Query 035290
Match_columns 68
No_of_seqs 164 out of 1541
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 17:40:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pcj_A ABC transporter, lipopr 99.8 1E-20 3.6E-25 124.7 8.0 58 1-68 1-58 (224)
2 2olj_A Amino acid ABC transpor 99.8 4.9E-20 1.7E-24 124.7 8.0 58 1-68 21-78 (263)
3 3fvq_A Fe(3+) IONS import ATP- 99.8 4.5E-20 1.5E-24 130.2 7.7 58 1-68 1-58 (359)
4 3gfo_A Cobalt import ATP-bindi 99.8 7.8E-20 2.7E-24 124.4 8.1 57 3-68 6-62 (275)
5 1b0u_A Histidine permease; ABC 99.8 1.3E-19 4.4E-24 122.0 7.9 55 4-68 6-60 (262)
6 2nq2_C Hypothetical ABC transp 99.8 1.3E-19 4.3E-24 121.7 7.6 58 1-68 1-59 (253)
7 1g6h_A High-affinity branched- 99.8 1.5E-19 5.2E-24 121.1 7.6 56 3-68 6-61 (257)
8 1ji0_A ABC transporter; ATP bi 99.8 2.4E-19 8.1E-24 119.2 8.1 56 3-68 5-60 (240)
9 2pze_A Cystic fibrosis transme 99.8 1.4E-19 4.6E-24 119.6 6.8 59 1-68 3-62 (229)
10 4g1u_C Hemin import ATP-bindin 99.8 3.6E-19 1.2E-23 120.3 8.7 56 3-68 10-65 (266)
11 3tif_A Uncharacterized ABC tra 99.8 2.3E-19 8E-24 119.0 7.2 56 4-68 1-59 (235)
12 2ihy_A ABC transporter, ATP-bi 99.8 4E-19 1.4E-23 120.8 8.2 56 3-68 20-75 (279)
13 1vpl_A ABC transporter, ATP-bi 99.8 4.4E-19 1.5E-23 119.5 7.9 56 3-68 14-69 (256)
14 1sgw_A Putative ABC transporte 99.8 8.7E-19 3E-23 115.6 7.7 55 3-68 9-63 (214)
15 2d2e_A SUFC protein; ABC-ATPas 99.8 6.7E-19 2.3E-23 117.6 7.2 54 4-67 3-58 (250)
16 3rlf_A Maltose/maltodextrin im 99.8 7.5E-19 2.6E-23 124.7 7.9 55 4-68 3-57 (381)
17 2yyz_A Sugar ABC transporter, 99.8 7.9E-19 2.7E-23 123.5 7.9 55 4-68 3-57 (359)
18 1g29_1 MALK, maltose transport 99.8 9.1E-19 3.1E-23 123.5 8.1 55 4-68 3-57 (372)
19 3tui_C Methionine import ATP-b 99.8 7.9E-19 2.7E-23 124.2 7.8 58 2-68 22-82 (366)
20 2cbz_A Multidrug resistance-as 99.8 4E-19 1.4E-23 118.0 5.9 55 4-67 3-58 (237)
21 1mv5_A LMRA, multidrug resista 99.8 5.8E-19 2E-23 117.3 6.1 56 4-68 1-56 (243)
22 2it1_A 362AA long hypothetical 99.8 1.1E-18 3.9E-23 122.9 7.8 55 4-68 3-57 (362)
23 1v43_A Sugar-binding transport 99.8 1.3E-18 4.5E-23 122.9 8.1 55 4-68 11-65 (372)
24 2yz2_A Putative ABC transporte 99.8 1.6E-18 5.4E-23 116.8 7.9 56 4-68 2-61 (266)
25 2ixe_A Antigen peptide transpo 99.8 9.2E-19 3.2E-23 118.4 6.7 57 3-68 15-73 (271)
26 2ff7_A Alpha-hemolysin translo 99.8 1.7E-18 5.7E-23 115.7 7.7 56 4-68 7-63 (247)
27 1oxx_K GLCV, glucose, ABC tran 99.7 6.8E-19 2.3E-23 123.4 4.8 56 4-68 3-59 (353)
28 1z47_A CYSA, putative ABC-tran 99.7 1.4E-18 4.9E-23 122.1 6.1 56 3-68 13-69 (355)
29 2zu0_C Probable ATP-dependent 99.7 2.5E-18 8.6E-23 115.9 7.0 52 3-64 19-70 (267)
30 3d31_A Sulfate/molybdate ABC t 99.7 1.8E-18 6.3E-23 121.2 6.3 54 4-68 1-54 (348)
31 3nh6_A ATP-binding cassette SU 99.7 4.8E-18 1.6E-22 117.3 6.5 56 4-68 53-108 (306)
32 2qi9_C Vitamin B12 import ATP- 99.7 6.1E-18 2.1E-22 113.5 5.7 53 1-67 1-53 (249)
33 2onk_A Molybdate/tungstate ABC 99.7 1.2E-17 4.1E-22 111.4 6.8 52 4-68 1-52 (240)
34 2ghi_A Transport protein; mult 99.7 1.3E-17 4.3E-22 112.1 6.6 55 3-66 16-72 (260)
35 2pjz_A Hypothetical protein ST 99.7 1.6E-17 5.3E-22 112.4 7.0 54 4-68 1-57 (263)
36 3gd7_A Fusion complex of cysti 99.7 5.7E-17 1.9E-21 115.1 6.0 54 3-65 18-72 (390)
37 3b5x_A Lipid A export ATP-bind 99.6 2.5E-16 8.6E-21 114.8 7.1 56 4-68 341-397 (582)
38 3b60_A Lipid A export ATP-bind 99.6 2.1E-16 7.2E-21 115.2 6.3 56 4-68 341-397 (582)
39 2yl4_A ATP-binding cassette SU 99.6 4.2E-16 1.4E-20 113.9 7.0 55 5-68 342-398 (595)
40 3qf4_B Uncharacterized ABC tra 99.6 2.2E-16 7.4E-21 115.7 4.6 56 4-68 354-409 (598)
41 2bbs_A Cystic fibrosis transme 99.6 2.5E-16 8.5E-21 107.8 4.4 52 4-67 40-91 (290)
42 4a82_A Cystic fibrosis transme 99.6 4E-16 1.4E-20 113.8 5.7 56 4-68 339-395 (578)
43 3qf4_A ABC transporter, ATP-bi 99.6 1.1E-15 3.6E-20 112.0 5.9 56 4-68 341-397 (587)
44 2iw3_A Elongation factor 3A; a 99.6 1.9E-15 6.5E-20 117.1 4.8 57 3-68 670-727 (986)
45 1yqt_A RNAse L inhibitor; ATP- 99.5 4.1E-15 1.4E-19 108.4 5.6 53 6-68 22-75 (538)
46 3bk7_A ABC transporter ATP-bin 99.5 4.5E-15 1.6E-19 109.8 5.8 51 8-68 95-145 (607)
47 1yqt_A RNAse L inhibitor; ATP- 99.5 1.4E-14 4.9E-19 105.5 7.6 55 3-68 286-340 (538)
48 3bk7_A ABC transporter ATP-bin 99.5 1.7E-14 5.7E-19 106.7 7.3 55 3-68 356-410 (607)
49 3ozx_A RNAse L inhibitor; ATP 99.5 2.3E-14 7.7E-19 104.8 7.6 54 4-68 269-322 (538)
50 3g5u_A MCG1178, multidrug resi 99.5 2.4E-14 8.1E-19 112.3 6.2 56 4-68 387-444 (1284)
51 1htw_A HI0065; nucleotide-bind 99.5 1.7E-16 5.9E-21 100.4 -5.2 49 8-67 11-59 (158)
