198)
99 PRK11000 maltose/maltodextrin 99.7 4.5E-17 9.8E-22 115.6 8.3 56 3-68 2-57 (369)
100 PRK13642 cbiO cobalt transport 99.7 4.5E-17 9.8E-22 111.0 7.9 59 1-68 1-61 (277)
101 cd03223 ABCD_peroxisomal_ALDP 99.7 3.9E-17 8.4E-22 104.4 7.1 55 5-68 1-55 (166)
102 PRK13641 cbiO cobalt transport 99.7 4.1E-17 9E-22 111.8 7.7 56 4-68 2-61 (287)
103 TIGR02769 nickel_nikE nickel i 99.7 4.5E-17 9.8E-22 110.1 7.8 56 4-68 2-65 (265)
104 PRK14261 phosphate ABC transpo 99.7 4.6E-17 1E-21 109.0 7.7 55 1-65 3-57 (253)
105 cd03254 ABCC_Glucan_exporter_l 99.7 3.6E-17 7.9E-22 107.7 7.1 56 4-68 2-57 (229)
106 PRK13639 cbiO cobalt transport 99.7 4.1E-17 8.9E-22 111.1 7.6 56 4-68 1-56 (275)
107 PRK11153 metN DL-methionine tr 99.7 4.2E-17 9.1E-22 114.6 7.9 56 4-68 1-59 (343)
108 PRK13635 cbiO cobalt transport 99.7 4.5E-17 9.8E-22 111.3 7.8 57 3-68 4-61 (279)
109 PRK10575 iron-hydroxamate tran 99.7 5.2E-17 1.1E-21 109.8 8.0 56 3-68 10-65 (265)
110 PRK14256 phosphate ABC transpo 99.7 5E-17 1.1E-21 108.8 7.8 55 1-65 1-55 (252)
111 PRK09536 btuD corrinoid ABC tr 99.7 4.6E-17 9.9E-22 117.3 8.1 56 3-68 2-57 (402)
112 PRK10851 sulfate/thiosulfate t 99.7 5.4E-17 1.2E-21 114.8 8.3 55 4-68 2-56 (353)
113 PRK11607 potG putrescine trans 99.7 5.4E-17 1.2E-21 115.8 8.4 57 2-68 17-73 (377)
114 cd03229 ABC_Class3 This class 99.7 5.2E-17 1.1E-21 104.3 7.5 54 5-68 1-54 (178)
115 cd03260 ABC_PstB_phosphate_tra 99.7 3.6E-17 7.8E-22 107.8 6.8 53 5-67 1-58 (227)
116 cd03250 ABCC_MRP_domain1 Domai 99.7 4.2E-17 9.2E-22 106.2 7.0 55 5-68 1-59 (204)
117 PRK10619 histidine/lysine/argi 99.7 6.4E-17 1.4E-21 108.7 8.0 56 3-68 4-59 (257)
118 PRK10253 iron-enterobactin tra 99.7 5.8E-17 1.2E-21 109.6 7.8 56 3-68 6-61 (265)
119 TIGR03005 ectoine_ehuA ectoine 99.7 4.9E-17 1.1E-21 108.9 7.4 54 5-68 1-54 (252)
120 PRK13549 xylose transporter AT 99.7 4.7E-17 1E-21 118.2 7.8 55 2-66 3-57 (506)
121 cd03225 ABC_cobalt_CbiO_domain 99.7 3.9E-17 8.5E-22 106.5 6.6 54 6-68 1-55 (211)
122 PRK10419 nikE nickel transport 99.7 6.7E-17 1.5E-21 109.7 8.0 57 3-68 2-66 (268)
123 PRK13547 hmuV hemin importer A 99.7 5E-17 1.1E-21 111.2 7.4 54 4-67 1-54 (272)
124 PRK13649 cbiO cobalt transport 99.7 5.6E-17 1.2E-21 110.2 7.6 56 4-68 2-61 (280)
125 PRK14273 phosphate ABC transpo 99.7 5.3E-17 1.1E-21 108.8 7.3 55 3-67 6-60 (254)
126 COG0411 LivG ABC-type branched 99.7 9.9E-18 2.2E-22 115.0 3.8 56 3-68 3-58 (250)
127 PRK13637 cbiO cobalt transport 99.7 6.5E-17 1.4E-21 110.9 7.9 56 4-68 2-61 (287)
128 cd03295 ABC_OpuCA_Osmoprotecti 99.7 5.7E-17 1.2E-21 108.0 7.4 55 5-68 1-55 (242)
129 cd03230 ABC_DR_subfamily_A Thi 99.7 7.3E-17 1.6E-21 103.2 7.5 54 5-68 1-54 (173)
130 cd03231 ABC_CcmA_heme_exporter 99.7 5.5E-17 1.2E-21 105.9 7.0 54 5-68 1-54 (201)
131 PRK14253 phosphate ABC transpo 99.7 5.9E-17 1.3E-21 108.1 7.3 54 3-66 2-55 (249)
132 PRK13651 cobalt transporter AT 99.7 6E-17 1.3E-21 112.5 7.5 56 4-68 2-61 (305)
133 PRK14242 phosphate transporter 99.7 7E-17 1.5E-21 108.0 7.6 54 2-65 4-57 (253)
134 PRK13643 cbiO cobalt transport 99.7 5.4E-17 1.2E-21 111.4 7.1 56 4-68 1-60 (288)
135 PRK14262 phosphate ABC transpo 99.7 7.1E-17 1.5E-21 107.8 7.5 54 3-66 2-55 (250)
136 PRK13646 cbiO cobalt transport 99.7 6.7E-17 1.5E-21 110.7 7.5 56 4-68 2-61 (286)
137 PRK13648 cbiO cobalt transport 99.7 6.8E-17 1.5E-21 109.5 7.5 57 3-68 6-63 (269)
138 PRK14247 phosphate ABC transpo 99.7 7.2E-17 1.6E-21 107.8 7.5 54 3-66 2-55 (250)
139 PRK13632 cbiO cobalt transport 99.7 7.1E-17 1.5E-21 109.6 7.6 57 3-68 6-63 (271)
140 TIGR03608 L_ocin_972_ABC putat 99.7 5.4E-17 1.2E-21 105.3 6.7 52 7-68 1-52 (206)
141 TIGR01978 sufC FeS assembly AT 99.7 6.2E-17 1.3E-21 107.2 7.1 53 5-67 1-55 (243)
142 cd03247 ABCC_cytochrome_bd The 99.7 7.5E-17 1.6E-21 103.5 7.0 55 5-68 1-56 (178)
143 PRK14274 phosphate ABC transpo 99.7 7.8E-17 1.7E-21 108.4 7.4 53 3-65 11-63 (259)
144 PRK14246 phosphate ABC transpo 99.7 6.6E-17 1.4E-21 109.3 7.1 55 3-67 9-63 (257)
145 PRK10636 putative ABC transpor 99.7 5.7E-17 1.2E-21 121.3 7.3 55 4-68 1-55 (638)
146 PRK13645 cbiO cobalt transport 99.7 8.6E-17 1.9E-21 110.0 7.6 57 3-68 5-65 (289)
147 cd03264 ABC_drug_resistance_li 99.7 7.8E-17 1.7E-21 105.2 7.0 53 5-68 1-53 (211)
148 PRK14237 phosphate transporter 99.7 1E-16 2.2E-21 108.6 7.7 54 3-66 19-72 (267)
149 PRK14235 phosphate transporter 99.7 1.1E-16 2.4E-21 108.5 7.9 54 3-66 18-71 (267)
150 cd03248 ABCC_TAP TAP, the Tran 99.7 9.1E-17 2E-21 105.8 7.3 57 3-68 10-68 (226)
151 cd03253 ABCC_ATM1_transporter 99.7 7.8E-17 1.7E-21 106.5 6.9 55 5-68 1-55 (236)
152 PRK14259 phosphate ABC transpo 99.7 1.2E-16 2.7E-21 108.5 7.9 53 3-65 12-64 (269)
153 TIGR03740 galliderm_ABC gallid 99.7 1.1E-16 2.4E-21 105.4 7.5 54 5-68 1-54 (223)
154 cd03228 ABCC_MRP_Like The MRP 99.7 9.2E-17 2E-21 102.6 6.8 55 5-68 1-56 (171)
155 cd03245 ABCC_bacteriocin_expor 99.7 9.9E-17 2.1E-21 105.1 7.1 55 5-68 3-58 (220)
156 PRK11147 ABC transporter ATPas 99.7 9.6E-17 2.1E-21 119.8 7.8 56 3-68 2-57 (635)
157 TIGR03873 F420-0_ABC_ATP propo 99.7 1.3E-16 2.8E-21 107.2 7.7 54 5-68 2-55 (256)
158 TIGR03258 PhnT 2-aminoethylpho 99.7 1.2E-16 2.7E-21 113.5 7.9 55 4-68 5-59 (362)
159 cd03215 ABC_Carb_Monos_II This 99.7 1.2E-16 2.7E-21 102.9 7.3 52 3-68 3-54 (182)
160 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 1.5E-16 3.3E-21 99.9 7.4 54 5-68 1-54 (144)
161 PRK13634 cbiO cobalt transport 99.7 1.3E-16 2.8E-21 109.6 7.6 56 4-68 2-61 (290)
162 PRK15064 ABC transporter ATP-b 99.7 9.7E-17 2.1E-21 117.1 7.4 55 4-68 1-55 (530)
163 cd03214 ABC_Iron-Siderophores_ 99.7 1.3E-16 2.8E-21 102.7 7.1 53 6-68 1-53 (180)
164 PRK14268 phosphate ABC transpo 99.7 1.5E-16 3.2E-21 107.1 7.7 54 3-66 11-64 (258)
165 cd03251 ABCC_MsbA MsbA is an e 99.7 1.1E-16 2.3E-21 105.8 6.8 55 5-68 1-56 (234)
166 PRK14248 phosphate ABC transpo 99.7 1.4E-16 3E-21 107.8 7.5 53 3-65 20-72 (268)
167 cd03233 ABC_PDR_domain1 The pl 99.7 1.5E-16 3.3E-21 104.1 7.4 54 3-65 2-58 (202)
168 PRK14239 phosphate transporter 99.7 1.8E-16 4E-21 105.8 7.9 53 3-65 4-56 (252)
169 cd03244 ABCC_MRP_domain2 Domai 99.7 1.3E-16 2.9E-21 104.6 7.0 55 5-68 3-58 (221)
170 COG2884 FtsE Predicted ATPase 99.7 2.7E-17 5.8E-22 110.7 3.7 56 4-68 1-56 (223)
171 cd03252 ABCC_Hemolysin The ABC 99.7 1.2E-16 2.6E-21 105.8 6.8 55 5-68 1-56 (237)
172 PRK09580 sufC cysteine desulfu 99.7 1.5E-16 3.2E-21 105.9 7.3 54 4-67 1-56 (248)
173 CHL00131 ycf16 sulfate ABC tra 99.7 2E-16 4.4E-21 105.6 7.9 55 3-67 6-62 (252)
174 PRK10744 pstB phosphate transp 99.7 1.9E-16 4E-21 106.7 7.7 53 3-65 12-64 (260)
175 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 1.2E-16 2.7E-21 105.8 6.8 55 5-68 1-57 (238)
176 PRK14271 phosphate ABC transpo 99.7 1.9E-16 4.2E-21 108.1 7.9 54 3-66 20-73 (276)
177 PRK13640 cbiO cobalt transport 99.7 1.6E-16 3.5E-21 108.6 7.4 56 3-67 4-60 (282)
178 PRK13541 cytochrome c biogenes 99.7 2E-16 4.3E-21 102.7 7.4 54 4-68 1-54 (195)
179 cd03246 ABCC_Protease_Secretio 99.7 1.5E-16 3.3E-21 101.8 6.8 55 5-68 1-56 (173)
180 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.4E-16 3.1E-21 117.0 7.5 58 2-68 2-59 (552)
181 TIGR02982 heterocyst_DevA ABC 99.7 2.6E-16 5.7E-21 103.6 7.9 56 4-68 1-59 (220)
182 PRK14240 phosphate transporter 99.7 2E-16 4.3E-21 105.7 7.3 52 4-65 3-54 (250)
183 PRK10070 glycine betaine trans 99.7 1.5E-16 3.4E-21 114.5 7.2 59 1-68 1-82 (400)
184 PRK14269 phosphate ABC transpo 99.7 2.1E-16 4.5E-21 105.6 7.4 52 4-65 2-53 (246)
185 COG1135 AbcC ABC-type metal io 99.7 1.6E-16 3.4E-21 112.5 7.0 56 4-68 1-60 (339)
186 PRK11288 araG L-arabinose tran 99.7 2.5E-16 5.4E-21 114.3 8.1 56 3-68 3-58 (501)
187 PRK14258 phosphate ABC transpo 99.7 2.9E-16 6.2E-21 106.0 7.7 55 3-67 6-60 (261)
188 PRK14243 phosphate transporter 99.7 2.3E-16 5E-21 106.8 7.2 53 3-65 9-61 (264)
189 PRK13631 cbiO cobalt transport 99.7 2.9E-16 6.2E-21 109.8 7.8 57 3-68 20-80 (320)
190 PRK14252 phosphate ABC transpo 99.7 3.3E-16 7.2E-21 105.8 7.9 54 3-66 15-68 (265)
191 cd03213 ABCG_EPDR ABCG transpo 99.7 2.6E-16 5.6E-21 102.5 7.0 55 4-67 3-64 (194)
192 PRK14265 phosphate ABC transpo 99.7 3.4E-16 7.4E-21 106.7 7.8 54 3-66 19-72 (274)
193 PRK14255 phosphate ABC transpo 99.7 3.6E-16 7.7E-21 104.5 7.7 53 3-65 4-56 (252)
194 PRK10771 thiQ thiamine transpo 99.7 2.7E-16 5.8E-21 104.2 7.0 53 4-68 1-53 (232)
195 PRK15079 oligopeptide ABC tran 99.7 4E-16 8.7E-21 109.5 8.2 57 3-68 7-75 (331)
196 cd03369 ABCC_NFT1 Domain 2 of 99.7 3.1E-16 6.8E-21 102.3 7.1 56 4-68 6-62 (207)
197 PRK14260 phosphate ABC transpo 99.7 3.5E-16 7.5E-21 105.4 7.5 54 3-66 6-59 (259)
198 PRK14254 phosphate ABC transpo 99.7 4.5E-16 9.8E-21 106.8 8.1 53 3-65 38-90 (285)
199 PRK14245 phosphate ABC transpo 99.7 4.6E-16 9.9E-21 104.1 7.8 51 3-63 2-52 (250)
200 PRK14238 phosphate transporter 99.7 3.8E-16 8.2E-21 106.2 7.3 53 3-65 23-75 (271)
201 PRK11308 dppF dipeptide transp 99.7 5E-16 1.1E-20 108.8 8.1 58 2-68 3-69 (327)
202 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 1.3E-16 2.8E-21 105.9 4.9 54 5-68 23-76 (224)
203 cd03298 ABC_ThiQ_thiamine_tran 99.7 3.4E-16 7.3E-21 102.2 6.7 52 5-68 1-52 (211)
204 TIGR00968 3a0106s01 sulfate AB 99.7 4.4E-16 9.6E-21 103.7 7.4 53 5-67 1-53 (237)
205 cd03300 ABC_PotA_N PotA is an 99.7 3.9E-16 8.4E-21 103.6 7.1 54 5-68 1-54 (232)
206 COG4152 ABC-type uncharacteriz 99.7 1.4E-16 3.1E-21 110.6 5.2 55 4-68 2-56 (300)
207 TIGR02868 CydC thiol reductant 99.7 3.2E-16 6.9E-21 113.8 7.2 56 4-68 334-389 (529)
208 COG1122 CbiO ABC-type cobalt t 99.7 5.6E-16 1.2E-20 105.3 7.9 57 3-68 2-58 (235)
209 PRK14236 phosphate transporter 99.7 5.3E-16 1.2E-20 105.4 7.8 54 3-66 24-77 (272)
210 cd03290 ABCC_SUR1_N The SUR do 99.7 3.5E-16 7.7E-21 102.7 6.6 54 6-68 2-55 (218)
211 cd03232 ABC_PDR_domain2 The pl 99.7 6.5E-16 1.4E-20 100.3 7.8 54 3-65 2-58 (192)
212 PRK11022 dppD dipeptide transp 99.6 5.6E-16 1.2E-20 108.4 7.9 54 4-66 3-59 (326)
213 PRK15064 ABC transporter ATP-b 99.6 4.1E-16 8.9E-21 113.8 7.5 56 3-68 318-373 (530)
214 PRK10261 glutathione transport 99.6 5E-16 1.1E-20 115.8 8.1 57 3-68 11-70 (623)
215 PRK15093 antimicrobial peptide 99.6 5.7E-16 1.2E-20 108.3 7.9 55 3-66 2-59 (330)
216 COG0410 LivF ABC-type branched 99.6 5.3E-16 1.2E-20 105.9 7.3 55 3-67 2-56 (237)
217 COG4555 NatA ABC-type Na+ tran 99.6 6.5E-17 1.4E-21 109.8 2.7 56 4-68 1-56 (245)
218 cd03217 ABC_FeS_Assembly ABC-t 99.6 5.3E-16 1.1E-20 101.3 7.0 53 5-67 1-55 (200)
219 TIGR02633 xylG D-xylose ABC tr 99.6 5.4E-16 1.2E-20 112.3 7.6 53 4-66 1-53 (500)
220 COG1118 CysA ABC-type sulfate/ 99.6 2E-16 4.3E-21 112.1 5.1 56 3-68 1-56 (345)
221 COG3845 ABC-type uncharacteriz 99.6 4.9E-16 1.1E-20 114.5 7.4 58 1-68 1-58 (501)
222 PRK15134 microcin C ABC transp 99.6 5.8E-16 1.3E-20 113.0 7.7 55 3-66 4-61 (529)
223 PRK14275 phosphate ABC transpo 99.6 8.1E-16 1.8E-20 105.5 7.9 53 3-65 38-90 (286)
224 cd03288 ABCC_SUR2 The SUR doma 99.6 7E-16 1.5E-20 104.0 7.4 56 4-68 19-75 (257)
225 PRK09473 oppD oligopeptide tra 99.6 8E-16 1.7E-20 107.9 7.9 57 2-67 10-69 (330)
226 PRK11819 putative ABC transpor 99.6 7.3E-16 1.6E-20 113.4 8.1 56 3-68 323-378 (556)
227 TIGR03269 met_CoM_red_A2 methy 99.6 7.4E-16 1.6E-20 112.1 8.0 57 3-68 278-338 (520)
228 cd03294 ABC_Pro_Gly_Bertaine T 99.6 2.5E-16 5.5E-21 106.9 5.2 52 7-68 27-78 (269)
229 PRK10636 putative ABC transpor 99.6 6.8E-16 1.5E-20 115.5 7.8 55 4-68 312-366 (638)
230 PRK14264 phosphate ABC transpo 99.6 1E-15 2.3E-20 105.8 8.1 54 2-65 43-96 (305)
231 PRK11147 ABC transporter ATPas 99.6 7.2E-16 1.6E-20 115.1 7.8 55 4-68 319-373 (635)
232 COG1119 ModF ABC-type molybden 99.6 5.9E-16 1.3E-20 106.6 6.8 56 2-67 29-84 (257)
233 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 8.3E-16 1.8E-20 112.9 7.8 56 3-68 321-376 (552)
234 COG1129 MglA ABC-type sugar tr 99.6 5.9E-16 1.3E-20 114.4 6.8 56 3-68 7-62 (500)
235 TIGR03269 met_CoM_red_A2 methy 99.6 7.5E-16 1.6E-20 112.1 7.1 53 5-67 1-55 (520)
236 cd03234 ABCG_White The White s 99.6 6.4E-16 1.4E-20 102.1 6.1 54 3-65 2-58 (226)
237 PRK14266 phosphate ABC transpo 99.6 1.5E-15 3.3E-20 101.4 7.8 53 3-65 2-54 (250)
238 cd03267 ABC_NatA_like Similar 99.6 7.2E-16 1.6E-20 102.8 6.0 41 19-68 35-75 (236)
239 PRK10938 putative molybdenum t 99.6 1.2E-15 2.6E-20 110.3 7.5 54 3-66 259-312 (490)
240 cd03299 ABC_ModC_like Archeal 99.6 1.2E-15 2.6E-20 101.6 7.0 53 5-68 1-53 (235)
241 TIGR01277 thiQ thiamine ABC tr 99.6 1.1E-15 2.3E-20 100.3 6.5 52 5-68 1-52 (213)
242 PRK11144 modC molybdate transp 99.6 1.4E-15 3.1E-20 107.2 7.5 52 4-68 1-52 (352)
243 COG4559 ABC-type hemin transpo 99.6 8.2E-16 1.8E-20 105.2 5.9 55 4-68 1-55 (259)
244 PLN03073 ABC transporter F fam 99.6 1.7E-15 3.6E-20 115.3 7.8 57 3-68 507-563 (718)
245 PRK14244 phosphate ABC transpo 99.6 2E-15 4.3E-20 101.0 7.2 51 5-65 6-56 (251)
246 PRK10522 multidrug transporter 99.6 2.2E-15 4.8E-20 110.4 7.6 56 4-68 322-377 (547)
247 COG0488 Uup ATPase components 99.6 1.6E-15 3.4E-20 112.6 6.9 56 3-68 2-57 (530)
248 COG4608 AppF ABC-type oligopep 99.6 2.4E-15 5.2E-20 104.3 7.3 61 1-68 1-67 (268)
249 PRK10261 glutathione transport 99.6 2.8E-15 6.1E-20 111.8 8.2 57 3-68 312-378 (623)
250 PRK10982 galactose/methyl gala 99.6 1.6E-15 3.4E-20 109.8 6.6 52 7-68 1-52 (491)
251 TIGR01193 bacteriocin_ABC ABC- 99.6 1.9E-15 4.1E-20 113.3 7.1 56 4-68 473-528 (708)
252 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 2.5E-15 5.4E-20 112.3 7.4 56 4-68 451-507 (686)
253 cd03222 ABC_RNaseL_inhibitor T 99.6 2.1E-15 4.5E-20 98.5 6.1 50 8-68 4-53 (177)
254 PRK13546 teichoic acids export 99.6 4.5E-15 9.8E-20 101.3 8.0 59 1-68 1-78 (264)
255 TIGR01188 drrA daunorubicin re 99.6 1.9E-15 4.1E-20 104.2 6.1 47 12-68 1-47 (302)
256 COG4604 CeuD ABC-type enteroch 99.6 9.5E-16 2.1E-20 104.2 4.5 55 4-68 1-55 (252)
257 PRK14263 phosphate ABC transpo 99.6 4.6E-15 9.9E-20 100.5 7.8 54 3-66 7-60 (261)
258 PRK10790 putative multidrug tr 99.6 3.1E-15 6.8E-20 110.0 7.3 56 4-68 340-395 (592)
259 TIGR01166 cbiO cobalt transpor 99.6 2.2E-15 4.7E-20 97.2 5.7 42 18-68 5-46 (190)
260 COG2274 SunT ABC-type bacterio 99.6 2.3E-15 4.9E-20 114.7 6.6 56 4-68 471-527 (709)
261 PRK09700 D-allose transporter 99.6 2E-15 4.4E-20 109.7 6.1 53 4-68 265-317 (510)
262 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 2.9E-15 6.2E-20 112.2 7.0 56 4-68 477-533 (710)
263 TIGR02857 CydD thiol reductant 99.6 3.3E-15 7E-20 108.6 7.1 56 4-68 320-376 (529)
264 PRK13549 xylose transporter AT 99.6 2E-15 4.2E-20 109.8 5.9 54 4-66 259-314 (506)
265 PRK11176 lipid transporter ATP 99.6 3.1E-15 6.7E-20 109.6 6.6 56 4-68 341-397 (582)
266 TIGR02633 xylG D-xylose ABC tr 99.6 2.2E-15 4.8E-20 109.1 5.8 54 4-66 257-312 (500)
267 cd03297 ABC_ModC_molybdenum_tr 99.6 3.9E-15 8.5E-20 97.5 6.5 47 9-68 5-51 (214)
268 PRK10535 macrolide transporter 99.6 6.2E-15 1.3E-19 110.5 8.3 59 1-68 1-62 (648)
269 cd00267 ABC_ATPase ABC (ATP-bi 99.6 6.7E-15 1.5E-19 92.5 7.1 51 7-67 2-52 (157)
270 PRK13657 cyclic beta-1,2-gluca 99.6 4.6E-15 1E-19 109.2 7.3 56 4-68 334-389 (588)
271 TIGR02142 modC_ABC molybdenum 99.6 6.3E-15 1.4E-19 103.9 7.2 48 9-68 4-51 (354)
272 COG1117 PstB ABC-type phosphat 99.6 2.7E-15 5.9E-20 102.5 5.1 55 3-67 6-60 (253)
273 PRK11160 cysteine/glutathione 99.6 6.3E-15 1.4E-19 108.7 7.1 56 4-68 338-394 (574)
274 PRK15134 microcin C ABC transp 99.6 4.8E-15 1E-19 108.2 6.4 54 3-65 274-337 (529)
275 PLN03073 ABC transporter F fam 99.6 7.6E-15 1.6E-19 111.7 7.7 52 3-64 176-227 (718)
276 COG4133 CcmA ABC-type transpor 99.6 3.2E-15 6.9E-20 100.2 4.8 55 4-68 2-56 (209)
277 TIGR03375 type_I_sec_LssB type 99.6 7.3E-15 1.6E-19 110.0 7.3 56 4-68 463-519 (694)
278 TIGR01192 chvA glucan exporter 99.6 7.6E-15 1.6E-19 108.6 6.9 56 4-68 334-389 (585)
279 COG1123 ATPase components of v 99.6 8.8E-15 1.9E-19 109.0 7.1 59 3-68 279-345 (539)
280 cd03291 ABCC_CFTR1 The CFTR su 99.6 1.2E-14 2.6E-19 100.3 7.3 53 4-68 39-91 (282)
281 TIGR00954 3a01203 Peroxysomal 99.6 1.1E-14 2.4E-19 109.4 7.7 55 4-67 451-505 (659)
282 COG4167 SapF ABC-type antimicr 99.6 1.5E-15 3.3E-20 102.9 2.7 65 1-68 1-67 (267)
283 PRK13545 tagH teichoic acids e 99.6 1.3E-14 2.8E-19 108.2 7.9 56 4-68 21-78 (549)
284 COG4525 TauB ABC-type taurine 99.6 4.8E-15 1E-19 100.9 5.0 57 3-68 2-59 (259)
285 TIGR00958 3a01208 Conjugate Tr 99.6 8.5E-15 1.8E-19 110.4 6.8 56 4-68 478-535 (711)
286 PRK11174 cysteine/glutathione 99.6 1.3E-14 2.7E-19 106.6 7.4 55 4-68 349-403 (588)
287 TIGR01842 type_I_sec_PrtD type 99.6 1E-14 2.2E-19 106.7 6.9 56 4-68 316-372 (544)
288 cd03289 ABCC_CFTR2 The CFTR su 99.6 1.3E-14 2.8E-19 99.8 6.9 53 4-65 2-55 (275)
289 TIGR01194 cyc_pep_trnsptr cycl 99.5 1.4E-14 3E-19 106.5 7.3 56 4-68 337-396 (555)
290 COG1137 YhbG ABC-type (unclass 99.5 8.7E-16 1.9E-20 104.3 0.6 56 3-68 3-58 (243)
291 PRK14257 phosphate ABC transpo 99.5 2.3E-14 5.1E-19 100.5 7.5 54 4-66 80-134 (329)
292 cd03236 ABC_RNaseL_inhibitor_d 99.5 5.8E-15 1.3E-19 100.4 4.3 51 8-68 4-54 (255)
293 TIGR02204 MsbA_rel ABC transpo 99.5 1.7E-14 3.7E-19 105.4 6.9 56 4-68 337-394 (576)
294 TIGR02203 MsbA_lipidA lipid A 99.5 1.7E-14 3.6E-19 105.3 6.8 56 4-68 330-386 (571)
295 COG1132 MdlB ABC-type multidru 99.5 1.8E-14 3.9E-19 105.7 6.8 56 4-68 328-383 (567)
296 PRK10982 galactose/methyl gala 99.5 1.3E-14 2.9E-19 105.0 6.0 54 3-68 249-302 (491)
297 PRK10789 putative multidrug tr 99.5 2E-14 4.3E-19 105.9 6.9 56 4-68 313-369 (569)
298 PRK13409 putative ATPase RIL; 99.5 2.3E-14 5E-19 107.0 7.2 55 3-68 339-393 (590)
299 TIGR01846 type_I_sec_HlyB type 99.5 2.5E-14 5.4E-19 107.2 7.0 56 4-68 455-511 (694)
300 COG3840 ThiQ ABC-type thiamine 99.5 2.2E-14 4.7E-19 96.7 5.9 53 4-68 1-53 (231)
301 PRK15177 Vi polysaccharide exp 99.5 1.8E-14 3.9E-19 95.2 5.5 36 30-68 6-41 (213)
302 COG4181 Predicted ABC-type tra 99.5 1.9E-14 4.1E-19 96.4 5.4 57 3-68 5-64 (228)
303 COG1134 TagH ABC-type polysacc 99.5 2.1E-14 4.6E-19 98.7 5.7 36 30-68 46-81 (249)
304 TIGR01186 proV glycine betaine 99.5 2E-14 4.3E-19 102.5 5.7 47 12-68 1-47 (363)
305 TIGR01257 rim_protein retinal- 99.5 4.7E-14 1E-18 116.6 8.1 57 3-68 1936-1993(2272)
306 COG0488 Uup ATPase components 99.5 3.6E-14 7.8E-19 105.4 6.5 56 3-67 320-375 (530)
307 COG4107 PhnK ABC-type phosphon 99.5 1.5E-14 3.3E-19 97.5 4.0 56 3-68 5-60 (258)
308 PF00005 ABC_tran: ABC transpo 99.5 2.4E-14 5.3E-19 87.3 4.3 35 30-67 4-38 (137)
309 TIGR03415 ABC_choXWV_ATP choli 99.5 2.7E-14 5.7E-19 102.5 5.0 36 30-68 43-78 (382)
310 COG0396 sufC Cysteine desulfur 99.5 6.4E-14 1.4E-18 96.1 6.1 53 3-64 2-54 (251)
311 PTZ00265 multidrug resistance 99.5 5.7E-14 1.2E-18 112.9 6.6 56 4-68 382-439 (1466)
312 COG4987 CydC ABC-type transpor 99.5 6.2E-14 1.3E-18 104.6 5.5 56 4-68 336-392 (573)
313 PRK10762 D-ribose transporter 99.5 6.9E-14 1.5E-18 101.6 5.6 50 4-68 257-306 (501)
314 TIGR01257 rim_protein retinal- 99.5 1.4E-13 3.1E-18 113.8 7.9 56 4-68 928-984 (2272)
315 TIGR01184 ntrCD nitrate transp 99.5 7.2E-14 1.6E-18 92.9 5.1 36 30-68 4-39 (230)
316 KOG0058 Peptide exporter, ABC 99.5 8.9E-14 1.9E-18 105.9 6.1 56 4-68 465-522 (716)
317 COG4619 ABC-type uncharacteriz 99.5 3.6E-14 7.9E-19 94.8 3.3 55 4-68 3-57 (223)
318 PRK15439 autoinducer 2 ABC tra 99.5 8.7E-14 1.9E-18 101.5 5.6 50 4-68 268-317 (510)
319 TIGR02770 nickel_nikD nickel i 99.5 8.3E-14 1.8E-18 92.3 4.8 34 30-66 5-38 (230)
320 PRK03695 vitamin B12-transport 99.5 8.1E-14 1.8E-18 93.6 4.7 46 6-65 2-47 (248)
321 COG4778 PhnL ABC-type phosphon 99.5 1.5E-13 3.4E-18 92.1 5.9 59 1-68 1-65 (235)
322 COG4988 CydD ABC-type transpor 99.5 1.4E-13 2.9E-18 102.9 6.2 55 5-68 321-375 (559)
323 PRK11288 araG L-arabinose tran 99.5 1.1E-13 2.3E-18 100.6 5.5 51 4-68 257-307 (501)
324 PRK13409 putative ATPase RIL; 99.4 1E-13 2.3E-18 103.5 5.4 50 9-68 78-127 (590)
325 PLN03232 ABC transporter C fam 99.4 2E-13 4.4E-18 109.7 7.0 56 4-68 1234-1290(1495)
326 COG4674 Uncharacterized ABC-ty 99.4 1.3E-13 2.8E-18 93.8 4.4 56 3-68 4-59 (249)
327 PTZ00265 multidrug resistance 99.4 2.4E-13 5.1E-18 109.4 6.4 54 4-66 1165-1220(1466)
328 PTZ00243 ABC transporter; Prov 99.4 3.7E-13 8.1E-18 108.7 7.2 56 4-68 1308-1364(1560)
329 PLN03130 ABC transporter C fam 99.4 3.8E-13 8.2E-18 109.0 7.2 56 4-68 1237-1293(1622)
330 PLN03211 ABC transporter G-25; 99.4 1.9E-13 4E-18 103.2 5.1 51 7-67 71-121 (659)
331 cd03237 ABC_RNaseL_inhibitor_d 99.4 3.2E-13 7E-18 91.3 5.0 34 32-68 20-53 (246)
332 COG4586 ABC-type uncharacteriz 99.4 2E-13 4.4E-18 96.0 4.0 36 30-68 43-78 (325)
333 KOG0055 Multidrug/pheromone ex 99.4 3.5E-13 7.7E-18 107.0 5.8 56 4-68 350-407 (1228)
334 KOG0057 Mitochondrial Fe/S clu 99.4 4.4E-13 9.5E-18 100.3 5.9 53 4-65 351-403 (591)
335 COG4598 HisP ABC-type histidin 99.4 1.9E-13 4E-18 92.5 3.4 56 3-68 5-60 (256)
336 TIGR00957 MRP_assoc_pro multi 99.4 6.5E-13 1.4E-17 107.0 7.0 56 4-68 1284-1340(1522)
337 COG1123 ATPase components of v 99.4 1E-12 2.2E-17 98.1 7.3 57 2-67 3-62 (539)
338 COG4136 ABC-type uncharacteriz 99.4 8.7E-13 1.9E-17 87.3 6.2 54 4-67 2-55 (213)
339 COG0444 DppD ABC-type dipeptid 99.4 9.3E-13 2E-17 93.1 6.6 53 4-65 1-56 (316)
340 TIGR00957 MRP_assoc_pro multi 99.4 1.5E-12 3.3E-17 104.9 7.3 56 4-68 636-692 (1522)
341 PLN03232 ABC transporter C fam 99.4 1.8E-12 3.8E-17 104.4 7.2 56 4-68 614-671 (1495)
342 cd03238 ABC_UvrA The excision 99.4 1.3E-12 2.8E-17 85.2 5.1 35 18-61 8-42 (176)
343 TIGR00956 3a01205 Pleiotropic 99.4 2.1E-12 4.5E-17 103.6 7.2 53 4-65 759-814 (1394)
344 KOG0056 Heavy metal exporter H 99.3 1.7E-12 3.7E-17 97.5 5.6 55 4-67 537-591 (790)
345 COG4615 PvdE ABC-type sideroph 99.3 3E-12 6.5E-17 94.0 6.3 56 4-68 322-377 (546)
346 PLN03130 ABC transporter C fam 99.3 3.4E-12 7.4E-17 103.5 6.6 56 4-68 614-671 (1622)
347 TIGR01271 CFTR_protein cystic 99.3 4.9E-12 1.1E-16 101.9 7.0 53 4-65 1217-1270(1490)
348 TIGR03771 anch_rpt_ABC anchore 99.3 2E-12 4.4E-17 85.6 4.0 34 32-68 1-34 (223)
349 COG4161 ArtP ABC-type arginine 99.3 3.9E-12 8.5E-17 85.2 4.6 55 4-68 2-56 (242)
350 COG1101 PhnK ABC-type uncharac 99.3 2.1E-12 4.6E-17 88.7 3.4 56 4-68 1-60 (263)
351 COG4175 ProV ABC-type proline/ 99.3 1.4E-11 3.1E-16 88.2 6.1 61 1-68 1-82 (386)
352 PLN03140 ABC transporter G fam 99.2 2.3E-11 4.9E-16 98.3 7.1 53 4-65 867-931 (1470)
353 TIGR01271 CFTR_protein cystic 99.2 2.2E-11 4.8E-16 98.2 7.1 36 30-68 445-480 (1490)
354 KOG0055 Multidrug/pheromone ex 99.2 1.8E-11 3.8E-16 97.6 5.4 56 4-68 987-1044(1228)
355 COG4618 ArpD ABC-type protease 99.2 3.7E-11 8.1E-16 89.7 6.0 56 4-68 334-390 (580)
356 COG4178 ABC-type uncharacteriz 99.2 4.9E-11 1.1E-15 90.0 6.6 54 3-65 391-444 (604)
357 KOG0927 Predicted transporter 99.2 2.2E-11 4.8E-16 91.3 3.5 57 3-68 388-444 (614)
358 KOG0927 Predicted transporter 99.1 9.4E-11 2E-15 88.0 6.3 54 4-67 75-128 (614)
359 TIGR00955 3a01204 The Eye Pigm 99.1 5.2E-11 1.1E-15 89.0 4.8 41 18-67 38-78 (617)
360 cd00820 PEPCK_HprK Phosphoenol 99.1 8.2E-11 1.8E-15 72.2 4.8 29 30-61 8-36 (107)
361 KOG2355 Predicted ABC-type tra 99.1 1E-10 2.2E-15 80.5 5.4 51 4-63 13-63 (291)
362 PTZ00243 ABC transporter; Prov 99.1 1.2E-10 2.6E-15 94.4 6.1 41 19-68 674-714 (1560)
363 KOG0059 Lipid exporter ABCA1 a 99.1 1.4E-10 2.9E-15 90.1 5.8 56 4-68 564-619 (885)
364 PLN03140 ABC transporter G fam 99.1 1E-10 2.2E-15 94.6 4.9 40 19-67 179-218 (1470)
365 cd03270 ABC_UvrA_I The excisio 99.1 8.4E-11 1.8E-15 78.4 3.1 25 30-57 14-38 (226)
366 cd03278 ABC_SMC_barmotin Barmo 99.1 1E-10 2.2E-15 76.9 3.1 33 30-66 16-48 (197)
367 KOG0054 Multidrug resistance-a 99.0 3.5E-10 7.6E-15 91.2 6.1 55 4-67 1138-1193(1381)
368 TIGR03238 dnd_assoc_3 dnd syst 99.0 1.4E-10 3E-15 86.1 3.6 34 30-68 25-58 (504)
369 TIGR00956 3a01205 Pleiotropic 99.0 2.6E-10 5.6E-15 91.8 5.3 37 19-64 75-111 (1394)
370 KOG0061 Transporter, ABC super 99.0 6.8E-10 1.5E-14 83.6 6.8 53 5-66 26-82 (613)
371 KOG0062 ATPase component of AB 99.0 2.2E-10 4.7E-15 85.7 3.7 48 5-62 81-128 (582)
372 KOG0060 Long-chain acyl-CoA tr 99.0 7.7E-10 1.7E-14 83.7 6.7 55 3-66 432-487 (659)
373 COG5265 ATM1 ABC-type transpor 99.0 5.8E-10 1.3E-14 82.1 4.3 55 5-68 263-317 (497)
374 COG4172 ABC-type uncharacteriz 99.0 9.5E-10 2.1E-14 81.1 5.3 58 3-67 275-340 (534)
375 KOG0064 Peroxisomal long-chain 99.0 1.7E-09 3.6E-14 81.9 6.2 52 5-65 482-533 (728)
376 cd03280 ABC_MutS2 MutS2 homolo 99.0 1.1E-09 2.3E-14 71.6 4.6 35 30-67 20-63 (200)
377 PRK06002 fliI flagellum-specif 98.9 2.3E-09 5.1E-14 78.8 6.7 54 4-67 139-192 (450)
378 COG4172 ABC-type uncharacteriz 98.9 1.6E-09 3.6E-14 79.9 5.7 55 3-66 5-62 (534)
379 cd03283 ABC_MutS-like MutS-lik 98.9 1.1E-09 2.4E-14 72.2 3.7 30 32-64 20-49 (199)
380 COG4148 ModC ABC-type molybdat 98.9 1.3E-09 2.8E-14 77.4 4.0 36 30-68 17-52 (352)
381 COG4138 BtuD ABC-type cobalami 98.9 2E-09 4.4E-14 72.8 4.7 50 3-66 2-51 (248)
382 cd03279 ABC_sbcCD SbcCD and ot 98.9 1.7E-09 3.7E-14 71.3 4.2 45 4-62 5-50 (213)
383 KOG0066 eIF2-interacting prote 98.9 1.3E-09 2.9E-14 81.7 4.1 56 3-67 585-640 (807)
384 cd03274 ABC_SMC4_euk Eukaryoti 98.9 2.2E-09 4.7E-14 71.3 4.4 41 5-61 6-46 (212)
385 cd01130 VirB11-like_ATPase Typ 98.9 9.3E-10 2E-14 71.3 1.9 35 30-67 18-52 (186)
386 cd03243 ABC_MutS_homologs The 98.8 4.9E-09 1.1E-13 68.5 4.7 30 30-62 22-51 (202)
387 cd03272 ABC_SMC3_euk Eukaryoti 98.8 1.7E-09 3.6E-14 71.8 2.3 24 37-63 23-46 (243)
388 KOG0054 Multidrug resistance-a 98.8 1.6E-08 3.5E-13 81.9 6.9 55 4-67 518-574 (1381)
389 TIGR01187 potA spermidine/putr 98.8 2.9E-09 6.3E-14 74.5 2.3 24 45-68 1-24 (325)
390 COG1245 Predicted ATPase, RNas 98.8 1.5E-08 3.3E-13 75.6 6.1 33 33-68 363-395 (591)
391 PRK10078 ribose 1,5-bisphospho 98.8 8.6E-09 1.9E-13 66.6 3.7 27 37-66 2-28 (186)
392 TIGR00767 rho transcription te 98.8 2.2E-08 4.8E-13 73.1 6.2 58 4-64 130-192 (415)
393 cd03240 ABC_Rad50 The catalyti 98.7 2.2E-08 4.7E-13 66.1 4.6 34 30-67 16-53 (204)
394 cd03282 ABC_MSH4_euk MutS4 hom 98.7 1.9E-08 4.2E-13 66.7 4.4 31 30-63 22-52 (204)
395 PRK09825 idnK D-gluconate kina 98.7 1.3E-08 2.8E-13 66.0 3.3 28 36-66 2-29 (176)
396 cd01136 ATPase_flagellum-secre 98.7 5.5E-08 1.2E-12 69.1 6.3 34 30-67 63-96 (326)
397 PRK07594 type III secretion sy 98.7 2.8E-08 6.1E-13 72.8 4.8 53 5-67 130-182 (433)
398 PRK07196 fliI flagellum-specif 98.7 2.5E-08 5.4E-13 73.1 4.5 34 30-67 149-182 (434)
399 COG2401 ABC-type ATPase fused 98.7 2.1E-08 4.6E-13 74.5 4.0 32 30-64 402-433 (593)
400 TIGR00235 udk uridine kinase. 98.7 1.2E-08 2.6E-13 66.9 2.2 28 35-65 4-31 (207)
401 cd03273 ABC_SMC2_euk Eukaryoti 98.6 2.3E-08 4.9E-13 67.2 2.9 27 37-66 25-51 (251)
402 PRK00300 gmk guanylate kinase; 98.6 3.6E-08 7.9E-13 63.8 3.5 28 35-65 3-30 (205)
403 cd03275 ABC_SMC1_euk Eukaryoti 98.6 5.6E-08 1.2E-12 65.4 4.3 25 39-66 24-48 (247)
404 PRK08149 ATP synthase SpaL; Va 98.6 1.1E-07 2.3E-12 69.8 5.6 34 30-67 145-178 (428)
405 TIGR03496 FliI_clade1 flagella 98.6 1.3E-07 2.8E-12 68.9 5.9 49 9-67 116-164 (411)
406 PF13555 AAA_29: P-loop contai 98.6 1.2E-07 2.7E-12 53.2 4.2 31 30-63 15-46 (62)
407 PRK09862 putative ATP-dependen 98.6 6.4E-08 1.4E-12 72.1 3.7 51 8-68 188-238 (506)
408 TIGR02546 III_secr_ATP type II 98.5 1.1E-07 2.4E-12 69.3 4.5 34 30-67 139-172 (422)
409 cd03271 ABC_UvrA_II The excisi 98.5 1E-07 2.2E-12 65.7 3.7 28 30-60 14-41 (261)
410 PRK05688 fliI flagellum-specif 98.5 2.2E-07 4.7E-12 68.6 5.4 34 30-67 162-195 (451)
411 TIGR02322 phosphon_PhnN phosph 98.5 1E-07 2.2E-12 60.7 3.2 26 37-65 1-26 (179)
412 TIGR03263 guanyl_kin guanylate 98.5 1.3E-07 2.9E-12 59.9 3.7 25 37-64 1-25 (180)
413 cd03287 ABC_MSH3_euk MutS3 hom 98.5 2E-07 4.3E-12 62.8 4.6 30 30-62 24-53 (222)
414 TIGR02788 VirB11 P-type DNA tr 98.5 6.7E-08 1.5E-12 67.3 2.4 35 30-67 137-171 (308)
415 TIGR01026 fliI_yscN ATPase Fli 98.5 1.8E-07 3.9E-12 68.6 4.7 34 30-67 157-190 (440)
416 TIGR02858 spore_III_AA stage I 98.5 1.4E-07 3E-12 65.3 3.8 27 41-67 112-138 (270)
417 cd03284 ABC_MutS1 MutS1 homolo 98.5 1.5E-07 3.2E-12 62.8 3.5 29 30-62 24-52 (216)
418 PRK08972 fliI flagellum-specif 98.5 2.7E-07 5.9E-12 68.0 5.1 35 30-67 155-189 (444)
419 PRK09270 nucleoside triphospha 98.5 9.2E-08 2E-12 63.7 2.4 30 35-67 31-60 (229)
420 PRK07721 fliI flagellum-specif 98.5 2.2E-07 4.9E-12 68.1 4.3 34 30-67 152-185 (438)
421 cd03285 ABC_MSH2_euk MutS2 hom 98.4 4.3E-07 9.3E-12 60.8 5.1 29 30-61 23-51 (222)
422 TIGR03498 FliI_clade3 flagella 98.4 2.7E-07 5.7E-12 67.4 4.4 35 30-67 133-167 (418)
423 TIGR00630 uvra excinuclease AB 98.4 2.7E-07 5.8E-12 72.7 4.6 26 30-58 626-651 (924)
424 PRK09099 type III secretion sy 98.4 4.2E-07 9E-12 66.9 5.2 34 30-67 157-190 (441)
425 PRK06793 fliI flagellum-specif 98.4 3.7E-07 8E-12 67.0 5.0 53 5-67 131-183 (432)
426 cd04104 p47_IIGP_like p47 (47- 98.4 2.8E-07 6.2E-12 59.9 3.8 26 41-66 2-27 (197)
427 PF13476 AAA_23: AAA domain; P 98.4 3.1E-07 6.7E-12 57.9 3.9 28 30-61 13-40 (202)
428 KOG0065 Pleiotropic drug resis 98.4 2.7E-07 5.8E-12 74.7 4.1 50 5-63 788-840 (1391)
429 TIGR03497 FliI_clade2 flagella 98.4 4.4E-07 9.6E-12 66.1 4.9 34 30-67 131-164 (413)
430 PRK06936 type III secretion sy 98.4 5.3E-07 1.2E-11 66.3 5.1 34 30-67 156-189 (439)
431 PRK05922 type III secretion sy 98.4 8.4E-07 1.8E-11 65.2 5.7 35 30-67 150-184 (434)
432 cd02023 UMPK Uridine monophosp 98.4 1.9E-07 4.2E-12 60.4 2.1 22 43-64 2-23 (198)
433 PRK15494 era GTPase Era; Provi 98.4 3.5E-07 7.5E-12 64.6 3.4 51 5-64 19-76 (339)
434 cd03276 ABC_SMC6_euk Eukaryoti 98.4 5.7E-07 1.2E-11 59.1 4.2 29 30-62 15-43 (198)
435 COG4170 SapD ABC-type antimicr 98.4 7.6E-07 1.6E-11 62.0 4.8 56 3-65 2-58 (330)
436 PRK00635 excinuclease ABC subu 98.3 7.5E-07 1.6E-11 73.9 5.4 26 30-58 614-639 (1809)
437 cd02025 PanK Pantothenate kina 98.3 1.9E-07 4E-12 62.5 1.5 23 43-65 2-24 (220)
438 cd02026 PRK Phosphoribulokinas 98.3 3.3E-07 7.2E-12 63.3 2.8 25 43-67 2-26 (273)
439 cd04155 Arl3 Arl3 subfamily. 98.3 5.7E-07 1.2E-11 56.0 3.6 23 42-64 16-38 (173)
440 PRK06820 type III secretion sy 98.3 8.9E-07 1.9E-11 65.1 5.1 34 30-67 157-190 (440)
441 PRK07960 fliI flagellum-specif 98.3 4.4E-07 9.6E-12 67.0 3.5 35 30-67 168-202 (455)
442 PRK05480 uridine/cytidine kina 98.3 3.6E-07 7.8E-12 59.7 2.5 27 35-64 4-30 (209)
443 smart00382 AAA ATPases associa 98.3 9.4E-07 2E-11 51.3 3.9 27 37-66 2-28 (148)
444 PRK08472 fliI flagellum-specif 98.3 5.7E-07 1.2E-11 66.1 3.5 34 30-67 151-184 (434)
445 cd03281 ABC_MSH5_euk MutS5 hom 98.3 9.3E-07 2E-11 58.8 4.0 29 30-61 20-50 (213)
446 cd04159 Arl10_like Arl10-like 98.3 8.6E-07 1.9E-11 53.2 3.4 22 43-64 2-23 (159)
447 PRK00349 uvrA excinuclease ABC 98.3 1.1E-06 2.4E-11 69.4 4.7 28 30-60 628-655 (943)
448 TIGR01360 aden_kin_iso1 adenyl 98.3 7.9E-07 1.7E-11 56.3 3.2 23 44-66 7-32 (188)
449 PRK13477 bifunctional pantoate 98.3 2.3E-06 5.1E-11 63.9 6.0 40 11-61 266-305 (512)
450 TIGR00554 panK_bact pantothena 98.3 4.9E-07 1.1E-11 63.3 2.2 25 38-65 63-87 (290)
451 cd03227 ABC_Class2 ABC-type Cl 98.3 1.4E-06 3E-11 55.4 4.0 29 30-61 14-42 (162)
452 PRK14721 flhF flagellar biosyn 98.2 7.6E-07 1.7E-11 65.1 2.9 27 34-63 188-214 (420)
453 COG1245 Predicted ATPase, RNas 98.2 2E-06 4.4E-11 64.5 5.1 48 9-67 79-127 (591)
454 cd01876 YihA_EngB The YihA (En 98.2 9.1E-07 2E-11 53.5 2.7 19 43-61 2-20 (170)
455 PF01926 MMR_HSR1: 50S ribosom 98.2 1.2E-06 2.5E-11 52.1 3.0 21 43-63 2-22 (116)
456 cd00071 GMPK Guanosine monopho 98.2 1.2E-06 2.5E-11 54.7 3.1 22 44-65 3-24 (137)
457 PRK08927 fliI flagellum-specif 98.2 1.9E-06 4.1E-11 63.5 4.6 35 30-67 151-185 (442)
458 PTZ00132 GTP-binding nuclear p 98.2 1.5E-06 3.2E-11 56.7 3.6 25 42-66 11-36 (215)
459 KOG0066 eIF2-interacting prote 98.2 1.7E-06 3.7E-11 65.3 4.3 48 5-62 265-312 (807)
460 PLN02796 D-glycerate 3-kinase 98.2 9.8E-07 2.1E-11 63.4 2.7 34 30-66 85-126 (347)
461 PRK00635 excinuclease ABC subu 98.2 1.8E-06 4E-11 71.6 4.5 43 8-60 939-981 (1809)
462 PF13207 AAA_17: AAA domain; P 98.2 1.5E-06 3.1E-11 51.8 2.9 20 43-62 2-21 (121)
463 cd01898 Obg Obg subfamily. Th 98.2 1.3E-06 2.8E-11 54.0 2.8 23 42-64 2-24 (170)
464 TIGR03185 DNA_S_dndD DNA sulfu 98.2 3.9E-06 8.4E-11 63.5 5.9 43 4-60 5-48 (650)
465 PRK10246 exonuclease subunit S 98.2 4.1E-06 8.8E-11 66.4 6.2 44 4-61 5-51 (1047)
466 TIGR00231 small_GTP small GTP- 98.2 2.5E-06 5.4E-11 50.5 3.8 25 41-65 2-26 (161)
467 PRK00098 GTPase RsgA; Reviewed 98.2 2.2E-06 4.7E-11 59.6 4.1 30 35-67 162-191 (298)
468 TIGR00101 ureG urease accessor 98.2 1.6E-06 3.5E-11 57.2 3.1 25 42-66 3-27 (199)
469 PF10662 PduV-EutP: Ethanolami 98.2 2.3E-06 4.9E-11 54.9 3.6 25 42-66 3-27 (143)
470 PRK06995 flhF flagellar biosyn 98.2 1.2E-06 2.6E-11 65.1 2.6 32 30-64 249-280 (484)
471 cd01854 YjeQ_engC YjeQ/EngC. 98.2 2E-06 4.4E-11 59.4 3.5 31 33-67 158-188 (287)
472 TIGR01069 mutS2 MutS2 family p 98.2 1.6E-06 3.5E-11 67.2 3.2 31 30-63 314-345 (771)
473 PF03193 DUF258: Protein of un 98.2 2.5E-06 5.3E-11 55.6 3.6 26 36-64 34-59 (161)
474 PRK07261 topology modulation p 98.1 1.9E-06 4.1E-11 55.4 2.9 22 42-63 2-23 (171)
475 PRK06315 type III secretion sy 98.1 2.5E-06 5.5E-11 62.8 3.9 32 30-65 158-189 (442)
476 PRK08118 topology modulation p 98.1 2E-06 4.2E-11 55.3 2.9 22 42-63 3-24 (167)
477 PF08477 Miro: Miro-like prote 98.1 2E-06 4.3E-11 50.7 2.7 25 42-66 1-25 (119)
478 cd04163 Era Era subfamily. Er 98.1 2.7E-06 5.8E-11 51.2 3.3 23 42-64 5-27 (168)
479 PF13304 AAA_21: AAA domain; P 98.1 4.9E-07 1.1E-11 56.5 0.0 21 44-64 3-23 (303)
480 TIGR00606 rad50 rad50. This fa 98.1 4.8E-06 1E-10 67.1 5.5 27 38-67 29-59 (1311)
481 PRK01889 GTPase RsgA; Reviewed 98.1 2.1E-06 4.6E-11 61.1 3.1 35 30-67 188-222 (356)
482 TIGR02168 SMC_prok_B chromosom 98.1 2.6E-06 5.7E-11 65.6 3.7 30 31-64 18-50 (1179)
483 cd01878 HflX HflX subfamily. 98.1 2.5E-06 5.4E-11 54.9 3.0 23 42-64 43-65 (204)
484 cd01888 eIF2_gamma eIF2-gamma 98.1 2.8E-06 6.2E-11 55.5 3.2 23 42-64 2-24 (203)
485 cd03286 ABC_MSH6_euk MutS6 hom 98.1 5.1E-06 1.1E-10 55.9 4.4 31 30-63 23-53 (218)
486 PRK10416 signal recognition pa 98.1 1.4E-06 3.1E-11 61.4 1.8 29 35-66 112-140 (318)
487 TIGR00618 sbcc exonuclease Sbc 98.1 5.5E-06 1.2E-10 65.3 5.2 28 30-61 20-47 (1042)
488 cd01128 rho_factor Transcripti 98.1 3.9E-06 8.5E-11 57.5 3.8 32 31-65 10-41 (249)
489 TIGR02524 dot_icm_DotB Dot/Icm 98.1 2.2E-06 4.7E-11 61.4 2.6 27 35-64 132-158 (358)
490 PRK04863 mukB cell division pr 98.1 4.9E-06 1.1E-10 68.2 4.9 34 30-67 21-54 (1486)
491 PRK00454 engB GTP-binding prot 98.1 3E-06 6.5E-11 53.7 2.9 29 35-63 19-47 (196)
492 smart00053 DYNc Dynamin, GTPas 98.1 3.5E-06 7.7E-11 57.6 3.4 24 41-64 27-50 (240)
493 cd04129 Rho2 Rho2 subfamily. 98.1 4.1E-06 8.9E-11 53.6 3.5 20 42-61 3-22 (187)
494 cd01131 PilT Pilus retraction 98.1 2.3E-06 5E-11 56.1 2.4 22 44-65 5-26 (198)
495 PRK03846 adenylylsulfate kinas 98.1 2.2E-06 4.9E-11 55.8 2.2 27 35-64 22-48 (198)
496 cd00879 Sar1 Sar1 subfamily. 98.1 3.7E-06 8E-11 53.3 3.0 29 30-62 13-41 (190)
497 PRK00064 recF recombination pr 98.0 5.8E-06 1.3E-10 58.8 3.9 31 30-64 17-47 (361)
498 PRK08533 flagellar accessory p 98.0 3.6E-06 7.7E-11 56.6 2.7 30 33-65 20-50 (230)
499 PRK14738 gmk guanylate kinase; 98.0 4.9E-06 1.1E-10 54.9 3.3 26 35-63 11-36 (206)
500 PRK14723 flhF flagellar biosyn 98.0 2.9E-06 6.2E-11 66.0 2.5 32 30-64 178-209 (767)
No 1
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.80 E-value=1.2e-19 Score=129.24 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=51.7
Q ss_pred cceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 2 EAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
...+++++++|.|++ ...+++ +||+|++||++ +|+|||||||||+||||||++.|++
T Consensus 3 ~~~l~i~~v~k~yg~-~~av~~------isl~i~~Gef~---~lLGPSGcGKTTlLR~IAGfe~p~~ 59 (352)
T COG3842 3 KPALEIRNVSKSFGD-FTAVDD------ISLDIKKGEFV---TLLGPSGCGKTTLLRMIAGFEQPSS 59 (352)
T ss_pred CceEEEEeeeeecCC-eeEEec------ceeeecCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 357899999999996 555666 99999999999 9999999999999999999999985
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=1.7e-19 Score=122.69 Aligned_cols=56 Identities=30% Similarity=0.372 Sum_probs=51.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++|+++|++|+|++ ..+|++ +|+++++||++ +|+||||||||||||||++|++|++
T Consensus 1 ~mi~i~~l~K~fg~-~~VLkg------i~l~v~~Gevv---~iiGpSGSGKSTlLRclN~LE~~~~ 56 (240)
T COG1126 1 MMIEIKNLSKSFGD-KEVLKG------ISLSVEKGEVV---VIIGPSGSGKSTLLRCLNGLEEPDS 56 (240)
T ss_pred CeEEEEeeeEEeCC-eEEecC------cceeEcCCCEE---EEECCCCCCHHHHHHHHHCCcCCCC
Confidence 37899999999998 567777 99999999999 9999999999999999999999975
No 3
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.79 E-value=2.3e-19 Score=127.34 Aligned_cols=56 Identities=29% Similarity=0.316 Sum_probs=51.1
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++|++|.|++.. ++++ +|++++.||++ +|+||||||||||||+||||+.|++
T Consensus 2 ~~i~l~~v~K~yg~~~-~l~~------i~l~i~~Gef~---vllGPSGcGKSTlLr~IAGLe~~~~ 57 (338)
T COG3839 2 AELELKNVRKSFGSFE-VLKD------VNLDIEDGEFV---VLLGPSGCGKSTLLRMIAGLEEPTS 57 (338)
T ss_pred cEEEEeeeEEEcCCce-eeec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4789999999999843 5666 99999999999 9999999999999999999999985
No 4
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.7e-19 Score=122.77 Aligned_cols=56 Identities=29% Similarity=0.363 Sum_probs=51.6
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|+. ..++++ +||++++||++ +|+||||||||||||+|+|++.|++
T Consensus 2 ~~l~i~~v~~~f~~-~~vl~~------i~L~v~~GEfv---silGpSGcGKSTLLriiAGL~~p~~ 57 (248)
T COG1116 2 ALLEIEGVSKSFGG-VEVLED------INLSVEKGEFV---AILGPSGCGKSTLLRLIAGLEKPTS 57 (248)
T ss_pred ceEEEEeeEEEeCc-eEEecc------ceeEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 46889999999998 667777 99999999999 9999999999999999999999974
No 5
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.78 E-value=5.6e-19 Score=121.70 Aligned_cols=56 Identities=30% Similarity=0.276 Sum_probs=51.2
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|++ +.++++ +||++++|+++ +|+||||||||||||+|+|++.|.+
T Consensus 1 ~~L~~~~ls~~y~~-~~il~~------ls~~i~~G~i~---~iiGpNG~GKSTLLk~l~g~l~p~~ 56 (258)
T COG1120 1 MMLEVENLSFGYGG-KPILDD------LSFSIPKGEIT---GILGPNGSGKSTLLKCLAGLLKPKS 56 (258)
T ss_pred CeeEEEEEEEEECC-eeEEec------ceEEecCCcEE---EEECCCCCCHHHHHHHHhccCCCCC
Confidence 36899999999996 567777 99999999999 9999999999999999999999863
No 6
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=9.3e-19 Score=120.43 Aligned_cols=58 Identities=29% Similarity=0.365 Sum_probs=53.2
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+.+++++|+++.|++. .++++ +||++++|+++ +|+||||||||||+|+|.|++.|.+
T Consensus 1 ~~~~i~v~nl~v~y~~~-~vl~~------i~l~v~~G~~~---~iiGPNGaGKSTLlK~iLGll~p~~ 58 (254)
T COG1121 1 MMPMIEVENLTVSYGNR-PVLED------ISLSVEKGEIT---ALIGPNGAGKSTLLKAILGLLKPSS 58 (254)
T ss_pred CCcEEEEeeeEEEECCE-eeeec------cEEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCcCCc
Confidence 56789999999999975 57777 99999999999 9999999999999999999999864
No 7
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.76 E-value=3.7e-18 Score=112.54 Aligned_cols=59 Identities=31% Similarity=0.391 Sum_probs=51.9
Q ss_pred CcceEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+.+++++++++.|++. ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 3 ~~~~l~~~~l~~~~~~~~~~~~~l~~------~s~~i~~Ge~~---~i~G~nGsGKSTLl~~i~Gl~~p~~ 64 (228)
T PRK10584 3 AENIVEVHHLKKSVGQGEHELSILTG------VELVVKRGETI---ALIGESGSGKSTLLAILAGLDDGSS 64 (228)
T ss_pred cCceEEEeeeEEEccCCCcceEEEec------cEEEEcCCCEE---EEECCCCCCHHHHHHHHHcCCCCCC
Confidence 35689999999999753 246777 99999999999 9999999999999999999998864
No 8
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.76 E-value=2.9e-18 Score=118.81 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=52.4
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|..++++++++++|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 4 ~~~~i~i~~l~k~~~~-~~~l~~------vsl~i~~Gei~---gllGpNGaGKSTLl~~l~Gl~~p~~ 61 (306)
T PRK13537 4 SVAPIDFRNVEKRYGD-KLVVDG------LSFHVQRGECF---GLLGPNGAGKTTTLRMLLGLTHPDA 61 (306)
T ss_pred CCceEEEEeEEEEECC-eEEEec------ceEEEeCCcEE---EEECCCCCCHHHHHHHHhcCCCCCc
Confidence 4568999999999986 456666 99999999999 9999999999999999999999874
No 9
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.6e-18 Score=117.97 Aligned_cols=58 Identities=29% Similarity=0.332 Sum_probs=52.5
Q ss_pred cceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 2 EAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++|+++++++.|++++..+++ ++|+|++||++ +|+|+||||||||||+|+|+.+|++
T Consensus 1 ~~~i~~~nl~k~yp~~~~aL~~------Vnl~I~~GE~V---aiIG~SGaGKSTLLR~lngl~d~t~ 58 (258)
T COG3638 1 EMMIEVKNLSKTYPGGHQALKD------VNLEINQGEMV---AIIGPSGAGKSTLLRSLNGLVDPTS 58 (258)
T ss_pred CceEEEeeeeeecCCCceeeee------EeEEeCCCcEE---EEECCCCCcHHHHHHHHhcccCCCc
Confidence 3589999999999665677777 99999999999 9999999999999999999998864
No 10
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.76 E-value=3.7e-18 Score=115.36 Aligned_cols=58 Identities=28% Similarity=0.361 Sum_probs=52.9
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|.++++++++++.|++ ..++++ ++|++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ~~~~l~~~~l~~~~~~-~~vl~~------vs~~i~~Ge~~---~I~G~NGsGKSTLl~~i~Gl~~p~~ 58 (251)
T PRK09544 1 MTSLVSLENVSVSFGQ-RRVLSD------VSLELKPGKIL---TLLGPNGAGKSTLVRVVLGLVAPDE 58 (251)
T ss_pred CCcEEEEeceEEEECC-ceEEEe------EEEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 6678999999999986 457777 99999999999 9999999999999999999998864
No 11
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=3.8e-18 Score=116.28 Aligned_cols=59 Identities=31% Similarity=0.281 Sum_probs=52.9
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|.++++++++++.|+....++++ +||++++||++ +|+|+||||||||+++|+|+.+|++
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~l~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 59 (274)
T PRK13647 1 MDNIIEVEDLHFRYKDGTKALKG------LSLSIPEGSKT---ALLGPNGAGKSTLLLHLNGIYLPQR 59 (274)
T ss_pred CCceEEEEEEEEEeCCCCeeeee------EEEEEcCCCEE---EEECCCCCcHHHHHHHHhcCCCCCc
Confidence 66789999999999643457777 99999999999 9999999999999999999999864
No 12
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=3.9e-18 Score=114.03 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=52.0
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
|+.+++++++++.|+. ..++++ +||++.+||++ +|+||||||||||+++|+|+..|+
T Consensus 1 ~~~~l~~~~l~~~~~~-~~~l~~------is~~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~~~ 57 (253)
T PRK14267 1 MKFAIETVNLRVYYGS-NHVIKG------VDLKIPQNGVF---ALMGPSGCGKSTLLRTFNRLLELN 57 (253)
T ss_pred CcceEEEEeEEEEeCC-eeeeec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhccCCcc
Confidence 7789999999999986 457777 99999999999 999999999999999999998873
No 13
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.75 E-value=4.4e-18 Score=111.44 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=49.9
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|++. ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 57 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDN------LNFHITKGEMV---FLVGHSGAGKSTFLKLILGIEKPTR 57 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEe------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 47899999999653 357777 99999999999 9999999999999999999998863
No 14
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.75 E-value=4.3e-18 Score=117.86 Aligned_cols=59 Identities=27% Similarity=0.289 Sum_probs=52.4
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|..++++++++|.|+....++++ +||++++|+++ |++||||||||||+|+|+|+.+|++
T Consensus 1 ~~~~i~~~~l~k~~~~~~~~l~~------vs~~i~~Gei~---gllG~NGAGKTTllk~l~gl~~p~~ 59 (293)
T COG1131 1 MIEVIEVRNLTKKYGGDKTALDG------VSFEVEPGEIF---GLLGPNGAGKTTLLKILAGLLKPTS 59 (293)
T ss_pred CCceeeecceEEEeCCCCEEEec------eeEEEcCCeEE---EEECCCCCCHHHHHHHHhCCcCCCc
Confidence 55678999999999932456666 99999999999 9999999999999999999999974
No 15
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.75 E-value=6.3e-18 Score=113.85 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=52.4
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
|.++++++++++.|++ ..++++ +||++.+||++ +|+||||||||||+++|+|+..|+
T Consensus 1 ~~~~l~~~nl~~~~~~-~~il~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~i~G~~~p~ 57 (262)
T PRK09984 1 MQTIIRVEKLAKTFNQ-HQALHA------VDLNIHHGEMV---ALLGPSGSGKSTLLRHLSGLITGD 57 (262)
T ss_pred CCcEEEEeeEEEEeCC-eEEEec------ceEEEcCCcEE---EEECCCCCCHHHHHHHHhccCCCC
Confidence 7789999999999986 456777 99999999999 999999999999999999999875
No 16
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.75 E-value=6.5e-18 Score=113.58 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=52.1
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+.+++++++++.|++ ..++++ +||++++|+++ +|+|+||||||||+++|+|+.+|++
T Consensus 3 ~~~~l~~~~l~~~~~~-~~il~~------is~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 60 (258)
T PRK11701 3 DQPLLSVRGLTKLYGP-RKGCRD------VSFDLYPGEVL---GIVGESGSGKTTLLNALSARLAPDA 60 (258)
T ss_pred CCceEEEeeeEEEcCC-ceeeee------eeEEEeCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 3458999999999986 457777 99999999999 9999999999999999999998864
No 17
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.75 E-value=5.4e-18 Score=110.73 Aligned_cols=56 Identities=27% Similarity=0.329 Sum_probs=49.4
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|+....++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ~l~~~~l~~~~~~~~~il~~------is~~i~~G~~~---~l~G~nGsGKSTLl~~i~Gl~~~~~ 56 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHD------VSLHIRKGEFL---FLTGPSGAGKTTLLKLLYGALTPSR 56 (214)
T ss_pred CEEEEeeeEEeCCCceeecc------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 47899999999532457777 99999999999 9999999999999999999998863
No 18
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=8.3e-18 Score=111.80 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=51.0
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~------~sl~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~~~~ 57 (241)
T PRK10895 2 ATLTAKNLAKAYKG-RRVVED------VSLTVNSGEIV---GLLGPNGAGKTTTFYMVVGIVPRDA 57 (241)
T ss_pred ceEEEeCcEEEeCC-EEEEee------eeEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 47999999999986 567777 99999999999 9999999999999999999998863
No 19
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=9.1e-18 Score=111.66 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=50.4
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 2 ~l~~~~l~~~~~~-~~il~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 56 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDD------VSLDIPSGELV---ALLGPSGSGKTTLLRLIAGLERPDS 56 (239)
T ss_pred EEEEEeEEEEECC-EEeeee------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 6899999999986 567777 99999999999 9999999999999999999998863
No 20
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.74 E-value=7.6e-18 Score=112.34 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=50.2
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 57 (250)
T PRK11264 3 AIEVKNLVKKFHG-QTVLHG------IDLEVKPGEVV---AIIGPSGSGKTTLLRCINLLEQPEA 57 (250)
T ss_pred cEEEeceEEEECC-eeeecc------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 7999999999986 457777 99999999999 9999999999999999999998863
No 21
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.74 E-value=7.8e-18 Score=110.22 Aligned_cols=55 Identities=31% Similarity=0.311 Sum_probs=48.7
Q ss_pred EEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++. ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~------~s~~i~~G~~~---~l~G~nGsGKSTLl~~i~Gl~~~~~ 58 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKG------VSLSIEKGEFV---AIVGPSGSGKSTLLNILGGLDRPTS 58 (218)
T ss_pred CeEeeeEEEecCCCcceeEEee------eEEEEcCCCEE---EEEcCCCCCHHHHHHHHhCCcCCCc
Confidence 4689999999752 457777 99999999999 9999999999999999999998863
No 22
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=8.2e-18 Score=111.48 Aligned_cols=54 Identities=28% Similarity=0.370 Sum_probs=48.9
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~p~~ 54 (235)
T cd03261 1 IELRGLTKSFGG-RTVLKG------VDLDVRRGEIL---AIIGPSGSGKSTLLRLIVGLLRPDS 54 (235)
T ss_pred CeEEEEEEEECC-EEEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 478999999986 457777 99999999999 9999999999999999999998864
No 23
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=9.1e-18 Score=114.56 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=53.0
Q ss_pred CcceEEEeceeEEccCc-----eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQA-----AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~-----~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+.++++++++++|++. ..++++ ++|++++||++ +|+|+||||||||+++|+|+..|++
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~~~~~vl~~------vs~~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~~~~ 64 (280)
T PRK13633 1 MNEMIKCKNVSYKYESNEESTEKLALDD------VNLEVKKGEFL---VILGRNGSGKSTIAKHMNALLIPSE 64 (280)
T ss_pred CCceEEEeeeEEEcCCCCCCCCcceeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 78899999999999742 347777 99999999999 9999999999999999999998864
No 24
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.74 E-value=9.3e-18 Score=111.08 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=51.2
Q ss_pred cceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 2 EAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 5 ~~~i~~~~l~~~~~~-~~il~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 61 (225)
T PRK10247 5 SPLLQLQNVGYLAGD-AKILNN------ISFSLRAGEFK---LITGPSGCGKSTLLKIVASLISPTS 61 (225)
T ss_pred CceEEEeccEEeeCC-ceeeec------cEEEEcCCCEE---EEECCCCCCHHHHHHHHhcccCCCC
Confidence 357999999999986 457777 99999999999 9999999999999999999998864
No 25
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.2e-17 Score=110.66 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=50.7
Q ss_pred ceEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|++. ..++++ +||++++||++ +|+||||||||||+++|+|+++|++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~------isl~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~~~~ 63 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHN------VSFSIGEGEMM---AIVGSSGSGKSTLLHLLGGLDTPTS 63 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEe------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhcCCCCCc
Confidence 478999999999742 357777 99999999999 9999999999999999999998864
No 26
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=8.5e-18 Score=110.50 Aligned_cols=54 Identities=26% Similarity=0.253 Sum_probs=49.0
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ ..++++ ++|++++||++ +|+||||||||||+++|+|++.|++
T Consensus 1 i~~~~~~~~~~~-~~il~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~i~G~~~~~~ 54 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRG------VSFRVRRGEIF---GLLGPNGAGKTTTIKMLTTLLKPTS 54 (220)
T ss_pred CEEEEEEEEECC-EEeeec------eeEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 478999999986 457777 99999999999 9999999999999999999998864
No 27
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.74 E-value=1.1e-17 Score=115.35 Aligned_cols=56 Identities=29% Similarity=0.312 Sum_probs=51.0
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 3 ~~i~~~~l~~~~~~-~~~l~~------vsl~i~~Ge~~---~l~G~NGaGKSTLl~~l~Gl~~p~~ 58 (303)
T TIGR01288 3 VAIDLVGVSKSYGD-KVVVND------LSFTIARGECF---GLLGPNGAGKSTIARMLLGMISPDR 58 (303)
T ss_pred cEEEEEeEEEEeCC-eEEEcc------eeEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 57899999999986 456766 99999999999 9999999999999999999998864
No 28
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.2e-17 Score=111.78 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=52.4
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
|.++++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|+
T Consensus 1 ~~~~l~~~~l~~~~~~-~~il~~------~s~~i~~G~~~---~i~G~nGsGKSTLl~~l~Gl~~~~ 57 (251)
T PRK14249 1 MDPKIKIRGVNFFYHK-HQVLKN------INMDFPERQIT---AIIGPSGCGKSTLLRALNRMNDIV 57 (251)
T ss_pred CCceEEEEEEEEEECC-eeEecc------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcccCcc
Confidence 7889999999999986 457777 99999999999 999999999999999999999885
No 29
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.73 E-value=1.2e-17 Score=117.65 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=51.0
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++|++++|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 40 ~~i~i~nl~k~y~~-~~~l~~------is~~i~~Gei~---gLlGpNGaGKSTLl~~L~Gl~~p~~ 95 (340)
T PRK13536 40 VAIDLAGVSKSYGD-KAVVNG------LSFTVASGECF---GLLGPNGAGKSTIARMILGMTSPDA 95 (340)
T ss_pred eeEEEEEEEEEECC-EEEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHHcCCCCCc
Confidence 37999999999987 456666 99999999999 9999999999999999999999874
No 30
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.73 E-value=9.6e-18 Score=110.06 Aligned_cols=56 Identities=29% Similarity=0.367 Sum_probs=49.7
Q ss_pred eEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|+.. ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 59 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDD------VSFSIKKGETL---GLVGESGSGKSTLARAILGLLKPTS 59 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecC------ceeEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 47899999999764 256777 99999999999 9999999999999999999998863
No 31
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.73 E-value=1.2e-17 Score=110.88 Aligned_cols=55 Identities=29% Similarity=0.241 Sum_probs=50.1
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ~l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~p~~ 55 (236)
T TIGR03864 1 ALEVAGLSFAYGA-RRALDD------VSFTVRPGEFV---ALLGPNGAGKSTLFSLLTRLYVAQE 55 (236)
T ss_pred CEEEEeeEEEECC-EEEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCcCCCc
Confidence 5789999999986 467777 99999999999 9999999999999999999998874
No 32
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.1e-17 Score=112.95 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=50.1
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ml~~~~l~~~~~~-~~il~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 55 (255)
T PRK11248 1 MLQISHLYADYGG-KPALED------INLTLESGELL---VVLGPSGCGKTTLLNLIAGFVPYQH 55 (255)
T ss_pred CEEEEEEEEEeCC-eeeEee------eeEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4789999999976 457777 99999999999 9999999999999999999998864
No 33
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.73 E-value=1.4e-17 Score=112.92 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=51.0
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 61 (269)
T PRK11831 6 NLVDMRGVSFTRGN-RCIFDN------ISLTVPRGKIT---AIMGPSGIGKTTLLRLIGGQIAPDH 61 (269)
T ss_pred ceEEEeCeEEEECC-EEEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 57899999999976 457777 99999999999 9999999999999999999998863
No 34
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=1.4e-17 Score=108.50 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=50.1
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 1 ml~~~~l~~~~~~-~~il~~------~s~~i~~Ge~~---~l~G~nGsGKSTLl~~i~G~~~~~~ 55 (200)
T PRK13540 1 MLDVIELDFDYHD-QPLLQQ------ISFHLPAGGLL---HLKGSNGAGKTTLLKLIAGLLNPEK 55 (200)
T ss_pred CEEEEEEEEEeCC-eeEEee------eeEEECCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4789999999986 457777 99999999999 9999999999999999999998864
No 35
>PRK10908 cell division protein FtsE; Provisional
Probab=99.73 E-value=1.2e-17 Score=109.87 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=49.4
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|.....++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 56 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQG------VTFHMRPGEMA---FLTGHSGAGKSTLLKLICGIERPSA 56 (222)
T ss_pred CEEEEeeEEEecCCCeEEee------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 47899999999322457777 99999999999 9999999999999999999998864
No 36
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=1.4e-17 Score=108.81 Aligned_cols=55 Identities=22% Similarity=0.197 Sum_probs=50.0
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|+. ..++++ +||++++||++ +|+|+||||||||+++|+|++.|++
T Consensus 1 ~l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~p~~ 55 (204)
T PRK13538 1 MLEARNLACERDE-RILFSG------LSFTLNAGELV---QIEGPNGAGKTSLLRILAGLARPDA 55 (204)
T ss_pred CeEEEEEEEEECC-EEEEec------ceEEECCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4789999999986 457777 99999999999 9999999999999999999998864
No 37
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.73 E-value=8.6e-18 Score=111.52 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=49.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|+....++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 ~l~~~~l~~~~~~~~~il~~------vs~~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~~~~ 56 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKN------INLNINPGEFV---AIIGPSGAGKSTLLRCINRLVEPSS 56 (243)
T ss_pred CeEEEeeeeecCCCcceeec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhCCcCCCc
Confidence 47899999999722456777 99999999999 9999999999999999999998863
No 38
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=9.2e-18 Score=113.90 Aligned_cols=56 Identities=27% Similarity=0.273 Sum_probs=49.2
Q ss_pred eEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++|.|..+ ..++++ ++|+|++||++ +|+|||||||||||++|+|+++|++
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~------v~l~i~~Ge~v---aI~GpSGSGKSTLLniig~ld~pt~ 59 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKD------VNLEIEAGEFV---AIVGPSGSGKSTLLNLLGGLDKPTS 59 (226)
T ss_pred CcEEeeeEEEeccCCcceEeccc------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhcccCCCC
Confidence 46799999999754 245555 99999999999 9999999999999999999999974
No 39
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=1.8e-17 Score=108.60 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=50.2
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|+. ..++++ ++|++++||++ +|+|+||||||||+++|+|+..|++
T Consensus 2 ~l~~~~l~~~~~~-~~~l~~------is~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 56 (207)
T PRK13539 2 MLEGEDLACVRGG-RVLFSG------LSFTLAAGEAL---VLTGPNGSGKTTLLRLIAGLLPPAA 56 (207)
T ss_pred EEEEEeEEEEECC-eEEEec------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 7899999999986 456776 99999999999 9999999999999999999998863
No 40
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.73 E-value=1.2e-17 Score=121.25 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=53.0
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|.++++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 ~~~~i~~~~l~~~~~~-~~~l~~------is~~i~~Ge~~---~l~G~NGsGKSTLl~~l~G~~~p~~ 58 (501)
T PRK10762 1 MQALLQLKGIDKAFPG-VKALSG------AALNVYPGRVM---ALVGENGAGKSTMMKVLTGIYTRDA 58 (501)
T ss_pred CCceEEEeeeEEEeCC-eEEeee------eeEEEcCCeEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 6788999999999986 457777 99999999999 9999999999999999999998864
No 41
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.4e-17 Score=112.00 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=50.9
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
|..++++++++++|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..|
T Consensus 1 ~~~~l~i~~v~~~~~~-~~~l~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~laGl~~~ 56 (258)
T PRK14241 1 MAKRIDVKDLNIYYGS-FHAVED------VNLNIEPRSVT---AFIGPSGCGKSTVLRTLNRMHEV 56 (258)
T ss_pred CCccEEEeeEEEEECC-Eeeeee------eeEEEcCCcEE---EEECCCCCCHHHHHHHHhccCCc
Confidence 5678999999999986 457777 99999999999 99999999999999999999874
No 42
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.73 E-value=1.1e-17 Score=109.53 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=48.8
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 54 (222)
T cd03224 1 LEVENLNAGYGK-SQILFG------VSLTVPEGEIV---ALLGRNGAGKTTLLKTIMGLLPPRS 54 (222)
T ss_pred CEEeeEEeecCC-eeEeee------eeEEEcCCeEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 478999999986 457777 99999999999 9999999999999999999998864
No 43
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.5e-17 Score=111.08 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=51.6
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
|..+++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|++.|+
T Consensus 1 ~~~~l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~i~G~~~~~ 57 (252)
T PRK14272 1 MTLLLSAQDVNIYYGD-KQAVKN------VNLDVQRGTVN---ALIGPSGCGKTTFLRAINRMHDLT 57 (252)
T ss_pred CeEEEEEeeeEEEECC-EEeecc------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhccCCCC
Confidence 6678999999999986 467777 99999999999 999999999999999999998763
No 44
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.1e-17 Score=110.56 Aligned_cols=56 Identities=29% Similarity=0.382 Sum_probs=50.1
Q ss_pred eEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|++. ..++++ ++|++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~------~s~~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~~~~ 59 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKD------VSLSVPKGEIF---GIIGRSGAGKSTLIRCINGLERPTS 59 (233)
T ss_pred CeEEecceEEccCCCCceeeeec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 47899999999764 157777 99999999999 9999999999999999999998864
No 45
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.73 E-value=1.3e-17 Score=108.69 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=48.7
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++...++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 l~~~~l~~~~~~~~~~l~~------~sl~i~~G~~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 55 (214)
T cd03292 1 IEFINVTKTYPNGTAALDG------INISISAGEFV---FLVGPSGAGKSTLLKLIYKEELPTS 55 (214)
T ss_pred CEEEEEEEEeCCCceeeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCc
Confidence 4689999999653457777 99999999999 9999999999999999999998864
No 46
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.73 E-value=1.3e-17 Score=109.19 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=49.7
Q ss_pred eEEEeceeEEccCce---EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAA---ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~---~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|++.. .++++ ++|++++||++ +|+|+||||||||+++|+|+..|++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~------~sl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 59 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDG------VSFTVKPGEVT---GLLGPNGAGKTTTLRMLAGLLEPDA 59 (218)
T ss_pred CeEEEEEEEecCCCCccceeecc------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhCCcCCCC
Confidence 478999999997631 57777 99999999999 9999999999999999999998864
No 47
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.5e-17 Score=113.28 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=50.9
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++...++++ ++|++++||++ +|+|+||||||||+++|+|+..|++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~------vsl~i~~Ge~~---~i~G~NGsGKSTLl~~l~Gl~~p~~ 58 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNN------INFIAPRNSRI---AVIGPNGAGKSTLFRHFNGILKPTS 58 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeE------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCc
Confidence 578999999999643456777 99999999999 9999999999999999999998874
No 48
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.3e-17 Score=108.97 Aligned_cols=54 Identities=28% Similarity=0.298 Sum_probs=48.7
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 l~~~~l~~~~~~-~~il~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~p~~ 54 (213)
T cd03259 1 LELKGLSKTYGS-VRALDD------LSLTVEPGEFL---ALLGPSGCGKTTLLRLIAGLERPDS 54 (213)
T ss_pred CeeeeeEEEeCC-eeeecc------eeEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 468999999976 457777 99999999999 9999999999999999999998864
No 49
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.1e-17 Score=110.29 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=50.5
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|++ ..++++ +||++.+|+++ +|+||||||||||+++|+|+.+|++
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 57 (241)
T PRK14250 2 NEIEFKEVSYSSFG-KEILKD------ISVKFEGGAIY---TIVGPSGAGKSTLIKLINRLIDPTE 57 (241)
T ss_pred ceEEEEeEEEEeCC-eeeeee------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 36889999999976 457777 99999999999 9999999999999999999998864
No 50
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.72 E-value=1.4e-17 Score=109.91 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=48.7
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~p~~ 54 (232)
T cd03218 1 LRAENLSKRYGK-RKVVNG------VSLSVKQGEIV---GLLGPNGAGKTTTFYMIVGLVKPDS 54 (232)
T ss_pred CeEEEEEEEeCC-EEeecc------ceeEecCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 478999999986 456766 99999999999 9999999999999999999998864
No 51
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.72 E-value=2.2e-17 Score=109.64 Aligned_cols=56 Identities=27% Similarity=0.241 Sum_probs=50.7
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|++ ..++++ +||++++|+++ +|+|+||||||||+++|+|+..|++
T Consensus 1 ~~i~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~p~~ 56 (242)
T TIGR03411 1 PILYLEGLSVSFDG-FKALND------LSLYVDPGELR---VIIGPNGAGKTTMMDVITGKTRPDE 56 (242)
T ss_pred CeEEEEeeEEEcCC-eEEeee------eeEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 36899999999986 457777 99999999999 9999999999999999999998864
No 52
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.72 E-value=2.1e-17 Score=117.96 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=52.1
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|.++++++++++.|++ ..++++ ++|++++||++ +|+|||||||||||++|+|+++|++
T Consensus 11 ~~~~L~l~~l~~~~~~-~~~l~~------vsl~i~~Ge~~---~LlGpsGsGKSTLLr~IaGl~~p~~ 68 (375)
T PRK09452 11 LSPLVELRGISKSFDG-KEVISN------LDLTINNGEFL---TLLGPSGCGKTTVLRLIAGFETPDS 68 (375)
T ss_pred CCceEEEEEEEEEECC-eEEEee------eEEEEeCCCEE---EEECCCCCcHHHHHHHHhCCCCCCc
Confidence 4568999999999986 456666 99999999999 9999999999999999999999874
No 53
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.72 E-value=7e-18 Score=117.56 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=50.1
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++||+|.|++. .++++ +||+|++||++ +++|||||||||+|+||++|..|++
T Consensus 1 MI~~~nvsk~y~~~-~av~~------v~l~I~~gef~---vliGpSGsGKTTtLkMINrLiept~ 55 (309)
T COG1125 1 MIEFENVSKRYGNK-KAVDD------VNLTIEEGEFL---VLIGPSGSGKTTTLKMINRLIEPTS 55 (309)
T ss_pred CceeeeeehhcCCc-eeeee------eeEEecCCeEE---EEECCCCCcHHHHHHHHhcccCCCC
Confidence 68999999999974 44555 99999999999 9999999999999999999999985
No 54
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.72 E-value=2.1e-17 Score=105.31 Aligned_cols=54 Identities=31% Similarity=0.327 Sum_probs=48.9
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ ..++.+ ++|++++||++ +|+||||||||||+++|+|+..|++
T Consensus 1 l~~~~l~~~~~~-~~vl~~------i~~~i~~Ge~~---~l~G~nGsGKSTLl~~i~G~~~~~~ 54 (163)
T cd03216 1 LELRGITKRFGG-VKALDG------VSLSVRRGEVH---ALLGENGAGKSTLMKILSGLYKPDS 54 (163)
T ss_pred CEEEEEEEEECC-eEEEee------eEEEEeCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 468999999986 457777 99999999999 9999999999999999999998863
No 55
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2e-17 Score=107.94 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=48.6
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ ..++++ ++|++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~------v~~~i~~G~~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (210)
T cd03269 1 LEVENVTKRFGR-VTALDD------ISFSVEKGEIF---GLLGPNGAGKTTTIRMILGIILPDS 54 (210)
T ss_pred CEEEEEEEEECC-EEEEee------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 468999999976 457777 99999999999 9999999999999999999998863
No 56
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.5e-17 Score=110.61 Aligned_cols=55 Identities=22% Similarity=0.180 Sum_probs=50.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++|++ ..++++ +||++++|+++ +|+|+||||||||+++|+|+.+|++
T Consensus 2 ~l~~~~l~~~~~~-~~il~~------is~~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~~~~ 56 (255)
T PRK11231 2 TLRTENLTVGYGT-KRILND------LSLSLPTGKIT---ALIGPNGCGKSTLLKCFARLLTPQS 56 (255)
T ss_pred EEEEEeEEEEECC-EEEEee------eeeEEcCCcEE---EEECCCCCCHHHHHHHHhCCcCCCC
Confidence 6899999999986 567777 99999999999 9999999999999999999998863
No 57
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.72 E-value=1.7e-17 Score=108.08 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=48.6
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|+. ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~------~s~~i~~G~~~---~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKG------IDLTVKKGEVV---VIIGPSGSGKSTLLRCINLLEEPDS 54 (213)
T ss_pred CEEEEEEEEECC-eEeecC------ceEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 468999999986 456766 99999999999 9999999999999999999998863
No 58
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.72 E-value=1.7e-17 Score=108.70 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=48.7
Q ss_pred EEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+++++++.|++. ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 1 l~~~~l~~~~~~~~~~il~~------is~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 56 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDD------LSLNVYKGEIF---GLLGHNGAGKTTTLKMLTGELRPTS 56 (220)
T ss_pred CEEEeeEEEeCCCCceeecc------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4789999999752 356777 99999999999 9999999999999999999998863
No 59
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.4e-17 Score=109.62 Aligned_cols=55 Identities=27% Similarity=0.229 Sum_probs=50.2
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 2 ~l~~~~l~~~~~~-~~il~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 56 (242)
T PRK11124 2 SIQLNGINCFYGA-HQALFD------ITLDCPQGETL---VLLGPSGAGKSSLLRVLNLLEMPRS 56 (242)
T ss_pred EEEEEeeEEEECC-eeeEee------eeeEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 6899999999986 457777 99999999999 9999999999999999999998863
No 60
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.4e-17 Score=111.99 Aligned_cols=57 Identities=26% Similarity=0.315 Sum_probs=50.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++...++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 5 ~~l~~~~l~~~~~~~~~il~~------vsl~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~p~~ 61 (272)
T PRK15056 5 AGIVVNDVTVTWRNGHTALRD------ASFTVPGGSIA---ALVGVNGSGKSTLFKALMGFVRLAS 61 (272)
T ss_pred ceEEEEeEEEEecCCcEEEEe------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 378999999999643457777 99999999999 9999999999999999999998864
No 61
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.4e-17 Score=110.17 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=51.0
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..++++ ++|++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~------is~~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~~~~ 59 (255)
T PRK11300 4 PLLSVSGLMMRFGG-LLAVNN------VNLEVREQEIV---SLIGPNGAGKTTVFNCLTGFYKPTG 59 (255)
T ss_pred ceEEEeeEEEEECC-EEEEEe------eeeEEcCCeEE---EEECCCCCCHHHHHHHHhCCcCCCc
Confidence 37899999999986 567777 99999999999 9999999999999999999998864
No 62
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.72 E-value=2.2e-17 Score=110.42 Aligned_cols=56 Identities=25% Similarity=0.242 Sum_probs=50.5
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 57 (253)
T TIGR02323 2 PLLQVSGLSKSYGG-GKGCRD------VSFDLYPGEVL---GIVGESGSGKSTLLGCLAGRLAPDH 57 (253)
T ss_pred ceEEEeeeEEEeCC-ceEeec------ceEEEeCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 47899999999986 456766 99999999999 9999999999999999999998864
No 63
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.4e-17 Score=112.92 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=49.8
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ml~~~~l~~~~~~-~~il~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 55 (271)
T PRK13638 1 MLATSDLWFRYQD-EPVLKG------LNLDFSLSPVT---GLVGANGCGKSTLFMNLSGLLRPQK 55 (271)
T ss_pred CeEEEEEEEEcCC-cccccc------eEEEEcCCCEE---EEECCCCCCHHHHHHHHcCCCCCCc
Confidence 4889999999986 456766 99999999999 9999999999999999999999864
No 64
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.72 E-value=2.5e-17 Score=107.99 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=49.3
Q ss_pred eEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|++. ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~------isl~i~~G~~~---~i~G~nGsGKSTLl~~i~G~~~~~~ 59 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKG------VSLSIGKGEIV---AIVGSSGSGKSTLLHLLGGLDNPTS 59 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEee------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 47899999999642 357777 99999999999 9999999999999999999998863
No 65
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.72 E-value=2e-17 Score=109.21 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=48.8
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+.+|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (230)
T TIGR03410 1 LEVSNLNVYYGQ-SHILRG------VSLEVPKGEVT---CVLGRNGVGKTTLLKTLMGLLPVKS 54 (230)
T ss_pred CEEEeEEEEeCC-eEEecc------eeeEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 478999999986 457777 99999999999 9999999999999999999998864
No 66
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.5e-17 Score=112.64 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=51.1
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|+....++++ +||++++||++ +|+|+||||||||+++|+|+.+|++
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~------vs~~i~~Ge~~---~i~G~nGaGKSTLl~~i~Gl~~p~~ 60 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKG------ININIKKGEVT---AILGGNGAGKSTLFQNLNGILKPSS 60 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCc
Confidence 489999999999643457777 99999999999 9999999999999999999998864
No 67
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.5e-17 Score=109.26 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=50.7
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~p~~ 59 (237)
T PRK11614 4 VMLSFDKVSAHYGK-IQALHE------VSLHINQGEIV---TLIGANGAGKTTLLGTLCGDPRATS 59 (237)
T ss_pred cEEEEEeEEEeeCC-ceeeee------eEEEEcCCcEE---EEECCCCCCHHHHHHHHcCCCCCCC
Confidence 47899999999986 456777 99999999999 9999999999999999999998864
No 68
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.9e-17 Score=112.84 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=49.8
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|+....++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 56 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALEN------INLVIKKGEYI---GIIGKNGSGKSTLALHLNGLLRPQK 56 (274)
T ss_pred CEEEEEEEEEcCCCCceeee------eEEEEeCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 47899999999643457777 99999999999 9999999999999999999998863
No 69
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.1e-17 Score=120.02 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=52.1
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|.++++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 2 ~~~~l~~~~l~~~~~~-~~il~~------vs~~i~~Ge~~---~liG~nGsGKSTLl~~i~Gl~~p~~ 59 (510)
T PRK09700 2 ATPYISMAGIGKSFGP-VHALKS------VNLTVYPGEIH---ALLGENGAGKSTLMKVLSGIHEPTK 59 (510)
T ss_pred CCceEEEeeeEEEcCC-eEEeee------eeEEEcCCcEE---EEECCCCCCHHHHHHHHcCCcCCCc
Confidence 4568999999999986 456777 99999999999 9999999999999999999998863
No 70
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.6e-17 Score=112.39 Aligned_cols=59 Identities=24% Similarity=0.268 Sum_probs=52.2
Q ss_pred CcceEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|..+++++++++.|+.. ..++++ +||++++||++ +|+|+||||||||+++|+|+.+|++
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~~~l~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 61 (279)
T PRK13650 1 MSNIIEVKNLTFKYKEDQEKYTLND------VSFHVKQGEWL---SIIGHNGSGKSTTVRLIDGLLEAES 61 (279)
T ss_pred CCceEEEEeEEEEcCCCCcCeeeee------eEEEEeCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 66789999999999742 346777 99999999999 9999999999999999999999874
No 71
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.4e-17 Score=114.37 Aligned_cols=57 Identities=25% Similarity=0.247 Sum_probs=51.3
Q ss_pred ceEEEeceeEEccCce---EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAA---ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~---~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++|+++.|+.+. .++++ +||++++||++ +|+|+||||||||.|+|+|+++|++
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~------VS~~i~~Ge~l---givGeSGsGKSTL~r~l~Gl~~p~~ 61 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNN------VSLEIERGETL---GIVGESGSGKSTLARLLAGLEKPSS 61 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcc------eeEEecCCCEE---EEEcCCCCCHHHHHHHHhcccCCCC
Confidence 5889999999998764 25555 99999999999 9999999999999999999999974
No 72
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.72 E-value=2.7e-17 Score=116.39 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=51.2
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++++|++ ..++++ ++|++++||++ +|+|||||||||||++|+|+++|++
T Consensus 3 ~~l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~l~GpsGsGKSTLLr~iaGl~~p~~ 58 (353)
T TIGR03265 3 PYLSIDNIRKRFGA-FTALKD------ISLSVKKGEFV---CLLGPSGCGKTTLLRIIAGLERQTA 58 (353)