52 4f4c_A Multidrug resistance pr 99.5 3.1E-14 1E-18 111.9 5.5 56 4-68 1076-1133(1321)
53 3g5u_A MCG1178, multidrug resi 99.5 4.4E-14 1.5E-18 110.7 4.8 56 4-68 1030-1087(1284)
54 4f4c_A Multidrug resistance pr 99.4 1.1E-13 3.8E-18 108.8 6.1 56 4-68 415-472 (1321)
55 3j16_B RLI1P; ribosome recycli 99.4 1.3E-13 4.4E-18 102.2 5.3 50 9-68 82-131 (608)
56 2iw3_A Elongation factor 3A; a 99.4 6.2E-13 2.1E-17 103.1 6.9 49 4-62 435-483 (986)
57 1z6g_A Guanylate kinase; struc 99.4 1.6E-13 5.4E-18 89.3 2.3 32 30-64 16-47 (218)
58 2obl_A ESCN; ATPase, hydrolase 99.4 3.8E-14 1.3E-18 98.9 -1.4 54 4-67 45-98 (347)
59 2v9p_A Replication protein E1; 99.3 5.6E-15 1.9E-19 102.2 -5.8 50 4-64 101-150 (305)
60 3j16_B RLI1P; ribosome recycli 99.3 7.3E-13 2.5E-17 98.1 5.0 52 8-68 350-406 (608)
61 2dpy_A FLII, flagellum-specifi 99.3 5.5E-14 1.9E-18 100.6 -2.3 54 4-67 131-184 (438)
62 4gp7_A Metallophosphoesterase; 99.3 6.7E-13 2.3E-17 83.3 2.8 28 30-60 2-29 (171)
63 2npi_A Protein CLP1; CLP1-PCF1 99.3 1.6E-14 5.3E-19 104.1 -5.5 35 30-67 131-165 (460)
64 3ozx_A RNAse L inhibitor; ATP 99.3 5.3E-12 1.8E-16 92.3 5.4 50 8-68 3-53 (538)
65 3lnc_A Guanylate kinase, GMP k 99.3 1.6E-12 5.6E-17 84.1 2.2 32 30-64 20-52 (231)
66 1znw_A Guanylate kinase, GMP k 99.2 2.2E-12 7.4E-17 82.7 2.6 31 32-65 15-45 (207)
67 3euj_A Chromosome partition pr 99.2 5E-12 1.7E-16 92.0 4.3 35 30-68 23-57 (483)
68 3ux8_A Excinuclease ABC, A sub 99.2 4.4E-12 1.5E-16 93.6 3.9 35 30-67 37-92 (670)
69 3tr0_A Guanylate kinase, GMP k 99.2 5.6E-12 1.9E-16 79.3 2.7 31 31-64 1-31 (205)
70 1pui_A ENGB, probable GTP-bind 99.2 3E-12 1E-16 80.5 0.8 48 4-64 3-50 (210)
71 3b85_A Phosphate starvation-in 99.2 1.6E-12 5.4E-17 85.0 -0.5 30 34-67 19-48 (208)
72 2jeo_A Uridine-cytidine kinase 99.2 6.7E-12 2.3E-16 82.3 2.4 37 18-63 12-48 (245)
73 2gza_A Type IV secretion syste 99.2 6.6E-13 2.2E-17 92.5 -2.7 36 30-68 168-203 (361)
74 2qag_B Septin-6, protein NEDD5 99.2 2E-12 7E-17 92.9 -0.4 48 5-64 17-66 (427)
75 3nwj_A ATSK2; P loop, shikimat 99.1 1.4E-12 4.9E-17 87.5 -2.1 51 3-62 16-70 (250)
76 3aez_A Pantothenate kinase; tr 99.1 2.8E-13 9.5E-18 93.2 -6.0 31 34-67 87-117 (312)
77 1sq5_A Pantothenate kinase; P- 99.1 2E-13 6.8E-18 92.9 -6.7 50 4-65 37-105 (308)
78 1tf7_A KAIC; homohexamer, hexa 99.1 2.2E-12 7.4E-17 93.0 -1.9 54 4-67 12-68 (525)
79 2qm8_A GTPase/ATPase; G protei 99.1 1.7E-13 5.7E-18 94.8 -7.4 54 4-67 29-82 (337)
80 1tq4_A IIGP1, interferon-induc 99.1 7.3E-12 2.5E-16 89.5 0.6 36 30-68 42-97 (413)
81 2pt7_A CAG-ALFA; ATPase, prote 99.1 8.9E-12 3E-16 86.0 -0.4 36 30-68 164-199 (330)
82 2eyu_A Twitching motility prot 99.1 1.7E-12 5.8E-17 87.2 -4.0 47 5-67 6-52 (261)
83 1s96_A Guanylate kinase, GMP k 99.1 4.6E-11 1.6E-15 78.5 2.8 31 33-66 12-42 (219)
84 3b9q_A Chloroplast SRP recepto 99.1 1.3E-11 4.5E-16 84.5 0.0 35 30-67 93-127 (302)
85 2qag_C Septin-7; cell cycle, c 99.1 5.2E-11 1.8E-15 85.0 3.0 49 2-66 9-57 (418)
86 4a74_A DNA repair and recombin 99.0 5.6E-11 1.9E-15 75.4 2.2 31 33-66 21-51 (231)
87 2o8b_B DNA mismatch repair pro 99.0 6E-11 2.1E-15 92.1 2.3 51 4-64 750-812 (1022)
88 2j41_A Guanylate kinase; GMP, 99.0 1.5E-10 5.1E-15 72.6 3.6 31 33-66 2-32 (207)
89 2ehv_A Hypothetical protein PH 99.0 4.5E-11 1.5E-15 76.7 1.1 26 33-61 26-51 (251)
90 1zp6_A Hypothetical protein AT 99.0 1.6E-10 5.6E-15 72.0 3.4 28 33-63 5-32 (191)
91 3ux8_A Excinuclease ABC, A sub 99.0 1.6E-10 5.4E-15 85.3 3.8 29 30-61 341-369 (670)
92 1lw7_A Transcriptional regulat 99.0 2.7E-11 9.3E-16 83.6 -0.3 35 30-67 161-197 (365)
93 3c8u_A Fructokinase; YP_612366 99.0 5.6E-11 1.9E-15 76.1 0.4 30 34-66 19-48 (208)
94 2og2_A Putative signal recogni 99.0 4.6E-11 1.6E-15 84.0 -0.0 35 30-67 150-184 (359)
95 3kta_A Chromosome segregation 99.0 3E-10 1E-14 70.6 3.4 33 30-66 20-52 (182)
96 3sop_A Neuronal-specific septi 99.0 1.1E-10 3.9E-15 78.6 1.4 26 42-67 4-29 (270)
97 1u0l_A Probable GTPase ENGC; p 99.0 2E-10 6.8E-15 77.9 2.5 34 32-68 164-197 (301)
98 4aby_A DNA repair protein RECN 99.0 1E-10 3.5E-15 80.8 0.9 32 30-65 54-85 (415)
99 2yhs_A FTSY, cell division pro 99.0 7.9E-11 2.7E-15 86.3 0.2 35 30-67 286-320 (503)
100 3asz_A Uridine kinase; cytidin 99.0 1.3E-10 4.5E-15 73.7 1.1 29 34-65 3-31 (211)
101 1lvg_A Guanylate kinase, GMP k 98.9 1.5E-10 5.2E-15 74.0 1.3 27 35-64 2-28 (198)
102 3a00_A Guanylate kinase, GMP k 98.9 2.3E-10 8E-15 72.1 1.9 26 37-65 1-26 (186)
103 2qnr_A Septin-2, protein NEDD5 98.9 7.7E-10 2.6E-14 75.2 2.8 43 8-66 2-45 (301)
104 1kgd_A CASK, peripheral plasma 98.9 8.6E-10 3E-14 69.3 2.8 28 35-65 3-30 (180)