T ss_pred cEEEEEEEEEEeCC-eEEEEe------eEEEEcCCCEE---EEECCCCCCHHHHHHHHHCCCCCCc
Confidence 47899999999987 456777 99999999999 9999999999999999999999874
No 73
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.72 E-value=2.1e-17 Score=107.85 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=48.6
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|+. ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 1 i~~~~l~~~~~~-~~~l~~------is~~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (213)
T cd03301 1 VELENVTKRFGN-VTALDD------LNLDIADGEFV---VLLGPSGCGKTTTLRMIAGLEEPTS 54 (213)
T ss_pred CEEEeeEEEECC-eeeeec------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 468999999986 456777 99999999999 9999999999999999999998863
No 74
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.72 E-value=2.8e-17 Score=113.36 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=50.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 2 ~l~~~~l~~~~~~-~~~l~~------is~~i~~Gei~---~l~G~NGaGKTTLl~~l~Gl~~~~~ 56 (301)
T TIGR03522 2 SIRVSSLTKLYGT-QNALDE------VSFEAQKGRIV---GFLGPNGAGKSTTMKIITGYLPPDS 56 (301)
T ss_pred EEEEEEEEEEECC-EEEEEE------eEEEEeCCeEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 5899999999986 557777 99999999999 9999999999999999999999874
No 75
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.72 E-value=2.8e-17 Score=109.24 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=49.8
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+..|++
T Consensus 1 ~l~~~~l~~~~~~-~~il~~------~s~~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~~~~ 55 (240)
T PRK09493 1 MIEFKNVSKHFGP-TQVLHN------IDLNIDQGEVV---VIIGPSGSGKSTLLRCINKLEEITS 55 (240)
T ss_pred CEEEEeEEEEECC-eEEeee------eeEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 4789999999986 457777 99999999999 9999999999999999999998864
No 76
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.72 E-value=3e-17 Score=110.75 Aligned_cols=55 Identities=35% Similarity=0.367 Sum_probs=50.3
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|++ ..++++ +||++++|+++ +|+|+||||||||+++|+|+..|++
T Consensus 2 ~l~~~~l~~~~~~-~~il~~------is~~i~~Ge~~---~i~G~nGsGKSTLl~~i~G~~~p~~ 56 (258)
T PRK13548 2 MLEARNLSVRLGG-RTLLDD------VSLTLRPGEVV---AILGPNGAGKSTLLRALSGELSPDS 56 (258)
T ss_pred eEEEEeEEEEeCC-eeeeee------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 6899999999986 457777 99999999999 9999999999999999999998863
No 77
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.9e-17 Score=116.19 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=51.1
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+|+++++++.|++ ..++++ +||++++||++ +|+|||||||||||++|+|++.|++
T Consensus 5 ~~l~~~~l~~~~~~-~~~l~~------isl~i~~Ge~~---~llGpsGsGKSTLLr~IaGl~~p~~ 60 (351)
T PRK11432 5 NFVVLKNITKRFGS-NTVIDN------LNLTIKQGTMV---TLLGPSGCGKTTVLRLVAGLEKPTE 60 (351)
T ss_pred cEEEEEeEEEEECC-eEEEee------eEEEEcCCCEE---EEECCCCCcHHHHHHHHHCCCCCCc
Confidence 47899999999986 456666 99999999999 9999999999999999999999974
No 78
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2.2e-17 Score=109.24 Aligned_cols=55 Identities=31% Similarity=0.316 Sum_probs=48.5
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++...++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 l~~~~l~~~~~~~~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 55 (241)
T cd03256 1 IEVENLSKTYPNGKKALKD------VSLSINPGEFV---ALIGPSGAGKSTLLRCLNGLVEPTS 55 (241)
T ss_pred CEEeeEEEecCCccEEEec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhCCcCCCC
Confidence 4689999999752356777 99999999999 9999999999999999999998863
No 79
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=2.2e-17 Score=113.68 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=52.6
Q ss_pred cceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 2 EAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++.+++++++++|++ +.++++ ++|+|++||++ +|+||||||||||||+|.|+++|++
T Consensus 6 ~~~I~vr~v~~~fG~-~~Ild~------v~l~V~~Gei~---~iiGgSGsGKStlLr~I~Gll~P~~ 62 (263)
T COG1127 6 EPLIEVRGVTKSFGD-RVILDG------VDLDVPRGEIL---AILGGSGSGKSTLLRLILGLLRPDK 62 (263)
T ss_pred cceEEEeeeeeecCC-EEEecC------ceeeecCCcEE---EEECCCCcCHHHHHHHHhccCCCCC
Confidence 358999999999998 567766 99999999999 9999999999999999999999985
No 80
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.72 E-value=2.1e-17 Score=109.28 Aligned_cols=54 Identities=28% Similarity=0.295 Sum_probs=48.5
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~------vsl~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~~~~ 54 (236)
T cd03219 1 LEVRGLTKRFGG-LVALDD------VSFSVRPGEIH---GLIGPNGAGKTTLFNLISGFLRPTS 54 (236)
T ss_pred CeeeeeEEEECC-EEEecC------ceEEecCCcEE---EEECCCCCCHHHHHHHHcCCCCCCC
Confidence 468999999986 457777 99999999999 9999999999999999999998864
No 81
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.72 E-value=2.7e-17 Score=107.17 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=48.8
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ ..++++ ++|++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~------~~~~i~~G~~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 54 (208)
T cd03268 1 LKTNDLTKTYGK-KRVLDD------ISLHVKKGEIY---GFLGPNGAGKTTTMKIILGLIKPDS 54 (208)
T ss_pred CEEEEEEEEECC-eEeEee------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhCCcCCCc
Confidence 478999999976 467777 99999999999 9999999999999999999998864
No 82
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.72 E-value=2.7e-17 Score=116.24 Aligned_cols=56 Identities=21% Similarity=0.263 Sum_probs=49.9
Q ss_pred eEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
||++++++++|++. ..++++ +||++++||++ +|+||||||||||+++|+|+++|++
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~------vsl~i~~Gei~---gIiG~sGaGKSTLlr~I~gl~~p~~ 59 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNN------VSLHVPAGQIY---GVIGASGAGKSTLIRCVNLLERPTS 59 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCc
Confidence 58999999999631 356777 99999999999 9999999999999999999999974
No 83
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3.4e-17 Score=109.39 Aligned_cols=55 Identities=24% Similarity=0.168 Sum_probs=50.6
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
|..++++++++++|+. ..++++ +||++++||++ +|+|+||||||||+++|+|+..
T Consensus 1 ~~~~l~~~~l~~~~~~-~~~l~~------~sl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 1 MENIISAKDVHLSYGN-YEALHG------ISLDFEEKELT---ALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCceEEEEeeEEEECC-eeeeee------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhhccc
Confidence 6678999999999986 467777 99999999999 9999999999999999999986
No 84
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=2.9e-17 Score=116.28 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=50.4
Q ss_pred ceEEEeceeEEc-cCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSM-RQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~-~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.| ++ ..++++ +||++++||++ +|+|||||||||||++|+|+++|++
T Consensus 2 ~~l~i~~l~~~~~~~-~~~l~~------vsl~i~~Ge~~---~llG~sGsGKSTLLr~iaGl~~p~~ 58 (356)
T PRK11650 2 AGLKLQAVRKSYDGK-TQVIKG------IDLDVADGEFI---VLVGPSGCGKSTLLRMVAGLERITS 58 (356)
T ss_pred CEEEEEeEEEEeCCC-CEEEee------eeEEEcCCCEE---EEECCCCCcHHHHHHHHHCCCCCCc
Confidence 378999999999 55 456666 99999999999 9999999999999999999999874
No 85
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.71 E-value=2.8e-17 Score=111.63 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=50.7
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+|+++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 11 ~~l~i~~l~~~~~~-~~il~~------isl~i~~Ge~~---~I~G~NGsGKSTLlk~l~Gl~~p~~ 66 (257)
T PRK11247 11 TPLLLNAVSKRYGE-RTVLNQ------LDLHIPAGQFV---AVVGRSGCGKSTLLRLLAGLETPSA 66 (257)
T ss_pred CcEEEEEEEEEECC-cceeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 36899999999986 457777 99999999999 9999999999999999999998864
No 86
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=3.2e-17 Score=107.83 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=50.7
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+.+|++
T Consensus 10 ~~l~~~~l~~~~~~-~~il~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~i~G~~~~~~ 65 (214)
T PRK13543 10 PLLAAHALAFSRNE-EPVFGP------LDFHVDAGEAL---LVQGDNGAGKTTLLRVLAGLLHVES 65 (214)
T ss_pred ceEEEeeEEEecCC-ceeeec------ceEEECCCCEE---EEEcCCCCCHHHHHHHHhCCCCCCC
Confidence 47899999999986 356777 99999999999 9999999999999999999998864
No 87
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.71 E-value=2.7e-17 Score=111.49 Aligned_cols=58 Identities=28% Similarity=0.355 Sum_probs=50.9
Q ss_pred cceEEEeceeEEccC--------ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 2 EAIEELSQLSDSMRQ--------AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~--------~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
..+|++++++++|+. ...++++ +||++++|+++ +|+||||||||||+++|+|+++|++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~------vsl~i~~Ge~~---~i~G~NGsGKSTLl~~l~Gl~~p~~ 67 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKP------LSFTLREGQTL---AIIGENGSGKSTLAKMLAGMIEPTS 67 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeee------eeEEecCCCEE---EEEcCCCCCHHHHHHHHhCCCCCCC
Confidence 458999999999963 1246766 99999999999 9999999999999999999999864
No 88
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=3e-17 Score=107.93 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=48.6
Q ss_pred EEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++. ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~------vs~~i~~G~~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 58 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALED------ISLSVEEGEFV---ALVGPSGCGKSTLLRIIAGLERPTS 58 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEec------eeEEEeCCcEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 4689999999752 357777 99999999999 9999999999999999999998863
No 89
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.71 E-value=1.8e-17 Score=108.03 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=47.4
Q ss_pred EEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 6 ELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 6 ~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++.|++...++++ ++|++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~------v~~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 54 (205)
T cd03226 1 RIENISFSYKKGTEILDD------LSLDLYAGEII---ALTGKNGAGKTTLAKILAGLIKESS 54 (205)
T ss_pred CcccEEEEeCCcCceeee------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCc
Confidence 368999999752346777 99999999999 9999999999999999999998864
No 90
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3.2e-17 Score=109.68 Aligned_cols=56 Identities=23% Similarity=0.179 Sum_probs=51.2
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
|..+++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+..|
T Consensus 1 ~~~~l~~~~l~~~~~~-~~~l~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~ 56 (251)
T PRK14270 1 MKIKMESKNLNLWYGE-KQALND------INLPIYENKIT---ALIGPSGCGKSTFLRCLNRMNDL 56 (251)
T ss_pred CccEEEEEEeEEEECC-eeeeec------eeEEEcCCCEE---EEECCCCCCHHHHHHHHHhccCc
Confidence 6789999999999986 457777 99999999999 99999999999999999999865
No 91
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.71 E-value=2.3e-17 Score=119.13 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=50.3
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+|++++++++|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 3 ~l~~~~l~~~~~~-~~il~~------vsl~i~~Ge~~---~liG~nGsGKSTLl~~l~G~~~p~~ 57 (490)
T PRK10938 3 SLQISQGTFRLSD-TKTLQL------PSLTLNAGDSW---AFVGANGSGKSALARALAGELPLLS 57 (490)
T ss_pred eEEEEeEEEEcCC-eeeccc------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhccCCCCC
Confidence 7999999999986 346766 99999999999 9999999999999999999998864
No 92
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.71 E-value=3.1e-17 Score=109.55 Aligned_cols=54 Identities=24% Similarity=0.248 Sum_probs=49.1
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+..|+
T Consensus 1 ~l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~p~ 54 (247)
T TIGR00972 1 AIEIENLNLFYGE-KEALKN------INLDIPKNQVT---ALIGPSGCGKSTLLRSLNRMNDLV 54 (247)
T ss_pred CEEEEEEEEEECC-eeeecc------eeEEECCCCEE---EEECCCCCCHHHHHHHHhccCCCC
Confidence 4789999999986 456766 99999999999 999999999999999999999875
No 93
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.71 E-value=2.6e-17 Score=121.02 Aligned_cols=57 Identities=26% Similarity=0.261 Sum_probs=51.2
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|+....++++ +||++++|+++ +|+|||||||||||++|+|++.|++
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~------vs~~i~~Ge~~---~iiG~NGsGKSTLlk~i~G~~~p~~ 61 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKD------ISLSFFPGAKI---GVLGLNGAGKSTLLRIMAGVDKEFE 61 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeC------ceEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 489999999999822557777 99999999999 9999999999999999999998863
No 94
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.71 E-value=3.4e-17 Score=110.02 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=50.2
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
|+.+++++++++.| + ..++++ +||++++||++ +|+|+||||||||+++|+|+..|
T Consensus 1 ~~~~l~~~~l~~~~-~-~~il~~------vsl~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 1 MPQQIELRNIALQA-A-QPLVHG------VSLTLQRGRVL---ALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred CCcEEEEeCeEEEe-c-cceecc------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCC
Confidence 67789999999999 3 356766 99999999999 99999999999999999999988
No 95
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.71 E-value=3.7e-17 Score=107.57 Aligned_cols=56 Identities=27% Similarity=0.315 Sum_probs=49.3
Q ss_pred eEEEeceeEEccC------ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQ------AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~------~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|+. ...++++ +||++++||++ +|+|+||||||||+++|+|+++|++
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~------vs~~i~~Ge~~---~l~G~nGsGKSTLl~~i~G~~~~~~ 62 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKN------VSLTVNAGECV---ALSGPSGAGKSTLLKSLYANYLPDS 62 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEec------ceEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4789999999963 1356777 99999999999 9999999999999999999998863
No 96
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.71 E-value=3.6e-17 Score=119.19 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=52.2
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|.++++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 8 ~~~~l~~~~l~~~~~~-~~il~~------vsl~i~~Ge~~---~liG~NGsGKSTLl~~l~Gl~~p~~ 65 (510)
T PRK15439 8 APPLLCARSISKQYSG-VEVLKG------IDFTLHAGEVH---ALLGGNGAGKSTLMKIIAGIVPPDS 65 (510)
T ss_pred CCceEEEEeEEEEeCC-ceeeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 4568999999999986 457777 99999999999 9999999999999999999998864
No 97
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.71 E-value=2.1e-17 Score=108.03 Aligned_cols=53 Identities=28% Similarity=0.372 Sum_probs=47.6
Q ss_pred EEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 6 ELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 6 ~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ~~~~l~~~~~~-~~~l~~------isl~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~p~~ 53 (213)
T cd03235 1 EVEDLTVSYGG-HPVLED------VSFEVKPGEFL---AIVGPNGAGKSTLLKAILGLLKPTS 53 (213)
T ss_pred CcccceeEECC-EEeeec------ceeEEcCCCEE---EEECCCCCCHHHHHHHHcCCCCCCC
Confidence 36899999986 457777 99999999999 9999999999999999999998864
No 98
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.71 E-value=4.1e-17 Score=105.99 Aligned_cols=54 Identities=22% Similarity=0.171 Sum_probs=48.7
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|+. ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (198)
T TIGR01189 1 LAARNLACSRGE-RMLFEG------LSFTLNAGEAL---QVTGPNGIGKTTLLRILAGLLRPDS 54 (198)
T ss_pred CEEEEEEEEECC-EEEEee------eeEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 478999999986 457777 99999999999 9999999999999999999998863
No 99
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.5e-17 Score=115.55 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=50.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..++++ +||++++|+++ +|+|||||||||||++|+|+++|++
T Consensus 2 ~~l~i~~l~~~~~~-~~vl~~------vsl~i~~Ge~~---~l~G~nGsGKSTLL~~iaGl~~p~~ 57 (369)
T PRK11000 2 ASVTLRNVTKAYGD-VVISKD------INLDIHEGEFV---VFVGPSGCGKSTLLRMIAGLEDITS 57 (369)
T ss_pred CEEEEEEEEEEeCC-eEEEee------eEEEEcCCCEE---EEECCCCCcHHHHHHHHhCCCCCCc
Confidence 36899999999986 456777 99999999999 9999999999999999999999874
No 100
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.5e-17 Score=110.98 Aligned_cols=59 Identities=22% Similarity=0.183 Sum_probs=52.6
Q ss_pred CcceEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|..++++++++++|+.. ..++++ ++|++++||++ +|+|+||||||||+++|+|+..|++
T Consensus 1 m~~~l~~~~l~~~~~~~~~~~~l~~------v~l~i~~Ge~~---~I~G~nGsGKSTLl~~l~Gl~~~~~ 61 (277)
T PRK13642 1 MNKILEVENLVFKYEKESDVNQLNG------VSFSITKGEWV---SIIGQNGSGKSTTARLIDGLFEEFE 61 (277)
T ss_pred CCceEEEEEEEEEcCCCCcCeeeee------eEEEEcCCCEE---EEECCCCCcHHHHHHHHhcCCCCCC
Confidence 77789999999999742 246777 99999999999 9999999999999999999998864
No 101
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.71 E-value=3.9e-17 Score=104.36 Aligned_cols=55 Identities=29% Similarity=0.306 Sum_probs=48.7
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++...++++ ++|++++||++ +|+|+||||||||+++|+|+.+|++
T Consensus 1 i~~~~~~~~~~~~~~~l~~------i~l~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 55 (166)
T cd03223 1 IELENLSLATPDGRVLLKD------LSFEIKPGDRL---LITGPSGTGKSSLFRALAGLWPWGS 55 (166)
T ss_pred CEEEEEEEEcCCCCeeeec------CeEEECCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4689999999643457777 99999999999 9999999999999999999998863
No 102
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.1e-17 Score=111.77 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=50.0
Q ss_pred eEEEeceeEEccCc----eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA----AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~----~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|+.. ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~------vsl~i~~Ge~~---~iiG~NGaGKSTLl~~l~Gl~~p~~ 61 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDN------ISFELEEGSFV---ALVGHTGSGKSTLMQHFNALLKPSS 61 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceee------eEEEEeCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 68999999999742 246777 99999999999 9999999999999999999999874
No 103
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.71 E-value=4.5e-17 Score=110.13 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=49.8
Q ss_pred eEEEeceeEEccC--------ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQ--------AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~--------~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|+. ...++++ +||++++||++ +|+|+||||||||+++|+|+..|++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 65 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTN------VSLSIEEGETV---GLLGRSGCGKSTLARLLLGLEKPAQ 65 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeC------ceeEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 6899999999963 2456766 99999999999 9999999999999999999998864
No 104
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.6e-17 Score=109.04 Aligned_cols=55 Identities=24% Similarity=0.209 Sum_probs=49.6
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
|.++++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..
T Consensus 3 ~~~~i~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14261 3 MEIILSTKNLNLWYGE-KHALYD------ITISIPKNRVT---ALIGPSGCGKSTLLRCFNRMND 57 (253)
T ss_pred ccceEEEeeeEEEECC-eeeeee------eEEEECCCcEE---EEECCCCCCHHHHHHHHhcccc
Confidence 3568999999999986 457777 99999999999 9999999999999999999875
No 105
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=3.6e-17 Score=107.72 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=49.4
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++.|+....++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~------isl~i~~G~~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 57 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKD------INFSIKPGETV---AIVGPTGAGKTTLINLLMRFYDPQK 57 (229)
T ss_pred eEEEEEEEEecCCCCccccc------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCcCCCC
Confidence 36899999999753346666 99999999999 9999999999999999999998863
No 106
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.1e-17 Score=111.09 Aligned_cols=56 Identities=25% Similarity=0.239 Sum_probs=49.7
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|+....++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~------vsl~i~~Ge~~---~l~G~nGsGKSTLl~~i~Gl~~~~~ 56 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKG------INFKAEKGEMV---ALLGPNGAGKSTLFLHFNGILKPTS 56 (275)
T ss_pred CEEEEEEEEEeCCCCeeeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 47899999999743457777 99999999999 9999999999999999999998863
No 107
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.2e-17 Score=114.61 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=50.0
Q ss_pred eEEEeceeEEcc--C-ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMR--Q-AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~--~-~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+++++++++|+ . ...++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~------vsl~i~~Gei~---~iiG~nGsGKSTLlk~L~Gl~~p~~ 59 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNN------VSLHIPAGEIF---GVIGASGAGKSTLIRCINLLERPTS 59 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEe------eEEEEcCCCEE---EEECCCCCcHHHHHHHHhCCCCCCc
Confidence 588999999997 2 2457777 99999999999 9999999999999999999999864
No 108
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.5e-17 Score=111.34 Aligned_cols=57 Identities=25% Similarity=0.218 Sum_probs=50.9
Q ss_pred ceEEEeceeEEccC-ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQ-AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~-~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ...++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~------vsl~i~~Ge~~---~i~G~nGaGKSTLl~~i~G~~~p~~ 61 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKD------VSFSVYEGEWV---AIVGHNGSGKSTLAKLLNGLLLPEA 61 (279)
T ss_pred ceEEEEEEEEEeCCCCccceee------eEEEEcCCCEE---EEECCCCCcHHHHHHHHhcCCCCCC
Confidence 47999999999974 2347777 99999999999 9999999999999999999999864
No 109
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=5.2e-17 Score=109.83 Aligned_cols=56 Identities=23% Similarity=0.171 Sum_probs=50.7
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..++++ +||++++|+++ +|+|+||||||||+++|+|+.+|++
T Consensus 10 ~~l~i~~l~~~~~~-~~il~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 65 (265)
T PRK10575 10 TTFALRNVSFRVPG-RTLLHP------LSLTFPAGKVT---GLIGHNGSGKSTLLKMLGRHQPPSE 65 (265)
T ss_pred ceEEEeeEEEEECC-EEEEee------eeeEEcCCCEE---EEECCCCCCHHHHHHHHcCCCCCCC
Confidence 37899999999976 467777 99999999999 9999999999999999999998863
No 110
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=5e-17 Score=108.83 Aligned_cols=55 Identities=27% Similarity=0.273 Sum_probs=50.6
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
|...++++++++.|+. ..++++ +||++++||++ +|+|+||||||||+++|+|+..
T Consensus 1 ~~~~l~~~nl~~~~~~-~~~l~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 1 MNNKVKLEQLNVHFGK-NHAVKD------VSMDFPENSVT---AIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred CCcEEEEEEEEEEeCC-eeEEec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHHhccc
Confidence 6778999999999986 457777 99999999999 9999999999999999999975
No 111
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.71 E-value=4.6e-17 Score=117.26 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=51.5
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|++ ..++++ +||++++||++ +|+||||||||||||+|+|++.|++
T Consensus 2 ~~L~~~nls~~y~~-~~vL~~------vs~~i~~Geiv---~liGpNGaGKSTLLk~LaGll~p~s 57 (402)
T PRK09536 2 PMIDVSDLSVEFGD-TTVLDG------VDLSVREGSLV---GLVGPNGAGKTTLLRAINGTLTPTA 57 (402)
T ss_pred ceEEEeeEEEEECC-EEEEEe------eEEEECCCCEE---EEECCCCchHHHHHHHHhcCCCCCC
Confidence 57999999999987 567777 99999999999 9999999999999999999999864
No 112
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.71 E-value=5.4e-17 Score=114.83 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=50.4
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+|+++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+++|++
T Consensus 2 ~L~i~~l~~~~~~-~~~l~~------isl~i~~Ge~~---~llGpsGsGKSTLLr~IaGl~~p~~ 56 (353)
T PRK10851 2 SIEIANIKKSFGR-TQVLND------ISLDIPSGQMV---ALLGPSGSGKTTLLRIIAGLEHQTS 56 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEE------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 5899999999987 457777 99999999999 9999999999999999999999874
No 113
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=5.4e-17 Score=115.78 Aligned_cols=57 Identities=26% Similarity=0.384 Sum_probs=51.4
Q ss_pred cceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 2 EAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
..+++++++++.|++ ..++++ ++|++++||++ +|+|||||||||||++|+|++.|++
T Consensus 17 ~~~l~l~~v~~~~~~-~~~l~~------vsl~i~~Ge~~---~llGpsGsGKSTLLr~IaGl~~p~~ 73 (377)
T PRK11607 17 TPLLEIRNLTKSFDG-QHAVDD------VSLTIYKGEIF---ALLGASGCGKSTLLRMLAGFEQPTA 73 (377)
T ss_pred CceEEEEeEEEEECC-EEEEee------eEEEEcCCCEE---EEECCCCCcHHHHHHHHhCCCCCCc
Confidence 457999999999986 456766 99999999999 9999999999999999999999874
No 114
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=5.2e-17 Score=104.31 Aligned_cols=54 Identities=30% Similarity=0.343 Sum_probs=48.6
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|+. ..++++ ++|++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 i~~~~l~~~~~~-~~~l~~------i~~~i~~G~~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (178)
T cd03229 1 LELKNVSKRYGQ-KTVLND------VSLNIEAGEIV---ALLGPSGSGKSTLLRCIAGLEEPDS 54 (178)
T ss_pred CEEEEEEEEECC-eEEEee------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 468999999976 457777 99999999999 9999999999999999999998863
No 115
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.70 E-value=3.6e-17 Score=107.80 Aligned_cols=53 Identities=25% Similarity=0.192 Sum_probs=47.9
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC-----CCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP-----VLV 67 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~-----~~~ 67 (68)
++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+. .|+
T Consensus 1 i~~~~l~~~~~~-~~~l~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~i~G~~~~~~~~~~ 58 (227)
T cd03260 1 IELRDLNVYYGD-KHALKD------ISLDIPKGEIT---ALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58 (227)
T ss_pred CEEEEEEEEcCC-ceeeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHHhhcccccCCCC
Confidence 478999999986 457777 99999999999 999999999999999999998 775
No 116
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.70 E-value=4.2e-17 Score=106.17 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=49.1
Q ss_pred EEEeceeEEccCc----eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQA----AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~----~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|+++ ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~------~s~~i~~G~~~---~i~G~nG~GKSTLl~~i~G~~~~~~ 59 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKD------INLEVPKGELV---AIVGPVGSGKSSLLSALLGELEKLS 59 (204)
T ss_pred CEEeEEEEecCCCCccccceeee------eeEEECCCCEE---EEECCCCCCHHHHHHHHhCcCCCCC
Confidence 4789999999764 257777 99999999999 9999999999999999999998874
No 117
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.70 E-value=6.4e-17 Score=108.71 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=51.1
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..++++ ++|++++||++ +|+|+||||||||+++|+|+..|++
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~------is~~i~~Ge~~---~l~G~nGsGKSTLl~~i~G~~~~~~ 59 (257)
T PRK10619 4 NKLNVIDLHKRYGE-HEVLKG------VSLQANAGDVI---SIIGSSGSGKSTFLRCINFLEKPSE 59 (257)
T ss_pred ccEEEeeeEEEECC-EEEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 47899999999986 457777 99999999999 9999999999999999999998864
No 118
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.70 E-value=5.8e-17 Score=109.61 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=50.9
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+|+++++++.|++ ..++++ +||++.+|+++ +|+||||||||||+++|+|+..|++
T Consensus 6 ~~l~i~~l~~~~~~-~~~l~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~i~G~~~~~~ 61 (265)
T PRK10253 6 ARLRGEQLTLGYGK-YTVAEN------LTVEIPDGHFT---AIIGPNGCGKSTLLRTLSRLMTPAH 61 (265)
T ss_pred cEEEEEEEEEEECC-EEEeee------cceEECCCCEE---EEECCCCCCHHHHHHHHcCCCCCCC
Confidence 47899999999986 457777 99999999999 9999999999999999999998863
No 119
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.70 E-value=4.9e-17 Score=108.87 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=48.8
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 1 i~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (252)
T TIGR03005 1 VRFSDVTKRFGI-LTVLDG------LNFSVAAGEKV---ALIGPSGSGKSTILRILMTLEPIDE 54 (252)
T ss_pred CEEEEEEEEeCC-eeEEee------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 478999999986 457777 99999999999 9999999999999999999998863
No 120
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=4.7e-17 Score=118.22 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=50.2
Q ss_pred cceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 2 EAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+++++++|++++|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|
T Consensus 3 ~~~l~~~nl~~~~~~-~~il~~------isl~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 3 EYLLEMKNITKTFGG-VKALDN------VSLKVRAGEIV---SLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred CceEEEeeeEEEeCC-eEeecc------eeEEEeCCeEE---EEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999986 457766 99999999999 99999999999999999999986
No 121
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.70 E-value=3.9e-17 Score=106.47 Aligned_cols=54 Identities=31% Similarity=0.324 Sum_probs=47.3
Q ss_pred EEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 6 ELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 6 ~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++.|++. ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 ~~~~l~~~~~~~~~~il~~------vs~~i~~G~~~---~l~G~nGsGKSTLl~~l~G~~~~~~ 55 (211)
T cd03225 1 ELKNLSFSYPDGARPALDD------ISLTIKKGEFV---LIVGPNGSGKSTLLRLLNGLLGPTS 55 (211)
T ss_pred CceeEEEecCCCCeeeecc------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 468999999752 356666 99999999999 9999999999999999999998864
No 122
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.70 E-value=6.7e-17 Score=109.71 Aligned_cols=57 Identities=26% Similarity=0.341 Sum_probs=50.8
Q ss_pred ceEEEeceeEEccC--------ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQ--------AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~--------~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|+. ...++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~s 66 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNN------VSLSLKSGETV---ALLGRSGCGKSTLARLLVGLESPSQ 66 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEec------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 47899999999973 3457777 99999999999 9999999999999999999998864
No 123
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.70 E-value=5e-17 Score=111.15 Aligned_cols=54 Identities=30% Similarity=0.308 Sum_probs=49.4
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
|++++|+++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|++.|+
T Consensus 1 ml~~~nl~~~~~~-~~il~~------vsl~i~~Ge~~---~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 1 MLTADHLHVARRH-RAILRD------LSLRIEPGRVT---ALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred CeEEEEEEEEECC-EeEEec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCc
Confidence 4889999999976 467777 99999999999 999999999999999999999875
No 124
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=5.6e-17 Score=110.22 Aligned_cols=56 Identities=23% Similarity=0.260 Sum_probs=49.5
Q ss_pred eEEEeceeEEccCc----eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA----AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~----~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++.|+.. ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~------is~~i~~Ge~~---~l~G~nGsGKSTLl~~i~Gl~~p~~ 61 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFD------VNLTIEDGSYT---AFIGHTGSGKSTIMQLLNGLHVPTQ 61 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeee------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 48899999999742 246766 99999999999 9999999999999999999998864
No 125
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=5.3e-17 Score=108.81 Aligned_cols=55 Identities=27% Similarity=0.234 Sum_probs=49.9
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.+++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+..|+
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~~ 60 (254)
T PRK14273 6 AIIETENLNLFYTD-FKALNN------INIKILKNSIT---ALIGPSGCGKSTFLRTLNRMNDLV 60 (254)
T ss_pred ceEEEeeeEEEeCC-ceeecc------eeeEEcCCCEE---EEECCCCCCHHHHHHHHhccccCC
Confidence 47999999999986 456777 99999999999 999999999999999999999873
No 126
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.70 E-value=9.9e-18 Score=115.03 Aligned_cols=56 Identities=25% Similarity=0.296 Sum_probs=50.5
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++++|+. -..+ ++ +||++++||++ +||||||||||||+++|+|+++|++
T Consensus 3 ~lL~v~~l~k~FGG-l~Al--~~----Vsl~v~~Gei~---~LIGPNGAGKTTlfNlitG~~~P~~ 58 (250)
T COG0411 3 PLLEVRGLSKRFGG-LTAV--ND----VSLEVRPGEIV---GLIGPNGAGKTTLFNLITGFYKPSS 58 (250)
T ss_pred ceeeeccceeecCC-EEEE--ec----eeEEEcCCeEE---EEECCCCCCceeeeeeecccccCCC
Confidence 57899999999998 3444 44 99999999999 9999999999999999999999984
No 127
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=6.5e-17 Score=110.93 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=49.9
Q ss_pred eEEEeceeEEccCc----eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA----AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~----~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++.|+.. ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~------vs~~i~~Ge~~---~i~G~nGaGKSTLl~~l~Gl~~p~~ 61 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDN------VNIEIEDGEFV---GLIGHTGSGKSTLIQHLNGLLKPTS 61 (287)
T ss_pred EEEEEEEEEECCCCCccccceeee------eEEEEcCCCEE---EEECCCCCcHHHHHHHHhcCCCCCc
Confidence 58999999999742 246777 99999999999 9999999999999999999999864
No 128
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=5.7e-17 Score=107.99 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=48.5
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++...++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 l~~~~l~~~~~~~~~~l~~------is~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 55 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNN------LNLEIAKGEFL---VLIGPSGSGKTTTMKMINRLIEPTS 55 (242)
T ss_pred CEEEEEEEEeCCcceEeee------eEEEECCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4689999999862346767 99999999999 9999999999999999999998863
No 129
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=7.3e-17 Score=103.25 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=48.4
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++|+. ..++++ ++|++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~------~~~~i~~Ge~~---~i~G~nGsGKStLl~~l~G~~~~~~ 54 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDD------ISLTVEKGEIY---GLLGPNGAGKTTLIKIILGLLKPDS 54 (173)
T ss_pred CEEEEEEEEECC-eeeeee------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 468999999976 457777 99999999999 9999999999999999999998853
No 130
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.70 E-value=5.5e-17 Score=105.87 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=48.4
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ ..++++ +||++++|+++ +|+|+||||||||+++|+|+..|++
T Consensus 1 l~i~~l~~~~~~-~~~l~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (201)
T cd03231 1 LEADELTCERDG-RALFSG------LSFTLAAGEAL---QVTGPNGSGKTTLLRILAGLSPPLA 54 (201)
T ss_pred CEEEEEEEEeCC-ceeecc------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 478999999986 456666 99999999999 9999999999999999999998864
No 131
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=5.9e-17 Score=108.13 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=49.3
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..|
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~ 55 (249)
T PRK14253 2 NKFNIENLDLFYGE-NQALKS------INLPIPARQVT---ALIGPSGCGKSTLLRCLNRMNDL 55 (249)
T ss_pred CeEEEeccEEEECC-eeeeec------ceEEecCCCEE---EEECCCCCCHHHHHHHHHhhccc
Confidence 37899999999986 457777 99999999999 99999999999999999999876
No 132
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=6e-17 Score=112.46 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=49.8
Q ss_pred eEEEeceeEEccCce----EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAA----ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~----~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+|+++++++.|++.. .++++ +||++++||++ +|+||||||||||+++|+|+++|++
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~------vsl~i~~Ge~v---~iiG~nGsGKSTLl~~L~Gl~~p~~ 61 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDN------VSVEINQGEFI---AIIGQTGSGKTTFIEHLNALLLPDT 61 (305)
T ss_pred EEEEEEEEEEECCCCCccccceee------eEEEEeCCCEE---EEECCCCCcHHHHHHHHhCCCCCCC
Confidence 589999999997532 36766 99999999999 9999999999999999999999864
No 133
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=7e-17 Score=107.98 Aligned_cols=54 Identities=24% Similarity=0.137 Sum_probs=48.7
Q ss_pred cceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 2 EAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
++++++++++++|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..