105 1cr0_A DNA primase/helicase; R 98.9 1.5E-10 5.1E-15 77.2 -0.8 35 30-67 28-62 (296)
106 2oap_1 GSPE-2, type II secreti 98.9 2.7E-10 9.1E-15 82.9 0.3 36 30-68 253-288 (511)
107 2vf7_A UVRA2, excinuclease ABC 98.9 7.1E-10 2.4E-14 85.0 2.5 45 4-63 502-547 (842)
108 1ye8_A Protein THEP1, hypothet 98.8 7.6E-10 2.6E-14 70.5 1.9 23 42-64 2-24 (178)
109 1p9r_A General secretion pathw 98.8 4E-11 1.4E-15 85.5 -4.4 30 35-67 165-194 (418)
110 3vaa_A Shikimate kinase, SK; s 98.8 1.7E-09 6E-14 68.5 3.6 30 30-62 18-47 (199)
111 1rj9_A FTSY, signal recognitio 98.8 6.7E-10 2.3E-14 76.2 1.7 29 36-67 101-129 (304)
112 3szr_A Interferon-induced GTP- 98.8 2.2E-10 7.4E-15 84.5 -1.8 55 4-66 10-71 (608)
113 2i3b_A HCR-ntpase, human cance 98.8 6.7E-10 2.3E-14 71.6 0.7 26 37-65 1-26 (189)
114 2bbw_A Adenylate kinase 4, AK4 98.8 3E-09 1E-13 69.4 3.8 29 36-67 26-57 (246)
115 3tau_A Guanylate kinase, GMP k 98.8 3.4E-09 1.2E-13 67.9 3.5 29 35-66 6-34 (208)
116 1w1w_A Structural maintenance 98.8 3.8E-09 1.3E-13 74.2 4.0 47 5-67 7-53 (430)
117 1t9h_A YLOQ, probable GTPase E 98.8 5.9E-10 2E-14 76.9 -0.3 33 32-67 168-200 (307)
118 3uie_A Adenylyl-sulfate kinase 98.8 5.1E-10 1.7E-14 71.1 -0.9 32 30-64 18-49 (200)
119 3e70_C DPA, signal recognition 98.8 1.2E-09 4.1E-14 75.7 0.8 31 34-67 126-156 (328)
120 4e22_A Cytidylate kinase; P-lo 98.8 2.6E-09 8.8E-14 70.6 2.3 30 35-67 25-57 (252)
121 3thx_A DNA mismatch repair pro 98.8 5.8E-09 2E-13 80.6 4.5 34 30-66 655-696 (934)
122 1qhl_A Protein (cell division 98.8 8.9E-11 3.1E-15 78.0 -5.0 31 33-67 24-54 (227)
123 2yv5_A YJEQ protein; hydrolase 98.7 3.7E-09 1.3E-13 71.9 2.8 33 32-68 160-192 (302)
124 4eun_A Thermoresistant glucoki 98.7 4.6E-09 1.6E-13 66.6 3.0 29 32-63 24-52 (200)
125 2rcn_A Probable GTPase ENGC; Y 98.7 7.8E-09 2.7E-13 72.8 4.4 34 30-67 209-243 (358)
126 1ewq_A DNA mismatch repair pro 98.7 3.9E-09 1.3E-13 80.1 2.6 29 30-64 572-600 (765)
127 1wb9_A DNA mismatch repair pro 98.7 5.6E-09 1.9E-13 79.5 3.4 30 30-63 601-630 (800)
128 2o5v_A DNA replication and rep 98.7 5.4E-09 1.8E-13 73.3 2.9 30 30-63 20-49 (359)
129 2ygr_A Uvrabc system protein A 98.7 7.9E-09 2.7E-13 80.5 4.0 28 30-60 661-688 (993)
130 3thx_B DNA mismatch repair pro 98.7 3.3E-09 1.1E-13 81.9 1.9 30 30-62 666-695 (918)
131 2w0m_A SSO2452; RECA, SSPF, un 98.7 1E-08 3.5E-13 64.6 3.2 32 30-64 15-47 (235)
132 2r6f_A Excinuclease ABC subuni 98.7 8.1E-09 2.8E-13 80.3 3.2 29 30-61 643-671 (972)
133 3ec2_A DNA replication protein 98.7 4.7E-09 1.6E-13 65.3 1.4 32 31-65 32-63 (180)
134 3jvv_A Twitching mobility prot 98.7 1.1E-09 3.7E-14 76.7 -1.8 32 33-67 119-150 (356)
135 2ewv_A Twitching motility prot 98.7 2.4E-09 8.3E-14 74.8 -0.3 31 34-67 133-163 (372)
136 1udx_A The GTP-binding protein 98.7 1.7E-08 5.9E-13 72.0 4.0 33 29-64 149-181 (416)
137 2vp4_A Deoxynucleoside kinase; 98.7 9E-09 3.1E-13 66.8 2.3 30 31-63 14-43 (230)
138 2bdt_A BH3686; alpha-beta prot 98.6 8E-09 2.7E-13 64.5 1.8 23 37-62 2-24 (189)
139 1kag_A SKI, shikimate kinase I 98.6 1.2E-08 4.2E-13 62.5 2.4 27 36-65 3-29 (173)
140 1n0w_A DNA repair protein RAD5 98.6 2.4E-08 8.2E-13 63.7 3.5 27 33-62 20-46 (243)
141 2x8a_A Nuclear valosin-contain 98.6 5.2E-09 1.8E-13 70.2 0.1 32 30-66 39-70 (274)
142 3qf7_A RAD50; ABC-ATPase, ATPa 98.6 3.9E-08 1.3E-12 68.4 4.1 28 30-61 17-44 (365)
143 1knq_A Gluconate kinase; ALFA/ 98.6 2.4E-08 8.1E-13 61.5 2.4 26 35-63 6-31 (175)
144 1oix_A RAS-related protein RAB 98.6 3.7E-08 1.3E-12 61.7 3.2 29 38-66 27-55 (191)
145 1iy2_A ATP-dependent metallopr 98.6 6.1E-10 2.1E-14 73.8 -5.3 30 30-64 68-97 (278)
146 1in4_A RUVB, holliday junction 98.6 5.2E-10 1.8E-14 76.4 -5.8 49 6-64 20-75 (334)
147 3pih_A Uvrabc system protein A 98.6 6.9E-08 2.4E-12 74.6 5.3 25 30-57 603-627 (916)
148 1e69_A Chromosome segregation 98.5 3.4E-08 1.2E-12 67.2 3.0 31 30-64 18-48 (322)
149 1svm_A Large T antigen; AAA+ f 98.5 1.4E-08 4.6E-13 71.7 0.7 31 30-63 162-192 (377)
150 3ney_A 55 kDa erythrocyte memb 98.5 3.8E-08 1.3E-12 64.3 2.6 31 32-65 14-44 (197)
151 2qt1_A Nicotinamide riboside k 98.5 4.7E-08 1.6E-12 61.9 2.8 29 33-64 17-45 (207)
152 2f9l_A RAB11B, member RAS onco 98.5 6.8E-08 2.3E-12 60.4 3.3 25 41-65 6-30 (199)
153 1rz3_A Hypothetical protein rb 98.5 1.9E-08 6.7E-13 64.0 0.6 28 34-64 19-46 (201)
154 2cvh_A DNA repair and recombin 98.5 6.3E-08 2.2E-12 60.9 2.9 27 33-62 16-42 (220)
155 2kjq_A DNAA-related protein; s 98.5 2.3E-08 7.7E-13 61.9 0.7 27 36-65 35-61 (149)
156 2f1r_A Molybdopterin-guanine d 98.5 9.9E-09 3.4E-13 65.3 -1.2 25 43-67 5-29 (171)