T Consensus 4 ~~~l~~~~l~~~~~~-~~il~~------is~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 4 PPKMEARGLSFFYGD-FQALHD------ISLEFEQNQVT---ALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred CcEEEEeeeEEEECC-eeeecc------eeEEEeCCCEE---EEECCCCCCHHHHHHHHHhhcc
Confidence 458999999999986 457777 99999999999 9999999999999999999864
No 134
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=5.4e-17 Score=111.38 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=49.5
Q ss_pred eEEEeceeEEccCce----EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAA----ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~----~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|+... .++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~------vsl~i~~Ge~v---~i~G~nGsGKSTLl~~l~Gl~~p~~ 60 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFD------IDLEVKKGSYT---ALIGHTGSGKSTLLQHLNGLLQPTE 60 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceee------eEEEEcCCCEE---EEECCCCChHHHHHHHHhcCCCCCC
Confidence 588999999997421 36666 99999999999 9999999999999999999999864
No 135
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=7.1e-17 Score=107.80 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=48.9
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++++++++++.|++ ..++++ ++|++++||++ +|+|+||||||||+++|+|+..|
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~------i~~~i~~Ge~~---~i~G~nGsGKSTLl~~i~Gl~~~ 55 (250)
T PRK14262 2 PIIEIENFSAYYGE-KKAVKN------VTMKIFKNQIT---AIIGPSGCGKTTLLRSINRMNDH 55 (250)
T ss_pred ceEEEEeeEEEeCC-ceeEee------eeEeecCCCEE---EEECCCCCCHHHHHHHHhccccC
Confidence 47899999999986 456777 99999999999 99999999999999999999874
No 136
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=6.7e-17 Score=110.69 Aligned_cols=56 Identities=13% Similarity=0.263 Sum_probs=49.7
Q ss_pred eEEEeceeEEccCc----eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA----AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~----~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++|+.+ ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~L~Gl~~p~~ 61 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHD------VNTEFEQGKYY---AIVGQTGSGKSTLIQNINALLKPTT 61 (286)
T ss_pred EEEEEEEEEEECCCCccccCceee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 48899999999642 247777 99999999999 9999999999999999999999864
No 137
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=6.8e-17 Score=109.46 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=50.6
Q ss_pred ceEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|++. ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~------isl~i~~Ge~~---~I~G~nGsGKSTLl~~i~Gl~~~~~ 63 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKD------VSFNIPKGQWT---SIVGHNGSGKSTIAKLMIGIEKVKS 63 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCc
Confidence 478999999999753 346767 99999999999 9999999999999999999998864
No 138
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=7.2e-17 Score=107.77 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=49.1
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..|
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~------is~~i~~Ge~~---~i~G~nGsGKSTLl~~i~G~~~~ 55 (250)
T PRK14247 2 NKIEIRDLKVSFGQ-VEVLDG------VNLEIPDNTIT---ALMGPSGSGKSTLLRVFNRLIEL 55 (250)
T ss_pred ceEEEEeeEEEECC-eeeeec------ceeEEcCCCEE---EEECCCCCCHHHHHHHHhccCCC
Confidence 37899999999986 457777 99999999999 99999999999999999999874
No 139
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=7.1e-17 Score=109.60 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=50.6
Q ss_pred ceEEEeceeEEccC-ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQ-AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~-~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ...++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~------isl~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~p~~ 63 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKN------VSFEINEGEYV---AILGHNGSGKSTISKILTGLLKPQS 63 (271)
T ss_pred eEEEEEeEEEEcCCCCccceee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 47899999999963 3457777 99999999999 9999999999999999999998863
No 140
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.69 E-value=5.4e-17 Score=105.31 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=46.7
Q ss_pred EeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 7 LSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 7 ~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 1 i~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 52 (206)
T TIGR03608 1 LKNISKKFGD-KIILDD------LNLTIEKGKMY---AIIGESGSGKSTLLNIIGLLEKFDS 52 (206)
T ss_pred CcceEEEECC-EEEEec------eEEEEeCCcEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4789999986 457777 99999999999 9999999999999999999998863
No 141
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.69 E-value=6.2e-17 Score=107.24 Aligned_cols=53 Identities=21% Similarity=0.428 Sum_probs=47.2
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC--CCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP--VLV 67 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~--~~~ 67 (68)
|+++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+. .|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~~~~ 55 (243)
T TIGR01978 1 LKIKDLHVSVED-KEILKG------VNLTVKKGEIH---AIMGPNGSGKSTLSKTIAGHPSYEVT 55 (243)
T ss_pred CeEeeEEEEECC-EEEEec------cceEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 478999999986 457777 99999999999 999999999999999999995 554
No 142
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.69 E-value=7.5e-17 Score=103.45 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=48.6
Q ss_pred EEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|+.. ..++++ ++|++++||++ +|+||||||||||+++|+|+..|++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~------i~~~i~~Ge~~---~i~G~nGsGKStLl~~l~G~~~~~~ 56 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKN------LSLELKQGEKI---ALLGRSGSGKSTLLQLLTGDLKPQQ 56 (178)
T ss_pred CEEEEEEEEeCCCCccceEE------EEEEEcCCCEE---EEECCCCCCHHHHHHHHhccCCCCC
Confidence 4789999999763 247777 99999999999 9999999999999999999998863
No 143
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=7.8e-17 Score=108.37 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=48.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+++++++++.|++ ..++++ ++|++++||++ +|+|+||||||||+++|+|+..
T Consensus 11 ~~l~i~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 11 EVYQINGMNLWYGQ-HHALKN------INLSIPENEVT---AIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred ceEEEeeEEEEECC-eeeEEe------eEEEEcCCCEE---EEECCCCCCHHHHHHHHHhhcc
Confidence 47899999999986 457777 99999999999 9999999999999999999986
No 144
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=6.6e-17 Score=109.32 Aligned_cols=55 Identities=25% Similarity=0.300 Sum_probs=50.6
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++++++++++|++ ..++++ +||++.+||++ +|+|+||||||||+++|+|+..|+
T Consensus 9 ~~i~~~~~~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~iaG~~~~~ 63 (257)
T PRK14246 9 DVFNISRLYLYIND-KAILKD------ITIKIPNNSIF---GIMGPSGSGKSTLLKVLNRLIEIY 63 (257)
T ss_pred hheeeeeEEEecCC-ceeEec------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCC
Confidence 57999999999987 456777 99999999999 999999999999999999999886
No 145
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=5.7e-17 Score=121.30 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=50.3
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
||+++|+++.|+. ..++++ +||+|.+|+++ +|+|||||||||||++|+|++.|++
T Consensus 1 ~i~i~nls~~~g~-~~~l~~------vs~~i~~Ge~v---~LvG~NGsGKSTLLkiL~G~~~pd~ 55 (638)
T PRK10636 1 MIVFSSLQIRRGV-RVLLDN------ATATINPGQKV---GLVGKNGCGKSTLLALLKNEISADG 55 (638)
T ss_pred CEEEEEEEEEeCC-ceeecC------cEEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 5789999999987 457776 99999999999 9999999999999999999998874
No 146
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=8.6e-17 Score=110.01 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=50.4
Q ss_pred ceEEEeceeEEccCce----EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAA----ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~----~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
..++++++++.|+++. .++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~------is~~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~p~~ 65 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNN------TSLTFKKNKVT---CVIGTTGSGKSTMIQLTNGLIISET 65 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeee------eEEEEeCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3688999999997532 36777 99999999999 9999999999999999999998864
No 147
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=7.8e-17 Score=105.21 Aligned_cols=53 Identities=23% Similarity=0.237 Sum_probs=47.5
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ ..++++ +||++++| ++ +|+||||||||||+++|+|+.+|++
T Consensus 1 i~~~~~~~~~~~-~~~l~~------vs~~i~~g-~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 53 (211)
T cd03264 1 LQLENLTKRYGK-KRALDG------VSLTLGPG-MY---GLLGPNGAGKTTLMRILATLTPPSS 53 (211)
T ss_pred CEEEEEEEEECC-EEEEcc------eeEEEcCC-cE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 478999999976 457777 99999999 98 9999999999999999999998864
No 148
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1e-16 Score=108.62 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=49.3
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.++++++++++|++ ..++++ +||++.+||++ +|+|+||||||||+++|+|+..|
T Consensus 19 ~~l~~~nl~~~~~~-~~il~~------vsl~i~~Ge~~---~I~G~nGsGKSTLl~~l~Gl~~~ 72 (267)
T PRK14237 19 IALSTKDLHVYYGK-KEAIKG------IDMQFEKNKIT---ALIGPSGSGKSTYLRSLNRMNDT 72 (267)
T ss_pred eEEEEeeEEEEECC-eeeEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHHhccCc
Confidence 47899999999976 567777 99999999999 99999999999999999999864
No 149
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.1e-16 Score=108.48 Aligned_cols=54 Identities=19% Similarity=0.105 Sum_probs=49.5
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.+|+++++++.|++ ..++++ +||++++|+++ +|+|+||||||||+++|+|+..|
T Consensus 18 ~~l~~~nl~~~~~~-~~il~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~ 71 (267)
T PRK14235 18 IKMRARDVSVFYGE-KQALFD------VDLDIPEKTVT---AFIGPSGCGKSTFLRCLNRMNDT 71 (267)
T ss_pred ceEEEEeEEEEECC-EEEEEE------EEEEEcCCCEE---EEECCCCCCHHHHHHHHHhhccc
Confidence 47899999999986 567777 99999999999 99999999999999999999875
No 150
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.69 E-value=9.1e-17 Score=105.80 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=50.5
Q ss_pred ceEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++. ..++++ ++|++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~------is~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 68 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQD------VSFTLHPGEVT---ALVGPSGSGKSTVVALLENFYQPQG 68 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccc------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCcCCCC
Confidence 478999999999752 246666 99999999999 9999999999999999999998864
No 151
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=7.8e-17 Score=106.54 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=48.5
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++...++++ ++|++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 l~~~~l~~~~~~~~~~l~~------i~~~i~~Ge~~---~l~G~nGsGKSTLl~~i~Gl~~~~~ 55 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKD------VSFTIPAGKKV---AIVGPSGSGKSTILRLLFRFYDVSS 55 (236)
T ss_pred CEEEEEEEEeCCCCceeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcccCCCC
Confidence 4689999999643456777 99999999999 9999999999999999999998864
No 152
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.2e-16 Score=108.45 Aligned_cols=53 Identities=25% Similarity=0.218 Sum_probs=48.5
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..
T Consensus 12 ~~l~i~nl~~~~~~-~~il~~------is~~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 12 IIISLQNVTISYGT-FEAVKN------VFCDIPRGKVT---ALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred ceEEEEeEEEEECC-EEEEcc------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcccc
Confidence 37999999999986 456766 99999999999 9999999999999999999976
No 153
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.69 E-value=1.1e-16 Score=105.35 Aligned_cols=54 Identities=28% Similarity=0.326 Sum_probs=48.7
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|+. ..++++ ++|++++||++ +|+||||||||||+++|+|+..|++
T Consensus 1 l~l~~v~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (223)
T TIGR03740 1 LETKNLSKRFGK-QTAVNN------ISLTVPKNSVY---GLLGPNGAGKSTLLKMITGILRPTS 54 (223)
T ss_pred CEEEeEEEEECC-EEEEee------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 468999999986 567777 99999999999 9999999999999999999998864
No 154
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=9.2e-17 Score=102.62 Aligned_cols=55 Identities=25% Similarity=0.259 Sum_probs=48.4
Q ss_pred EEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++. ..++++ ++|++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~------i~~~i~~G~~~---~l~G~nGsGKstLl~~i~G~~~~~~ 56 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKD------VSLTIKPGEKV---AIVGPSGSGKSTLLKLLLRLYDPTS 56 (171)
T ss_pred CEEEEEEEEcCCCCcccccc------eEEEEcCCCEE---EEECCCCCCHHHHHHHHHcCCCCCC
Confidence 4689999999764 246666 99999999999 9999999999999999999998863
No 155
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.69 E-value=9.9e-17 Score=105.12 Aligned_cols=55 Identities=29% Similarity=0.320 Sum_probs=48.9
Q ss_pred EEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++. ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~------i~~~i~~G~~~---~i~G~nGsGKSTLl~~i~G~~~~~~ 58 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDN------VSLTIRAGEKV---AIIGRVGSGKSTLLKLLAGLYKPTS 58 (220)
T ss_pred EEEEEEEEEcCCCCcccccc------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCcCCCC
Confidence 6899999999753 346766 99999999999 9999999999999999999998863
No 156
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.68 E-value=9.6e-17 Score=119.76 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=51.2
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+|+++++++.|++ ..++++ +||++.+|+++ +|+|||||||||||++|+|+..|++
T Consensus 2 ~~l~i~~ls~~~~~-~~il~~------is~~i~~Ge~v---~LvG~NGsGKSTLLriiaG~~~p~~ 57 (635)
T PRK11147 2 SLISIHGAWLSFSD-APLLDN------AELHIEDNERV---CLVGRNGAGKSTLMKILNGEVLLDD 57 (635)
T ss_pred cEEEEeeEEEEeCC-ceeEeC------cEEEECCCCEE---EEECCCCCCHHHHHHHHcCCCCCCC
Confidence 37999999999987 457777 99999999999 9999999999999999999999874
No 157
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.68 E-value=1.3e-16 Score=107.20 Aligned_cols=54 Identities=26% Similarity=0.203 Sum_probs=49.2
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+++|++
T Consensus 2 l~~~~l~~~~~~-~~il~~------is~~i~~Ge~~---~i~G~nGsGKSTLl~~i~G~~~~~~ 55 (256)
T TIGR03873 2 LRLSRVSWSAGG-RLIVDG------VDVTAPPGSLT---GLLGPNGSGKSTLLRLLAGALRPDA 55 (256)
T ss_pred ceEEeEEEEECC-EEEEee------eeEEEcCCcEE---EEECCCCCCHHHHHHHHcCCCCCCC
Confidence 578999999986 567777 99999999999 9999999999999999999998863
No 158
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.68 E-value=1.2e-16 Score=113.49 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=50.1
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++|+. ..++++ +||++++||++ +|+|||||||||||++|+|+++|++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~------vsl~i~~Ge~~---~llGpsGsGKSTLLr~iaGl~~p~~ 59 (362)
T TIGR03258 5 GIRIDHLRVAYGA-NTVLDD------LSLEIEAGELL---ALIGKSGCGKTTLLRAIAGFVKAAG 59 (362)
T ss_pred EEEEEEEEEEECC-eEEEee------eEEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4789999999986 456777 99999999999 9999999999999999999999874
No 159
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.68 E-value=1.2e-16 Score=102.86 Aligned_cols=52 Identities=25% Similarity=0.248 Sum_probs=47.6
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++++| ++++ ++|++++|+++ +|+|+||||||||+++|+|+..|++
T Consensus 3 ~~l~~~~l~~~~-----~l~~------vs~~i~~G~~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (182)
T cd03215 3 PVLEVRGLSVKG-----AVRD------VSFEVRAGEIV---GIAGLVGNGQTELAEALFGLRPPAS 54 (182)
T ss_pred cEEEEeccEEEe-----eecc------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 478999999988 5666 99999999999 9999999999999999999998864
No 160
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.68 E-value=1.5e-16 Score=99.88 Aligned_cols=54 Identities=30% Similarity=0.307 Sum_probs=48.4
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++. .++++ ++|++++||++ +|+|+||||||||+++|+|+.+|++
T Consensus 1 l~~~~l~~~~~~~-~~l~~------~~~~~~~Ge~~---~i~G~nGsGKStLl~~l~G~~~~~~ 54 (144)
T cd03221 1 IELENLSKTYGGK-LLLKD------ISLTINPGDRI---GLVGRNGAGKSTLLKLIAGELEPDE 54 (144)
T ss_pred CEEEEEEEEECCc-eEEEe------eEEEECCCCEE---EEECCCCCCHHHHHHHHcCCCCCCc
Confidence 4689999999763 57777 99999999999 9999999999999999999998864
No 161
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.3e-16 Score=109.62 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=49.8
Q ss_pred eEEEeceeEEccCc----eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA----AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~----~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++|+.. ..++++ +||++++||++ +|+|+||||||||+++|+|+..|++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 61 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYD------VNVSIPSGSYV---AIIGHTGSGKSTLLQHLNGLLQPTS 61 (290)
T ss_pred EEEEEEEEEEECCCCcccccceee------EEEEEcCCCEE---EEECCCCCcHHHHHHHHhcCCCCCC
Confidence 48999999999742 247777 99999999999 9999999999999999999999864
No 162
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=9.7e-17 Score=117.10 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=49.9
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
||+++++++.|++ ..++++ +||++++|+++ +|+|||||||||||++|+|+.+|++
T Consensus 1 ml~i~~ls~~~~~-~~il~~------vsl~i~~Ge~~---~liG~NGsGKSTLl~~l~Gl~~p~~ 55 (530)
T PRK15064 1 MLSTANITMQFGA-KPLFEN------ISVKFGGGNRY---GLIGANGCGKSTFMKILGGDLEPSA 55 (530)
T ss_pred CEEEEEEEEEeCC-cEeEeC------CEEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4889999999986 457777 99999999999 9999999999999999999998864
No 163
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.68 E-value=1.3e-16 Score=102.66 Aligned_cols=53 Identities=34% Similarity=0.330 Sum_probs=47.9
Q ss_pred EEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 6 ELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 6 ~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++.|+. ..++++ ++|++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ~~~~l~~~~~~-~~~l~~------~~~~i~~G~~~---~l~G~nGsGKStLl~~i~G~~~~~~ 53 (180)
T cd03214 1 EVENLSVGYGG-RTVLDD------LSLSIEAGEIV---GILGPNGAGKSTLLKTLAGLLKPSS 53 (180)
T ss_pred CeeEEEEEECC-eeeEee------eEEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 47899999986 457777 99999999999 9999999999999999999998864
No 164
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.5e-16 Score=107.11 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=49.1
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.+++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+..|
T Consensus 11 ~~l~~~~l~~~~~~-~~il~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~i~Gl~~~ 64 (258)
T PRK14268 11 PQIKVENLNLWYGE-KQALKN------VSMQIPKNSVT---ALIGPSGCGKSTFIRCLNRMNDL 64 (258)
T ss_pred eeEEEeeeEEEeCC-eeeeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCc
Confidence 47899999999986 457777 99999999999 99999999999999999999875
No 165
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.1e-16 Score=105.79 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=48.6
Q ss_pred EEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++. ..++++ ++|++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~------i~~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 56 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRD------ISLDIPAGETV---ALVGPSGSGKSTLVNLIPRFYDVDS 56 (234)
T ss_pred CEEEEEEEEeCCCCccceee------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhccccCCC
Confidence 4789999999763 246666 99999999999 9999999999999999999998864
No 166
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.4e-16 Score=107.76 Aligned_cols=53 Identities=25% Similarity=0.240 Sum_probs=47.9
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+..
T Consensus 20 ~~l~~~~l~~~~~~-~~il~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~ 72 (268)
T PRK14248 20 HILEVKDLSIYYGE-KRAVND------ISMDIEKHAVT---ALIGPSGCGKSTFLRSINRMND 72 (268)
T ss_pred ceEEEEEEEEEeCC-ceeeec------eEEEEcCCCEE---EEECCCCCCHHHHHHHHHhccc
Confidence 47899999999986 457777 99999999999 9999999999999999999864
No 167
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.5e-16 Score=104.14 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=48.4
Q ss_pred ceEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.++.++|+++.|+.+ ..++++ ++|++++|+++ +|+||||||||||+++|+|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~il~~------~s~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 2 STLSWRNISFTTGKGRSKIPILKD------FSGVVKPGEMV---LVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ceEEEEccEEEeccCCCCceeeee------EEEEECCCcEE---EEECCCCCCHHHHHHHhcccCC
Confidence 367899999999642 457777 99999999999 9999999999999999999998
No 168
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.8e-16 Score=105.76 Aligned_cols=53 Identities=25% Similarity=0.219 Sum_probs=47.9
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+++++++++.|++ ..++++ ++|++++||++ +|+||||||||||+++|+|+..
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~------~s~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14239 4 PILQVSDLSVYYNK-KKALNS------VSLDFYPNEIT---ALIGPSGSGKSTLLRSINRMND 56 (252)
T ss_pred ceEEEEeeEEEECC-eeeeee------eeEEEcCCcEE---EEECCCCCCHHHHHHHHhcccc
Confidence 47999999999986 457777 99999999999 9999999999999999999853
No 169
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.68 E-value=1.3e-16 Score=104.58 Aligned_cols=55 Identities=27% Similarity=0.300 Sum_probs=48.9
Q ss_pred EEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|+.. ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~------i~~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 58 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKN------ISFSIKPGEKV---GIVGRTGSGKSSLLLALFRLVELSS 58 (221)
T ss_pred EEEEEEEEecCCCCcccccc------eEEEECCCCEE---EEECCCCCCHHHHHHHHHcCCCCCC
Confidence 6899999999742 356766 99999999999 9999999999999999999998864
No 170
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.68 E-value=2.7e-17 Score=110.70 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=51.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
||++++|+|+|+.+...+++ +||++++||++ -++||||||||||+|+|.+.++|++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~------vs~~i~~Gef~---fl~GpSGAGKSTllkLi~~~e~pt~ 56 (223)
T COG2884 1 MIRFENVSKAYPGGREALRD------VSFHIPKGEFV---FLTGPSGAGKSTLLKLIYGEERPTR 56 (223)
T ss_pred CeeehhhhhhcCCCchhhhC------ceEeecCceEE---EEECCCCCCHHHHHHHHHhhhcCCC
Confidence 68999999999887656666 99999999999 9999999999999999999999974
No 171
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.68 E-value=1.2e-16 Score=105.83 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=48.3
Q ss_pred EEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|+.. ..++++ ++|++++||++ +|+|+||||||||+++|+|+..|++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 56 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDN------ISLRIKPGEVV---GIVGRSGSGKSTLTKLIQRFYVPEN 56 (237)
T ss_pred CEEEEEEEecCCCCccceec------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCcCCCC
Confidence 4689999999642 356766 99999999999 9999999999999999999998863
No 172
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.68 E-value=1.5e-16 Score=105.86 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=48.3
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC--CCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP--VLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~--~~~ 67 (68)
|++++++++.|++ ..++++ +||++++|+++ +|+|+||||||||+++|+|+. +|+
T Consensus 1 ~i~~~nl~~~~~~-~~~l~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~~~~ 56 (248)
T PRK09580 1 MLSIKDLHVSVED-KAILRG------LNLEVRPGEVH---AIMGPNGSGKSTLSATLAGREDYEVT 56 (248)
T ss_pred CeEEEEEEEEeCC-eeeeec------ceeEEcCCCEE---EEECCCCCCHHHHHHHHcCCccCCCC
Confidence 4789999999986 457777 99999999999 999999999999999999995 465
No 173
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.68 E-value=2e-16 Score=105.57 Aligned_cols=55 Identities=24% Similarity=0.389 Sum_probs=48.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC--CCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH--PVLV 67 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl--~~~~ 67 (68)
.+++++++++.|++ ..++++ ++|++++||++ +|+|+||||||||+++|+|+ ..|+
T Consensus 6 ~~l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~i~Gl~~~~~~ 62 (252)
T CHL00131 6 PILEIKNLHASVNE-NEILKG------LNLSINKGEIH---AIMGPNGSGKSTLSKVIAGHPAYKIL 62 (252)
T ss_pred ceEEEEeEEEEeCC-EEeeec------ceeEEcCCcEE---EEECCCCCCHHHHHHHHcCCCcCcCC
Confidence 47999999999986 457777 99999999999 99999999999999999998 3554
No 174
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.9e-16 Score=106.74 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=48.4
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..
T Consensus 12 ~~l~~~~l~~~~~~-~~il~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 12 SKIQVRNLNFYYGK-FHALKN------INLDIAKNQVT---AFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred ceEEEEEEEEEeCC-eEEeec------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhcccc
Confidence 37899999999986 457777 99999999999 9999999999999999999986
No 175
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.68 E-value=1.2e-16 Score=105.83 Aligned_cols=55 Identities=24% Similarity=0.198 Sum_probs=48.2
Q ss_pred EEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|+.. ..++++ ++|++++|+++ +|+|+||||||||+++|+|+.+|++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~------i~~~i~~Ge~~---~l~G~nGsGKSTLl~~i~G~~~~~~ 57 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKG------LSLTIPPGKTV---ALVGSSGCGKSTVVSLLERFYDPTS 57 (238)
T ss_pred CeEEEEEEecCCCCCccceec------eEEEecCCCEE---EEEeCCCCCHHHHHHHHhccCCCCC
Confidence 4689999999742 346666 99999999999 9999999999999999999998864
No 176
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.9e-16 Score=108.10 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=49.7
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+++++++++++|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+..|
T Consensus 20 ~~l~i~nl~~~~~~-~~il~~------vs~~i~~Ge~~---~I~G~nGsGKSTLl~~l~Gl~~p 73 (276)
T PRK14271 20 PAMAAVNLTLGFAG-KTVLDQ------VSMGFPARAVT---SLMGPTGSGKTTFLRTLNRMNDK 73 (276)
T ss_pred cEEEEeeEEEEECC-EEEeee------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhccCCc
Confidence 47899999999986 567777 99999999999 99999999999999999999886
No 177
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.6e-16 Score=108.62 Aligned_cols=56 Identities=27% Similarity=0.256 Sum_probs=49.9
Q ss_pred ceEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 3 AIEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.+++++++++.|++. ..++++ ++|++++||++ +|+||||||||||+++|+|+..|+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~------v~l~i~~Ge~~---~I~G~nGaGKSTLl~~l~G~~~p~ 60 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALND------ISFSIPRGSWT---ALIGHNGSGKSTISKLINGLLLPD 60 (282)
T ss_pred ceEEEEEEEEEcCCCCccceee------EEEEEcCCCEE---EEECCCCCcHHHHHHHHhcccCCC
Confidence 378999999999642 346777 99999999999 999999999999999999999886
No 178
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.67 E-value=2e-16 Score=102.68 Aligned_cols=54 Identities=30% Similarity=0.243 Sum_probs=47.7
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|+. .. +.+ +||++++||++ +|+|+||||||||+++|+|+..|++
T Consensus 1 ~l~~~~l~~~~~~-~~-l~~------vs~~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (195)
T PRK13541 1 MLSLHQLQFNIEQ-KN-LFD------LSITFLPSAIT---YIKGANGCGKSSLLRMIAGIMQPSS 54 (195)
T ss_pred CeEEEEeeEEECC-cE-EEE------EEEEEcCCcEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4789999999976 33 335 99999999999 9999999999999999999998864
No 179
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.67 E-value=1.5e-16 Score=101.78 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=48.4
Q ss_pred EEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++|++. ..++++ ++|++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~------~~~~i~~Ge~~---~i~G~nGsGKStLl~~l~G~~~~~~ 56 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRN------VSFSIEPGESL---AIIGPSGSGKSTLARLILGLLRPTS 56 (173)
T ss_pred CEEEEEEEEcCCCCCcceee------eEEEECCCCEE---EEECCCCCCHHHHHHHHHhccCCCC
Confidence 4689999999752 346766 99999999999 9999999999999999999998863
No 180
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.67 E-value=1.4e-16 Score=116.97 Aligned_cols=58 Identities=26% Similarity=0.271 Sum_probs=51.3
Q ss_pred cceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 2 EAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
..+++++|+++.|++...++++ +||++.+|+++ +|+|||||||||||++|+|+..|++
T Consensus 2 ~~~i~~~nls~~~~~~~~il~~------is~~i~~Ge~~---~liG~NGsGKSTLl~~i~G~~~p~~ 59 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPKKEILKD------ISLSFFPGAKI---GVLGLNGAGKSTLLRIMAGVDKEFN 59 (552)
T ss_pred cEEEEEeeEEEecCCCCeeecC------ceEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 3589999999999722457766 99999999999 9999999999999999999998864
No 181
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.67 E-value=2.6e-16 Score=103.56 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=49.4
Q ss_pred eEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++.|+.+ ..++++ +||++++|+++ +|+|+||||||||+++|+|+.+|++
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~------vs~~i~~G~~~---~I~G~nGsGKStLl~~l~G~~~~~~ 59 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFD------INLEINPGEIV---ILTGPSGSGKTTLLTLIGGLRSVQE 59 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 36899999999752 457777 99999999999 9999999999999999999998863
No 182
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2e-16 Score=105.68 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=47.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 3 KISVKDLDLFYGD-FQALKK------INLDIEENQVT---ALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred eEEEEEEEEEECC-ceeeec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhcccc
Confidence 6889999999986 457777 99999999999 9999999999999999999875
No 183
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.5e-16 Score=114.46 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=51.8
Q ss_pred CcceEEEeceeEEccCce-----------------------EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHH
Q 035290 1 MEAIEELSQLSDSMRQAA-----------------------ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVL 57 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~-----------------------~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl 57 (68)
|..+|++++++|.|+... ..+++ +||++++||++ +|+||||||||||+
T Consensus 1 ~~~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~------isl~i~~Gei~---~LvG~NGsGKSTLL 71 (400)
T PRK10070 1 MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKD------ASLAIEEGEIF---VIMGLSGSGKSTMV 71 (400)
T ss_pred CCcEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEe------EEEEEcCCCEE---EEECCCCchHHHHH
Confidence 778899999999998742 13444 99999999999 99999999999999
Q ss_pred HHHhCCCCCCC
Q 035290 58 NSLIGHPVLVS 68 (68)
Q Consensus 58 ~~l~Gl~~~~~ 68 (68)
++|+|+++|++
T Consensus 72 r~I~Gl~~p~s 82 (400)
T PRK10070 72 RLLNRLIEPTR 82 (400)
T ss_pred HHHHcCCCCCC
Confidence 99999999874
No 184
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.1e-16 Score=105.64 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=47.6
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+..
T Consensus 2 ~~~~~~l~~~~~~-~~~l~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~ 53 (246)
T PRK14269 2 IAKTTNLNLFYGK-KQALFD------INMQIEQNKIT---ALIGASGCGKSTFLRCFNRMND 53 (246)
T ss_pred ceeeeeeEEEECC-Eeeeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcccC
Confidence 6789999999986 457777 99999999999 9999999999999999999975
No 185
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.6e-16 Score=112.52 Aligned_cols=56 Identities=29% Similarity=0.311 Sum_probs=49.7
Q ss_pred eEEEeceeEEccCc----eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA----AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~----~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
||++++|+|.|..+ ...+++ +||+|++||++ ||+|+||+|||||+|++++|++|++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~------vsL~I~~GeI~---GIIG~SGAGKSTLiR~iN~Le~Pts 60 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDD------VSLEIPKGEIF---GIIGYSGAGKSTLLRLINLLERPTS 60 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeecc------ceEEEcCCcEE---EEEcCCCCcHHHHHHHHhccCCCCC
Confidence 68999999999862 234444 99999999999 9999999999999999999999985
No 186
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.5e-16 Score=114.33 Aligned_cols=56 Identities=23% Similarity=0.286 Sum_probs=51.1
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 3 ~~l~~~~l~~~~~~-~~il~~------isl~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~p~~ 58 (501)
T PRK11288 3 PYLSFDGIGKTFPG-VKALDD------ISFDCRAGQVH---ALMGENGAGKSTLLKILSGNYQPDA 58 (501)
T ss_pred ceEEEeeeEEEECC-EEEEee------eeEEEeCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 58999999999986 457777 99999999999 9999999999999999999998864
No 187
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.9e-16 Score=106.01 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=49.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.+++++++++.|++ ..++++ +||++++|+++ +|+|+||||||||+++|+|+.+|+
T Consensus 6 ~~l~~~nl~~~~~~-~~il~~------is~~i~~Ge~~---~I~G~nGsGKSTLl~~l~Gl~~~~ 60 (261)
T PRK14258 6 PAIKVNNLSFYYDT-QKILEG------VSMEIYQSKVT---AIIGPSGCGKSTFLKCLNRMNELE 60 (261)
T ss_pred ceEEEeeEEEEeCC-eeEeec------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhcccCCC
Confidence 37899999999976 457777 99999999999 999999999999999999999874
No 188
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.3e-16 Score=106.76 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=48.4
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
++++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+..
T Consensus 9 ~~l~i~~v~~~~~~-~~il~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 9 TVLRTENLNVYYGS-FLAVKN------VWLDIPKNQIT---AFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred eEEEEeeeEEEECC-EEEeec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHHhhhc
Confidence 47899999999986 457777 99999999999 9999999999999999999975
No 189
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.9e-16 Score=109.77 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=50.5
Q ss_pred ceEEEeceeEEccCc----eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQA----AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~----~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|+.. ..++++ +||++++|+++ +|+|+||||||||+++|+|++.|++
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~------vsl~i~~Ge~~---~I~G~nGsGKSTLl~~L~Gl~~p~~ 80 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNN------ISYTFEKNKIY---FIIGNSGSGKSTLVTHFNGLIKSKY 80 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 478999999999742 246777 99999999999 9999999999999999999999864
No 190
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.3e-16 Score=105.75 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=49.4
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.+|++++++++|++ ..++++ ++|++++||++ +|+|+||||||||+++|+|+..|
T Consensus 15 ~~l~~~~l~~~~~~-~~vl~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~ 68 (265)
T PRK14252 15 QKSEVNKLNFYYGG-YQALKN------INMMVHEKQVT---ALIGPSGCGKSTFLRCFNRMHDL 68 (265)
T ss_pred ceEEEEEEEEEECC-eeeeee------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhcccCC
Confidence 47899999999986 467777 99999999999 99999999999999999999875
No 191
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.66 E-value=2.6e-16 Score=102.52 Aligned_cols=55 Identities=27% Similarity=0.421 Sum_probs=49.1
Q ss_pred eEEEeceeEEccCc-----eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC--CCC
Q 035290 4 IEELSQLSDSMRQA-----AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP--VLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-----~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~--~~~ 67 (68)
.++++++++.|+.. ..++++ ++|++++|+++ +|+||||||||||+++|+|+. .|+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~------~~~~i~~Ge~~---~l~G~nGsGKStLl~~i~Gl~~~~~~ 64 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKN------VSGKAKPGELT---AIMGPSGAGKSTLLNALAGRRTGLGV 64 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceec------ceEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 47899999999752 457777 99999999999 999999999999999999998 775
No 192
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.4e-16 Score=106.67 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=48.9
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.+|+++++++.|+. ..++++ ++|++++||++ +|+||||||||||+++|+|+..|
T Consensus 19 ~~l~~~nl~~~~~~-~~~l~~------vs~~i~~Ge~~---~IiG~nGsGKSTLl~~l~Gl~~~ 72 (274)
T PRK14265 19 SVFEVEGVKVFYGG-FLALVD------VHLKIPAKKII---AFIGPSGCGKSTLLRCFNRMNDL 72 (274)
T ss_pred ceEEEeeEEEEeCC-eEEEee------eeeEEcCCCEE---EEECCCCCCHHHHHHHHhccccc
Confidence 37999999999986 457777 99999999999 99999999999999999999763
No 193
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.6e-16 Score=104.53 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=48.3
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+++++++++.|++ ..++++ +||++.+||++ +|+|+||||||||+++|+|+..
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~------vs~~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14255 4 KIITSSDVHLFYGK-FEALKG------IDLDFNQNEIT---ALIGPSGCGKSTYLRTLNRMND 56 (252)
T ss_pred ceEEEEeEEEEECC-eeEEec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhcccc
Confidence 47899999999986 567777 99999999999 9999999999999999999864
No 194
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.7e-16 Score=104.22 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=47.0
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|+.. . .+ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 ~l~~~~l~~~~~~~--~-~~------is~~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~~~~ 53 (232)
T PRK10771 1 MLKLTDITWLYHHL--P-MR------FDLTVERGERV---AILGPSGAGKSTLLNLIAGFLTPAS 53 (232)
T ss_pred CeEEEEEEEEECCc--c-ce------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 47899999999752 2 24 99999999999 9999999999999999999998864
No 195
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.66 E-value=4e-16 Score=109.52 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=49.8
Q ss_pred ceEEEeceeEEccC------------ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQ------------AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~------------~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++|+++.|+. ...++++ +||++++||++ +|+|+||||||||+++|+|++.|++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~------vsl~i~~Ge~~---~lvG~sGsGKSTLlk~i~Gl~~p~~ 75 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDG------VTLRLYEGETL---GVVGESGCGKSTFARAIIGLVKATD 75 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEee------EEEEEcCCCEE---EEECCCCCCHHHHHHHHHCCCCCCC
Confidence 58999999999963 1245666 99999999999 9999999999999999999998863
No 196
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.66 E-value=3.1e-16 Score=102.27 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=49.7
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++|+.. ..++++ ++|++++|+++ +|+|+||||||||+++|+|+..|++
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~------isl~i~~G~~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 62 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKN------VSFKVKAGEKI---GIVGRTGAGKSTLILALFRFLEAEE 62 (207)
T ss_pred eEEEEEEEEEeCCCCcccccC------ceEEECCCCEE---EEECCCCCCHHHHHHHHhcccCCCC
Confidence 68899999999752 356666 99999999999 9999999999999999999998864
No 197
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.5e-16 Score=105.39 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=48.9
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.+++++++++.|++ ..++++ ++|++++||++ +|+|+||||||||+++|+|+..|
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~------isl~i~~Ge~~---~l~G~nGsGKSTLlk~l~Gl~~~ 59 (259)
T PRK14260 6 PAIKVKDLSFYYNT-SKAIEG------ISMDIYRNKVT---AIIGPSGCGKSTFIKTLNRISEL 59 (259)
T ss_pred ceEEEEEEEEEECC-eEeecc------eEEEEcCCCEE---EEECCCCCCHHHHHHHHHhhcCc
Confidence 36899999999986 457777 99999999999 99999999999999999999875
No 198
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.5e-16 Score=106.80 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=48.7
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
++++++++++.|++ ..++++ ++|++++||++ +|+||||||||||+++|+|+..