157 1ixz_A ATP-dependent metallopr 98.5 2.3E-08 7.8E-13 65.1 0.5 30 30-64 44-73 (254)
158 1nlf_A Regulatory protein REPA 98.5 8.3E-08 2.8E-12 63.6 2.9 28 33-63 26-53 (279)
159 1pzn_A RAD51, DNA repair and r 98.5 4.7E-08 1.6E-12 67.7 1.8 31 31-64 125-155 (349)
160 3cr8_A Sulfate adenylyltranfer 98.4 2E-08 6.8E-13 73.8 -0.3 31 33-66 365-395 (552)
161 3ice_A Transcription terminati 98.4 4.6E-08 1.6E-12 70.6 1.2 52 5-63 134-197 (422)
162 1jjv_A Dephospho-COA kinase; P 98.4 1.8E-07 6.3E-12 58.9 3.5 21 43-63 5-25 (206)
163 1tf7_A KAIC; homohexamer, hexa 98.4 7.7E-08 2.6E-12 69.3 1.7 33 31-66 275-307 (525)
164 1nij_A Hypothetical protein YJ 98.4 1E-07 3.6E-12 64.9 2.2 22 43-64 7-28 (318)
165 1f2t_A RAD50 ABC-ATPase; DNA d 98.4 3.1E-07 1.1E-11 56.7 3.8 28 30-61 17-44 (149)
166 1cke_A CK, MSSA, protein (cyti 98.3 2.3E-07 8E-12 58.9 3.0 24 37-63 5-28 (227)
167 2qor_A Guanylate kinase; phosp 98.3 2.6E-07 8.8E-12 58.6 3.2 29 33-64 8-36 (204)
168 2wji_A Ferrous iron transport 98.3 4.8E-07 1.6E-11 55.0 4.2 23 42-64 5-27 (165)
169 3tqc_A Pantothenate kinase; bi 98.3 1.2E-07 4.2E-12 65.7 1.6 24 39-65 94-117 (321)
170 1y63_A LMAJ004144AAA protein; 98.3 2.8E-07 9.7E-12 57.7 3.2 30 30-62 3-32 (184)
171 1vma_A Cell division protein F 98.3 6.2E-08 2.1E-12 66.5 0.0 34 30-66 97-130 (306)
172 1zu4_A FTSY; GTPase, signal re 98.3 6.7E-08 2.3E-12 66.6 -0.1 34 30-66 98-131 (320)
173 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 2.3E-07 7.9E-12 65.8 2.5 28 33-63 16-43 (392)
174 2zej_A Dardarin, leucine-rich 98.3 4.4E-07 1.5E-11 56.1 3.4 23 42-64 4-26 (184)
175 2if2_A Dephospho-COA kinase; a 98.3 2.6E-07 8.9E-12 58.0 2.3 20 43-62 4-23 (204)
176 2pez_A Bifunctional 3'-phospho 98.3 3E-07 1E-11 56.9 2.5 26 35-63 3-28 (179)
177 3k1j_A LON protease, ATP-depen 98.3 7E-08 2.4E-12 70.6 -0.8 35 30-67 53-87 (604)
178 2wjg_A FEOB, ferrous iron tran 98.3 5.9E-07 2E-11 54.9 3.4 23 41-63 8-30 (188)
179 3lda_A DNA repair protein RAD5 98.3 6.4E-07 2.2E-11 63.5 3.9 31 33-66 174-206 (400)
180 3lxx_A GTPase IMAP family memb 98.3 9E-07 3.1E-11 57.1 4.2 27 40-66 29-55 (239)
181 2px0_A Flagellar biosynthesis 98.2 3E-07 1E-11 62.6 1.1 29 35-66 103-131 (296)
182 4eaq_A DTMP kinase, thymidylat 98.2 8.3E-07 2.8E-11 58.1 3.0 32 30-64 16-50 (229)
183 1ls1_A Signal recognition part 98.2 2.2E-07 7.6E-12 63.1 0.2 32 30-66 93-124 (295)
184 3qkt_A DNA double-strand break 98.2 1.4E-06 4.6E-11 59.7 4.1 27 30-60 17-43 (339)
185 1odf_A YGR205W, hypothetical 3 98.2 2.9E-07 9.9E-12 62.6 0.6 28 35-65 29-56 (290)
186 2gj8_A MNME, tRNA modification 98.2 1.3E-06 4.3E-11 53.8 3.3 22 43-64 7-28 (172)
187 2dr3_A UPF0273 protein PH0284; 98.2 1.4E-06 4.7E-11 55.5 3.6 25 33-60 19-43 (247)
188 3qks_A DNA double-strand break 98.1 1.7E-06 6E-11 55.5 3.8 28 30-61 17-44 (203)
189 1mky_A Probable GTP-binding pr 98.1 1.8E-06 6.2E-11 60.8 3.7 25 41-65 181-205 (439)
190 3t61_A Gluconokinase; PSI-biol 98.1 1.5E-06 5.3E-11 54.6 2.8 23 37-62 18-40 (202)
191 4ad8_A DNA repair protein RECN 98.1 3.9E-07 1.3E-11 65.5 -0.2 30 30-63 54-83 (517)
192 3cm0_A Adenylate kinase; ATP-b 98.1 1.5E-06 5.3E-11 53.5 2.6 23 36-61 3-25 (186)
193 3k53_A Ferrous iron transport 98.1 2E-06 6.7E-11 56.8 3.2 25 41-65 4-28 (271)
194 1ega_A Protein (GTP-binding pr 98.1 1.1E-06 3.7E-11 59.5 1.8 21 44-64 12-32 (301)
195 2yvu_A Probable adenylyl-sulfa 98.1 1.8E-06 6.2E-11 53.6 2.6 29 32-63 8-36 (186)
196 2www_A Methylmalonic aciduria 98.1 7.5E-07 2.5E-11 61.6 0.9 25 37-64 74-98 (349)
197 1sxj_E Activator 1 40 kDa subu 98.1 1.3E-06 4.5E-11 58.6 2.0 24 43-66 39-63 (354)
198 2p67_A LAO/AO transport system 98.1 6.5E-07 2.2E-11 61.5 0.5 32 30-64 49-80 (341)
199 3kb2_A SPBC2 prophage-derived 98.1 2.8E-06 9.5E-11 51.4 3.2 20 43-62 4-23 (173)
200 1qhx_A CPT, protein (chloramph 98.0 3.8E-06 1.3E-10 51.4 3.6 23 37-62 3-25 (178)
201 1m7g_A Adenylylsulfate kinase; 98.0 2.6E-06 8.7E-11 54.2 2.7 30 32-64 20-49 (211)
202 2dyk_A GTP-binding protein; GT 98.0 2.9E-06 9.8E-11 50.3 2.7 24 41-64 2-25 (161)
203 2nzj_A GTP-binding protein REM 98.0 4.2E-06 1.4E-10 50.2 3.5 24 41-64 5-28 (175)
204 1via_A Shikimate kinase; struc 98.0 3.1E-06 1E-10 52.1 2.8 20 43-62 7-26 (175)
205 2jaq_A Deoxyguanosine kinase; 98.0 3.4E-06 1.2E-10 52.2 3.0 20 43-62 3-22 (205)
206 1kht_A Adenylate kinase; phosp 98.0 4.7E-06 1.6E-10 51.1 3.5 23 37-62 3-25 (192)
207 3tw8_B RAS-related protein RAB 98.0 5.9E-06 2E-10 49.6 3.8 26 39-64 8-33 (181)
208 1q3t_A Cytidylate kinase; nucl 98.0 4.9E-06 1.7E-10 53.8 3.6 27 33-62 12-38 (236)