T Consensus 38 ~~l~i~~l~~~~~~-~~il~~------is~~i~~Ge~~---~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 38 TVIEARDLNVFYGD-EQALDD------VSMDIPENQVT---AMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred ceEEEEEEEEEECC-EeeEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhccCC
Confidence 47899999999986 467777 99999999999 9999999999999999999986
No 199
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.6e-16 Score=104.06 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=47.1
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+
T Consensus 2 ~~l~~~~~~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 2 VKIDARDVNFWYGD-FHALKG------ISMEIEEKSVV---AFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred cEEEEEEEEEEECC-EeEEee------eeEEEeCCCEE---EEECCCCCCHHHHHHHHhhh
Confidence 57899999999987 457777 99999999999 99999999999999999997
No 200
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.8e-16 Score=106.18 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=48.4
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+++++++++.|++ ..++++ ++|++++||++ +|+|+||||||||+++|+|+..
T Consensus 23 ~~l~~~~l~~~~~~-~~il~~------vsl~i~~Ge~~---~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 23 VVFDTQNLNLWYGE-DHALKN------INLDIHENEVT---AIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred eEEEEeeeEEEECC-cceeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHHhhcc
Confidence 37899999999986 457777 99999999999 9999999999999999999986
No 201
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=5e-16 Score=108.82 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=50.1
Q ss_pred cceEEEeceeEEccC---------ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 2 EAIEELSQLSDSMRQ---------AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~---------~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
..+|+++|+++.|+. ...++++ +||+|.+||++ +|+|+||||||||+++|+|++.|++
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~------vsl~i~~Ge~~---~IvG~sGsGKSTLl~~l~gl~~p~~ 69 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDG------VSFTLERGKTL---AVVGESGCGKSTLARLLTMIETPTG 69 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEee------eEEEECCCCEE---EEECCCCCcHHHHHHHHHcCCCCCC
Confidence 357999999999963 1245666 99999999999 9999999999999999999998863
No 202
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.65 E-value=1.3e-16 Score=105.88 Aligned_cols=54 Identities=26% Similarity=0.180 Sum_probs=46.6
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+.+++++++|++ ..++++ ++|++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 23 l~~~~~~~~~~~-~~il~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~p~~ 76 (224)
T cd03220 23 LGILGRKGEVGE-FWALKD------VSFEVPRGERI---GLIGRNGAGKSTLLRLLAGIYPPDS 76 (224)
T ss_pred hhhhhhhhhcCC-eEEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 446677777776 457777 99999999999 9999999999999999999998864
No 203
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=3.4e-16 Score=102.21 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=45.9
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++ .. .+ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 1 i~~~~l~~~~~~-~~--~~------is~~i~~Ge~~---~l~G~nGsGKSTLl~~l~gl~~~~~ 52 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MH------FDLTFAQGEIT---AIVGPSGSGKSTLLNLIAGFETPQS 52 (211)
T ss_pred CEEEeEEEEeCC-Ee--cc------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 468999999975 22 24 99999999999 9999999999999999999998864
No 204
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.65 E-value=4.4e-16 Score=103.74 Aligned_cols=53 Identities=25% Similarity=0.287 Sum_probs=48.4
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++++++++.|+. ..++++ +||++.+|+++ +|+||||||||||+++|+|+..|+
T Consensus 1 i~i~~l~~~~~~-~~il~~------is~~i~~Ge~~---~l~G~nGsGKSTLl~~i~G~~~~~ 53 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDD------VNLEVPTGSLV---ALLGPSGSGKSTLLRIIAGLEQPD 53 (237)
T ss_pred CEEEEEEEEECC-eeeeee------EEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCC
Confidence 468999999986 467777 99999999999 999999999999999999998875
No 205
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=3.9e-16 Score=103.59 Aligned_cols=54 Identities=26% Similarity=0.313 Sum_probs=48.7
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++|+. ..++++ ++|++++|+++ +|+|+||||||||+++|+|+.+|+.
T Consensus 1 l~~~~l~~~~~~-~~il~~------i~~~i~~Ge~~---~i~G~nGsGKSTLl~~l~g~~~~~~ 54 (232)
T cd03300 1 IELENVSKFYGG-FVALDG------VSLDIKEGEFF---TLLGPSGCGKTTLLRLIAGFETPTS 54 (232)
T ss_pred CEEEeEEEEeCC-eeeecc------ceEEECCCCEE---EEECCCCCCHHHHHHHHhcCCCCCc
Confidence 468999999987 457777 99999999999 9999999999999999999998863
No 206
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.65 E-value=1.4e-16 Score=110.58 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=50.3
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++|+|+|++...+ ++ +||++++|+++ +++|+||+||||++|||.|++.|++
T Consensus 2 ~L~ie~vtK~Fg~k~av---~~----isf~v~~G~i~---GllG~NGAGKTTtfRmILglle~~~ 56 (300)
T COG4152 2 ALEIEGVTKSFGDKKAV---DN----ISFEVPPGEIF---GLLGPNGAGKTTTFRMILGLLEPTE 56 (300)
T ss_pred ceEEecchhccCceeee---cc----eeeeecCCeEE---EeecCCCCCccchHHHHhccCCccC
Confidence 68899999999996555 55 99999999999 9999999999999999999999974
No 207
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.65 E-value=3.2e-16 Score=113.85 Aligned_cols=56 Identities=27% Similarity=0.245 Sum_probs=50.8
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++||+++|++...++++ +||++++|+.+ +|+||||||||||+++|+|+.+|++
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~------isl~i~~G~~v---aIvG~SGsGKSTLl~lL~g~~~p~~ 389 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDG------VSLDLPPGERV---AILGPSGSGKSTLLMLLTGLLDPLQ 389 (529)
T ss_pred eEEEEEEEEecCCCCceeec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 48899999999764457777 99999999999 9999999999999999999999974
No 208
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=5.6e-16 Score=105.27 Aligned_cols=57 Identities=28% Similarity=0.265 Sum_probs=51.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++++|.+...++++ +||++++|+++ +|+|+||||||||+++++|+..|++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~------v~~~i~~Ge~~---~i~G~nGsGKSTL~~~l~GLl~p~~ 58 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKD------VSLEIEKGERV---LLIGPNGSGKSTLLKLLNGLLKPTS 58 (235)
T ss_pred ceEEEEEEEEEcCCCceeeee------eEEEECCCCEE---EEECCCCCCHHHHHHHHcCcCcCCC
Confidence 578999999999875466766 99999999999 9999999999999999999999974
No 209
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.3e-16 Score=105.37 Aligned_cols=54 Identities=22% Similarity=0.193 Sum_probs=49.0
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.+++++++++.|++ ..++++ ++|++++||++ +|+|+||||||||+++|+|+..|
T Consensus 24 ~~l~~~nl~~~~~~-~~il~~------vs~~i~~Ge~~---~I~G~nGsGKSTLl~~laGl~~~ 77 (272)
T PRK14236 24 TALEVRNLNLFYGD-KQALFD------ISMRIPKNRVT---AFIGPSGCGKSTLLRCFNRMNDL 77 (272)
T ss_pred cEEEEEEEEEEECC-eeEeee------EEEEEcCCCEE---EEECCCCCCHHHHHHHHHhcCCC
Confidence 37899999999976 457777 99999999999 99999999999999999999764
No 210
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.65 E-value=3.5e-16 Score=102.69 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=48.1
Q ss_pred EEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 6 ELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 6 ~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++.++.+.|+....++++ ++|++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 2 ~~~~~~~~~~~~~~il~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~i~G~~~~~~ 55 (218)
T cd03290 2 QVTNGYFSWGSGLATLSN------INIRIPTGQLT---MIVGQVGCGKSSLLLAILGEMQTLE 55 (218)
T ss_pred eeeeeEEecCCCCcceee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhccCCCCC
Confidence 578899999754567777 99999999999 9999999999999999999998863
No 211
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=6.5e-16 Score=100.34 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=47.4
Q ss_pred ceEEEeceeEEccC---ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQ---AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~---~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
..++++++++.|+. ...++++ +||++++|+++ +|+||||||||||+++|+|+..
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~l~~------vs~~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~ 58 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQLLNN------ISGYVKPGTLT---ALMGESGAGKTTLLDVLAGRKT 58 (192)
T ss_pred cEEEEeeeEEEecCCCCceEeEEc------cEEEEeCCcEE---EEECCCCCCHHHHHHHHhCCCc
Confidence 36889999999974 2457777 99999999999 9999999999999999999853
No 212
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=5.6e-16 Score=108.42 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=48.3
Q ss_pred eEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 4 IEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 4 ~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+++++++++.|+.. ..++++ +||++++||++ +|+|+||||||||+++|+|++.|
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~------vsl~i~~Ge~~---~lvG~sGsGKSTL~~~l~Gll~~ 59 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDR------ISYSVKQGEVV---GIVGESGSGKSVSSLAIMGLIDY 59 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEee------eEEEECCCCEE---EEECCCCChHHHHHHHHHcCCCC
Confidence 78999999999753 246666 99999999999 99999999999999999999874
No 213
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=4.1e-16 Score=113.82 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=50.6
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 318 ~~l~~~~l~~~~~~-~~~l~~------is~~i~~Ge~~---~l~G~NGsGKSTLl~~i~G~~~p~~ 373 (530)
T PRK15064 318 NALEVENLTKGFDN-GPLFKN------LNLLLEAGERL---AIIGENGVGKTTLLRTLVGELEPDS 373 (530)
T ss_pred ceEEEEeeEEeeCC-ceeecC------cEEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 37899999999986 456766 99999999999 9999999999999999999998864
No 214
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5e-16 Score=115.81 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=50.5
Q ss_pred ceEEEeceeEEccC---ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQ---AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~---~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|+. ...++++ +||++++||++ +|+|+||||||||+++|+|++.|++
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~------is~~v~~Ge~~---~lvG~nGsGKSTLl~~l~Gll~p~~ 70 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRN------LSFSLQRGETL---AIVGESGSGKSVTALALMRLLEQAG 70 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEe------eEEEECCCCEE---EEECCCCChHHHHHHHHHcCCCCCC
Confidence 48999999999963 2356777 99999999999 9999999999999999999998863
No 215
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.7e-16 Score=108.30 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=48.2
Q ss_pred ceEEEeceeEEccC---ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQ---AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~---~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.+|+++|+++.|.. ...++++ +||+|.+||++ +|+|+||||||||+++|+|+++|
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~------vsl~i~~Ge~~---~ivG~sGsGKSTLl~~i~Gl~~~ 59 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDR------VSMTLTEGEIR---GLVGESGSGKSLIAKAICGVTKD 59 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEee------eEEEECCCCEE---EEECCCCCCHHHHHHHHHccCCC
Confidence 47899999999942 2346666 99999999999 99999999999999999999864
No 216
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=5.3e-16 Score=105.88 Aligned_cols=55 Identities=25% Similarity=0.342 Sum_probs=50.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++++++++..|+. ..++++ +||++++||++ +++|+||+||||||++|+|+.++.
T Consensus 2 ~mL~v~~l~~~YG~-~~~L~g------vsl~v~~Geiv---~llG~NGaGKTTlLkti~Gl~~~~ 56 (237)
T COG0410 2 PMLEVENLSAGYGK-IQALRG------VSLEVERGEIV---ALLGRNGAGKTTLLKTIMGLVRPR 56 (237)
T ss_pred CceeEEeEeecccc-eeEEee------eeeEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCC
Confidence 58999999999998 566666 99999999999 999999999999999999999875
No 217
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.65 E-value=6.5e-17 Score=109.85 Aligned_cols=56 Identities=23% Similarity=0.266 Sum_probs=50.3
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+++.+++|+|++....+++ +||++++||++ +|+|||||||||+||+|++++.|++
T Consensus 1 Ml~v~~l~K~y~~~v~Avrd------VSF~ae~Gei~---GlLG~NGAGKTT~LRmiatlL~P~~ 56 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRD------VSFEAEEGEIT---GLLGENGAGKTTLLRMIATLLIPDS 56 (245)
T ss_pred CeeeeehhhhccCHHhhhhh------eeEEeccceEE---EEEcCCCCCchhHHHHHHHhccCCC
Confidence 68999999999985434444 99999999999 9999999999999999999999985
No 218
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.65 E-value=5.3e-16 Score=101.31 Aligned_cols=53 Identities=23% Similarity=0.445 Sum_probs=47.1
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC--CCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP--VLV 67 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~--~~~ 67 (68)
++++++++.|++ ..++++ +||++++||++ +|+|+||||||||+++|+|+. .|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~------is~~i~~Ge~~---~i~G~nGsGKStLl~~l~G~~~~~p~ 55 (200)
T cd03217 1 LEIKDLHVSVGG-KEILKG------VNLTIKKGEVH---ALMGPNGSGKSTLAKTIMGHPKYEVT 55 (200)
T ss_pred CeEEEEEEEeCC-EEeeec------cceEECCCcEE---EEECCCCCCHHHHHHHHhCCCcCCCC
Confidence 468999999986 467777 99999999999 999999999999999999994 554
No 219
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.64 E-value=5.4e-16 Score=112.30 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=48.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|
T Consensus 1 ~l~i~~l~~~~~~-~~il~~------isl~i~~Ge~~---~liG~nGsGKSTLl~~i~G~~~~ 53 (500)
T TIGR02633 1 LLEMKGIVKTFGG-VKALDG------IDLEVRPGECV---GLCGENGAGKSTLMKILSGVYPH 53 (500)
T ss_pred CEEEEeEEEEeCC-eEeecc------eEEEEeCCcEE---EEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999986 457776 99999999999 99999999999999999999886
No 220
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=2e-16 Score=112.05 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=49.9
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++|.++++++.|+.. ..+.+ ++++|+.||.+ +++||||||||||||+||||+.|+.
T Consensus 1 m~i~i~~~~~~~~~~-~a~~d------i~l~i~~Ge~v---aLlGpSGaGKsTlLRiIAGLe~p~~ 56 (345)
T COG1118 1 MSIRINNVKKRFGAF-GALDD------ISLDIKSGELV---ALLGPSGAGKSTLLRIIAGLETPDA 56 (345)
T ss_pred Cceeehhhhhhcccc-ccccc------ceeeecCCcEE---EEECCCCCcHHHHHHHHhCcCCCCC
Confidence 368899999999984 44444 99999999999 9999999999999999999999984
No 221
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.64 E-value=4.9e-16 Score=114.47 Aligned_cols=58 Identities=29% Similarity=0.408 Sum_probs=53.2
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|.+.+++++++|+|+. +.++++ +||++++||+. +|+|+||+|||||+++|.|+++|++
T Consensus 1 ~~~~l~~~~itK~f~~---~~And~----V~l~v~~GeIH---aLLGENGAGKSTLm~iL~G~~~P~~ 58 (501)
T COG3845 1 MEPALEMRGITKRFPG---VVANDD----VSLSVKKGEIH---ALLGENGAGKSTLMKILFGLYQPDS 58 (501)
T ss_pred CCceEEEeccEEEcCC---EEecCc----eeeeecCCcEE---EEeccCCCCHHHHHHHHhCcccCCc
Confidence 5678999999999995 556677 99999999999 9999999999999999999999985
No 222
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.64 E-value=5.8e-16 Score=113.02 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=49.3
Q ss_pred ceEEEeceeEEccC---ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQ---AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~---~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++++++++++.|++ ...++++ +||++++||++ +|+||||||||||+++|+|+++|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~------isl~i~~Ge~~---~iiG~nGsGKSTLl~~i~G~~~~ 61 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVND------VSLQIEAGETL---ALVGESGSGKSVTALSILRLLPS 61 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeec------eEEEEeCCCEE---EEECCCCCcHHHHHHHHhcCCCC
Confidence 47999999999964 1357777 99999999999 99999999999999999999986
No 223
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=8.1e-16 Score=105.46 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=47.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
++++++++++.|++ ..++++ ++|++++||++ +|+||||||||||+++|+|+..
T Consensus 38 ~~l~~~~l~~~~~~-~~il~~------vsl~i~~Ge~~---~l~G~nGsGKSTLl~~L~Gl~~ 90 (286)
T PRK14275 38 PHVVAKNFSIYYGE-FEAVKK------VNADILSKYVT---AIIGPSGCGKSTFLRAINRMND 90 (286)
T ss_pred eEEEEeeeEEEECC-EEEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcccc
Confidence 36899999999976 457777 99999999999 9999999999999999999854
No 224
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.64 E-value=7e-16 Score=103.95 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=49.9
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++.|+.. ..++++ ++|++++|+++ +|+|+||||||||+++|+|+..|++
T Consensus 19 ~i~~~~l~~~~~~~~~~il~~------isl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~~~ 75 (257)
T cd03288 19 EIKIHDLCVRYENNLKPVLKH------VKAYIKPGQKV---GICGRTGSGKSSLSLAFFRMVDIFD 75 (257)
T ss_pred eEEEEEEEEEeCCCCCcceeE------EEEEEcCCCEE---EEECCCCCCHHHHHHHHHcccCCCC
Confidence 68999999999753 356777 99999999999 9999999999999999999998763
No 225
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.64 E-value=8e-16 Score=107.90 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=49.9
Q ss_pred cceEEEeceeEEccC---ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 2 EAIEELSQLSDSMRQ---AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~---~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
..+++++|+++.|.. ...++++ +||++++||++ +|+|+||||||||+++|+|++.|+
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~------vsl~i~~Ge~~---~ivG~sGsGKSTL~~~l~Gl~~p~ 69 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVND------LNFSLRAGETL---GIVGESGSGKSQTAFALMGLLAAN 69 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEee------eEEEEcCCCEE---EEECCCCchHHHHHHHHHcCCCCC
Confidence 458999999999953 1346666 99999999999 999999999999999999999884
No 226
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.64 E-value=7.3e-16 Score=113.39 Aligned_cols=56 Identities=29% Similarity=0.305 Sum_probs=50.9
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 323 ~~l~~~~l~~~~~~-~~~l~~------isl~i~~Ge~~---~l~G~NGsGKSTLl~~i~G~~~p~~ 378 (556)
T PRK11819 323 KVIEAENLSKSFGD-RLLIDD------LSFSLPPGGIV---GIIGPNGAGKSTLFKMITGQEQPDS 378 (556)
T ss_pred eEEEEEeEEEEECC-eeeecc------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 37899999999986 457777 99999999999 9999999999999999999998864
No 227
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.64 E-value=7.4e-16 Score=112.14 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=50.2
Q ss_pred ceEEEeceeEEccC----ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQ----AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~----~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ...++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~------is~~i~~Ge~~---~l~G~NGsGKSTLl~~l~Gl~~p~~ 338 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDN------VSLEVKEGEIF---GIVGTSGAGKTTLSKIIAGVLEPTS 338 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEee------EEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 37999999999952 2357777 99999999999 9999999999999999999998864
No 228
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=2.5e-16 Score=106.92 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=43.7
Q ss_pred EeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 7 LSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 7 ~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 27 ~~~~~~~~~~-~~il~~------is~~i~~Ge~~---~l~G~nGsGKSTLl~~L~Gl~~p~~ 78 (269)
T cd03294 27 KEEILKKTGQ-TVGVND------VSLDVREGEIF---VIMGLSGSGKSTLLRCINRLIEPTS 78 (269)
T ss_pred hhhhhhhcCC-ceEeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3456666655 345666 99999999999 9999999999999999999998863
No 229
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=6.8e-16 Score=115.55 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=50.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|++ ..++++ ++|++.+|+++ +|+|||||||||||++|+|+..|++
T Consensus 312 ~l~~~~l~~~y~~-~~il~~------isl~i~~Ge~~---~l~G~NGsGKSTLlk~l~G~~~p~~ 366 (638)
T PRK10636 312 LLKMEKVSAGYGD-RIILDS------IKLNLVPGSRI---GLLGRNGAGKSTLIKLLAGELAPVS 366 (638)
T ss_pred eEEEEeeEEEeCC-eeeecc------ceEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 7899999999986 457777 99999999999 9999999999999999999998874
No 230
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1e-15 Score=105.83 Aligned_cols=54 Identities=22% Similarity=0.174 Sum_probs=48.9
Q ss_pred cceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 2 EAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+.+++++++++.|++ ..++++ ++|++.+|+++ +|+|+||||||||+++|+|+..
T Consensus 43 ~~~l~i~nl~~~~~~-~~iL~~------is~~i~~Ge~~---~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 43 DAKLSVEDLDVYYGD-DHALKG------VSMDIPEKSVT---ALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred CceEEEEEEEEEeCC-eeeeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcccc
Confidence 347899999999987 456777 99999999999 9999999999999999999986
No 231
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.64 E-value=7.2e-16 Score=115.07 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=50.4
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|++ ..++++ +||++.+|+++ +|+|||||||||||++|+|+..|++
T Consensus 319 ~l~~~~l~~~~~~-~~il~~------vsl~i~~Ge~~---~l~G~NGsGKSTLlk~l~G~~~p~~ 373 (635)
T PRK11147 319 VFEMENVNYQIDG-KQLVKD------FSAQVQRGDKI---ALIGPNGCGKTTLLKLMLGQLQADS 373 (635)
T ss_pred eEEEeeeEEEECC-eEEEcC------cEEEEcCCCEE---EEECCCCCcHHHHHHHHhCCCCCCC
Confidence 7899999999986 457777 99999999999 9999999999999999999998864
No 232
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.64 E-value=5.9e-16 Score=106.59 Aligned_cols=56 Identities=27% Similarity=0.333 Sum_probs=51.2
Q ss_pred cceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 2 EAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++|+++|++..|++ +.++.+ +|++|++||.+ +|+|||||||||||++++|.+.|.
T Consensus 29 ~~li~l~~v~v~r~g-k~iL~~------isW~V~~ge~W---~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 29 EPLIELKNVSVRRNG-KKILGD------LSWQVNPGEHW---AIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred cceEEecceEEEECC-Eeeccc------cceeecCCCcE---EEECCCCCCHHHHHHHHhcccCCC
Confidence 457999999999998 567777 99999999999 999999999999999999998885
No 233
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.63 E-value=8.3e-16 Score=112.91 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=50.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 321 ~~l~~~~l~~~~~~-~~~l~~------isl~i~~Ge~~---~l~G~NGsGKSTLl~~l~G~~~p~~ 376 (552)
T TIGR03719 321 KVIEAENLSKGFGD-KLLIDD------LSFKLPPGGIV---GVIGPNGAGKSTLFRMITGQEQPDS 376 (552)
T ss_pred eEEEEeeEEEEECC-eeeecc------ceEEEcCCCEE---EEECCCCCCHHHHHHHHcCCCCCCC
Confidence 37899999999986 457777 99999999999 9999999999999999999998864
No 234
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.63 E-value=5.9e-16 Score=114.37 Aligned_cols=56 Identities=30% Similarity=0.314 Sum_probs=51.1
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++|+|+. ...|++ ++|++++||++ +|+|.||||||||+|+|+|.+.|++
T Consensus 7 ~ll~~~~i~K~Fgg-V~AL~~------v~l~v~~GEV~---aL~GeNGAGKSTLmKiLsGv~~p~~ 62 (500)
T COG1129 7 PLLELRGISKSFGG-VKALDG------VSLTVRPGEVH---ALLGENGAGKSTLMKILSGVYPPDS 62 (500)
T ss_pred ceeeeecceEEcCC-ceeecc------ceeEEeCceEE---EEecCCCCCHHHHHHHHhCcccCCC
Confidence 47999999999998 445555 99999999999 9999999999999999999999985
No 235
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.63 E-value=7.5e-16 Score=112.12 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=47.5
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC--CCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP--VLV 67 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~--~~~ 67 (68)
++++|+++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|+. .|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~------is~~i~~Ge~~---~iiG~nGsGKSTLl~~l~Gl~~~~p~ 55 (520)
T TIGR03269 1 IEVKNLTKKFDG-KEVLKN------ISFTIEEGEVL---GILGRSGAGKSVLMHVLRGMDQYEPT 55 (520)
T ss_pred CEEEEEEEEECC-eEeeec------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhhcccCCCC
Confidence 478999999976 457777 99999999999 999999999999999999997 565
No 236
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.63 E-value=6.4e-16 Score=102.08 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=48.1
Q ss_pred ceEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.++++++++++|... ..++++ ++|++++||++ +|+||||||||||+++|+|+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~------vsl~i~~Ge~~---~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 2 RVLPWWDVGLKAKNWNKYARILND------VSLHVESGQVM---AILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred ccceeecceeeeecCccccccccC------ceEEEcCCeEE---EEECCCCCCHHHHHHHHhCccC
Confidence 357899999999653 456666 99999999999 9999999999999999999988
No 237
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=101.40 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=47.9
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+++++++++.|++ ..++++ ++|++.+||++ +|+|+||||||||+++|+|+..
T Consensus 2 ~~l~~~~v~~~~~~-~~~l~~------~s~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~ 54 (250)
T PRK14266 2 YRIEVENLNTYFDD-AHILKN------VNLDIPKNSVT---ALIGPSGCGKSTFIRTLNRMND 54 (250)
T ss_pred cEEEEEeEEEEeCC-eEEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHHhhhc
Confidence 46889999999986 457777 99999999999 9999999999999999999864
No 238
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.62 E-value=7.2e-16 Score=102.80 Aligned_cols=41 Identities=27% Similarity=0.251 Sum_probs=37.5
Q ss_pred EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 19 ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 19 ~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++ +||++++|+++ +|+|+||||||||+++|+|+..|++
T Consensus 35 ~il~~------vs~~i~~Ge~~---~i~G~NGsGKSTLl~~i~Gl~~p~~ 75 (236)
T cd03267 35 EALKG------ISFTIEKGEIV---GFIGPNGAGKTTTLKILSGLLQPTS 75 (236)
T ss_pred eeeec------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCcCCCc
Confidence 46666 99999999999 9999999999999999999998864
No 239
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.62 E-value=1.2e-15 Score=110.28 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=48.6
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+.+|
T Consensus 259 ~~l~~~~l~~~~~~-~~il~~------vsl~i~~Ge~~---~i~G~NGsGKSTLl~~l~G~~~~ 312 (490)
T PRK10938 259 PRIVLNNGVVSYND-RPILHN------LSWQVNPGEHW---QIVGPNGAGKSTLLSLITGDHPQ 312 (490)
T ss_pred ceEEEeceEEEECC-eeEEee------ceEEEcCCCEE---EEECCCCCCHHHHHHHHcCCCCc
Confidence 47899999999986 456777 99999999999 99999999999999999998754
No 240
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=1.2e-15 Score=101.56 Aligned_cols=53 Identities=30% Similarity=0.404 Sum_probs=47.7
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++|++ . ++++ ++|++.+||++ +|+|+||||||||+++|+|+++|++
T Consensus 1 l~~~~l~~~~~~-~-~l~~------is~~i~~Ge~~---~i~G~nG~GKStLl~~l~G~~~p~~ 53 (235)
T cd03299 1 LKVENLSKDWKE-F-KLKN------VSLEVERGDYF---VILGPTGSGKSVLLETIAGFIKPDS 53 (235)
T ss_pred CeeEeEEEEeCC-c-eeee------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhCCcCCCc
Confidence 468999999976 3 5767 99999999999 9999999999999999999998864
No 241
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.62 E-value=1.1e-15 Score=100.29 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=46.0
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|+. .+.+ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 1 ~~~~~l~~~~~~---~~~~------~s~~i~~Ge~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 52 (213)
T TIGR01277 1 LALDKVRYEYEH---LPME------FDLNVADGEIV---AIMGPSGAGKSTLLNLIAGFIEPAS 52 (213)
T ss_pred CeEEeeeEEeCC---ccee------eEEEEeCCcEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 468999999974 2344 99999999999 9999999999999999999998864
No 242
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.4e-15 Score=107.17 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=46.0
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
||++ +++++|++ .. .+ +||++++||++ +|+||||||||||+++|+|++.|++
T Consensus 1 ~l~~-~l~k~~~~-~~--~~------vsl~i~~Ge~~---~l~G~nGsGKSTLl~~iaGl~~p~~ 52 (352)
T PRK11144 1 MLEL-NFKQQLGD-LC--LT------VNLTLPAQGIT---AIFGRSGAGKTSLINAISGLTRPQK 52 (352)
T ss_pred CeEE-EEEEEeCC-EE--EE------EEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 4777 99999986 32 25 99999999999 9999999999999999999999874
No 243
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=8.2e-16 Score=105.15 Aligned_cols=55 Identities=33% Similarity=0.342 Sum_probs=49.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
||+++|++++..+ +.++++ ++|++++||+. +|+||||+||||||+.|+|...|++
T Consensus 1 mi~a~nls~~~~G-r~ll~~------vsl~~~pGev~---ailGPNGAGKSTlLk~LsGel~p~~ 55 (259)
T COG4559 1 MIRAENLSYSLAG-RRLLDG------VSLDLRPGEVL---AILGPNGAGKSTLLKALSGELSPDS 55 (259)
T ss_pred CeeeeeeEEEeec-ceeccC------cceeccCCcEE---EEECCCCccHHHHHHHhhCccCCCC
Confidence 5889999999887 456655 99999999999 9999999999999999999999874
No 244
>PLN03073 ABC transporter F family; Provisional
Probab=99.61 E-value=1.7e-15 Score=115.28 Aligned_cols=57 Identities=23% Similarity=0.216 Sum_probs=51.1
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++...++++ +||++.+|+++ +|+|||||||||||++|+|+.+|++
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~------vsl~i~~Ge~i---~LvG~NGsGKSTLLk~L~Gll~p~~ 563 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKN------LNFGIDLDSRI---AMVGPNGIGKSTILKLISGELQPSS 563 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEec------cEEEEcCCCEE---EEECCCCCcHHHHHHHHhCCCCCCC
Confidence 478999999999654457777 99999999999 9999999999999999999998864
No 245
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2e-15 Score=101.04 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=46.2
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
-+++++++.|++ ..++++ ++|++.+||++ +|+|+||||||||+++|+|+..
T Consensus 6 ~~~~~l~~~~~~-~~~l~~------is~~i~~Ge~~---~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 6 ASVKNLNLWYGS-KQILFD------INLDIYKREVT---AFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred EEeeeEEEEECC-eeeeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHHhhcc
Confidence 468899999976 467777 99999999999 9999999999999999999976
No 246
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.61 E-value=2.2e-15 Score=110.36 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=50.6
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|++...++++ +||++++|+.+ +|+||||||||||+++|+|+.+|++
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~------i~~~i~~G~~~---aivG~sGsGKSTL~~ll~g~~~~~~ 377 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGP------INLTIKRGELL---FLIGGNGSGKSTLAMLLTGLYQPQS 377 (547)
T ss_pred eEEEEEEEEEeCCCCeEEec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 48899999999754457777 99999999999 9999999999999999999999874
No 247
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.61 E-value=1.6e-15 Score=112.62 Aligned_cols=56 Identities=29% Similarity=0.295 Sum_probs=51.6
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+|+++++++.|++ +.++.+ ++|++.+|+.+ ||||+|||||||||++|+|.+.|++
T Consensus 2 ~~i~~~~ls~~~g~-~~l~~~------~~l~~~~G~ri---GLvG~NGaGKSTLLkilaG~~~~~~ 57 (530)
T COG0488 2 SMITLENLSLAYGD-RPLLEN------VSLTLNPGERI---GLVGRNGAGKSTLLKILAGELEPDS 57 (530)
T ss_pred ceEEEeeeEEeeCC-ceeecC------CcceeCCCCEE---EEECCCCCCHHHHHHHHcCCCcCCC
Confidence 57899999999977 567777 99999999999 9999999999999999999998874
No 248
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.61 E-value=2.4e-15 Score=104.26 Aligned_cols=61 Identities=25% Similarity=0.275 Sum_probs=51.8
Q ss_pred CcceEEEeceeEEccCce------EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAA------ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~------~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+.+++++++++.|..+. .+.+.++ |||++++||++ +|+|+|||||||+-|+|.||+.|++
T Consensus 1 ~~~ll~v~~l~k~f~~~~~~~~~~~v~avd~----Vsf~i~~ge~~---glVGESG~GKSTlgr~i~~L~~pt~ 67 (268)
T COG4608 1 MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDG----VSFSIKEGETL---GLVGESGCGKSTLGRLILGLEEPTS 67 (268)
T ss_pred CCceEEEeccEEEEecccccCcccceEEecc----eeEEEcCCCEE---EEEecCCCCHHHHHHHHHcCcCCCC
Confidence 457899999999996432 1333355 99999999999 9999999999999999999999974
No 249
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.8e-15 Score=111.83 Aligned_cols=57 Identities=18% Similarity=0.164 Sum_probs=49.8
Q ss_pred ceEEEeceeEEccC----------ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQ----------AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~----------~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|+. ...++++ +||++++||++ +|+|+||||||||+++|+|+.+|++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~------vs~~i~~Ge~~---~lvG~nGsGKSTLlk~i~Gl~~p~~ 378 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEK------VSFDLWPGETL---SLVGESGSGKSTTGRALLRLVESQG 378 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEee------eEeEEcCCCEE---EEECCCCCCHHHHHHHHHcCCCCCC
Confidence 37899999999962 1346666 99999999999 9999999999999999999998863
No 250
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.6e-15 Score=109.79 Aligned_cols=52 Identities=31% Similarity=0.365 Sum_probs=46.8
Q ss_pred EeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 7 LSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 7 ~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++|+++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ~~nl~~~~~~-~~il~~------vs~~i~~Ge~~---~liG~nGsGKSTLl~~l~Gl~~p~~ 52 (491)
T PRK10982 1 MSNISKSFPG-VKALDN------VNLKVRPHSIH---ALMGENGAGKSTLLKCLFGIYQKDS 52 (491)
T ss_pred CCceEEEeCC-EEeeee------eeEEEcCCcEE---EEECCCCCCHHHHHHHHcCCCCCCc
Confidence 4689999986 457777 99999999999 9999999999999999999998864
No 251
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.60 E-value=1.9e-15 Score=113.27 Aligned_cols=56 Identities=25% Similarity=0.251 Sum_probs=50.6
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|+....++++ +||++++|+.+ +|+|+||||||||+++|+|+..|++
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~------isl~i~~G~~v---aIvG~SGsGKSTLlklL~gl~~p~~ 528 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSD------ISLTIKMNSKT---TIVGMSGSGKSTLAKLLVGFFQARS 528 (708)
T ss_pred cEEEEEEEEEcCCCCcceec------eeEEECCCCEE---EEECCCCCCHHHHHHHHhccCCCCC
Confidence 47899999999754567777 99999999999 9999999999999999999999974
No 252
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.60 E-value=2.5e-15 Score=112.31 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=50.3
Q ss_pred eEEEeceeEEccC-ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQ-AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~-~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++||+++|+. ...++++ +||++++||.+ +|+|+||||||||+++|+|+..|++
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~------isl~i~~Ge~v---aIvG~sGsGKSTLlklL~gl~~p~~ 507 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDD------VSLQIEPGEFV---AIVGPSGSGKSTLLRLLLGFETPES 507 (686)
T ss_pred eEEEEEEEEEcCCCCccceee------eEEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4889999999963 3457777 99999999999 9999999999999999999999974
No 253
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.60 E-value=2.1e-15 Score=98.46 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=43.7
Q ss_pred eceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 8 SQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 8 ~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++.|++ ..++.+ . |++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 4 ~~l~~~~~~-~~~l~~------~-~~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~p~~ 53 (177)
T cd03222 4 PDCVKRYGV-FFLLVE------L-GVVKEGEVI---GIVGPNGTGKTTAVKILAGQLIPNG 53 (177)
T ss_pred CCeEEEECC-EEEEcc------C-cEECCCCEE---EEECCCCChHHHHHHHHHcCCCCCC
Confidence 589999987 455544 5 899999999 9999999999999999999999874
No 254
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.60 E-value=4.5e-15 Score=101.26 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=49.4
Q ss_pred CcceEEEeceeEEccCc-------------------eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 1 MEAIEELSQLSDSMRQA-------------------AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~-------------------~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
|...++++|+.+.|... ..++++ ++|++++|+++ +|+||||||||||+++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~------is~~i~~Ge~~---~liG~NGsGKSTLlk~L~ 71 (264)
T PRK13546 1 MNVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDD------ISLKAYEGDVI---GLVGINGSGKSTLSNIIG 71 (264)
T ss_pred CCceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHh
Confidence 56678899999888541 124444 99999999999 999999999999999999
Q ss_pred CCCCCCC
Q 035290 62 GHPVLVS 68 (68)
Q Consensus 62 Gl~~~~~ 68 (68)
|+.+|++
T Consensus 72 Gl~~p~~ 78 (264)
T PRK13546 72 GSLSPTV 78 (264)
T ss_pred CCcCCCc
Confidence 9998863
No 255
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.60 E-value=1.9e-15 Score=104.20 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=41.3
Q ss_pred EEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 12 DSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 12 ~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++|++ ..++++ +||++++||++ +|+||||||||||+++|+|+++|++
T Consensus 1 k~y~~-~~~l~~------vs~~i~~Ge~~---~l~G~NGaGKSTLl~~l~Gl~~p~~ 47 (302)
T TIGR01188 1 KVYGD-FKAVDG------VNFKVREGEVF---GFLGPNGAGKTTTIRMLTTLLRPTS 47 (302)
T ss_pred CeeCC-eeEEee------eeEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 35665 456666 99999999999 9999999999999999999999874
No 256
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=9.5e-16 Score=104.20 Aligned_cols=55 Identities=24% Similarity=0.239 Sum_probs=50.0
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++|++|.|++ +.++.+ +|+++++|.+. +++||||+||||||.++++|...|+
T Consensus 1 MI~i~nv~K~y~~-~~vl~~------isl~i~~g~iT---s~IGPNGAGKSTLLS~~sRL~~~d~ 55 (252)
T COG4604 1 MITIENVSKSYGT-KVVLDD------VSLDIPKGGIT---SIIGPNGAGKSTLLSMMSRLLKKDS 55 (252)
T ss_pred CeeehhhhHhhCC-EEeecc------ceeeecCCcee---EEECCCCccHHHHHHHHHHhccccC
Confidence 5789999999998 556666 99999999999 9999999999999999999998874
No 257
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4.6e-15 Score=100.54 Aligned_cols=54 Identities=24% Similarity=0.166 Sum_probs=48.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
..+.++.+++.|++ ..++++ ++|++++||++ +|+|+||||||||+++|+|+..|
T Consensus 7 ~~~~~~~~~~~~~~-~~~l~~------vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p 60 (261)
T PRK14263 7 IVMDCKLDKIFYGN-FMAVRD------SHVPIRKNEIT---GFIGPSGCGKSTVLRSLNRMNDL 60 (261)
T ss_pred ceEEEEeEEEEeCC-EEEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHHccccc
Confidence 36788999999986 457777 99999999999 99999999999999999999876
No 258
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.59 E-value=3.1e-15 Score=110.00 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=50.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++.|++...++++ ++|++++||.+ +|+|+||||||||+++|+|+.+|++
T Consensus 340 ~i~~~~v~f~y~~~~~il~~------i~l~i~~Ge~i---aIvG~SGsGKSTLl~lL~gl~~p~~ 395 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQN------INLSVPSRGFV---ALVGHTGSGKSTLASLLMGYYPLTE 395 (592)
T ss_pred eEEEEEEEEEeCCCCceeec------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhcccCCCC
Confidence 48899999999754457777 99999999999 9999999999999999999999974
No 259
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.59 E-value=2.2e-15 Score=97.21 Aligned_cols=42 Identities=31% Similarity=0.342 Sum_probs=38.1
Q ss_pred eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 18 AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 18 ~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 5 ~~il~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~i~G~~~~~~ 46 (190)
T TIGR01166 5 PEVLKG------LNFAAERGEVL---ALLGANGAGKSTLLLHLNGLLRPQS 46 (190)
T ss_pred cceecc------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 346666 99999999999 9999999999999999999998864
No 260
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.59 E-value=2.3e-15 Score=114.69 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=50.8
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|+.. ..++++ +|+++++||++ +|+|+||||||||+|+|.|++.|++
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~------isL~I~~Ge~v---aIvG~SGsGKSTL~KLL~gly~p~~ 527 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLED------LSLEIPPGEKV---AIVGRSGSGKSTLLKLLLGLYKPQQ 527 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhc------eeEEeCCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 48999999999875 347777 99999999999 9999999999999999999999964
No 261
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2e-15 Score=109.67 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=47.2
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|+. ++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 265 ~l~~~~l~~~~~~---~l~~------isl~i~~Ge~~---~l~G~NGsGKSTLlk~i~Gl~~p~~ 317 (510)
T PRK09700 265 VFEVRNVTSRDRK---KVRD------ISFSVCRGEIL---GFAGLVGSGRTELMNCLFGVDKRAG 317 (510)
T ss_pred EEEEeCccccCCC---cccc------eeEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCcCCC
Confidence 6899999987642 5666 99999999999 9999999999999999999998864
No 262
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.59 E-value=2.9e-15 Score=112.23 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=50.4
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|+.. +.++++ +||++++||.+ +|+|+||||||||+++|+|+..|++
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~------isl~i~~Ge~v---aIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIEN------FSLTLQPGQRV---ALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred eEEEEEEEEecCCCCCCcccc------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 48899999999753 457777 99999999999 9999999999999999999999974
No 263
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.59 E-value=3.3e-15 Score=108.58 Aligned_cols=56 Identities=30% Similarity=0.280 Sum_probs=50.3
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|++. ..++++ +||++++|+.+ +|+||||||||||+++|+|+.+|++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~------i~l~i~~G~~~---~ivG~sGsGKSTL~~ll~g~~~~~~ 376 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRP------VSFTVPPGERV---ALVGPSGAGKSTLLNLLLGFVDPTE 376 (529)
T ss_pred eEEEEEEEEECCCCCcccccc------eeEEECCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 58899999999764 356776 99999999999 9999999999999999999999874
No 264
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2e-15 Score=109.78 Aligned_cols=54 Identities=28% Similarity=0.266 Sum_probs=47.6
Q ss_pred eEEEeceeEEccC--ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 4 IEELSQLSDSMRQ--AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 4 ~l~~~~v~~~~~~--~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+++++++++.|+. +..++++ +||++++||++ +|+||||||||||+++|+|+.+|
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~------vsl~i~~Ge~~---~l~G~NGsGKSTLlk~i~Gl~~~ 314 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDD------VSFSLRRGEIL---GIAGLVGAGRTELVQCLFGAYPG 314 (506)
T ss_pred eEEEecCccccccccccccccc------eeeEEcCCcEE---EEeCCCCCCHHHHHHHHhCCCCC
Confidence 6899999999942 2346666 99999999999 99999999999999999999884
No 265
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.59 E-value=3.1e-15 Score=109.57 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=50.4
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|++. ..++++ ++|++++|+.+ +|+|+||||||||+++|+|+.+|++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~------i~l~i~~G~~~---aIvG~sGsGKSTLl~ll~gl~~p~~ 397 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRN------INFKIPAGKTV---ALVGRSGSGKSTIANLLTRFYDIDE 397 (582)
T ss_pred eEEEEEEEEecCCCCCccccC------ceEEeCCCCEE---EEECCCCCCHHHHHHHHHhccCCCC
Confidence 48999999999753 457777 99999999999 9999999999999999999999974
No 266
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.59 E-value=2.2e-15 Score=109.11 Aligned_cols=54 Identities=28% Similarity=0.234 Sum_probs=47.6
Q ss_pred eEEEeceeEEccC--ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 4 IEELSQLSDSMRQ--AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 4 ~l~~~~v~~~~~~--~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+++++++++.|+. ...++++ +||++++||++ +|+||||||||||+++|+|+.+|
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~------is~~i~~Ge~~---~l~G~NGsGKSTLl~~l~G~~~p 312 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDD------VSFSLRRGEIL---GVAGLVGAGRTELVQALFGAYPG 312 (500)
T ss_pred eEEEeCCccccccccccccccc------ceeEEeCCcEE---EEeCCCCCCHHHHHHHHhCCCCC
Confidence 6899999999832 2346666 99999999999 99999999999999999999985
No 267
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=3.9e-15 Score=97.48 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=42.6
Q ss_pred ceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 9 QLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 9 ~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++|+|++. .+ + ++|++++ |++ +|+||||||||||+++|+|+.+|++
T Consensus 5 ~l~~~~~~~-~~--~------vsl~i~~-e~~---~i~G~nGsGKSTLl~~l~G~~~~~~ 51 (214)
T cd03297 5 DIEKRLPDF-TL--K------IDFDLNE-EVT---GIFGASGAGKSTLLRCIAGLEKPDG 51 (214)
T ss_pred eeeEecCCe-ee--C------ceEEEcc-eeE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 899999873 33 6 9999999 999 9999999999999999999998864
No 268
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.58 E-value=6.2e-15 Score=110.49 Aligned_cols=59 Identities=25% Similarity=0.262 Sum_probs=52.7
Q ss_pred CcceEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|..+++++|+++.|+.. ..++++ ++|++++||++ +|+|+||||||||+++|+|+.+|++
T Consensus 1 ~~~~l~~~nl~~~y~~~~~~~~il~~------vs~~i~~Ge~~---~l~G~nGsGKSTLl~~i~Gl~~~~~ 62 (648)
T PRK10535 1 MTALLELKDIRRSYPSGEEQVEVLKG------ISLDIYAGEMV---AIVGASGSGKSTLMNILGCLDKPTS 62 (648)
T ss_pred CCcEEEEeeEEEEeCCCCCCeeeeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 67799999999999642 357777 99999999999 9999999999999999999998864
No 269
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=6.7e-15 Score=92.50 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=45.9
Q ss_pred EeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 7 LSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 7 ~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++++++.|.+ ..++.+ ++|++++|+++ +|+|+||||||||+++|+|++.|+
T Consensus 2 ~~~~~~~~~~-~~~l~~------~~~~i~~g~~~---~i~G~nGsGKStll~~l~g~~~~~ 52 (157)
T cd00267 2 IENLSFRYGG-RTALDN------VSLTLKAGEIV---ALVGPNGSGKSTLLRAIAGLLKPT 52 (157)
T ss_pred eEEEEEEeCC-eeeEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCC
Confidence 6789999976 356777 99999999999 999999999999999999999875
No 270
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.58 E-value=4.6e-15 Score=109.18 Aligned_cols=56 Identities=27% Similarity=0.233 Sum_probs=50.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++|++...++++ ++|++++|+.+ +|+|+||||||||+++|+|+.+|++
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~------inl~i~~G~~v---~IvG~sGsGKSTLl~lL~gl~~p~~ 389 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVED------VSFEAKPGQTV---AIVGPTGAGKSTLINLLQRVFDPQS 389 (588)
T ss_pred eEEEEEEEEEeCCCCceecc------eeEEECCCCEE---EEECCCCCCHHHHHHHHhcCcCCCC
Confidence 48899999999754457777 99999999999 9999999999999999999999874
No 271
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.58 E-value=6.3e-15 Score=103.86 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=43.2
Q ss_pred ceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 9 QLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 9 ~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++.|++ .. + + ++|++++||++ +|+||||||||||+++|+|+++|++
T Consensus 4 ~l~~~~~~-~~-~-~------isl~i~~Gei~---~l~G~nGsGKSTLl~~iaGl~~p~~ 51 (354)
T TIGR02142 4 RFSKRLGD-FS-L-D------ADFTLPGQGVT---AIFGRSGSGKTTLIRLIAGLTRPDE 51 (354)
T ss_pred EEEEEECC-EE-E-E------EEEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 78999986 33 3 6 99999999999 9999999999999999999999864
No 272
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.58 E-value=2.7e-15 Score=102.53 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=48.7
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
..++++++++.|+++ .++++ ++++|++++++ +++||||||||||||+++.+..+.