209 3q72_A GTP-binding protein RAD 98.0 4.2E-06 1.5E-10 49.9 2.9 24 42-65 4-27 (166)
210 2ged_A SR-beta, signal recogni 98.0 3.3E-06 1.1E-10 51.8 2.4 24 41-64 49-72 (193)
211 3trf_A Shikimate kinase, SK; a 98.0 4.3E-06 1.5E-10 51.6 3.0 18 44-61 9-26 (185)
212 2erx_A GTP-binding protein DI- 98.0 5.9E-06 2E-10 49.1 3.4 22 42-63 5-26 (172)
213 1z2a_A RAS-related protein RAB 98.0 6.2E-06 2.1E-10 49.0 3.5 23 41-63 6-28 (168)
214 3q85_A GTP-binding protein REM 98.0 6.1E-06 2.1E-10 49.3 3.4 24 41-64 3-26 (169)
215 1sxj_C Activator 1 40 kDa subu 98.0 2.8E-07 9.7E-12 62.4 -2.8 32 30-64 37-70 (340)
216 3t34_A Dynamin-related protein 98.0 4.8E-06 1.6E-10 57.1 3.2 29 30-64 30-58 (360)
217 3pqc_A Probable GTP-binding pr 97.9 4.4E-06 1.5E-10 50.9 2.7 24 41-64 24-47 (195)
218 1ypw_A Transitional endoplasmi 97.9 2.9E-06 1E-10 64.3 2.2 31 32-65 233-263 (806)
219 2v54_A DTMP kinase, thymidylat 97.9 6.9E-06 2.3E-10 51.1 3.6 26 36-64 3-28 (204)
220 3lw7_A Adenylate kinase relate 97.9 5.9E-06 2E-10 49.4 3.1 18 43-60 4-21 (179)
221 2rhm_A Putative kinase; P-loop 97.9 4.8E-06 1.7E-10 51.3 2.8 25 35-62 3-27 (193)
222 1svi_A GTP-binding protein YSX 97.9 4.7E-06 1.6E-10 51.1 2.7 24 41-64 24-47 (195)
223 3m6a_A ATP-dependent protease 97.9 2.6E-06 9E-11 61.9 1.7 32 30-65 102-133 (543)
224 1f6b_A SAR1; gtpases, N-termin 97.9 5.7E-07 2E-11 56.4 -1.6 30 30-63 19-48 (198)
225 2lkc_A Translation initiation 97.9 9.6E-06 3.3E-10 48.8 3.9 22 42-63 10-31 (178)
226 1fzq_A ADP-ribosylation factor 97.9 6.4E-06 2.2E-10 50.7 3.2 23 42-64 18-40 (181)
227 1ex7_A Guanylate kinase; subst 97.9 5.6E-06 1.9E-10 53.3 2.9 18 44-61 5-22 (186)
228 2qag_A Septin-2, protein NEDD5 97.9 5.5E-06 1.9E-10 57.4 3.1 24 42-65 39-62 (361)
229 3t1o_A Gliding protein MGLA; G 97.9 6.1E-06 2.1E-10 50.2 2.9 30 36-65 10-39 (198)
230 1u8z_A RAS-related protein RAL 97.9 8.3E-06 2.8E-10 48.2 3.4 23 41-63 5-27 (168)
231 1lv7_A FTSH; alpha/beta domain 97.9 4.5E-06 1.5E-10 54.2 2.4 20 44-63 49-68 (257)
232 1ky3_A GTP-binding protein YPT 97.9 8.5E-06 2.9E-10 49.0 3.4 23 41-63 9-31 (182)
233 3lxw_A GTPase IMAP family memb 97.9 7.3E-06 2.5E-10 53.7 3.4 25 41-65 22-46 (247)
234 2fn4_A P23, RAS-related protei 97.9 5.4E-06 1.8E-10 49.8 2.5 23 41-63 10-32 (181)
235 2ce2_X GTPase HRAS; signaling 97.9 7.9E-06 2.7E-10 48.1 3.2 22 42-63 5-26 (166)
236 1z08_A RAS-related protein RAB 97.9 9E-06 3.1E-10 48.5 3.5 23 41-63 7-29 (170)
237 2cxx_A Probable GTP-binding pr 97.9 8.8E-06 3E-10 49.4 3.5 24 41-64 2-25 (190)
238 1wms_A RAB-9, RAB9, RAS-relate 97.9 6.1E-06 2.1E-10 49.6 2.7 23 41-63 8-30 (177)
239 1kao_A RAP2A; GTP-binding prot 97.9 9.5E-06 3.3E-10 47.9 3.5 21 42-62 5-25 (167)
240 1ek0_A Protein (GTP-binding pr 97.9 9E-06 3.1E-10 48.2 3.4 23 42-64 5-27 (170)
241 1z0j_A RAB-22, RAS-related pro 97.9 9.3E-06 3.2E-10 48.3 3.4 24 41-64 7-30 (170)
242 1g16_A RAS-related protein SEC 97.9 5.7E-06 2E-10 49.2 2.5 24 41-64 4-27 (170)
243 3iby_A Ferrous iron transport 97.9 6.3E-06 2.2E-10 54.6 2.9 24 41-64 2-25 (256)
244 1vht_A Dephospho-COA kinase; s 97.9 7.8E-06 2.7E-10 51.9 3.1 19 44-62 8-26 (218)
245 1nks_A Adenylate kinase; therm 97.9 8.3E-06 2.8E-10 49.9 3.1 20 43-62 4-23 (194)
246 3b1v_A Ferrous iron uptake tra 97.9 1.3E-05 4.3E-10 53.8 4.2 23 42-64 5-27 (272)
247 1moz_A ARL1, ADP-ribosylation 97.9 6.2E-06 2.1E-10 50.0 2.5 21 42-62 20-40 (183)
248 1uf9_A TT1252 protein; P-loop, 97.9 8.2E-06 2.8E-10 50.6 3.1 21 43-63 11-31 (203)
249 3iij_A Coilin-interacting nucl 97.9 7.9E-06 2.7E-10 50.4 2.9 25 34-61 8-32 (180)
250 3clv_A RAB5 protein, putative; 97.9 1E-05 3.6E-10 49.0 3.4 23 42-64 9-31 (208)
251 3fb4_A Adenylate kinase; psych 97.9 8.4E-06 2.9E-10 51.5 3.0 20 42-61 2-21 (216)
252 2qtf_A Protein HFLX, GTP-bindi 97.9 7.5E-06 2.6E-10 57.1 3.1 23 43-65 182-204 (364)
253 3auy_A DNA double-strand break 97.9 1.1E-05 3.9E-10 55.6 3.9 28 30-61 19-46 (371)
254 1c1y_A RAS-related protein RAP 97.9 1.2E-05 4E-10 47.7 3.4 22 42-63 5-26 (167)
255 2wwf_A Thymidilate kinase, put 97.9 1.1E-05 3.8E-10 50.4 3.5 26 34-62 7-32 (212)
256 2c95_A Adenylate kinase 1; tra 97.9 1.1E-05 3.9E-10 49.7 3.4 24 35-61 7-30 (196)
257 3bc1_A RAS-related protein RAB 97.9 1.2E-05 4E-10 48.7 3.4 26 38-63 9-34 (195)
258 1r2q_A RAS-related protein RAB 97.8 8.5E-06 2.9E-10 48.3 2.7 22 41-62 7-28 (170)
259 3dl0_A Adenylate kinase; phosp 97.8 9.7E-06 3.3E-10 51.3 3.0 20 42-61 2-21 (216)
260 4bas_A ADP-ribosylation factor 97.8 1.2E-05 4.2E-10 49.2 3.4 28 37-64 14-41 (199)
261 2plr_A DTMP kinase, probable t 97.8 1E-05 3.6E-10 50.3 3.1 23 37-62 4-26 (213)
262 2hxs_A RAB-26, RAS-related pro 97.8 1.1E-05 3.7E-10 48.6 3.1 23 41-63 7-29 (178)
263 1ly1_A Polynucleotide kinase; 97.8 1.1E-05 3.8E-10 49.0 3.2 20 43-62 5-24 (181)
264 2oil_A CATX-8, RAS-related pro 97.8 8.8E-06 3E-10 50.0 2.7 26 38-63 23-48 (193)
265 2a9k_A RAS-related protein RAL 97.8 1.3E-05 4.4E-10 48.3 3.4 23 41-63 19-41 (187)
266 1np6_A Molybdopterin-guanine d 97.8 8.9E-06 3E-10 51.7 2.7 20 44-63 10-29 (174)
267 4dsu_A GTPase KRAS, isoform 2B 97.8 1.3E-05 4.6E-10 48.5 3.4 23 41-63 5-27 (189)
268 1m2o_B GTP-binding protein SAR 97.8 6.3E-06 2.1E-10 51.2 1.9 29 30-62 17-45 (190)
269 1upt_A ARL1, ADP-ribosylation 97.8 9.7E-06 3.3E-10 48.4 2.7 21 42-62 9-29 (171)
270 3cbq_A GTP-binding protein REM 97.8 1.2E-05 4E-10 50.4 3.1 24 40-63 23-46 (195)
271 1nn5_A Similar to deoxythymidy 97.8 1.3E-05 4.6E-10 50.0 3.4 25 34-61 6-30 (215)
272 2xtp_A GTPase IMAP family memb 97.8 1.2E-05 4.1E-10 52.2 3.2 24 41-64 23-46 (260)
273 2g6b_A RAS-related protein RAB 97.8 1E-05 3.5E-10 48.8 2.7 26 39-64 9-34 (180)
274 1z0f_A RAB14, member RAS oncog 97.8 1E-05 3.5E-10 48.5 2.7 28 37-64 12-39 (179)
275 2dhr_A FTSH; AAA+ protein, hex 97.8 4.8E-06 1.6E-10 60.6 1.4 30 30-64 59-88 (499)
276 2bov_A RAla, RAS-related prote 97.8 1E-05 3.4E-10 49.9 2.7 23 41-63 15-37 (206)
277 3t5d_A Septin-7; GTP-binding p 97.8 1.2E-05 4.2E-10 53.1 3.2 23 42-64 10-32 (274)
278 2ze6_A Isopentenyl transferase 97.8 1.1E-05 3.7E-10 53.3 2.9 20 43-62 4-23 (253)
279 2h57_A ADP-ribosylation factor 97.8 1.2E-05 4.3E-10 49.3 3.0 24 41-64 22-45 (190)
280 3tkl_A RAS-related protein RAB 97.8 1.5E-05 5.3E-10 48.7 3.4 27 38-64 14-40 (196)
281 2y8e_A RAB-protein 6, GH09086P 97.8 1.4E-05 4.9E-10 47.8 3.2 22 41-62 15-36 (179)
282 1nrj_B SR-beta, signal recogni 97.8 9.3E-06 3.2E-10 50.9 2.4 24 41-64 13-36 (218)
283 1ksh_A ARF-like protein 2; sma 97.8 1.6E-05 5.6E-10 48.4 3.4 23 42-64 20-42 (186)
284 3hr8_A Protein RECA; alpha and 97.8 1.2E-05 3.9E-10 56.5 3.0 27 34-63 58-84 (356)
285 3con_A GTPase NRAS; structural 97.8 1.1E-05 3.8E-10 49.3 2.7 23 41-63 22-44 (190)
286 2ffh_A Protein (FFH); SRP54, s 97.8 3.8E-06 1.3E-10 60.1 0.6 32 30-66 93-124 (425)
287 2efe_B Small GTP-binding prote 97.8 1.7E-05 5.8E-10 47.8 3.5 23 41-63 13-35 (181)
288 1zbd_A Rabphilin-3A; G protein 97.8 1.6E-05 5.4E-10 49.2 3.4 24 41-64 9-32 (203)
289 2bme_A RAB4A, RAS-related prot 97.8 1.5E-05 5.1E-10 48.3 3.2 24 40-63 10-33 (186)
290 2vf7_A UVRA2, excinuclease ABC 97.8 1.7E-05 5.7E-10 61.0 4.0 25 30-57 29-53 (842)
291 2ga8_A Hypothetical 39.9 kDa p 97.8 2.9E-06 1E-10 60.0 -0.1 33 30-63 15-47 (359)
292 2il1_A RAB12; G-protein, GDP, 97.8 1.7E-05 5.7E-10 49.1 3.4 28 37-64 23-50 (192)
293 1jwy_B Dynamin A GTPase domain 97.8 1.2E-05 4.2E-10 53.3 2.9 25 41-65 25-49 (315)
294 2qu8_A Putative nucleolar GTP- 97.8 1.7E-05 5.8E-10 50.5 3.4 23 41-63 30-52 (228)
295 1r8s_A ADP-ribosylation factor 97.8 1.1E-05 3.9E-10 47.9 2.5 21 42-62 2-22 (164)
296 2p5t_B PEZT; postsegregational 97.8 6.8E-06 2.3E-10 53.9 1.5 29 33-64 28-56 (253)
297 3r20_A Cytidylate kinase; stru 97.8 1.5E-05 5E-10 53.1 3.2 18 44-61 13-30 (233)
298 4dhe_A Probable GTP-binding pr 97.8 5.3E-06 1.8E-10 52.1 1.0 24 41-64 30-53 (223)
299 1gtv_A TMK, thymidylate kinase 97.8 4.7E-06 1.6E-10 52.2 0.6 21 43-63 3-23 (214)
300 2iyv_A Shikimate kinase, SK; t 97.8 1.3E-05 4.5E-10 49.4 2.7 20 43-62 5-24 (184)
301 2aka_B Dynamin-1; fusion prote 97.8 1.2E-05 4.3E-10 52.7 2.7 25 41-65 27-51 (299)
302 1tev_A UMP-CMP kinase; ploop, 97.8 1.6E-05 5.6E-10 48.7 3.0 18 44-61 7-24 (196)
303 3kkq_A RAS-related protein M-R 97.8 2.1E-05 7.3E-10 47.7 3.4 23 41-63 19-41 (183)
304 2gf0_A GTP-binding protein DI- 97.8 1.3E-05 4.6E-10 49.1 2.5 22 41-62 9-30 (199)
305 2pt5_A Shikimate kinase, SK; a 97.8 1.8E-05 6.2E-10 47.9 3.1 20 43-62 3-22 (168)
306 3i8s_A Ferrous iron transport 97.8 1.8E-05 6E-10 52.7 3.2 24 41-64 4-27 (274)
307 2z0h_A DTMP kinase, thymidylat 97.7 1.8E-05 6.3E-10 48.8 3.1 20 43-62 3-22 (197)
308 1e6c_A Shikimate kinase; phosp 97.7 1.6E-05 5.6E-10 48.2 2.8 20 43-62 5-24 (173)
309 3a1s_A Iron(II) transport prot 97.7 2E-05 6.8E-10 52.2 3.4 24 41-64 6-29 (258)
310 1vg8_A RAS-related protein RAB 97.7 2.2E-05 7.5E-10 48.5 3.4 24 41-64 9-32 (207)
311 3t5g_A GTP-binding protein RHE 97.7 1.9E-05 6.6E-10 47.8 3.1 21 41-61 7-27 (181)
312 2f7s_A C25KG, RAS-related prot 97.7 2.2E-05 7.7E-10 49.1 3.5 27 38-64 23-49 (217)
313 1gvn_B Zeta; postsegregational 97.7 1.5E-05 5E-10 53.7 2.7 25 35-62 31-55 (287)