T Consensus 6 ~~~~~~~l~~yYg~~-~aL~~------i~l~i~~~~VT---AlIGPSGcGKST~LR~lNRmndl~ 60 (253)
T COG1117 6 PAIEVRDLNLYYGDK-HALKD------INLDIPKNKVT---ALIGPSGCGKSTLLRCLNRMNDLI 60 (253)
T ss_pred ceeEecceeEEECch-hhhcc------CceeccCCceE---EEECCCCcCHHHHHHHHHhhcccC
Confidence 468999999999984 45555 99999999999 999999999999999999987653
No 273
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.57 E-value=6.3e-15 Score=108.72 Aligned_cols=56 Identities=21% Similarity=0.183 Sum_probs=50.4
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|++. ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~------i~~~i~~G~~~---aivG~sGsGKSTL~~ll~g~~~p~~ 394 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKG------LSLQIKAGEKV---ALLGRTGCGKSTLLQLLTRAWDPQQ 394 (574)
T ss_pred eEEEEEEEEECCCCCCcceec------ceEEECCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 58899999999753 356777 99999999999 9999999999999999999999874
No 274
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.57 E-value=4.8e-15 Score=108.22 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=47.3
Q ss_pred ceEEEeceeEEccC----------ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQ----------AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~----------~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+++++++++.|+. ...++++ +||++++|+++ +|+||||||||||+++|+|+++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~------isl~i~~Ge~~---~i~G~nGsGKSTLlk~l~Gl~~ 337 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKN------ISFTLRPGETL---GLVGESGSGKSTTGLALLRLIN 337 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeec------ceeEEcCCCEE---EEECCCCCCHHHHHHHHhCcCC
Confidence 36899999999952 2356766 99999999999 9999999999999999999973
No 275
>PLN03073 ABC transporter F family; Provisional
Probab=99.57 E-value=7.6e-15 Score=111.70 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=47.1
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+|+++++++.|++ ..++++ +||++.+|+++ +|+|+|||||||||++|+|..
T Consensus 176 ~~I~i~nls~~y~~-~~ll~~------isl~i~~Ge~~---gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 176 KDIHMENFSISVGG-RDLIVD------ASVTLAFGRHY---GLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred eeEEEceEEEEeCC-CEEEEC------CEEEECCCCEE---EEECCCCCCHHHHHHHHcCCC
Confidence 47899999999986 457777 99999999999 999999999999999999864
No 276
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.2e-15 Score=100.21 Aligned_cols=55 Identities=25% Similarity=0.251 Sum_probs=49.0
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++.++++...++ +.++.+ ++|++.+||.+ .|.||||||||||||+|+|+.+|++
T Consensus 2 ~L~a~~L~~~R~e-~~lf~~------L~f~l~~Ge~~---~i~G~NG~GKTtLLRilaGLl~p~~ 56 (209)
T COG4133 2 MLEAENLSCERGE-RTLFSD------LSFTLNAGEAL---QITGPNGAGKTTLLRILAGLLRPDA 56 (209)
T ss_pred cchhhhhhhccCc-ceeecc------eeEEEcCCCEE---EEECCCCCcHHHHHHHHHcccCCCC
Confidence 5677888887776 567777 99999999999 9999999999999999999999974
No 277
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.57 E-value=7.3e-15 Score=109.96 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=50.2
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|++. ..++++ +||++++||.+ +|+|+||||||||+++|+|+.+|++
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~------i~l~i~~G~~i---aIvG~sGsGKSTLlklL~gl~~p~~ 519 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDN------VSLTIRPGEKV---AIIGRIGSGKSTLLKLLLGLYQPTE 519 (694)
T ss_pred eEEEEEEEEEeCCCCccceee------eeEEECCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 47899999999742 457777 99999999999 9999999999999999999999874
No 278
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.56 E-value=7.6e-15 Score=108.58 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=50.2
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|+++.|++...++++ ++|++++|+.+ +|+||||||||||+++|+|+.+|++
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~------i~~~i~~G~~~---~ivG~sGsGKSTL~~ll~g~~~~~~ 389 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFD------VSFEAKAGQTV---AIVGPTGAGKTTLINLLQRVYDPTV 389 (585)
T ss_pred eEEEEEEEEECCCCCccccc------eeEEEcCCCEE---EEECCCCCCHHHHHHHHccCCCCCC
Confidence 48899999999764456666 99999999999 9999999999999999999999874
No 279
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.56 E-value=8.8e-15 Score=108.95 Aligned_cols=59 Identities=25% Similarity=0.266 Sum_probs=49.5
Q ss_pred ceEEEeceeEEccCce--------EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAA--------ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~--------~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++|+++.|..+. .+.+.++ +||++++||++ +|+|+||||||||.|+|+|+.+|+.
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~----VSf~l~~GE~l---glVGeSGsGKSTlar~i~gL~~P~~ 345 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDD----VSFDLREGETL---GLVGESGSGKSTLARILAGLLPPSS 345 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeee----eeeEecCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 5788999999998421 2222244 99999999999 9999999999999999999999963
No 280
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.56 E-value=1.2e-14 Score=100.26 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=46.9
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.|+++++++. . ..++++ +||++++||++ +|+|+||||||||+++|+|++.|++
T Consensus 39 ~l~i~nls~~--~-~~vL~~------vs~~i~~Ge~~---~liG~NGsGKSTLl~~I~Gl~~p~~ 91 (282)
T cd03291 39 NLFFSNLCLV--G-APVLKN------INLKIEKGEML---AITGSTGSGKTSLLMLILGELEPSE 91 (282)
T ss_pred eEEEEEEEEe--c-ccceee------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 5889999985 2 346777 99999999999 9999999999999999999998863
No 281
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.56 E-value=1.1e-14 Score=109.42 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=49.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++++|+++.|+++..++++ +||++++||++ +|+||||||||||+++|+|+.+|+
T Consensus 451 ~i~~~nv~~~~~~~~~il~~------isl~i~~Ge~~---~IvG~nGsGKSTLl~lL~Gl~~~~ 505 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIES------LSFEVPSGNHL---LICGPNGCGKSSLFRILGELWPVY 505 (659)
T ss_pred eEEEEeeEEECCCCCeeeec------ceEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCC
Confidence 58899999999644457777 99999999999 999999999999999999998875
No 282
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.56 E-value=1.5e-15 Score=102.90 Aligned_cols=65 Identities=28% Similarity=0.405 Sum_probs=52.1
Q ss_pred CcceEEEeceeEEccCceEEeecCCCc--eeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVD--ENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~--~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+..++++|++|.|..+..++....+. +.+||++++|+.+ +++|.||||||||.+||+|+..|++
T Consensus 1 ~~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTl---aiIG~NGSGKSTLakMlaGmi~PTs 67 (267)
T COG4167 1 IETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTL---AIIGENGSGKSTLAKMLAGMIEPTS 67 (267)
T ss_pred CcchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEE---EEEccCCCcHhHHHHHHhcccCCCC
Confidence 567889999999986543332222222 3399999999999 9999999999999999999999974
No 283
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.56 E-value=1.3e-14 Score=108.24 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=44.9
Q ss_pred eEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|+.. ..++++ ++|++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 21 mL~lknL~~~~~~~~~~~IL~n------VSfsI~~GEiv---gIiGpNGSGKSTLLkiLaGLl~P~s 78 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNN------ISFEVPEGEIV---GIIGLNGSGKSTLSNLIAGVTMPNK 78 (549)
T ss_pred eeEEEEEEEecCCCccceEEee------eEEEEeCCCEE---EEEcCCCCCHHHHHHHHhCCCCCCc
Confidence 45555555555442 235666 99999999999 9999999999999999999998864
No 284
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=4.8e-15 Score=100.87 Aligned_cols=57 Identities=28% Similarity=0.339 Sum_probs=50.1
Q ss_pred ceEEEeceeEEccCce-EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAA-ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~-~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++.+++++..|.+.. .++++ +|+++++||++ +++|||||||||||+++||+..|+.
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~------vsL~ia~ge~v---v~lGpSGcGKTTLLnl~AGf~~P~~ 59 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALED------VSLTIASGELV---VVLGPSGCGKTTLLNLIAGFVTPSR 59 (259)
T ss_pred ceeehhheEEecCCcchhhhhc------cceeecCCCEE---EEEcCCCccHHHHHHHHhcCcCccc
Confidence 5678899999998742 35555 99999999999 9999999999999999999999873
No 285
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.56 E-value=8.5e-15 Score=110.41 Aligned_cols=56 Identities=20% Similarity=0.177 Sum_probs=50.2
Q ss_pred eEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++||+++|++. ..++++ +||++++||.+ +|+||||||||||+++|.|+.+|++
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~------isl~i~~Ge~v---aIvG~SGsGKSTLl~lL~gl~~p~~ 535 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKG------LTFTLHPGEVV---ALVGPSGSGKSTVAALLQNLYQPTG 535 (711)
T ss_pred eEEEEEEEEECCCCCCCccccC------ceEEEcCCCEE---EEECCCCCCHHHHHHHHHhccCCCC
Confidence 48999999999752 357777 99999999999 9999999999999999999999874
No 286
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.55 E-value=1.3e-14 Score=106.62 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=47.7
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
-++++||++.|.+...++++ +||++++|+.+ +|+||||||||||+++|+|+. |++
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~------i~l~i~~G~~v---aIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGP------LNFTLPAGQRI---ALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred eEEEEeeEEeccCCCeeeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCC-CCC
Confidence 47899999766443567777 99999999999 999999999999999999999 753
No 287
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.55 E-value=1e-14 Score=106.66 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=49.9
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|++. ..++++ +||++++|+.+ +|+||||||||||+++|+|+..|++
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~------~~~~i~~G~~~---~ivG~sGsGKSTL~~ll~g~~~~~~ 372 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRG------ISFRLQAGEAL---AIIGPSGSGKSTLARLIVGIWPPTS 372 (544)
T ss_pred eEEEEEEEEEcCCCCcccccc------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 48899999999653 456766 99999999999 9999999999999999999999874
No 288
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.55 E-value=1.3e-14 Score=99.80 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=46.9
Q ss_pred eEEEeceeEEccC-ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 4 IEELSQLSDSMRQ-AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 4 ~l~~~~v~~~~~~-~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.|++++++++|.. ...++++ +||+|++||++ +|+|+||||||||+++|+|+..
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~------isl~I~~Ge~~---~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLEN------ISFSISPGQRV---GLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred eEEEEEEEEEeCCCCCcceec------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhhhcC
Confidence 3789999999953 2456777 99999999999 9999999999999999999975
No 289
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.55 E-value=1.4e-14 Score=106.52 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=49.8
Q ss_pred eEEEeceeEEccCc----eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA----AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~----~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|++. ..++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~------vs~~i~~G~~~---aivG~sGsGKSTl~~ll~g~~~p~~ 396 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGP------IDLRIAQGDIV---FIVGENGCGKSTLAKLFCGLYIPQE 396 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceecc------ceEEEcCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 47899999999752 246766 99999999999 9999999999999999999999974
No 290
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.54 E-value=8.7e-16 Score=104.27 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=50.7
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++.++++.|+|+.+ .+..+ +||++++||++ +++||||+||||.+.|+.|+.+||+
T Consensus 3 ~~L~a~~l~K~y~kr-~Vv~~------Vsl~v~~GEiV---GLLGPNGAGKTT~Fymi~Glv~~d~ 58 (243)
T COG1137 3 STLVAENLAKSYKKR-KVVND------VSLEVNSGEIV---GLLGPNGAGKTTTFYMIVGLVRPDS 58 (243)
T ss_pred cEEEehhhhHhhCCe-eeeee------eeEEEcCCcEE---EEECCCCCCceeEEEEEEEEEecCC
Confidence 468899999999984 55555 99999999999 9999999999999999999999985
No 291
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.3e-14 Score=100.55 Aligned_cols=54 Identities=22% Similarity=0.245 Sum_probs=48.1
Q ss_pred eEEEeceeEEccC-ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 4 IEELSQLSDSMRQ-AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 4 ~l~~~~v~~~~~~-~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++++++++++|.. ...++++ +||++++||++ +|+|+||||||||+++|+|+..+
T Consensus 80 ~i~~~nls~~y~~~~~~~L~~------is~~I~~Ge~v---~IvG~~GsGKSTLl~~L~g~~~~ 134 (329)
T PRK14257 80 VFEIRNFNFWYMNRTKHVLHD------LNLDIKRNKVT---AFIGPSGCGKSTFLRNLNQLNDL 134 (329)
T ss_pred eEEEEeeEEEecCCCceeeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhccccc
Confidence 7899999999963 2457777 99999999999 99999999999999999999863
No 292
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.54 E-value=5.8e-15 Score=100.43 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=43.7
Q ss_pred eceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 8 SQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 8 ~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++|+....++++ +++ +.+|+++ +|+|||||||||||++|+|+++|++
T Consensus 4 ~~~~~~y~~~~~~l~~------i~~-i~~Ge~~---~IvG~nGsGKSTLlk~l~Gl~~p~~ 54 (255)
T cd03236 4 DEPVHRYGPNSFKLHR------LPV-PREGQVL---GLVGPNGIGKSTALKILAGKLKPNL 54 (255)
T ss_pred cCcceeecCcchhhhc------CCC-CCCCCEE---EEECCCCCCHHHHHHHHhCCcCCCC
Confidence 4789999764445555 884 9999999 9999999999999999999999874
No 293
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.54 E-value=1.7e-14 Score=105.43 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=49.7
Q ss_pred eEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++.|+.. ..++++ ++|++++||.+ +|+|+||||||||+++|+|+..|++
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~------inl~i~~Ge~i---~IvG~sGsGKSTLlklL~gl~~p~~ 394 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDG------LNLTVRPGETV---ALVGPSGAGKSTLFQLLLRFYDPQS 394 (576)
T ss_pred eEEEEEEEEECCCCCCCccccc------eeEEecCCCEE---EEECCCCCCHHHHHHHHHhccCCCC
Confidence 48899999999742 346766 99999999999 9999999999999999999999863
No 294
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.54 E-value=1.7e-14 Score=105.28 Aligned_cols=56 Identities=20% Similarity=0.124 Sum_probs=49.9
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
-++++|++++|++. ..++++ ++|++++||.+ +|+|+||||||||+++|+|+.+|++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~------inl~i~~G~~v---~IvG~sGsGKSTLl~lL~gl~~~~~ 386 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDS------ISLVIEPGETV---ALVGRSGSGKSTLVNLIPRFYEPDS 386 (571)
T ss_pred eEEEEEEEEEcCCCCCccccC------eeEEecCCCEE---EEECCCCCCHHHHHHHHHhccCCCC
Confidence 47899999999652 456766 99999999999 9999999999999999999999874
No 295
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.53 E-value=1.8e-14 Score=105.68 Aligned_cols=56 Identities=25% Similarity=0.220 Sum_probs=50.7
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++.|+++..++++ +||++++||.+ +|+|||||||||+++.|.++.+|++
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~------is~~i~~Ge~v---aiVG~sGsGKSTl~~LL~r~~~~~~ 383 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKD------ISFSIEPGEKV---AIVGPSGSGKSTLIKLLLRLYDPTS 383 (567)
T ss_pred eEEEEEEEEEcCCCCccccC------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhccCCCCC
Confidence 37899999999954567777 99999999999 9999999999999999999999853
No 296
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.3e-14 Score=105.01 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=47.3
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.+ ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 249 ~~i~~~~l~~~~---~~~l~~------vsl~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~p~~ 302 (491)
T PRK10982 249 VILEVRNLTSLR---QPSIRD------VSFDLHKGEIL---GIAGLVGAKRTDIVETLFGIREKSA 302 (491)
T ss_pred cEEEEeCccccc---Ccccce------eeEEEeCCcEE---EEecCCCCCHHHHHHHHcCCCcCCc
Confidence 368999999874 236666 99999999999 9999999999999999999998864
No 297
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.53 E-value=2e-14 Score=105.89 Aligned_cols=56 Identities=16% Similarity=0.152 Sum_probs=49.6
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++|+.. ..++++ +||++++|+.+ +|+||||||||||+++|+|+.+|++
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~------i~~~i~~G~~~---~ivG~sGsGKSTLl~ll~g~~~p~~ 369 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALEN------VNFTLKPGQML---GICGPTGSGKSTLLSLIQRHFDVSE 369 (569)
T ss_pred cEEEEEEEEECCCCCCccccC------eeEEECCCCEE---EEECCCCCCHHHHHHHHhcccCCCC
Confidence 47899999999753 356666 99999999999 9999999999999999999999874
No 298
>PRK13409 putative ATPase RIL; Provisional
Probab=99.53 E-value=2.3e-14 Score=106.99 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=49.1
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ . .+++ ++|++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 339 ~~l~~~~ls~~~~~-~-~l~~------~s~~i~~Geiv---~l~G~NGsGKSTLlk~L~Gl~~p~~ 393 (590)
T PRK13409 339 TLVEYPDLTKKLGD-F-SLEV------EGGEIYEGEVI---GIVGPNGIGKTTFAKLLAGVLKPDE 393 (590)
T ss_pred eEEEEcceEEEECC-E-EEEe------cceEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 36899999999976 3 3566 99999999999 9999999999999999999999874
No 299
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.52 E-value=2.5e-14 Score=107.22 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=50.0
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++|++. ..++++ +||++++|+.+ +|+|+||||||||+++|+|+.+|++
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~------i~l~i~~G~~v---aivG~sGsGKSTL~~ll~g~~~p~~ 511 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSN------LNLDIKPGEFI---GIVGPSGSGKSTLTKLLQRLYTPQH 511 (694)
T ss_pred eEEEEEEEEEcCCCCcccccc------ceEEECCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 48899999999643 456777 99999999999 9999999999999999999999874
No 300
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.52 E-value=2.2e-14 Score=96.66 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=46.1
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++.+++|.+.|+.. .. . +++++++||++ +|+|||||||||||++|||++.|.+
T Consensus 1 ~l~L~~V~~~y~~~-~~--~------fdl~v~~ge~v---Ai~GpSGaGKSTLLnLIAGF~~P~~ 53 (231)
T COG3840 1 MLALDDVRFSYGHL-PM--R------FDLTVPAGEIV---AILGPSGAGKSTLLNLIAGFETPAS 53 (231)
T ss_pred CccccceEEeeCcc-eE--E------EEEeecCCcEE---EEECCCCccHHHHHHHHHhccCCCC
Confidence 46788999999873 22 2 77899999999 9999999999999999999999974
No 301
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.52 E-value=1.8e-14 Score=95.20 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=34.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 6 vs~~i~~Ge~~---~l~G~NGsGKSTLlk~i~Gl~~~~s 41 (213)
T PRK15177 6 TDFVMGYHEHI---GILAAPGSGKTTLTRLLCGLDAPDE 41 (213)
T ss_pred eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCccCCC
Confidence 99999999999 9999999999999999999998874
No 302
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.52 E-value=1.9e-14 Score=96.42 Aligned_cols=57 Identities=30% Similarity=0.390 Sum_probs=50.9
Q ss_pred ceEEEeceeEEccCce---EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAA---ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~---~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+|+++++++..++.. .++++ ++|.+++||.+ +|+|||||||||||-+++|+++|++
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~------V~L~v~~Ge~v---aiVG~SGSGKSTLl~vlAGLd~~ss 64 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKG------VELVVKRGETV---AIVGPSGSGKSTLLAVLAGLDDPSS 64 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeec------ceEEecCCceE---EEEcCCCCcHHhHHHHHhcCCCCCC
Confidence 3799999999987642 46666 99999999999 9999999999999999999999985
No 303
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=2.1e-14 Score=98.65 Aligned_cols=36 Identities=28% Similarity=0.273 Sum_probs=35.3
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+||++++||.+ ||+|+||||||||+|+|+|.++|++
T Consensus 46 isf~i~~Ge~v---GiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 46 ISFEIYKGERV---GIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred ceEEEeCCCEE---EEECCCCCcHHHHHHHHhCccCCCC
Confidence 99999999999 9999999999999999999999985
No 304
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.52 E-value=2e-14 Score=102.49 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=41.0
Q ss_pred EEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 12 DSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 12 ~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ~~~~~-~~~l~~------vs~~i~~Gei~---~l~G~sGsGKSTLLr~L~Gl~~p~~ 47 (363)
T TIGR01186 1 KKTGG-KKGVND------ADLAIAKGEIF---VIMGLSGSGKSTTVRMLNRLIEPTA 47 (363)
T ss_pred CccCC-ceeEEe------eEEEEcCCCEE---EEECCCCChHHHHHHHHhCCCCCCc
Confidence 35665 446666 99999999999 9999999999999999999999874
No 305
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.51 E-value=4.7e-14 Score=116.58 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=51.1
Q ss_pred ceEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++|.|+++ ..++++ +||++++||++ +|+||||||||||+++|+|+..|++
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~------ISf~I~~GEi~---gLLG~NGAGKTTLlkmL~Gll~pts 1993 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDR------LCVGVRPGECF---GLLGVNGAGKTTTFKMLTGDTTVTS 1993 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEe------eEEEEcCCcEE---EEECCCCCcHHHHHHHHhCCCCCCc
Confidence 478999999999853 456666 99999999999 9999999999999999999999874
No 306
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.51 E-value=3.6e-14 Score=105.43 Aligned_cols=56 Identities=29% Similarity=0.336 Sum_probs=50.5
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.+++++++++.|++.+.++++ +||.+.+|+.+ +|+||||+||||||++|+|...|.
T Consensus 320 ~vl~~~~~~~~y~~~~~l~~~------~s~~i~~g~ri---aiiG~NG~GKSTLlk~l~g~~~~~ 375 (530)
T COG0488 320 LVLEFENVSKGYDGGRLLLKD------LSFRIDRGDRI---AIVGPNGAGKSTLLKLLAGELGPL 375 (530)
T ss_pred eeEEEeccccccCCCceeecC------ceEEecCCCEE---EEECCCCCCHHHHHHHHhhhcccC
Confidence 478999999999775677777 99999999999 999999999999999999987765
No 307
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.5e-14 Score=97.54 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=50.5
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+.++++++++.|+..... ++ +||++.|||++ +|+|+|||||||||++|++-+.|+.
T Consensus 5 PLL~V~~lsk~Yg~~~gc---~~----vsF~l~PGeVL---giVGESGSGKtTLL~~is~rl~p~~ 60 (258)
T COG4107 5 PLLSVSGLSKLYGPGKGC---RD----VSFDLYPGEVL---GIVGESGSGKTTLLKCISGRLTPDA 60 (258)
T ss_pred cceeehhhhhhhCCCcCc---cc----cceeecCCcEE---EEEecCCCcHHhHHHHHhcccCCCC
Confidence 578999999999985554 55 99999999999 9999999999999999999999873
No 308
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.50 E-value=2.4e-14 Score=87.34 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=33.8
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++|++++|+++ +|+|+||||||||+++|+|+.+|+
T Consensus 4 v~~~i~~g~~~---~i~G~nGsGKStLl~~l~g~~~~~ 38 (137)
T PF00005_consen 4 VSLEIKPGEIV---AIVGPNGSGKSTLLKALAGLLPPD 38 (137)
T ss_dssp EEEEEETTSEE---EEEESTTSSHHHHHHHHTTSSHES
T ss_pred eEEEEcCCCEE---EEEccCCCccccceeeeccccccc
Confidence 99999999999 999999999999999999999875
No 309
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.50 E-value=2.7e-14 Score=102.51 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=34.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+||++++||++ +|+|+||||||||+++|+|+.+|++
T Consensus 43 vsf~i~~Gei~---~I~G~nGsGKSTLlr~L~Gl~~p~~ 78 (382)
T TIGR03415 43 ASLDIEEGEIC---VLMGLSGSGKSSLLRAVNGLNPVSR 78 (382)
T ss_pred eEEEEcCCCEE---EEECCCCCcHHHHHHHHhCCCCCCC
Confidence 99999999999 9999999999999999999999864
No 310
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=6.4e-14 Score=96.14 Aligned_cols=53 Identities=21% Similarity=0.430 Sum_probs=48.0
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+++++|++....+++.+++. +|+++++||+. +|+||||||||||.+.|+|..
T Consensus 2 ~~L~I~dLhv~v~~~keILkg------vnL~v~~GEvh---aiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKG------VNLTVKEGEVH---AIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred ceeEEeeeEEEecCchhhhcC------cceeEcCCcEE---EEECCCCCCHHHHHHHHhCCC
Confidence 589999999998874467766 99999999999 999999999999999999986
No 311
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.48 E-value=5.7e-14 Score=112.91 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=50.1
Q ss_pred eEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.|+++||++.|+.+ ..++++ +||++++|+++ +|+||||||||||+++|+|++.|++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~------isl~i~~Ge~v---aIvG~SGsGKSTLl~lL~gl~~p~~ 439 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKD------LNFTLTEGKTY---AFVGESGCGKSTILKLIERLYDPTE 439 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceecc------ceEEEcCCCEE---EEECCCCCCHHHHHHHHHHhccCCC
Confidence 47899999999753 247777 99999999999 9999999999999999999999974
No 312
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.2e-14 Score=104.55 Aligned_cols=56 Identities=23% Similarity=0.214 Sum_probs=50.6
Q ss_pred eEEEeceeEEccCce-EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAA-ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~-~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|++.. .++++ +||++++||.+ +|+|+||||||||++.|.|...|++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~------~~l~l~~GEkv---AIlG~SGsGKSTllqLl~~~~~~~~ 392 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKN------FNLTLAQGEKV---AILGRSGSGKSTLLQLLAGAWDPQQ 392 (573)
T ss_pred eeeeccceeecCCCccchhhc------cceeecCCCeE---EEECCCCCCHHHHHHHHHhccCCCC
Confidence 579999999998753 57777 99999999999 9999999999999999999988874
No 313
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.47 E-value=6.9e-14 Score=101.62 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=43.1
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++. ++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 257 ~l~~~~l~~~------~l~~------vsl~i~~Ge~~---~liG~NGsGKSTLl~~l~G~~~p~~ 306 (501)
T PRK10762 257 RLKVDNLSGP------GVND------VSFTLRKGEIL---GVSGLMGAGRTELMKVLYGALPRTS 306 (501)
T ss_pred EEEEeCcccC------Cccc------ceEEEcCCcEE---EEecCCCCCHHHHHHHHhCCCCCCc
Confidence 5777887741 3555 99999999999 9999999999999999999998864
No 314
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.47 E-value=1.4e-13 Score=113.82 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=50.2
Q ss_pred eEEEeceeEEccC-ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQ-AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~-~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++.|+. ++.++++ ++|++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~------lsl~I~~Gei~---aLLG~NGAGKSTLLkiLaGLl~Pts 984 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDR------LNITFYENQIT---AFLGHNGAGKTTTLSILTGLLPPTS 984 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEe------eEEEEcCCcEE---EEECCCCChHHHHHHHHhcCCCCCc
Confidence 6899999999952 3456777 99999999999 9999999999999999999999874
No 315
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.47 E-value=7.2e-14 Score=92.89 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=34.5
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 4 is~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 39 (230)
T TIGR01184 4 VNLTIQQGEFI---SLIGHSGCGKSTLLNLISGLAQPTS 39 (230)
T ss_pred eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 99999999999 9999999999999999999998864
No 316
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=8.9e-14 Score=105.94 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=51.2
Q ss_pred eEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++||++.|+.+ ..++++ +||+++|||++ |+|||||+||||+.++|-.++.|++
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~------lsfti~pGe~v---ALVGPSGsGKSTiasLL~rfY~Pts 522 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKN------LSFTIRPGEVV---ALVGPSGSGKSTIASLLLRFYDPTS 522 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcC------ceeeeCCCCEE---EEECCCCCCHHHHHHHHHHhcCCCC
Confidence 68999999999875 357777 99999999999 9999999999999999999999974
No 317
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.46 E-value=3.6e-14 Score=94.84 Aligned_cols=55 Identities=27% Similarity=0.266 Sum_probs=46.2
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++.+.-++ ..++.+ +||++.+||++ +|.||||||||||+++++-|..|++
T Consensus 3 lle~kq~~y~a~~-a~il~~------isl~v~~Ge~i---aitGPSG~GKStllk~va~Lisp~~ 57 (223)
T COG4619 3 LLELKQVGYLAGD-AKILNN------ISLSVRAGEFI---AITGPSGCGKSTLLKIVASLISPTS 57 (223)
T ss_pred chHHHHHHhhcCC-Ceeecc------eeeeecCCceE---EEeCCCCccHHHHHHHHHhccCCCC
Confidence 4556666655555 456666 99999999999 9999999999999999999999974
No 318
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.46 E-value=8.7e-14 Score=101.50 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=42.9
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++ . .+++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 268 ~l~~~~l~~---~---~l~~------isl~i~~Ge~~---~l~G~NGsGKSTLl~~i~Gl~~p~~ 317 (510)
T PRK15439 268 VLTVEDLTG---E---GFRN------ISLEVRAGEIL---GLAGVVGAGRTELAETLYGLRPARG 317 (510)
T ss_pred eEEEeCCCC---C---Cccc------eeEEEcCCcEE---EEECCCCCCHHHHHHHHcCCCCCCC
Confidence 677888873 1 3444 99999999999 9999999999999999999998863
No 319
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.46 E-value=8.3e-14 Score=92.31 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=33.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++|++++|+++ +|+||||||||||+++|+|+..|
T Consensus 5 vs~~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 5 LNLSLKRGEVL---ALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred eeEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCC
Confidence 99999999999 99999999999999999999988
No 320
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.46 E-value=8.1e-14 Score=93.61 Aligned_cols=46 Identities=28% Similarity=0.364 Sum_probs=39.8
Q ss_pred EEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 6 ELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 6 ~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+++++++. ..+++ +||++++|+++ +|+|+||||||||+++|+|+..
T Consensus 2 ~~~~l~~~-----~~l~~------vsl~i~~Gei~---~l~G~nGsGKSTLl~~l~Gl~~ 47 (248)
T PRK03695 2 QLNDVAVS-----TRLGP------LSAEVRAGEIL---HLVGPNGAGKSTLLARMAGLLP 47 (248)
T ss_pred cccccchh-----ceecc------eEEEEcCCCEE---EEECCCCCCHHHHHHHHcCCCC
Confidence 56777774 14555 99999999999 9999999999999999999974
No 321
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.5e-13 Score=92.14 Aligned_cols=59 Identities=25% Similarity=0.276 Sum_probs=51.4
Q ss_pred CcceEEEeceeEEccCc------eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQA------AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~------~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+..+.+++++|+|--+ -.++++ +||+++.||++ ++-||||+|||||||+|.+-+.||+
T Consensus 1 m~~~l~v~~~~KtFtlH~q~Gi~LpV~~~------vslsV~aGECv---vL~G~SG~GKStllr~LYaNY~~d~ 65 (235)
T COG4778 1 MPTPLNVSNVSKTFTLHQQGGVRLPVLRN------VSLSVNAGECV---VLHGPSGSGKSTLLRSLYANYLPDE 65 (235)
T ss_pred CCceeeeecchhheEeeecCCEEeeeeec------eeEEecCccEE---EeeCCCCCcHHHHHHHHHhccCCCC
Confidence 67789999999998421 246666 99999999999 9999999999999999999999985
No 322
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.4e-13 Score=102.90 Aligned_cols=55 Identities=27% Similarity=0.319 Sum_probs=48.7
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++.|++++..+.+ ++|++++|+.+ +|+|+||||||||+++|+|+..|++
T Consensus 321 i~~~~l~~~y~~g~~~l~~------l~~t~~~g~~t---alvG~SGaGKSTLl~lL~G~~~~~~ 375 (559)
T COG4988 321 ISLENLSFRYPDGKPALSD------LNLTIKAGQLT---ALVGASGAGKSTLLNLLLGFLAPTQ 375 (559)
T ss_pred eeecceEEecCCCCcccCC------ceeEecCCcEE---EEECCCCCCHHHHHHHHhCcCCCCC
Confidence 4456999999886566666 99999999999 9999999999999999999999863
No 323
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.1e-13 Score=100.64 Aligned_cols=51 Identities=27% Similarity=0.278 Sum_probs=42.8
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++.. .++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 257 ~l~~~~~~~~-----~~l~~------isl~i~~Ge~~---~iiG~NGsGKSTLlk~l~G~~~p~~ 307 (501)
T PRK11288 257 RLRLDGLKGP-----GLREP------ISFSVRAGEIV---GLFGLVGAGRSELMKLLYGATRRTA 307 (501)
T ss_pred EEEEeccccC-----Ccccc------eeEEEeCCcEE---EEEcCCCCCHHHHHHHHcCCCcCCC
Confidence 4667777631 25555 99999999999 9999999999999999999998863
No 324
>PRK13409 putative ATPase RIL; Provisional
Probab=99.45 E-value=1e-13 Score=103.51 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=43.6
Q ss_pred ceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 9 QLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 9 ~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++|+.....|.+ ++ .+++|+++ +|+||||||||||+++|+|++.|+.