314 1z06_A RAS-related protein RAB 97.7 2.2E-05 7.7E-10 48.1 3.4 22 41-62 21-42 (189)
315 2fg5_A RAB-22B, RAS-related pr 97.7 1.5E-05 5E-10 49.3 2.5 25 40-64 23-47 (192)
316 2gf9_A RAS-related protein RAB 97.7 2.2E-05 7.6E-10 48.1 3.4 27 38-64 20-46 (189)
317 1zj6_A ADP-ribosylation factor 97.7 2.1E-05 7.1E-10 48.2 3.2 22 42-63 18-39 (187)
318 2bwj_A Adenylate kinase 5; pho 97.7 1.2E-05 4.3E-10 49.6 2.2 26 34-62 9-34 (199)
319 1mh1_A RAC1; GTP-binding, GTPa 97.7 1.6E-05 5.6E-10 48.0 2.7 21 42-62 7-27 (186)
320 3oes_A GTPase rhebl1; small GT 97.7 2.1E-05 7.2E-10 48.9 3.3 24 41-64 25-48 (201)
321 2o52_A RAS-related protein RAB 97.7 2.1E-05 7.2E-10 49.1 3.2 26 38-63 23-48 (200)
322 3llu_A RAS-related GTP-binding 97.7 2.2E-05 7.5E-10 48.7 3.2 31 35-65 15-45 (196)
323 1m7b_A RND3/RHOE small GTP-bin 97.7 2.2E-05 7.6E-10 48.1 3.2 23 41-63 8-30 (184)
324 2e87_A Hypothetical protein PH 97.7 1.8E-05 6.1E-10 54.3 3.0 22 43-64 170-191 (357)
325 2dy1_A Elongation factor G; tr 97.7 8.6E-06 2.9E-10 60.6 1.5 31 31-64 3-33 (665)
326 1aky_A Adenylate kinase; ATP:A 97.7 2.7E-05 9.2E-10 49.5 3.6 24 36-62 3-26 (220)
327 3dz8_A RAS-related protein RAB 97.7 1.6E-05 5.6E-10 48.9 2.5 25 39-63 22-46 (191)
328 2h17_A ADP-ribosylation factor 97.7 1.9E-05 6.4E-10 48.3 2.7 22 42-63 23-44 (181)
329 1zuh_A Shikimate kinase; alpha 97.7 2.3E-05 7.9E-10 47.7 3.1 20 43-62 10-29 (168)
330 3ihw_A Centg3; RAS, centaurin, 97.7 1.9E-05 6.4E-10 48.9 2.7 21 41-61 21-41 (184)
331 1qf9_A UMP/CMP kinase, protein 97.7 2.3E-05 7.9E-10 47.9 3.1 18 44-61 10-27 (194)
332 3cph_A RAS-related protein SEC 97.7 2.7E-05 9.2E-10 48.2 3.4 23 41-63 21-43 (213)
333 2q3h_A RAS homolog gene family 97.7 2.7E-05 9.3E-10 48.0 3.4 22 42-63 22-43 (201)
334 2bcg_Y Protein YP2, GTP-bindin 97.7 2.7E-05 9.1E-10 48.4 3.3 25 39-63 7-31 (206)
335 1zd8_A GTP:AMP phosphotransfer 97.7 2.6E-05 9E-10 49.9 3.3 23 36-61 6-28 (227)
336 3cf0_A Transitional endoplasmi 97.7 1.5E-05 5.3E-10 53.3 2.3 29 33-64 45-73 (301)
337 3ake_A Cytidylate kinase; CMP 97.7 2.6E-05 8.8E-10 48.5 3.1 20 43-62 5-24 (208)
338 2zr9_A Protein RECA, recombina 97.7 2.7E-05 9.3E-10 54.0 3.5 26 33-61 57-82 (349)
339 1zd9_A ADP-ribosylation factor 97.7 2.1E-05 7.2E-10 48.4 2.7 23 41-63 23-45 (188)
340 2p5s_A RAS and EF-hand domain 97.7 2.1E-05 7.2E-10 48.8 2.7 23 41-63 29-51 (199)
341 2a5j_A RAS-related protein RAB 97.7 2.1E-05 7.3E-10 48.4 2.7 26 38-63 19-44 (191)
342 1x3s_A RAS-related protein RAB 97.7 3.1E-05 1.1E-09 47.1 3.4 23 41-63 16-38 (195)
343 3bwd_D RAC-like GTP-binding pr 97.7 1.9E-05 6.5E-10 47.6 2.4 21 42-62 10-30 (182)
344 4djt_A GTP-binding nuclear pro 97.7 1.6E-05 5.6E-10 49.7 2.1 23 41-63 12-34 (218)
345 2vli_A Antibiotic resistance p 97.7 2E-05 6.7E-10 48.3 2.5 23 36-61 4-26 (183)
346 2wsm_A Hydrogenase expression/ 97.7 2E-05 6.8E-10 49.6 2.5 21 42-62 32-52 (221)
347 2ohf_A Protein OLA1, GTP-bindi 97.7 2.1E-05 7.3E-10 56.0 2.9 28 33-63 18-45 (396)
348 2atv_A RERG, RAS-like estrogen 97.7 2.2E-05 7.7E-10 48.5 2.7 23 41-63 29-51 (196)
349 2fv8_A H6, RHO-related GTP-bin 97.7 2.1E-05 7.1E-10 49.2 2.5 23 41-63 26-48 (207)
350 2cjw_A GTP-binding protein GEM 97.7 2.2E-05 7.7E-10 48.9 2.7 22 41-62 7-28 (192)
351 1e4v_A Adenylate kinase; trans 97.7 2.5E-05 8.4E-10 49.6 2.9 21 42-62 2-22 (214)
352 4ag6_A VIRB4 ATPase, type IV s 97.7 2.2E-05 7.6E-10 54.1 2.8 25 36-63 34-58 (392)
353 1ukz_A Uridylate kinase; trans 97.7 3.1E-05 1.1E-09 48.4 3.2 18 44-61 19-36 (203)
354 3def_A T7I23.11 protein; chlor 97.7 2.9E-05 9.9E-10 51.0 3.2 24 41-64 37-60 (262)
355 2fu5_C RAS-related protein RAB 97.7 1.7E-05 5.8E-10 48.1 2.0 24 40-63 8-31 (183)
356 1zak_A Adenylate kinase; ATP:A 97.7 2.7E-05 9.3E-10 49.5 3.0 18 44-61 9-26 (222)
357 2pbr_A DTMP kinase, thymidylat 97.7 3E-05 1E-09 47.5 3.1 20 43-62 3-22 (195)
358 3reg_A RHO-like small GTPase; 97.7 3.5E-05 1.2E-09 47.4 3.4 29 36-64 19-47 (194)
359 2j1l_A RHO-related GTP-binding 97.7 3.2E-05 1.1E-09 48.7 3.3 23 41-63 35-57 (214)
360 2ew1_A RAS-related protein RAB 97.7 3.1E-05 1E-09 48.9 3.2 25 38-62 24-48 (201)
361 1wf3_A GTP-binding protein; GT 97.7 3.2E-05 1.1E-09 52.4 3.4 22 43-64 10-31 (301)
362 1j8m_F SRP54, signal recogniti 97.6 9.3E-06 3.2E-10 55.3 0.7 31 30-64 92-122 (297)
363 2cdn_A Adenylate kinase; phosp 97.6 4.1E-05 1.4E-09 47.9 3.6 24 36-62 19-42 (201)
364 2fh5_B SR-beta, signal recogni 97.6 2.3E-05 7.8E-10 49.0 2.4 23 41-63 8-30 (214)
365 2ygr_A Uvrabc system protein A 97.6 3.5E-05 1.2E-09 60.3 3.9 25 30-57 39-63 (993)
366 4dcu_A GTP-binding protein ENG 97.6 2.1E-05 7.1E-10 55.7 2.4 23 41-63 24-46 (456)