T Consensus 78 ~~~~~yg~~~~~L~~------l~-~i~~Gev~---gLvG~NGaGKSTLlkiL~G~l~p~~ 127 (590)
T PRK13409 78 EPVHRYGVNGFKLYG------LP-IPKEGKVT---GILGPNGIGKTTAVKILSGELIPNL 127 (590)
T ss_pred CceEEecCCceeEec------CC-cCCCCCEE---EEECCCCCCHHHHHHHHhCCccCCC
Confidence 489999864345655 88 89999999 9999999999999999999999874
No 325
>PLN03232 ABC transporter C family member; Provisional
Probab=99.44 E-value=2e-13 Score=109.73 Aligned_cols=56 Identities=25% Similarity=0.246 Sum_probs=50.4
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++||+++|+.. ..++++ +||++++||.+ ||+|+||||||||+++|.|+.+|++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~------isl~I~~Gekv---aIVG~SGSGKSTL~~lL~rl~~p~~ 1290 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHG------LSFFVSPSEKV---GVVGRTGAGKSSMLNALFRIVELEK 1290 (1495)
T ss_pred cEEEEEEEEEECCCCCccccc------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCcCCC
Confidence 48999999999653 457777 99999999999 9999999999999999999999874
No 326
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.43 E-value=1.3e-13 Score=93.76 Aligned_cols=56 Identities=29% Similarity=0.275 Sum_probs=50.3
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++++|+..+.+ ++ +||++.+||.- +||||||+||||+|.+|.|-.+|++
T Consensus 4 ~iL~~~~vsVsF~GF~Al---n~----ls~~v~~Gelr---~lIGpNGAGKTT~mD~ItGKtrp~~ 59 (249)
T COG4674 4 IILYLDGVSVSFGGFKAL---ND----LSFSVDPGELR---VLIGPNGAGKTTLMDVITGKTRPQE 59 (249)
T ss_pred ceEEEeceEEEEcceeee---ee----eEEEecCCeEE---EEECCCCCCceeeeeeecccCCCCc
Confidence 478999999999985544 44 99999999999 9999999999999999999999863
No 327
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.43 E-value=2.4e-13 Score=109.43 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=48.8
Q ss_pred eEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 4 IEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 4 ~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
-++++||+++|+++ ..++++ +||++++|+++ +|+||||||||||+++|.|++.|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~------lsl~i~~G~~v---AIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKD------LTFSCDSKKTT---AIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccC------eeEEEcCCCEE---EEECCCCCCHHHHHHHHHHhCCC
Confidence 48899999999742 357777 99999999999 99999999999999999999998
No 328
>PTZ00243 ABC transporter; Provisional
Probab=99.42 E-value=3.7e-13 Score=108.69 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=50.4
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.|+++||+++|+.. ..+|++ +||+|++||.+ +|+|++|||||||+++|.|+.+|++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~------vsf~I~~GekV---aIVGrTGSGKSTLl~lLlrl~~p~~ 1364 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRG------VSFRIAPREKV---GIVGRTGSGKSTLLLTFMRMVEVCG 1364 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeec------ceEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 48899999999764 347777 99999999999 9999999999999999999999864
No 329
>PLN03130 ABC transporter C family member; Provisional
Probab=99.42 E-value=3.8e-13 Score=108.99 Aligned_cols=56 Identities=25% Similarity=0.245 Sum_probs=50.4
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.|+++||+++|+.. ..++++ +||++++||.+ ||+|+||||||||+++|.|+.+|++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~------is~~I~~GekV---aIVGrSGSGKSTLl~lL~rl~~p~~ 1293 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHG------LSFEISPSEKV---GIVGRTGAGKSSMLNALFRIVELER 1293 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecc------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhCcCCCCC
Confidence 48999999999753 357777 99999999999 9999999999999999999999874
No 330
>PLN03211 ABC transporter G-25; Provisional
Probab=99.42 E-value=1.9e-13 Score=103.20 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=43.6
Q ss_pred EeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 7 LSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 7 ~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.+++++.|++ +.++++ +|+++++||++ +|+||||||||||+++|+|+.+|+
T Consensus 71 ~~~l~~~~~~-~~iL~~------vs~~i~~Ge~~---aI~GpnGaGKSTLL~iLaG~~~~~ 121 (659)
T PLN03211 71 ISDETRQIQE-RTILNG------VTGMASPGEIL---AVLGPSGSGKSTLLNALAGRIQGN 121 (659)
T ss_pred cccccccCCC-CeeeeC------CEEEEECCEEE---EEECCCCCCHHHHHHHHhCCCCCC
Confidence 3456677765 456777 99999999999 999999999999999999998774
No 331
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.41 E-value=3.2e-13 Score=91.28 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=30.1
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++||++ +|+||||||||||+++|+|+..|++
T Consensus 20 ~~i~~Ge~~---~i~G~NGsGKSTLlk~L~G~~~p~~ 53 (246)
T cd03237 20 GSISESEVI---GILGPNGIGKTTFIKMLAGVLKPDE 53 (246)
T ss_pred CCcCCCCEE---EEECCCCCCHHHHHHHHhCCCcCCC
Confidence 344589999 9999999999999999999998864
No 332
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=2e-13 Score=95.99 Aligned_cols=36 Identities=33% Similarity=0.306 Sum_probs=34.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+||+|++|+++ +++||||+||||+++||.|+..|++
T Consensus 43 isf~IP~G~iv---gflGaNGAGKSTtLKmLTGll~p~~ 78 (325)
T COG4586 43 ISFEIPKGEIV---GFLGANGAGKSTTLKMLTGLLLPTS 78 (325)
T ss_pred eeeecCCCcEE---EEEcCCCCcchhhHHHHhCccccCC
Confidence 99999999999 9999999999999999999999874
No 333
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.40 E-value=3.5e-13 Score=107.01 Aligned_cols=56 Identities=21% Similarity=0.178 Sum_probs=50.8
Q ss_pred eEEEeceeEEccCce--EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAA--ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~--~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++||+++|+.+. .++++ +||.+++|+++ +|+|||||||||++++|.+++.|++
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g------~sl~i~~G~~v---alVG~SGsGKST~i~LL~RfydP~~ 407 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKG------VSLKIPSGQTV---ALVGPSGSGKSTLIQLLARFYDPTS 407 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCC------eEEEeCCCCEE---EEECCCCCCHHHHHHHHHHhcCCCC
Confidence 589999999998764 46655 99999999999 9999999999999999999999974
No 334
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=4.4e-13 Score=100.26 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=48.6
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.|+++||++.|++++.+++. +||+|++||.+ ||+|+|||||||++|+|.++.+
T Consensus 351 ~I~F~dV~f~y~~k~~iL~g------vsf~I~kGekV---aIvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKG------VSFTIPKGEKV---AIVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred cEEEEeeEEEeCCCCceecc------eeEEecCCCEE---EEECCCCCCHHHHHHHHHHHhc
Confidence 48899999999987657777 99999999999 9999999999999999998866
No 335
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.40 E-value=1.9e-13 Score=92.51 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=50.7
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+.++++|+.|+|++ ..+++. +|++.++|+++ .|||.||||||||||||+=|+.|+.
T Consensus 5 ~~l~v~dlHK~~G~-~eVLKG------vSL~A~~GdVi---sIIGsSGSGKSTfLRCiN~LE~P~~ 60 (256)
T COG4598 5 NALEVEDLHKRYGE-HEVLKG------VSLQANAGDVI---SIIGSSGSGKSTFLRCINFLEKPSA 60 (256)
T ss_pred cceehhHHHhhccc-chhhcc------eeeecCCCCEE---EEecCCCCchhHHHHHHHhhcCCCC
Confidence 36889999999998 456666 99999999999 9999999999999999999999863
No 336
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.40 E-value=6.5e-13 Score=106.96 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=50.3
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++||+++|+.. ..++++ +||++++||.+ ||+|++|||||||+++|.|+.+|++
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~------is~~I~~Geki---aIVGrTGsGKSTL~~lL~rl~~~~~ 1340 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRH------INVTIHGGEKV---GIVGRTGAGKSSLTLGLFRINESAE 1340 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccc------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhcCccCCC
Confidence 48999999999753 357777 99999999999 9999999999999999999999864
No 337
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.39 E-value=1e-12 Score=98.06 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=49.4
Q ss_pred cceEEEeceeEEccCce---EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 2 EAIEELSQLSDSMRQAA---ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~~~---~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
..+++++|+++.|.... .++++ +||++++||++ ||+|+|||||||+.++|.|++++.
T Consensus 3 ~~lL~V~nL~v~~~~~~~~~~~v~~------vsf~v~~GE~l---gIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 3 SPLLEVENLTVEFATDGGRVPAVRD------VSFEVEPGEIL---GIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CceEEEeceEEEEecCCcceeeeec------ceEEecCCcEE---EEEcCCCCCHHHHHHHHhccCCCC
Confidence 45899999999996531 34555 99999999999 999999999999999999999865
No 338
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.39 E-value=8.7e-13 Score=87.29 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=48.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++.++||+.+.+. .-++++ ++|+|.+||++ -++||||||||||+..+.|.+.++
T Consensus 2 ~l~l~nvsl~l~g-~cLLa~------~n~Tia~Geiv---tlMGPSGcGKSTLls~~~G~La~~ 55 (213)
T COG4136 2 MLCLKNVSLRLPG-SCLLAN------VNFTIAKGEIV---TLMGPSGCGKSTLLSWMIGALAGQ 55 (213)
T ss_pred ceeeeeeeecCCC-ceEEEe------eeEEecCCcEE---EEECCCCccHHHHHHHHHhhcccC
Confidence 5778999988876 567888 99999999999 999999999999999999998764
No 339
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.39 E-value=9.3e-13 Score=93.12 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=46.0
Q ss_pred eEEEeceeEEccCce---EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 4 IEELSQLSDSMRQAA---ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~---~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+++++|++..|.... .++++ +||++++||++ +|+|+|||||||+.++|.|++.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~------vs~~i~~GE~l---giVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDG------VSFELKKGEIL---GIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred CceEeeeEEEEecCCccEEEEec------eeEEEcCCcEE---EEEcCCCCCHHHHHHHHHhccC
Confidence 478999999996532 34444 99999999999 9999999999999999999987
No 340
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.37 E-value=1.5e-12 Score=104.86 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=50.0
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++++++.|+.. ..++++ ++|++++|+.+ +|+||||||||||+++|+|+.+|++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~------isl~i~~G~~v---~IvG~~GsGKSTLl~~l~g~~~~~~ 692 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNG------ITFSIPEGALV---AVVGQVGCGKSSLLSALLAEMDKVE 692 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCccCC
Confidence 58899999999753 357777 99999999999 9999999999999999999998863
No 341
>PLN03232 ABC transporter C family member; Provisional
Probab=99.36 E-value=1.8e-12 Score=104.38 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=49.8
Q ss_pred eEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|+++.|+.. ..++++ +||++++|+.+ +|+||+|||||||+++|.|+.+|++
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~------inl~i~~Ge~v---aIvG~sGSGKSTLl~lLlG~~~~~~ 671 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSD------INLEIPVGSLV---AIVGGTGEGKTSLISAMLGELSHAE 671 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeee------eEEEEcCCCEE---EEECCCCCcHHHHHHHHhCCCcccC
Confidence 47899999999742 457777 99999999999 9999999999999999999998863
No 342
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.35 E-value=1.3e-12 Score=85.20 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=31.5
Q ss_pred eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 18 AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 18 ~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
..++++ +||++++|+++ +|+|||||||||||+++.
T Consensus 8 ~~~l~~------isl~i~~G~~~---~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 8 VHNLQN------LDVSIPLNVLV---VVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred eeeecc------eEEEEcCCCEE---EEECCCCCCHHHHHHHHh
Confidence 345655 99999999999 999999999999999986
No 343
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.35 E-value=2.1e-12 Score=103.62 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=47.0
Q ss_pred eEEEeceeEEcc---CceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 4 IEELSQLSDSMR---QAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 4 ~l~~~~v~~~~~---~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+++++|+++.|+ +.+.++++ +|+++++|+++ +|+|||||||||||++|+|+..
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~------vs~~i~~Ge~~---aI~G~sGaGKSTLL~~Lag~~~ 814 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNN------VDGWVKPGTLT---ALMGASGAGKTTLLNVLAERVT 814 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeC------CEEEEECCEEE---EEECCCCCCHHHHHHHHhCCCC
Confidence 578999999985 22467777 99999999999 9999999999999999999986
No 344
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.7e-12 Score=97.50 Aligned_cols=55 Identities=24% Similarity=0.272 Sum_probs=50.3
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.++++||++.|+.++.+++| +||.+.+|+.+ +++||||+||||+||+|..+.+.+
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~d------isF~v~pGktv---AlVG~SGaGKSTimRlLfRffdv~ 591 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSD------ISFTVQPGKTV---ALVGPSGAGKSTIMRLLFRFFDVN 591 (790)
T ss_pred eEEEEEeEEecCCCCceeec------ceEEecCCcEE---EEECCCCCchhHHHHHHHHHhhcc
Confidence 47899999999988889988 99999999999 999999999999999998876543
No 345
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.33 E-value=3e-12 Score=94.04 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=48.6
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+|++|+.+.|.+.. ++... +++++++||++ -|+|.||||||||+++|.|+.+|++
T Consensus 322 ~lelrnvrfay~~~~--FhvgP----iNl~ikrGelv---FliG~NGsGKST~~~LLtGL~~Pqs 377 (546)
T COG4615 322 TLELRNVRFAYQDNA--FHVGP----INLTIKRGELV---FLIGGNGSGKSTLAMLLTGLYQPQS 377 (546)
T ss_pred ceeeeeeeeccCccc--ceecc----eeeEEecCcEE---EEECCCCCcHHHHHHHHhcccCCCC
Confidence 478999999997632 22244 99999999999 9999999999999999999999975
No 346
>PLN03130 ABC transporter C family member; Provisional
Probab=99.32 E-value=3.4e-12 Score=103.53 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=49.6
Q ss_pred eEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|+++.|+.. ..++++ +||++++|+.+ +|+||+|||||||+++|.|+..|.+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~------inl~i~~Ge~v---aIvG~sGSGKSTLl~lLlG~~~~~~ 671 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSN------INLDVPVGSLV---AIVGSTGEGKTSLISAMLGELPPRS 671 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeec------eeEEecCCCEE---EEECCCCCCHHHHHHHHHHhhccCC
Confidence 47899999999742 356777 99999999999 9999999999999999999998863
No 347
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.31 E-value=4.9e-12 Score=101.89 Aligned_cols=53 Identities=28% Similarity=0.344 Sum_probs=47.9
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.++++||+++|+.. ..++++ +||+|++||.+ +|+|+||||||||+++|.|+..
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~------is~~I~~Gekv---aIvGrSGsGKSTLl~lL~rl~~ 1270 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQD------LSFSVEGGQRV---GLLGRTGSGKSTLLSALLRLLS 1270 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeec------cEEEEcCCCEE---EEECCCCCCHHHHHHHHhhhcC
Confidence 48899999999753 467777 99999999999 9999999999999999999975
No 348
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.31 E-value=2e-12 Score=85.60 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=31.6
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++||++ +|+|+||||||||+++|+|+..|++
T Consensus 1 l~i~~Ge~~---~l~G~nGsGKSTLl~~l~G~~~~~~ 34 (223)
T TIGR03771 1 LSADKGELL---GLLGPNGAGKTTLLRAILGLIPPAK 34 (223)
T ss_pred CccCCCcEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 568999999 9999999999999999999998864
No 349
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.29 E-value=3.9e-12 Score=85.16 Aligned_cols=55 Identities=27% Similarity=0.222 Sum_probs=49.2
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.|+++++++.|+.. ..+.| ++|+.+.||.+ +++||||+|||||+|.|+-++.|.+
T Consensus 2 sirv~~in~~yg~~-q~lfd------i~l~~~~getl---vllgpsgagkssllr~lnlle~p~s 56 (242)
T COG4161 2 SIQLNGINCFYGAH-QALFD------ITLDCPEGETL---VLLGPSGAGKSSLLRVLNLLEMPRS 56 (242)
T ss_pred ceEEcccccccccc-hheee------eeecCCCCCEE---EEECCCCCchHHHHHHHHHHhCCCC
Confidence 47899999999984 45556 99999999999 9999999999999999999988864
No 350
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.29 E-value=2.1e-12 Score=88.65 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=47.2
Q ss_pred eEEEeceeEEccCc----eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA----AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~----~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+++.++.+.|... ++++.. ++++|++|+|+ .++|.||||||||+++|+|-+.|++
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~------~sL~I~~g~Fv---tViGsNGAGKSTlln~iaG~l~~t~ 60 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNG------LSLEIAEGDFV---TVIGSNGAGKSTLLNAIAGDLKPTS 60 (263)
T ss_pred CcccccceeeecCCChhHHHHHhc------CceeecCCceE---EEEcCCCccHHHHHHHhhCccccCC
Confidence 46677888877543 245555 99999999999 9999999999999999999999874
No 351
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.25 E-value=1.4e-11 Score=88.18 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=50.3
Q ss_pred CcceEEEeceeEEccCce--------------E-------EeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHH
Q 035290 1 MEAIEELSQLSDSMRQAA--------------A-------LLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNS 59 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~--------------~-------~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~ 59 (68)
|+..++++|++|-|+.+. . ++-..+ +||++++||++ +|+|-||||||||+|+
T Consensus 1 ~~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~----~sl~v~~GeIf---ViMGLSGSGKSTLvR~ 73 (386)
T COG4175 1 MMVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVND----ASLDVEEGEIF---VIMGLSGSGKSTLVRL 73 (386)
T ss_pred CCceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeecc----ceeeecCCeEE---EEEecCCCCHHHHHHH
Confidence 556789999999997531 0 122233 99999999999 9999999999999999
Q ss_pred HhCCCCCCC
Q 035290 60 LIGHPVLVS 68 (68)
Q Consensus 60 l~Gl~~~~~ 68 (68)
+++|.+|++
T Consensus 74 ~NrLiept~ 82 (386)
T COG4175 74 LNRLIEPTR 82 (386)
T ss_pred HhccCCCCC
Confidence 999999974
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=99.23 E-value=2.3e-11 Score=98.30 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=45.0
Q ss_pred eEEEeceeEEccC------------ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 4 IEELSQLSDSMRQ------------AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 4 ~l~~~~v~~~~~~------------~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+.++||++..+. +..++++ +|+.+++|+++ +|+|||||||||||++|+|...
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~------vs~~i~~Gel~---aL~G~sGaGKTTLL~~LaG~~~ 931 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLRE------VTGAFRPGVLT---ALMGVSGAGKTTLMDVLAGRKT 931 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeC------cEEEEECCeEE---EEECCCCCCHHHHHHHHcCCCC
Confidence 4788999887631 1246766 99999999999 9999999999999999999865
No 353
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.23 E-value=2.2e-11 Score=98.16 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=34.6
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++|++++|+++ +|+|||||||||||++|+|+..|++
T Consensus 445 i~l~i~~G~~~---~I~G~~GsGKSTLl~~l~G~~~~~~ 480 (1490)
T TIGR01271 445 ISFKLEKGQLL---AVAGSTGSGKSSLLMMIMGELEPSE 480 (1490)
T ss_pred eEEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 99999999999 9999999999999999999998864
No 354
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.21 E-value=1.8e-11 Score=97.56 Aligned_cols=56 Identities=25% Similarity=0.200 Sum_probs=50.0
Q ss_pred eEEEeceeEEccCce--EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAA--ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~--~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
-++++||+++|+++. .++++ ++|++++|+.+ +|||||||||||...+|-.++.|+.
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~------l~l~i~~GqTv---ALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNN------LSLSIRAGQTV---ALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcC------CcEEecCCCEE---EEECCCCCCHHHHHHHHHHhcCCCC
Confidence 478999999998753 46666 99999999999 9999999999999999999999874
No 355
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.19 E-value=3.7e-11 Score=89.70 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=48.4
Q ss_pred eEEEeceeEEccC-ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQ-AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~-~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+.+++++..-+. ++.++++ ++|++.+||.+ +||||||||||||.|+|.|...|.+
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~------isF~l~~G~~l---gIIGPSgSGKSTLaR~lvG~w~p~~ 390 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKG------ISFALQAGEAL---GIIGPSGSGKSTLARLLVGIWPPTS 390 (580)
T ss_pred eeeEeeeeecCCCCCCcceec------ceeEecCCceE---EEECCCCccHHHHHHHHHcccccCC
Confidence 5788998876543 3467777 99999999999 9999999999999999999988863
No 356
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.19 E-value=4.9e-11 Score=90.04 Aligned_cols=54 Identities=26% Similarity=0.299 Sum_probs=48.4
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
..++++|++..-++...++++ .+|++++|+.+ -|.|+||||||||+|+|+|+-+
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~~------l~~~v~~G~~l---lI~G~SG~GKTsLlRaiaGLWP 444 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLSE------LNFEVRPGERL---LITGESGAGKTSLLRALAGLWP 444 (604)
T ss_pred ceeEEeeeeEECCCCCeeecc------ceeeeCCCCEE---EEECCCCCCHHHHHHHHhccCc
Confidence 468899999998876677777 99999999999 9999999999999999999854
No 357
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.16 E-value=2.2e-11 Score=91.33 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=50.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+.+.+.|+++.|.+...++.+ ++|-+..++.+ ++|||||+||||||+++.|.+.|..
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~------l~fgid~~srv---AlVGPNG~GKsTLlKl~~gdl~p~~ 444 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKK------LNFGIDLDSRV---ALVGPNGAGKSTLLKLITGDLQPTI 444 (614)
T ss_pred CeEEEeccccCCCCcchhhhh------hhcccCcccce---eEecCCCCchhhhHHHHhhcccccc
Confidence 467889999999875566666 99999999999 9999999999999999999998863
No 358
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.15 E-value=9.4e-11 Score=88.01 Aligned_cols=54 Identities=26% Similarity=0.388 Sum_probs=49.0
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
-+.++++++.|.. ..++++ +.|++.+|+.+ ||+|+|||||||+|++|+|-+.|.
T Consensus 75 dvk~~sls~s~~g-~~l~kd------~~~El~~g~ry---gLiG~nG~Gkst~L~~i~~~e~P~ 128 (614)
T KOG0927|consen 75 DVKIESLSLSFHG-VELIKD------VTLELNRGRRY---GLIGPNGSGKSTFLRAIAGREVPI 128 (614)
T ss_pred cceeeeeeeccCC-ceeeee------eeEEecCCceE---EEEcCCCCcHhHHHHHHhcCCCCC
Confidence 4788999999987 567777 99999999999 999999999999999999998884
No 359
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.14 E-value=5.2e-11 Score=89.03 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=36.8
Q ss_pred eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 18 AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 18 ~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+.++++ +|+++++||++ +|+|||||||||||++|+|...|.
T Consensus 38 ~~iL~~------vs~~i~~Ge~~---aI~G~sGsGKSTLL~~L~g~~~~~ 78 (617)
T TIGR00955 38 KHLLKN------VSGVAKPGELL---AVMGSSGAGKTTLMNALAFRSPKG 78 (617)
T ss_pred cccccC------CEEEEeCCeEE---EEECCCCCCHHHHHHHHhCCCCCC
Confidence 346666 99999999999 999999999999999999988763
No 360
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.14 E-value=8.2e-11 Score=72.17 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=27.9
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
++|++++|+++ +|+||||||||||++++.
T Consensus 8 vsl~i~~ge~v---~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 8 VLVDVYGKVGV---LITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEEcCCEEE---EEEcCCCCCHHHHHHHhh
Confidence 99999999999 999999999999999975
No 361
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.13 E-value=1e-10 Score=80.52 Aligned_cols=51 Identities=25% Similarity=0.317 Sum_probs=46.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.|+++++.+.|....+++.+ ++++++.|... -++|+|||||||||++|+|-
T Consensus 13 aievsgl~f~y~~~dP~~~D------fnldlp~gsRc---LlVGaNGaGKtTlLKiLsGK 63 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFD------FNLDLPAGSRC---LLVGANGAGKTTLLKILSGK 63 (291)
T ss_pred eEEEeccEEecccCCceEEE------EeeccCCCceE---EEEecCCCchhhhHHHhcCc
Confidence 68999999999866677777 99999999998 99999999999999999984
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.11 E-value=1.2e-10 Score=94.40 Aligned_cols=41 Identities=39% Similarity=0.504 Sum_probs=37.4
Q ss_pred EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 19 ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 19 ~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++ +||++++|+++ +|+||||||||||+++|+|+..|++
T Consensus 674 ~iL~~------isl~i~~G~~~---~IiG~nGsGKSTLL~~i~G~~~~~~ 714 (1560)
T PTZ00243 674 VLLRD------VSVSVPRGKLT---VVLGATGSGKSTLLQSLLSQFEISE 714 (1560)
T ss_pred eeEee------eEEEECCCCEE---EEECCCCCcHHHHHHHHhcCCCCCC
Confidence 45666 99999999999 9999999999999999999998863
No 363
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.10 E-value=1.4e-10 Score=90.08 Aligned_cols=56 Identities=25% Similarity=0.239 Sum_probs=48.7
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+.++++++.|+...... ++ +++.+++||++ |++|+|||||||+++||.|...|++
T Consensus 564 ~~~~~~L~k~y~~~~~Av--~~----ls~~V~~gecf---gLLG~NGAGKtT~f~mltG~~~~t~ 619 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDGAV--RG----LSFAVPPGECF---GLLGVNGAGKTTTFKMLTGETKPTS 619 (885)
T ss_pred eEEEcceeeeecchhhhh--cc----eEEEecCCceE---EEecCCCCCchhhHHHHhCCccCCc
Confidence 567889999998754223 45 99999999999 9999999999999999999999874
No 364
>PLN03140 ABC transporter G family member; Provisional
Probab=99.10 E-value=1e-10 Score=94.64 Aligned_cols=40 Identities=28% Similarity=0.339 Sum_probs=36.8
Q ss_pred EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 19 ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 19 ~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.++++ +|+.+++||++ +|+|||||||||||++|+|+..|+
T Consensus 179 ~IL~~------vs~~i~~Ge~~---~llGpnGSGKSTLLk~LaG~l~~~ 218 (1470)
T PLN03140 179 TILKD------ASGIIKPSRMT---LLLGPPSSGKTTLLLALAGKLDPS 218 (1470)
T ss_pred eeccC------CeEEEeCCeEE---EEEcCCCCCHHHHHHHHhCCCCCC
Confidence 46666 99999999999 999999999999999999998875
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.08 E-value=8.4e-11 Score=78.38 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=24.5
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHH
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVL 57 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl 57 (68)
+||++++||++ +|+|+||||||||+
T Consensus 14 vsl~i~~Ge~~---~l~G~sGsGKSTL~ 38 (226)
T cd03270 14 VDVDIPRNKLV---VITGVSGSGKSSLA 38 (226)
T ss_pred ceeecCCCcEE---EEEcCCCCCHHHHH
Confidence 99999999999 99999999999996
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.06 E-value=1e-10 Score=76.88 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=30.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+++++.+| ++ +|+||||||||||+++|+|+..|
T Consensus 16 ~~l~~~~g-~~---~i~G~nGsGKStll~al~~l~~~ 48 (197)
T cd03278 16 TTIPFPPG-LT---AIVGPNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred eeeecCCC-cE---EEECCCCCCHHHHHHHHHHHhcc
Confidence 88999999 88 99999999999999999988644
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.05 E-value=3.5e-10 Score=91.23 Aligned_cols=55 Identities=24% Similarity=0.228 Sum_probs=50.1
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.|+++|++.+|+.. ..++++ +||.|++||.+ ||+|+.|||||||..+|.++..|.
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~------is~~I~p~eKV---GIVGRTGaGKSSL~~aLFRl~e~~ 1193 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKG------ISFTIKPGEKV---GIVGRTGAGKSSLILALFRLVEPA 1193 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcC------ceEEEcCCceE---EEeCCCCCCHHHHHHHHHHhcCcc
Confidence 58999999999875 467777 99999999999 999999999999999999998875
No 368
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.05 E-value=1.4e-10 Score=86.08 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=31.3
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++||++ +|+|||||||||||+ +|+..|++
T Consensus 25 Vsl~i~~GEiv---~L~G~SGsGKSTLLr--~~l~~~~s 58 (504)
T TIGR03238 25 FNKELPSSSLL---FLCGSSGDGKSEILA--ENKRKFSE 58 (504)
T ss_pred CceeecCCCEE---EEECCCCCCHHHHHh--cCCCCCCC
Confidence 99999999999 999999999999999 77777753
No 369
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.05 E-value=2.6e-10 Score=91.79 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=34.2
Q ss_pred EEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 19 ALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 19 ~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.++++ +|+.+++||++ +|+|||||||||||++|+|+.
T Consensus 75 ~iL~~------vs~~i~~Ge~~---aIlG~nGsGKSTLLk~LaG~~ 111 (1394)
T TIGR00956 75 DILKP------MDGLIKPGELT---VVLGRPGSGCSTLLKTIASNT 111 (1394)
T ss_pred eeeeC------CEEEEECCEEE---EEECCCCCCHHHHHHHHhCCC
Confidence 45666 99999999999 999999999999999999986
No 370
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.03 E-value=6.8e-10 Score=83.61 Aligned_cols=53 Identities=23% Similarity=0.371 Sum_probs=44.1
Q ss_pred EEEeceeEEccCc----eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 5 EELSQLSDSMRQA----AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 5 l~~~~v~~~~~~~----~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+++++++.....+ +.++++ ++..+++||+. ||+|||||||||||++|+|....
T Consensus 26 ~~~~~~~~~~~~~~~~~k~iL~~------vsg~~~~Gel~---AimG~SGsGKtTLL~~Lagr~~~ 82 (613)
T KOG0061|consen 26 LSFRNLTLSSKEKSKKTKTILKG------VSGTAKPGELL---AIMGPSGSGKTTLLNALAGRLNG 82 (613)
T ss_pred eEEEEEEEEecCCCCccceeeeC------cEEEEecCeEE---EEECCCCCCHHHHHHHHhccccC
Confidence 5566766665443 467777 99999999999 99999999999999999998764
No 371
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.2e-10 Score=85.72 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=42.9
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
|.+++++..|+. +.++.. .++++.+|..+ ||+|+||+|||||||+|+-
T Consensus 81 i~~~~fdLa~G~-k~LL~~------a~L~L~~GrRY---GLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 81 IHIDNFDLAYGG-KILLNK------ANLTLSRGRRY---GLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeeeeeeeecc-hhhhcC------Cceeeeccccc---ceeCCCCCcHHHHHHHHHh
Confidence 567789999997 567777 99999999999 9999999999999999975
No 372
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.02 E-value=7.7e-10 Score=83.68 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=48.3
Q ss_pred ceEEEeceeEEccC-ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQ-AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~-~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.++++++|+...+. +..++++ +||+|++|+.+ -|.||||||||+|||+++|+-+.
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~------Ls~~V~~g~~L---LItG~sG~GKtSLlRvlggLWp~ 487 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIEN------LSLEVPSGQNL---LITGPSGCGKTSLLRVLGGLWPS 487 (659)
T ss_pred ceEEeeeeeecCCCCCceeeee------eeeEecCCCeE---EEECCCCCchhHHHHHHhccccc
Confidence 47899999998876 5566666 99999999999 99999999999999999999763
No 373
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=5.8e-10 Score=82.14 Aligned_cols=55 Identities=24% Similarity=0.221 Sum_probs=50.3
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+.++++++.|...+.++.+ ++|.+++|+.+ +++||||+||||++++|..++.+++
T Consensus 263 v~F~~V~F~y~~~r~iL~~------isf~i~~g~tv---AiVg~SG~gKsTI~rllfRFyD~~s 317 (497)
T COG5265 263 VAFINVSFAYDPRRPILNG------ISFTIPLGKTV---AIVGESGAGKSTILRLLFRFYDVNS 317 (497)
T ss_pred EEEEEEEeeccccchhhcC------ccccccCccEE---EEEeCCCCcHHHHHHHHHHHhCCcC
Confidence 5788999999887788877 99999999999 9999999999999999999988764
No 374
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.97 E-value=9.5e-10 Score=81.12 Aligned_cols=58 Identities=24% Similarity=0.229 Sum_probs=47.1
Q ss_pred ceEEEeceeEEccCceEEe--------ecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALL--------ADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l--------~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
..++.+++...|.-+..++ +-++ +||++++|+.+ +|+|+||||||||-++|.+++.+.
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~----isl~L~~gqTl---GlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDG----ISLTLRRGQTL---GLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEecc----ceeEecCCCeE---EEEecCCCCcchHHHHHHhhcCcC
Confidence 3689999999985432222 2244 99999999999 999999999999999999998764
No 375
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.95 E-value=1.7e-09 Score=81.85 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=44.6
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
|.++|+-.-.+..+.+... ++|++++|-.+ -|.||||||||+|+|+|+|+-+
T Consensus 482 I~lenIpvItP~~~vvv~~------Ltf~i~~G~hL---LItGPNGCGKSSLfRILggLWP 533 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPK------LTFQIEPGMHL---LITGPNGCGKSSLFRILGGLWP 533 (728)
T ss_pred eEEecCceeccCcceeecc------eeEEecCCceE---EEECCCCccHHHHHHHHhccCc
Confidence 5677877777765666666 99999999999 9999999999999999999864
No 376
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.95 E-value=1.1e-09 Score=71.64 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=31.0
Q ss_pred eeEEecCCC-EEeeeEEEcCCCCCHHHHHHHHh--------CCCCCC
Q 035290 30 SSSSSRRSS-TFLNVVALGNVGAGKSAVLNSLI--------GHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge-~~~~~~liG~sGsGKSTLl~~l~--------Gl~~~~ 67 (68)
.+|++.+|+ ++ +|.|||||||||||++|+ |...|.
T Consensus 20 ~~~~i~~~~~~~---~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~ 63 (200)
T cd03280 20 LDIQLGENKRVL---VITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA 63 (200)
T ss_pred ceEEECCCceEE---EEECCCCCChHHHHHHHHHHHHHHHcCCCccc
Confidence 899999995 67 999999999999999999 766653
No 377
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.95 E-value=2.3e-09 Score=78.82 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=45.9
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.++.+++++.|..+..+++. ++ .+.+|+++ +|+|+||||||||+++|+++..|+
T Consensus 139 ~~~r~~v~~~l~TGi~aID~------L~-~I~~Gqri---~I~G~SGsGKTTLL~~Ia~l~~pd 192 (450)
T PRK06002 139 AMTRARVETGLRTGVRVIDI------FT-PLCAGQRI---GIFAGSGVGKSTLLAMLARADAFD 192 (450)
T ss_pred CeEeecceEEcCCCcEEeee------ec-eecCCcEE---EEECCCCCCHHHHHHHHhCCCCCC
Confidence 56788899999765455444 64 89999999 999999999999999999998876
No 378
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.94 E-value=1.6e-09 Score=79.89 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=46.9
Q ss_pred ceEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++++++|++..|... ..++++ +||++++||++ +++|+||||||-..+.+.+|+.-
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~------isf~i~~GEtl---AlVGESGSGKSvTa~sim~LLp~ 62 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKG------ISFDIEAGETL---ALVGESGSGKSVTALSILGLLPS 62 (534)
T ss_pred cceeeeccEEEEecCCcceEeecc------ceeeecCCCEE---EEEecCCCCccHHHHHHHHhcCC
Confidence 479999999999632 344444 99999999999 99999999999999999988753
No 379
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.92 E-value=1.1e-09 Score=72.24 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=25.8
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++..|+++ +|+||||||||||+|+|+|..
T Consensus 20 i~l~~g~~~---~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 20 IDMEKKNGI---LITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEcCCcEE---EEECCCCCChHHHHHHHHHHH
Confidence 455568999 999999999999999998743
No 380
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.3e-09 Score=77.38 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=33.6
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++|+++...++ +|.|+||||||||+|+|+|+.+||+
T Consensus 17 a~~~~p~~GvT---AlFG~SGsGKTslin~IaGL~rPde 52 (352)
T COG4148 17 ANFTLPARGIT---ALFGPSGSGKTSLINMIAGLTRPDE 52 (352)
T ss_pred EeccCCCCceE---EEecCCCCChhhHHHHHhccCCccc
Confidence 78888887888 9999999999999999999999985
No 381
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.91 E-value=2e-09 Score=72.78 Aligned_cols=50 Identities=26% Similarity=0.366 Sum_probs=40.6
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.++++++++... . +.. +|.++..||++ -+|||||||||||+..++|+..-
T Consensus 2 ~l~qln~v~~~t----R-L~p------lS~qv~aGe~~---HliGPNGaGKSTLLA~lAGm~~~ 51 (248)
T COG4138 2 ILMQLNDVAEST----R-LGP------LSGEVRAGEIL---HLVGPNGAGKSTLLARMAGMTSG 51 (248)
T ss_pred ceeeeccccccc----c-ccc------cccccccceEE---EEECCCCccHHHHHHHHhCCCCC
Confidence 467788887532 2 223 88899999999 99999999999999999999753
No 382
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.90 E-value=1.7e-09 Score=71.27 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=34.0
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEec-CCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSR-RSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~-~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
.|+++|+. .|.+.. . ++|+.. +|+++ +|+||||||||||+++|++
T Consensus 5 ~i~l~nf~-~y~~~~-~---------i~~~~~~~~~~~---~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 5 KLELKNFG-PFREEQ-V---------IDFTGLDNNGLF---LICGPTGAGKSTILDAITY 50 (213)
T ss_pred EEEEECCc-CcCCce-E---------EeCCCCCccCEE---EEECCCCCCHHHHHHHhee
Confidence 46778887 655421 1 555433 58899 9999999999999999985
No 383
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.3e-09 Score=81.65 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=51.0
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++-+.+|++.|.+...++.. ++|-|.--..+ +|+||||.||||||++|.|-+.|+
T Consensus 585 PvLGlH~VtFgy~gqkpLFkk------ldFGiDmdSRi---aIVGPNGVGKSTlLkLL~Gkl~P~ 640 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPLFKK------LDFGIDMDSRI---AIVGPNGVGKSTLLKLLIGKLDPN 640 (807)
T ss_pred CeeecccccccCCCCCchhhc------cccccccccee---EEECCCCccHHHHHHHHhcCCCCC
Confidence 578899999999776788888 88999999999 999999999999999999999886
No 384
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.89 E-value=2.2e-09 Score=71.33 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=31.3
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
|+++|.. .|++. .++++ +++ +++ +|+|||||||||++++|.
T Consensus 6 l~l~nfk-~~~~~-~~l~~------~~~-----~i~---~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 6 LVLENFK-SYAGE-QVIGP------FHK-----SFS---AIVGPNGSGKSNVIDSML 46 (212)
T ss_pred EEEECcc-cCCCC-eeecc------CCC-----CeE---EEECCCCCCHHHHHHHHH
Confidence 4566665 67663 34444 665 788 999999999999999987
No 385
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.86 E-value=9.3e-10 Score=71.31 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=31.8
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+.+.+++|+.+ +|+||+|||||||+++|+++.+|+
T Consensus 18 l~~~v~~g~~i---~I~G~tGSGKTTll~aL~~~i~~~ 52 (186)
T cd01130 18 LWLAVEARKNI---LISGGTGSGKTTLLNALLAFIPPD 52 (186)
T ss_pred HHHHHhCCCEE---EEECCCCCCHHHHHHHHHhhcCCC
Confidence 55678999999 999999999999999999998775
No 386
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.84 E-value=4.9e-09 Score=68.51 Aligned_cols=30 Identities=20% Similarity=0.115 Sum_probs=27.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
.++++.+|+++ +|+|||||||||||++|++
T Consensus 22 ~~~~l~~~~~~---~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 22 NDINLGSGRLL---LITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eeEEEcCCeEE---EEECCCCCccHHHHHHHHH
Confidence 66788899999 9999999999999999983
No 387
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.83 E-value=1.7e-09 Score=71.76 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=22.0
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++++ +|+||||||||||+++|+++
T Consensus 23 ~~~~---~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 23 PKHN---VVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred CCcE---EEECCCCCCHHHHHHHHHHH
Confidence 7898 99999999999999999854
No 388
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=1.6e-08 Score=81.87 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=47.2
Q ss_pred eEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.+++++.++++++. ...+++ ++|++++|+.+ +++|+.|||||+||.+|.|.....
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~d------In~~i~~G~lv---aVvG~vGsGKSSLL~AiLGEm~~~ 574 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKD------INFEIKKGQLV---AVVGPVGSGKSSLLSAILGEMPKL 574 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccc------eeEEecCCCEE---EEECCCCCCHHHHHHHHhcCcccc
Confidence 57889999998752 335666 99999999999 999999999999999999987764
No 389
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.79 E-value=2.9e-09 Score=74.48 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=22.2
Q ss_pred EEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 45 ALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 45 liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+||||||||||+++|+|+++|++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~ 24 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDS 24 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCc
Confidence 589999999999999999999874
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.78 E-value=1.5e-08 Score=75.65 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=30.6
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++..||++ +++||||-|||||.++|||.+.||+
T Consensus 363 ~i~~gEvi---gilGpNgiGKTTFvk~LAG~ikPde 395 (591)
T COG1245 363 EIYDGEVI---GILGPNGIGKTTFVKLLAGVIKPDE 395 (591)
T ss_pred eeecceEE---EEECCCCcchHHHHHHHhccccCCC
Confidence 57788888 9999999999999999999999985
No 391
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.76 E-value=8.6e-09 Score=66.60 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=24.1
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
|+++ +|+||||||||||+++|++...+
T Consensus 2 g~~i---~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLI---WLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEE---EEECCCCCCHHHHHHHHhccCCC
Confidence 5677 99999999999999999998654
No 392
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.76 E-value=2.2e-08 Score=73.13 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=45.1
Q ss_pred eEEEeceeEEccCceEEee--cCCCc---eeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 4 IEELSQLSDSMRQAAALLA--DEDVD---ENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~--~~~~~---~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+++++++..|++.+..|. .+++. -++.+.+.+|+.+ +|+||+|+|||||++.|+...
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~---~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRG---LIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEE---EEECCCCCChhHHHHHHHHhh
Confidence 4789999999987555564 11000 0199999999999 999999999999999988753
No 393
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.71 E-value=2.2e-08 Score=66.07 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=27.6
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHH----hCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSL----IGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l----~Gl~~~~ 67 (68)
.++++.+| ++ +|+||||||||||+++| .|...|+
T Consensus 16 ~~l~~~~g-~~---~i~G~NGsGKTTLl~ai~~~l~G~~~~~ 53 (204)
T cd03240 16 SEIEFFSP-LT---LIVGQNGAGKTTIIEALKYALTGELPPN 53 (204)
T ss_pred eEEecCCC-eE---EEECCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 45566677 77 99999999999999998 4877654
No 394
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.71 E-value=1.9e-08 Score=66.75 Aligned_cols=31 Identities=19% Similarity=0.091 Sum_probs=29.2
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++++.+|+++ +|.||||+||||++++++++
T Consensus 22 ~~~~~~~~~~~---~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 22 IYLTRGSSRFH---IITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred eEEeeCCCcEE---EEECCCCCCHHHHHHHHHHH
Confidence 99999999999 99999999999999999843
No 395
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.70 E-value=1.3e-08 Score=66.02 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=25.6
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+|+++ +++|+|||||||++++|++++.+
T Consensus 2 ~ge~i---~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESY---ILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEE---EEECCCCCCHHHHHHHHHHhcCC
Confidence 58898 99999999999999999998765
No 396
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.69 E-value=5.5e-08 Score=69.08 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=32.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+ +.+.+|+++ +|+|+||+|||||+++|++...|+
T Consensus 63 l-~~i~~Gqri---~I~G~sG~GKTtLl~~Ia~~~~~~ 96 (326)
T cd01136 63 L-LTVGKGQRL---GIFAGSGVGKSTLLGMIARGTTAD 96 (326)
T ss_pred e-eEEcCCcEE---EEECCCCCChHHHHHHHhCCCCCC
Confidence 7 999999999 999999999999999999998775
No 397
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.68 E-value=2.8e-08 Score=72.83 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=43.3
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++.+.++..|..+..+++. + |.+.+|+.+ +|+|+||+|||||+++|+++..++
T Consensus 130 ~~r~~v~~~l~tGi~aID~------l-l~i~~Gqri---gI~G~sG~GKSTLL~~I~~~~~~d 182 (433)
T PRK07594 130 MVRQPITQPLMTGIRAIDS------V-ATCGEGQRV---GIFSAPGVGKSTLLAMLCNAPDAD 182 (433)
T ss_pred eeccCHhheeCCCceeeee------e-eecCCCCEE---EEECCCCCCccHHHHHhcCCCCCC
Confidence 4556666666544445555 8 999999999 999999999999999999998876
No 398
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.68 E-value=2.5e-08 Score=73.12 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=32.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+ |.+.+|+++ +|+|+||+|||||+++|+|+..++
T Consensus 149 l-l~I~~GQ~i---gI~G~sGaGKSTLl~~I~g~~~~d 182 (434)
T PRK07196 149 L-LTIGKGQRV---GLMAGSGVGKSVLLGMITRYTQAD 182 (434)
T ss_pred e-EeEecceEE---EEECCCCCCccHHHHHHhcccCCC
Confidence 8 999999999 999999999999999999998765
No 399
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.67 E-value=2.1e-08 Score=74.50 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=30.6
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++|.+++|+++ +++|+||+||||+|+||.|..
T Consensus 402 vNL~ikpGdvv---aVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 402 LNLEIKPGDVV---AVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred eeeEecCCCeE---EEEecCCCCcchHHHHHHHHh
Confidence 99999999999 999999999999999999863
No 400
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.66 E-value=1.2e-08 Score=66.89 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=25.2
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
++|+++ +|+|+||||||||++.|+++..
T Consensus 4 ~~g~vi---~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIII---GIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEE---EEECCCCCCHHHHHHHHHHHhc
Confidence 578888 9999999999999999998764
No 401
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.63 E-value=2.3e-08 Score=67.23 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.6
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
..+. +|+||||||||||+++|++++.+
T Consensus 25 ~~~~---~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 25 PQFN---AITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCeE---EEECCCCCCHHHHHHHHHHHhcc
Confidence 4566 99999999999999999988654
No 402
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.62 E-value=3.6e-08 Score=63.79 Aligned_cols=28 Identities=36% Similarity=0.517 Sum_probs=25.8
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
++|+++ +|+||||||||||+++|++...
T Consensus 3 ~~g~~i---~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLI---VLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEE---EEECCCCCCHHHHHHHHHhhCc
Confidence 589999 9999999999999999999864
No 403
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.61 E-value=5.6e-08 Score=65.37 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.4
Q ss_pred EEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 39 TFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 39 ~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+. +|+||||||||||+.+|+++..+
T Consensus 24 ~~---~i~G~NGsGKStll~ai~~~l~~ 48 (247)
T cd03275 24 FT---CIIGPNGSGKSNLMDAISFVLGE 48 (247)
T ss_pred eE---EEECCCCCCHHHHHHHHHHHhCC
Confidence 77 99999999999999999987654
No 404
>PRK08149 ATP synthase SpaL; Validated
Probab=98.59 E-value=1.1e-07 Score=69.77 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=32.3
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+ +.+.+|+++ +|+|+||+|||||+++|+++..++
T Consensus 145 l-l~i~~Gq~i---~I~G~sG~GKTTLl~~i~~~~~~d 178 (428)
T PRK08149 145 L-LTCGVGQRM---GIFASAGCGKTSLMNMLIEHSEAD 178 (428)
T ss_pred e-eeEecCCEE---EEECCCCCChhHHHHHHhcCCCCC
Confidence 8 999999999 999999999999999999988765
No 405
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.58 E-value=1.3e-07 Score=68.86 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=38.7
Q ss_pred ceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 9 QLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 9 ~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.++..|..+..+++. + |.+.+|+++ +|+|+||+|||||+++|+++..|+
T Consensus 116 ~~~~~~~tGi~~id~------l-~~i~~Gq~~---~I~G~sG~GKTtLl~~I~~~~~~~ 164 (411)
T TIGR03496 116 PIDEPLDVGVRAING------L-LTVGRGQRM---GIFAGSGVGKSTLLGMMARYTEAD 164 (411)
T ss_pred CcceEeeeeEEeecc------e-EEEecCcEE---EEECCCCCCHHHHHHHHhcCCCCC
Confidence 345555433334333 6 999999999 999999999999999999998775
No 406
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.57 E-value=1.2e-07 Score=53.20 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=24.2
Q ss_pred eeEEecC-CCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 30 SSSSSRR-SSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 30 vs~~i~~-ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
-++++.+ |+.+ .|.|+|||||||++.++.=+
T Consensus 15 ~~~~~~~~g~~t---li~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 15 ETIDFDPRGDVT---LITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred eEEeecCCCcEE---EEECCCCCCHHHHHHHHHHH
Confidence 5566665 4577 99999999999999877533
No 407
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.55 E-value=6.4e-08 Score=72.06 Aligned_cols=51 Identities=20% Similarity=0.228 Sum_probs=42.2
Q ss_pred eceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 8 SQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 8 ~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++.|++. .+++. +++.+..|+.+ .++||+|+|||||++.|.|+++|.+
T Consensus 188 ~d~~~v~Gq~-~~~~a------l~laa~~G~~l---lliG~~GsGKTtLak~L~gllpp~~ 238 (506)
T PRK09862 188 HDLSDVIGQE-QGKRG------LEITAAGGHNL---LLIGPPGTGKTMLASRINGLLPDLS 238 (506)
T ss_pred cCeEEEECcH-HHHhh------hheeccCCcEE---EEECCCCCcHHHHHHHHhccCCCCC
Confidence 4677777663 34444 89999999999 9999999999999999999998763
No 408
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.54 E-value=1.1e-07 Score=69.26 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=32.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+ |.+.+|+.+ +|+|+||+|||||+++|++...|+
T Consensus 139 l-~~i~~Gq~~---~I~G~sG~GKStLl~~I~~~~~~~ 172 (422)
T TIGR02546 139 L-LTCGEGQRI---GIFAGAGVGKSTLLGMIARGASAD 172 (422)
T ss_pred h-ccccCCCEE---EEECCCCCChHHHHHHHhCCCCCC
Confidence 8 999999999 999999999999999999998775
No 409
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.52 E-value=1e-07 Score=65.65 Aligned_cols=28 Identities=21% Similarity=0.238 Sum_probs=26.6
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHH
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSL 60 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l 60 (68)
++++++.|+.+ +|.|.||||||||++.+
T Consensus 14 v~~~ip~g~~~---~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 14 IDVDIPLGVLT---CVTGVSGSGKSSLINDT 41 (261)
T ss_pred ceeeccCCcEE---EEECCCCCchHHHHHHH
Confidence 99999999999 99999999999999855
No 410
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.50 E-value=2.2e-07 Score=68.55 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=32.0
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+ |.+.+|+.+ +|+|+||+|||||+++|+++..++
T Consensus 162 l-~~I~~Gqri---gI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 162 L-LTVGRGQRL---GLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred e-EEecCCcEE---EEECCCCCCHHHHHHHHhCCCCCC
Confidence 7 999999999 999999999999999999987764
No 411
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.50 E-value=1e-07 Score=60.68 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
|+++ +|+|||||||||+++.|+.++.
T Consensus 1 ~~~~---~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLI---YVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEE---EEECCCCCCHHHHHHHHHHHcC
Confidence 4566 9999999999999999988653
No 412
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.50 E-value=1.3e-07 Score=59.94 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
|+++ +|+||||||||||++.|++..
T Consensus 1 g~ii---~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLI---VISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEE---EEECCCCCCHHHHHHHHHccC
Confidence 5677 999999999999999999865
No 413
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.50 E-value=2e-07 Score=62.84 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=29.2
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+++.+.+|+++ +|.||||+||||+++++++
T Consensus 24 i~~~~~~g~~~---~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 24 IHLSAEGGYCQ---IITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEecCCcEE---EEECCCCCCHHHHHHHHHH
Confidence 99999999999 9999999999999999987
No 414
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.49 E-value=6.7e-08 Score=67.26 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=30.5
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++.++.|+.+ +++|++|||||||+++|.++..++
T Consensus 137 l~~~v~~~~~i---li~G~tGsGKTTll~al~~~~~~~ 171 (308)
T TIGR02788 137 LRLAIASRKNI---IISGGTGSGKTTFLKSLVDEIPKD 171 (308)
T ss_pred HHHHhhCCCEE---EEECCCCCCHHHHHHHHHccCCcc
Confidence 34567789998 999999999999999999998764
No 415
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.49 E-value=1.8e-07 Score=68.64 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=32.1
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+ |.+.+|+.+ +|+|+||+|||||+++|++...++
T Consensus 157 l-~~i~~Gq~~---~I~G~sG~GKStLl~~I~~~~~~~ 190 (440)
T TIGR01026 157 L-LTVGKGQRI---GIFAGSGVGKSTLLGMIARNTEAD 190 (440)
T ss_pred c-cccCCCcEE---EEECCCCCCHHHHHHHHhCCCCCC
Confidence 7 999999999 999999999999999999998765
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.49 E-value=1.4e-07 Score=65.31 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=24.7
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.+++++||+|||||||+++|+|+..|+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~ 138 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG 138 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC
Confidence 466999999999999999999999875
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.47 E-value=1.5e-07 Score=62.77 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=26.2
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
++++..+ +++ +|+||||+||||+|+++++
T Consensus 24 ~~l~~~~-~~~---~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 24 TELDPER-QIL---LITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred EEecCCc-eEE---EEECCCCCChHHHHHHHHH
Confidence 8888776 888 9999999999999999975
No 418
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.47 E-value=2.7e-07 Score=67.97 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=31.8
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
..+.+.+|+++ +|+|+||+|||||+++|++...++
T Consensus 155 ~ll~i~~Gqri---gI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 155 AMLTVGKGQRM---GLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred ceEEEcCCCEE---EEECCCCCChhHHHHHhccCCCCC
Confidence 34999999999 999999999999999999987664
No 419
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.47 E-value=9.2e-08 Score=63.69 Aligned_cols=30 Identities=27% Similarity=0.196 Sum_probs=25.6
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.+..++ +|.|+||||||||++.|++++.+.
T Consensus 31 ~~~~ii---gi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIV---GIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEE---EEECCCCCCHHHHHHHHHHHhhhc
Confidence 445677 999999999999999999987653
No 420
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.45 E-value=2.2e-07 Score=68.09 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=32.5
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+ |.+.+|+++ +|+|+||+|||||+++|+++..|+
T Consensus 152 l-~~i~~Gq~i---~I~G~sG~GKStLl~~I~~~~~~~ 185 (438)
T PRK07721 152 L-LTVGKGQRV---GIFAGSGVGKSTLMGMIARNTSAD 185 (438)
T ss_pred e-eeecCCcEE---EEECCCCCCHHHHHHHHhcccCCC
Confidence 8 999999999 999999999999999999998875
No 421
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.44 E-value=4.3e-07 Score=60.84 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=27.6
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
++++..+++++ +|.||||+||||++++++
T Consensus 23 ~~~~~~~~~~~---~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 23 VTLTRGKSRFL---IITGPNMGGKSTYIRQIG 51 (222)
T ss_pred EEEeecCCeEE---EEECCCCCChHHHHHHHH
Confidence 99999999999 999999999999999975
No 422
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.44 E-value=2.7e-07 Score=67.44 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=33.2
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.+|.+.+|+.+ +|+|+||+|||||+++|+++..|+
T Consensus 133 ~~~~i~~Gq~i---~I~G~sG~GKTtLl~~I~~~~~~~ 167 (418)
T TIGR03498 133 TFLPLCRGQRL---GIFAGSGVGKSTLLSMLARNTDAD 167 (418)
T ss_pred eeccccCCcEE---EEECCCCCChHHHHHHHhCCCCCC
Confidence 78999999999 999999999999999999998875
No 423
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=2.7e-07 Score=72.66 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=25.5
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHH
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLN 58 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~ 58 (68)
++|+|++|+++ +|.|+||||||||++
T Consensus 626 vsl~Ip~Geiv---~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 626 ITVSIPLGLFT---CITGVSGSGKSTLIN 651 (924)
T ss_pred eEEEEeCCCEE---EEECCCCCCHHHHHH
Confidence 99999999999 999999999999997
No 424
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.43 E-value=4.2e-07 Score=66.86 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=32.3
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+ +.+.+|+++ +|+|+||+|||||+++|++...++
T Consensus 157 l-~~i~~Gq~~---~I~G~sG~GKTtLl~~ia~~~~~d 190 (441)
T PRK09099 157 L-MTLGEGQRM---GIFAPAGVGKSTLMGMFARGTQCD 190 (441)
T ss_pred e-eeecCCCEE---EEECCCCCCHHHHHHHHhCCCCCC
Confidence 8 999999999 999999999999999999998775
No 425
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.43 E-value=3.7e-07 Score=67.01 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=40.5
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++.+.++..|..+..+++ ..|.+.+|+.+ +|+|++|+|||||+++|++...|+
T Consensus 131 ~~r~~i~~~l~TGiraID-------~ll~I~~Gqri---~I~G~sG~GKTtLl~~Ia~~~~~~ 183 (432)
T PRK06793 131 FEREEITDVFETGIKSID-------SMLTIGIGQKI---GIFAGSGVGKSTLLGMIAKNAKAD 183 (432)
T ss_pred hheechhhccCCCCEEEe-------ccceecCCcEE---EEECCCCCChHHHHHHHhccCCCC
Confidence 344455656654333332 33999999999 999999999999999999998775
No 426
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.42 E-value=2.8e-07 Score=59.95 Aligned_cols=26 Identities=42% Similarity=0.590 Sum_probs=22.8
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++++++|++|+|||||+++|.|...+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~ 27 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHE 27 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCC
Confidence 36799999999999999999997654
No 427
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.42 E-value=3.1e-07 Score=57.92 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=22.1
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
.++++.+| +. +|.||||+||||++.+|.
T Consensus 13 ~~i~f~~g-~~---vi~G~Ng~GKStil~ai~ 40 (202)
T PF13476_consen 13 LEIDFSPG-LN---VIYGPNGSGKSTILEAIR 40 (202)
T ss_dssp EEEE--SE-EE---EEEESTTSSHHHHHHHHH
T ss_pred eEEEcCCC-cE---EEECCCCCCHHHHHHHHH
Confidence 66677676 66 899999999999998875
No 428
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.41 E-value=2.7e-07 Score=74.73 Aligned_cols=50 Identities=26% Similarity=0.338 Sum_probs=39.7
Q ss_pred EEEeceeEEc---cCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 5 EELSQLSDSM---RQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 5 l~~~~v~~~~---~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.-..|+.+.. ++++.+|.+ ++=-++||-.. ||+|+|||||||||++|||-
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~------V~G~~kPG~LT---ALMG~SGAGKTTLLdvLA~R 840 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNN------VSGAFKPGVLT---ALMGESGAGKTTLLDVLAGR 840 (1391)
T ss_pred EEEEeCCccccccccceEhhhc------CceEecCCcee---ehhcCCCCchHHHHHHHhcC
Confidence 3445555444 233567777 88899999999 99999999999999999986
No 429
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.41 E-value=4.4e-07 Score=66.14 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=32.1
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+ +.+.+|+++ +|+|++|+|||||+++|++...++
T Consensus 131 l-~~i~~Gqri---~I~G~sG~GKTtLl~~i~~~~~~~ 164 (413)
T TIGR03497 131 L-LTIGKGQRV---GIFAGSGVGKSTLLGMIARNAKAD 164 (413)
T ss_pred E-EEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCC
Confidence 7 999999999 999999999999999999988765
No 430
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.40 E-value=5.3e-07 Score=66.32 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=32.1
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+ +.+.+|+.+ +|+|+||+|||||+++|++...++
T Consensus 156 l-~~i~~Gq~~---~I~G~sG~GKStLl~~Ia~~~~~d 189 (439)
T PRK06936 156 L-LTCGEGQRM---GIFAAAGGGKSTLLASLIRSAEVD 189 (439)
T ss_pred e-EEecCCCEE---EEECCCCCChHHHHHHHhcCCCCC
Confidence 8 999999999 999999999999999999988765
No 431
>PRK05922 type III secretion system ATPase; Validated
Probab=98.38 E-value=8.4e-07 Score=65.19 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=32.0
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.-+.+.+|+.+ +|+|+||+|||||+++|++...++
T Consensus 150 ~ll~I~~Gqri---gI~G~nG~GKSTLL~~Ia~~~~~d 184 (434)
T PRK05922 150 AFLTLGKGQRI---GVFSEPGSGKSSLLSTIAKGSKST 184 (434)
T ss_pred ceEEEcCCcEE---EEECCCCCChHHHHHHHhccCCCC
Confidence 34899999999 999999999999999999987765
No 432
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.37 E-value=1.9e-07 Score=60.39 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.1
Q ss_pred eEEEcCCCCCHHHHHHHHhCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++|.|+||||||||.++|+++.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3999999999999999998875
No 433
>PRK15494 era GTPase Era; Provisional
Probab=98.36 E-value=3.5e-07 Score=64.57 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=41.3
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCC-------EEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSS-------TFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge-------~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++..+++++|+.....+.. ++++++.|+ .+ +++|++++|||||++.+.|-.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~k~~kV---~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 19 TEALAAAVREDASTGSTSK------LPLEVKFGKMSNQKTVSV---CIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred cccccccccCCCCcccccC------CccccccccccccceeEE---EEEcCCCCCHHHHHHHHhCCc
Confidence 5677888888754455555 888899999 66 999999999999999998753
No 434
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.36 E-value=5.7e-07 Score=59.15 Aligned_cols=29 Identities=31% Similarity=0.318 Sum_probs=24.3
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+++++.+| +. +|+||||+|||||+.+|.-
T Consensus 15 ~~l~f~~g-l~---~i~G~NGsGKStll~ai~~ 43 (198)
T cd03276 15 LQIEFGPR-VN---FIVGNNGSGKSAILTALTI 43 (198)
T ss_pred eEEecCCC-eE---EEECCCCCcHHHHHHHHHH
Confidence 67777776 55 8999999999999998863
No 435
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.35 E-value=7.6e-07 Score=62.00 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=44.5
Q ss_pred ceEEEeceeEEccCceEEe-ecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQAAALL-ADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l-~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+.+.++|++..+...+..+ ..+. +|+++.+||+- +++|+||||||-..++|.|..+
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~----v~ltlnEGEi~---GLVGESGSGKSLiAK~Ic~v~k 58 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDR----VSMTLNEGEIR---GLVGESGSGKSLIAKAICGVNK 58 (330)
T ss_pred CcccccceEEEEecCCCceEeeee----eeeeeccceee---eeeccCCCchhHHHHHHhcccc
Confidence 4678899988885432211 1144 99999999999 9999999999999999998754
No 436
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.35 E-value=7.5e-07 Score=73.87 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=25.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHH
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLN 58 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~ 58 (68)
++|++++|+++ +|.|+||||||||++
T Consensus 614 isl~Ip~Geiv---~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 614 LTISLPLGRLT---VVTGVSGSGKSSLIN 639 (1809)
T ss_pred eEEEEcCCcEE---EEEcCCCCCHHHHHH
Confidence 99999999999 999999999999999
No 437
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.34 E-value=1.9e-07 Score=62.53 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.8
Q ss_pred eEEEcCCCCCHHHHHHHHhCCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+||.|+||||||||++.|++++.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 39999999999999999998764
No 438
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.34 E-value=3.3e-07 Score=63.26 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.2
Q ss_pred eEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++|.|+||||||||+++|++++.+.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~ 26 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSD 26 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCC
Confidence 3999999999999999999987653
No 439
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.34 E-value=5.7e-07 Score=55.95 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++|++|+|||||++.+.+..
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~ 38 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASED 38 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCC
Confidence 35999999999999999999963
No 440
>PRK06820 type III secretion system ATPase; Validated
Probab=98.34 E-value=8.9e-07 Score=65.13 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=31.9
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+ +.+.+|+.+ +|+|+||+|||||+++|++...++
T Consensus 157 l-~~i~~Gqri---~I~G~sG~GKStLl~~I~~~~~~d 190 (440)
T PRK06820 157 I-LSCGEGQRI---GIFAAAGVGKSTLLGMLCADSAAD 190 (440)
T ss_pred e-EEecCCCEE---EEECCCCCChHHHHHHHhccCCCC
Confidence 7 999999999 999999999999999999987665
No 441
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.34 E-value=4.4e-07 Score=67.04 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=32.3
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.-|.+.+|+++ +|+|+||+|||||+++|+++..|+
T Consensus 168 ~ll~I~~Gqri---~I~G~sG~GKTTLL~~Ia~~~~~d 202 (455)
T PRK07960 168 ALLTVGRGQRM---GLFAGSGVGKSVLLGMMARYTQAD 202 (455)
T ss_pred ecccccCCcEE---EEECCCCCCccHHHHHHhCCCCCC
Confidence 34899999999 999999999999999999998875
No 442
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.32 E-value=3.6e-07 Score=59.66 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=23.2
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.++.++ +|.|+||||||||.+.|++.+
T Consensus 4 ~~~~iI---~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIII---GIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEE---EEECCCCCCHHHHHHHHHHHh
Confidence 355677 999999999999999998765
No 443
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.31 E-value=9.4e-07 Score=51.26 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.6
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+..+ .|+||+|+||||+++.|+.....
T Consensus 2 ~~~~---~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVI---LIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEE---EEECCCCCcHHHHHHHHHhccCC
Confidence 4455 99999999999999999887643
No 444
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.30 E-value=5.7e-07 Score=66.07 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=31.0
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+ +.+.+|+++ +|+|+||+|||||+++|++...++
T Consensus 151 l-~~i~~Gq~~---~i~G~sG~GKStLl~~i~~~~~~~ 184 (434)
T PRK08472 151 L-LTCGKGQKL---GIFAGSGVGKSTLMGMIVKGCLAP 184 (434)
T ss_pred c-ceecCCCEE---EEECCCCCCHHHHHHHHhhccCCC
Confidence 7 999999999 999999999999999999876543
No 445
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.29 E-value=9.3e-07 Score=58.84 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=23.6
Q ss_pred eeEEecCC--CEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 30 SSSSSRRS--STFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 30 vs~~i~~g--e~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
.++.+.++ .++ +|.||||+||||||+.++
T Consensus 20 nd~~l~~~~~~~~---~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 20 NDTEIGGGGPSIM---VITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEecCCCceEE---EEECCCCCChHHHHHHHH
Confidence 34555555 567 999999999999999987
No 446
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.29 E-value=8.6e-07 Score=53.25 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=20.1
Q ss_pred eEEEcCCCCCHHHHHHHHhCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++|++|+|||||++.+.+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~ 23 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ 23 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC
Confidence 4899999999999999999873
No 447
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.28 E-value=1.1e-06 Score=69.39 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=26.9
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHH
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSL 60 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l 60 (68)
++|++++|+++ +|.|+||||||||++.+
T Consensus 628 isl~Ip~Geiv---gVtGvsGSGKSTLl~~~ 655 (943)
T PRK00349 628 VDVEIPLGKFT---CVTGVSGSGKSTLINET 655 (943)
T ss_pred eEEEEeCCCEE---EEEcCCCCCHHHHHHHH
Confidence 99999999999 99999999999999875
No 448
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.27 E-value=7.9e-07 Score=56.30 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.6
Q ss_pred EEEcCCCCCHHHHHHHHh---CCCCC
Q 035290 44 VALGNVGAGKSAVLNSLI---GHPVL 66 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~---Gl~~~ 66 (68)
+++|++||||||+++.|+ |+..+
T Consensus 7 ~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 7 FIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 999999999999999998 76544
No 449
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.26 E-value=2.3e-06 Score=63.92 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=32.6
Q ss_pred eEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 11 SDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
...+++ ..++++ +.+.. ++.++ +|.|||||||||+.+.|+
T Consensus 266 A~~~g~-~RLIDN------~~~~~-~~~ii---~i~G~sgsGKst~a~~la 305 (512)
T PRK13477 266 AVRCGS-TRLIDN------VFLMK-RQPII---AIDGPAGAGKSTVTRAVA 305 (512)
T ss_pred EEEeCC-eEEEee------eEecc-CCcEE---EEECCCCCCHHHHHHHHH
Confidence 444554 566666 88877 77888 999999999999999998
No 450
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.26 E-value=4.9e-07 Score=63.31 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.9
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.++ ||.|+||||||||+++|.++..
T Consensus 63 ~II---GIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 63 YII---SIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEE---EEECCCCCCHHHHHHHHHHHHh
Confidence 456 9999999999999999988764
No 451
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.26 E-value=1.4e-06 Score=55.36 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.0
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
.++.+.++.+. +|+|||||||||+++.+.
T Consensus 14 ~~i~~~~~~~~---~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 14 NDVTFGEGSLT---IITGPNGSGKSTILDAIG 42 (162)
T ss_pred cEEecCCCCEE---EEECCCCCCHHHHHHHHH
Confidence 45556666688 999999999999999974
No 452
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=7.6e-07 Score=65.12 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=24.4
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+.+|+++ +++||||+||||+++.|++.
T Consensus 188 ~~~g~vi---~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 188 IEQGGVY---ALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cCCCcEE---EEECCCCCCHHHHHHHHHHH
Confidence 4789999 99999999999999988874
No 453
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.24 E-value=2e-06 Score=64.51 Aligned_cols=48 Identities=23% Similarity=0.202 Sum_probs=37.0
Q ss_pred ceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 9 QLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 9 ~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++..+|+.. ..++... ..++|.++ +|+|+||-||||.+++|+|.+.|+
T Consensus 79 e~vHRYg~NgFkL~~LP--------~pr~G~V~---GilG~NGiGKsTalkILaGel~PN 127 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP--------TPRPGKVV---GILGPNGIGKSTALKILAGELKPN 127 (591)
T ss_pred cceeeccCCceEEecCC--------CCCCCcEE---EEEcCCCccHHHHHHHHhCccccC
Confidence 467778753 2232220 36789999 999999999999999999999986
No 454
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.23 E-value=9.1e-07 Score=53.52 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=18.1
Q ss_pred eEEEcCCCCCHHHHHHHHh
Q 035290 43 VVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~ 61 (68)
|+++|++|+|||||++.|.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 4899999999999999999
No 455
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.22 E-value=1.2e-06 Score=52.15 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=19.7
Q ss_pred eEEEcCCCCCHHHHHHHHhCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl 63 (68)
|+++|+.|+|||||++.|.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 599999999999999999984
No 456
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.22 E-value=1.2e-06 Score=54.70 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.2
Q ss_pred EEEcCCCCCHHHHHHHHhCCCC
Q 035290 44 VALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+|+||+|||||||++.|+....
T Consensus 3 ~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 3 VLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEECCCCCCHHHHHHHHHhcCC
Confidence 8999999999999999998754
No 457
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=98.22 E-value=1.9e-06 Score=63.51 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=32.6
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.-|.+.+|+.+ +|+|+||+|||||+++|++...|+
T Consensus 151 ~l~~i~~Gqri---~I~G~sG~GKTtLL~~I~~~~~~d 185 (442)
T PRK08927 151 TFLTCCRGQRM---GIFAGSGVGKSVLLSMLARNADAD 185 (442)
T ss_pred eeeEEcCCCEE---EEECCCCCCHHHHHHHHHhccCCC
Confidence 66899999999 999999999999999999988775
No 458
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.22 E-value=1.5e-06 Score=56.67 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.3
Q ss_pred eeEEEcCCCCCHHHHH-HHHhCCCCC
Q 035290 42 NVVALGNVGAGKSAVL-NSLIGHPVL 66 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl-~~l~Gl~~~ 66 (68)
+++++|++|||||||+ +++.|...+
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~ 36 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEK 36 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 4699999999999999 688887643
No 459
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=1.7e-06 Score=65.33 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=39.8
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
|.+++.+.+... ..++.+ .++.|..|..+ +++||||-||||||+.|+-
T Consensus 265 IKiEnF~ISA~G-k~LFvn------A~L~Iv~GRRY---GLVGPNG~GKTTLLkHIa~ 312 (807)
T KOG0066|consen 265 IKIENFDISAQG-KLLFVN------ASLTIVYGRRY---GLVGPNGMGKTTLLKHIAA 312 (807)
T ss_pred ceeeeeeeeccc-ceeeec------cceEEEeccee---cccCCCCCchHHHHHHHHh
Confidence 566777666544 456666 99999999999 9999999999999998874
No 460
>PLN02796 D-glycerate 3-kinase
Probab=98.20 E-value=9.8e-07 Score=63.35 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=27.5
Q ss_pred eeEEe---cCCCE-----EeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 30 SSSSS---RRSST-----FLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 30 vs~~i---~~ge~-----~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+++.+ ++|+. + +|+|++|||||||++.|.+++.+
T Consensus 85 l~~~~~~~~~G~~~~pliI---GI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 85 LEAHRSKFKDGDEIPPLVI---GISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred HHHHHhhhccCCCCCCEEE---EEECCCCCcHHHHHHHHHHHhcc
Confidence 55554 45665 6 99999999999999999998765
No 461
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.19 E-value=1.8e-06 Score=71.63 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=32.4
Q ss_pred eceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHH
Q 035290 8 SQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSL 60 (68)
Q Consensus 8 ~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l 60 (68)
.++...+... ..+++ ++|++++|+++ +|+|+||||||||+..+
T Consensus 939 ~~i~i~~~~~-~~lk~------isl~i~~gei~---~itG~nGsGKStL~~~~ 981 (1809)
T PRK00635 939 ADITIKNAYQ-HNLKH------IDLSLPRNALT---AVTGPSASGKHSLVFDI 981 (1809)
T ss_pred ceEEEecccc-ccccc------eeEEecCCcEE---EEECCCCCChhHHHHHH
Confidence 4455554432 23455 99999999999 99999999999976544
No 462
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.19 E-value=1.5e-06 Score=51.79 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=18.1
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|.|++||||||+.+.|+-
T Consensus 2 I~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 38999999999999999874
No 463
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.19 E-value=1.3e-06 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.6
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+|+++|++|+|||||++.|.+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~ 24 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK 24 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC
Confidence 56999999999999999998754
No 464
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.19 E-value=3.9e-06 Score=63.45 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=31.9
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCC-EEeeeEEEcCCCCCHHHHHHHH
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSS-TFLNVVALGNVGAGKSAVLNSL 60 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge-~~~~~~liG~sGsGKSTLl~~l 60 (68)
.|.++|+...++. +. ++|...+++ ++ +|.||||+|||||++++
T Consensus 5 ~l~l~nf~~~~~~-------~~----~~~~~~~~~~~~---~i~G~Ng~GKttll~ai 48 (650)
T TIGR03185 5 QLTLENFGPYRGR-------QT----FDLSPSSPKPII---LIGGLNGAGKTTLLDAI 48 (650)
T ss_pred EEEEeceEEEcCC-------ce----eeeecCCCCeEE---EEECCCCCCHHHHHHHH
Confidence 3567777654443 22 677777765 66 89999999999999886
No 465
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.19 E-value=4.1e-06 Score=66.42 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=32.8
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEe---cCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSS---RRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i---~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
.|.++|+....+. . . |+|+. ..+.++ +|+|||||||||+|.+|+
T Consensus 5 ~l~~~nf~s~~~~--~-----~----idf~~~~l~~~~l~---~I~G~tGaGKStildai~ 51 (1047)
T PRK10246 5 SLRLKNLNSLKGE--W-----K----IDFTAEPFASNGLF---AITGPTGAGKTTLLDAIC 51 (1047)
T ss_pred EEEeecceeEcCC--c-----e----EEEeeccCCCCCEE---EEECCCCCCHHHHHHHHH
Confidence 4566777644333 1 2 78874 458899 999999999999998887
No 466
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.18 E-value=2.5e-06 Score=50.51 Aligned_cols=25 Identities=36% Similarity=0.729 Sum_probs=21.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.|++++|+.|+|||||++.+.+-..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~ 26 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF 26 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3679999999999999999987663
No 467
>PRK00098 GTPase RsgA; Reviewed
Probab=98.18 E-value=2.2e-06 Score=59.57 Aligned_cols=30 Identities=33% Similarity=0.367 Sum_probs=26.2
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
-+|.++ +++|+||+|||||++.|.|...+.
T Consensus 162 l~gk~~---~~~G~sgvGKStlin~l~~~~~~~ 191 (298)
T PRK00098 162 LAGKVT---VLAGQSGVGKSTLLNALAPDLELK 191 (298)
T ss_pred ccCceE---EEECCCCCCHHHHHHHHhCCcCCC
Confidence 358888 999999999999999999987653
No 468
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.17 E-value=1.6e-06 Score=57.22 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.7
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+++|+|++|||||||++.+.+...+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCc
Confidence 4699999999999999999887554
No 469
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.17 E-value=2.3e-06 Score=54.89 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=21.9
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++.++|++|||||||++.|.|....
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~ 27 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR 27 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4599999999999999999997643
No 470
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.16 E-value=1.2e-06 Score=65.09 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=28.1
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.++.+.+|+++ +++||||+||||++..|++..
T Consensus 249 ~~~~~~~g~Vi---~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 249 EDALLDRGGVF---ALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred ccccccCCcEE---EEECCCCccHHHHHHHHHHHH
Confidence 55567889999 999999999999999999765
No 471
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.16 E-value=2e-06 Score=59.44 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=25.9
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.+. ++++ +++|+||+|||||++.|.|...++
T Consensus 158 ~L~-~k~~---~~~G~sg~GKSTlin~l~~~~~~~ 188 (287)
T cd01854 158 YLK-GKTS---VLVGQSGVGKSTLINALLPDLDLA 188 (287)
T ss_pred hhc-cceE---EEECCCCCCHHHHHHHHhchhhcc
Confidence 344 4777 999999999999999999987653
No 472
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.15 E-value=1.6e-06 Score=67.16 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=27.8
Q ss_pred eeEEecCC-CEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 30 SSSSSRRS-STFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 30 vs~~i~~g-e~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++++.++ +.+ +|.||||+||||||++++|.
T Consensus 314 ~di~l~~~~~~l---iItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 314 FTLNLKFEKRVL---AITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceeEeCCCceEE---EEECCCCCCchHHHHHHHHH
Confidence 67888877 787 99999999999999999876
No 473
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.15 E-value=2.5e-06 Score=55.57 Aligned_cols=26 Identities=38% Similarity=0.649 Sum_probs=23.1
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++ +++|+||+|||||++.|.+-.
T Consensus 34 ~~k~~---vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 34 KGKTS---VLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTSEE---EEECSTTSSHHHHHHHHHTSS
T ss_pred cCCEE---EEECCCCCCHHHHHHHHHhhc
Confidence 45888 999999999999999998764
No 474
>PRK07261 topology modulation protein; Provisional
Probab=98.14 E-value=1.9e-06 Score=55.45 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.4
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++|+|++|||||||.+.|+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4599999999999999998754
No 475
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.14 E-value=2.5e-06 Score=62.80 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=30.1
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+ |.+.+|+.+ +|+|+||+|||||+++|+++.+
T Consensus 158 ~-l~i~~Gq~i---~I~G~sG~GKStLl~~I~~~~~ 189 (442)
T PRK06315 158 M-LTVARGQRI---GIFAGAGVGKSSLLGMIARNAE 189 (442)
T ss_pred c-ccccCCcEE---EEECCCCCCcchHHHHhhcccc
Confidence 5 999999999 9999999999999999999873
No 476
>PRK08118 topology modulation protein; Reviewed
Probab=98.14 E-value=2e-06 Score=55.34 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.2
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++.|+|++|||||||.+.|+-.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4599999999999999988754
No 477
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.13 E-value=2e-06 Score=50.75 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=20.2
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++.++|+.|+|||||++.+.+...+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 4689999999999999998866543
No 478
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.13 E-value=2.7e-06 Score=51.23 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=20.5
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++|+.|+|||||++.+.|..
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~~~ 27 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQK 27 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 35999999999999999998864
No 479
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.13 E-value=4.9e-07 Score=56.49 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=0.0
Q ss_pred EEEcCCCCCHHHHHHHHhCCC
Q 035290 44 VALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+|+|+|||||||+|++|..+.
T Consensus 3 viiG~N~sGKS~il~ai~~~~ 23 (303)
T PF13304_consen 3 VIIGPNGSGKSNILEAIYFLF 23 (303)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 789999999999999997663
No 480
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.13 E-value=4.8e-06 Score=67.10 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.8
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHH----hCCCCCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSL----IGHPVLV 67 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l----~Gl~~~~ 67 (68)
.++ +|+|||||||||++.+| .|..+|.
T Consensus 29 ~~~---~I~G~NGaGKTTil~ai~~al~G~~~~~ 59 (1311)
T TIGR00606 29 PLT---ILVGPNGAGKTTIIECLKYICTGDFPPG 59 (1311)
T ss_pred ceE---EEECCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 477 99999999999999999 5888775
No 481
>PRK01889 GTPase RsgA; Reviewed
Probab=98.12 E-value=2.1e-06 Score=61.11 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=30.0
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+.-.+.+|+++ +++|+||+|||||++.|.|...+.
T Consensus 188 L~~~L~~g~~~---~lvG~sgvGKStLin~L~g~~~~~ 222 (356)
T PRK01889 188 LAAWLSGGKTV---ALLGSSGVGKSTLVNALLGEEVQK 222 (356)
T ss_pred HHHHhhcCCEE---EEECCCCccHHHHHHHHHHhcccc
Confidence 33456789999 999999999999999999987764
No 482
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.11 E-value=2.6e-06 Score=65.59 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=22.2
Q ss_pred eEEecCCCEEeeeEEEcCCCCCHHHHHHH---HhCCC
Q 035290 31 SSSSRRSSTFLNVVALGNVGAGKSAVLNS---LIGHP 64 (68)
Q Consensus 31 s~~i~~ge~~~~~~liG~sGsGKSTLl~~---l~Gl~ 64 (68)
.+.+.+| +. +|+|||||||||+|.+ +.|..
T Consensus 18 ~i~f~~~-~~---~i~G~NGsGKS~ll~ai~~~lg~~ 50 (1179)
T TIGR02168 18 TINFDKG-IT---GIVGPNGCGKSNIVDAIRWVLGEQ 50 (1179)
T ss_pred eEEecCC-cE---EEECCCCCChhHHHHHHHHHHcCC
Confidence 3444444 76 9999999999999954 65543
No 483
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.11 E-value=2.5e-06 Score=54.93 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.4
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++|+|++|||||||++.+.+..
T Consensus 43 ~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred eEEEECCCCCCHHHHHHHHhcch
Confidence 45999999999999999998863
No 484
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.10 E-value=2.8e-06 Score=55.46 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=21.2
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
|++++|++|+|||||+++|++..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999999873
No 485
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.10 E-value=5.1e-06 Score=55.88 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=29.1
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++|+.++++++ +|.|||++||||+++++++.
T Consensus 23 i~l~~~~~~~~---~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 23 VDLGATSPRIL---VLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred eEEeecCCcEE---EEECCCCCchHHHHHHHHHH
Confidence 99999999999 99999999999999998764
No 486
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.10 E-value=1.4e-06 Score=61.42 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=25.6
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.+++++ +++||||+||||++..|++...+
T Consensus 112 ~~~~vi---~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 112 KKPFVI---LVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCCeEE---EEECCCCCcHHHHHHHHHHHHHh
Confidence 568898 99999999999999999987654
No 487
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.10 E-value=5.5e-06 Score=65.34 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=22.8
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
|+|+-.+ .++ +|+|||||||||+|.+|+
T Consensus 20 idF~~~~-gl~---~I~G~nGaGKSTildAI~ 47 (1042)
T TIGR00618 20 IDFTALG-PIF---LICGKTGAGKTTLLDAIT 47 (1042)
T ss_pred eeecCCC-CeE---EEECCCCCCHHHHHHHHH
Confidence 4554333 787 999999999999999987
No 488
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.09 E-value=3.9e-06 Score=57.51 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=28.4
Q ss_pred eEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 31 SSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 31 s~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
=+.+.+|+.+ +|+|++|+|||||++.++....
T Consensus 10 ~~~i~~Gqr~---~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 10 FAPIGKGQRG---LIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred ecccCCCCEE---EEECCCCCCHHHHHHHHHhccc
Confidence 3578999999 9999999999999999987654
No 489
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.09 E-value=2.2e-06 Score=61.36 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=24.2
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++..+ .++||+||||||++++|.+..
T Consensus 132 ~~~gli---lI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 132 PQEGIV---FITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred ccCCEE---EEECCCCCCHHHHHHHHHHHH
Confidence 477888 999999999999999998765
No 490
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.09 E-value=4.9e-06 Score=68.25 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=29.6
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
..|++.+| ++ +|+|+||+||||+|.+|.+++.|+
T Consensus 21 ~~~~f~~~-~~---~l~G~NGaGKSTll~ai~~~l~~~ 54 (1486)
T PRK04863 21 RTFDLDEL-VT---TLSGGNGAGKSTTMAAFVTALIPD 54 (1486)
T ss_pred eEEEecCC-eE---EEECCCCCCHHHHHHHHHccccCC
Confidence 56777776 77 999999999999999999998765
No 491
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.08 E-value=3e-06 Score=53.72 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=24.3
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+.+..++|+++|++|+|||||++.+.+-
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34455567899999999999999999984
No 492
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.08 E-value=3.5e-06 Score=57.59 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=21.4
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
|.++++|++||||||++++|+|+.
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCC
Confidence 344999999999999999999984
No 493
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.08 E-value=4.1e-06 Score=53.56 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=18.5
Q ss_pred eeEEEcCCCCCHHHHHHHHh
Q 035290 42 NVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~ 61 (68)
+++++|++|+|||||++.+.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~ 22 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFT 22 (187)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 56999999999999999986
No 494
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.08 E-value=2.3e-06 Score=56.12 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.5
Q ss_pred EEEcCCCCCHHHHHHHHhCCCC
Q 035290 44 VALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.|.||+||||||+++.|.+...
T Consensus 5 lI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 5 LVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEECCCCCCHHHHHHHHHHHhh
Confidence 8999999999999998877654
No 495
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.07 E-value=2.2e-06 Score=55.84 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=24.4
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++.++ +++|+|||||||+.+.|++.+
T Consensus 22 ~~~~~i---~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVL---WFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEE---EEECCCCCCHHHHHHHHHHHH
Confidence 678888 999999999999999998864
No 496
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.06 E-value=3.7e-06 Score=53.29 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=23.8
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+++..++.++ +++|++|+|||||++.+.+
T Consensus 13 ~~~~~~~~ki----~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 13 LGLYNKEAKI----LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred hhcccCCCEE----EEECCCCCCHHHHHHHHhc
Confidence 6666555444 8999999999999999987
No 497
>PRK00064 recF recombination protein F; Reviewed
Probab=98.04 E-value=5.8e-06 Score=58.82 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=26.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++.+| +. +|+|||||||||++.+|..+.
T Consensus 17 ~~l~~~~~-~~---~i~G~NgsGKT~lleai~~l~ 47 (361)
T PRK00064 17 LDLELSPG-VN---VLVGENGQGKTNLLEAIYLLA 47 (361)
T ss_pred eEEEecCC-eE---EEECCCCCCHHHHHHHHHHhC
Confidence 77888877 55 899999999999999988653
No 498
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.03 E-value=3.6e-06 Score=56.61 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=26.2
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHH-HHHHhCCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAV-LNSLIGHPV 65 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTL-l~~l~Gl~~ 65 (68)
-+++|+++ .+.|++||||||| +++++++.+
T Consensus 20 gi~~g~~~---~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 20 GIPAGSLI---LIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CCCCCcEE---EEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999 9999999999999 688887643
No 499
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.03 E-value=4.9e-06 Score=54.86 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.4
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.++.++ +|+||||||||||++.|...
T Consensus 11 ~~~~~i---vi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLV---VISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEE---EEECcCCCCHHHHHHHHHhc
Confidence 567787 99999999999999998643
No 500
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=2.9e-06 Score=65.99 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=28.5
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.++.+.+|+++ +++||||+||||++..|++..
T Consensus 178 ~~~~~~~g~Vi---~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 178 EDALLAQGGVL---ALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CCcccCCCeEE---EEECCCCCcHHHHHHHHHhhH
Confidence 66667789999 999999999999999999865
Done!