367 2r6f_A Excinuclease ABC subuni 97.6 3.6E-05 1.2E-09 60.1 3.9 25 30-57 37-61 (972)
368 2b6h_A ADP-ribosylation factor 97.6 3.5E-05 1.2E-09 47.8 3.1 21 42-62 31-51 (192)
369 1h65_A Chloroplast outer envel 97.6 3.4E-05 1.2E-09 50.8 3.2 25 40-64 39-63 (270)
370 1uj2_A Uridine-cytidine kinase 97.6 3.7E-05 1.3E-09 50.1 3.2 20 43-62 25-44 (252)
371 2w58_A DNAI, primosome compone 97.6 3.4E-05 1.2E-09 48.1 3.0 19 44-62 58-76 (202)
372 2iwr_A Centaurin gamma 1; ANK 97.6 2E-05 6.7E-10 47.6 1.8 23 41-63 8-30 (178)
373 2x77_A ADP-ribosylation factor 97.6 2.8E-05 9.5E-10 47.6 2.5 21 42-62 24-44 (189)
374 2dby_A GTP-binding protein; GD 97.6 2.1E-05 7E-10 55.3 2.1 22 42-63 3-24 (368)
375 1jbk_A CLPB protein; beta barr 97.6 3.7E-05 1.3E-09 46.1 3.0 23 37-62 43-65 (195)
376 2gco_A H9, RHO-related GTP-bin 97.6 3.9E-05 1.3E-09 47.8 3.1 23 41-63 26-48 (201)
377 3tlx_A Adenylate kinase 2; str 97.6 4E-05 1.4E-09 50.1 3.3 23 36-61 28-50 (243)
378 1gwn_A RHO-related GTP-binding 97.6 4.2E-05 1.4E-09 48.3 3.2 24 41-64 29-52 (205)
379 3llm_A ATP-dependent RNA helic 97.6 2.7E-05 9.3E-10 50.2 2.4 24 34-60 73-96 (235)
380 3pih_A Uvrabc system protein A 97.6 2.6E-05 9E-10 60.4 2.6 25 30-57 17-41 (916)
381 2atx_A Small GTP binding prote 97.6 3.2E-05 1.1E-09 47.5 2.5 25 39-63 17-41 (194)
382 3c5c_A RAS-like protein 12; GD 97.6 3.5E-05 1.2E-09 47.5 2.7 22 41-62 22-43 (187)
383 2ius_A DNA translocase FTSK; n 97.6 4.5E-05 1.5E-09 55.9 3.7 31 29-62 159-189 (512)
384 3bos_A Putative DNA replicatio 97.6 5.1E-05 1.8E-09 47.5 3.5 24 36-62 51-74 (242)
385 2xb4_A Adenylate kinase; ATP-b 97.6 4.3E-05 1.5E-09 49.1 3.1 19 43-61 3-21 (223)
386 1fnn_A CDC6P, cell division co 97.6 4E-05 1.4E-09 51.4 3.0 23 39-64 46-68 (389)
387 2hf9_A Probable hydrogenase ni 97.6 4.6E-05 1.6E-09 48.0 3.1 22 41-62 39-60 (226)
388 2yc2_C IFT27, small RAB-relate 97.6 1.5E-05 5.3E-10 49.0 0.7 23 41-63 21-43 (208)
389 2qby_A CDC6 homolog 1, cell di 97.5 5.2E-05 1.8E-09 50.5 3.1 25 36-63 44-68 (386)
390 3cpj_B GTP-binding protein YPT 97.5 6.5E-05 2.2E-09 47.5 3.4 27 38-64 11-37 (223)
391 2g3y_A GTP-binding protein GEM 97.5 6.6E-05 2.3E-09 48.3 3.5 24 40-63 37-60 (211)
392 2f6r_A COA synthase, bifunctio 97.5 5.5E-05 1.9E-09 50.6 3.1 19 43-61 78-96 (281)
393 2hup_A RAS-related protein RAB 97.5 4.6E-05 1.6E-09 47.6 2.5 26 38-63 27-52 (201)
394 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 5.8E-05 2E-09 49.6 3.1 19 44-62 8-26 (260)
395 1xjc_A MOBB protein homolog; s 97.5 6.6E-05 2.2E-09 47.8 3.2 20 44-63 8-27 (169)
396 1v5w_A DMC1, meiotic recombina 97.5 5.7E-05 1.9E-09 51.9 3.1 27 33-62 118-144 (343)
397 2p65_A Hypothetical protein PF 97.5 4E-05 1.4E-09 46.1 2.1 19 44-62 47-65 (187)
398 2grj_A Dephospho-COA kinase; T 97.5 7E-05 2.4E-09 48.0 3.2 20 43-62 15-34 (192)
399 3be4_A Adenylate kinase; malar 97.5 7.2E-05 2.5E-09 47.7 3.2 19 44-62 9-27 (217)
400 3b9p_A CG5977-PA, isoform A; A 97.5 7.8E-05 2.7E-09 49.0 3.5 25 36-63 53-77 (297)
401 2r6a_A DNAB helicase, replicat 97.5 7.9E-05 2.7E-09 52.7 3.6 30 30-62 196-225 (454)
402 3iev_A GTP-binding protein ERA 97.5 6.3E-05 2.2E-09 50.8 3.0 22 43-64 13-34 (308)
403 4gzl_A RAS-related C3 botulinu 97.5 7.3E-05 2.5E-09 46.8 3.1 21 42-62 32-52 (204)
404 2x2e_A Dynamin-1; nitration, h 97.5 5.1E-05 1.7E-09 52.0 2.5 25 41-65 32-56 (353)
405 3q3j_B RHO-related GTP-binding 97.5 6.3E-05 2.2E-09 47.6 2.7 23 41-63 28-50 (214)
406 1a7j_A Phosphoribulokinase; tr 97.5 3.9E-05 1.3E-09 51.8 1.7 23 37-62 5-27 (290)
407 2z43_A DNA repair and recombin 97.5 9.2E-05 3.1E-09 50.2 3.5 27 33-62 103-129 (324)
408 2qz4_A Paraplegin; AAA+, SPG7, 97.4 7.9E-05 2.7E-09 47.7 3.0 25 35-62 37-61 (262)
409 1jal_A YCHF protein; nucleotid 97.4 5.5E-05 1.9E-09 53.2 2.4 22 42-63 4-25 (363)
410 2j0v_A RAC-like GTP-binding pr 97.4 9.4E-05 3.2E-09 46.0 3.2 22 41-62 10-31 (212)
411 3l0i_B RAS-related protein RAB 97.4 2.8E-05 9.4E-10 48.3 0.6 27 38-64 31-57 (199)
412 1ak2_A Adenylate kinase isoenz 97.4 0.00012 4.1E-09 47.1 3.6 23 36-61 15-37 (233)
413 1ltq_A Polynucleotide kinase; 97.4 9.5E-05 3.3E-09 48.7 3.2 20 43-62 5-24 (301)
414 2hjg_A GTP-binding protein ENG 97.4 6.9E-05 2.4E-09 52.7 2.5 23 41-63 4-26 (436)
415 3h4m_A Proteasome-activating n 97.4 0.00012 4E-09 47.8 3.4 26 35-63 49-74 (285)
416 1njg_A DNA polymerase III subu 97.4 9.7E-05 3.3E-09 45.5 2.8 19 44-62 49-67 (250)
417 3gj0_A GTP-binding nuclear pro 97.4 6.9E-05 2.3E-09 47.1 2.2 19 41-59 16-34 (221)
418 4fcw_A Chaperone protein CLPB; 97.4 9.9E-05 3.4E-09 48.5 3.0 21 44-64 51-71 (311)
419 2ce7_A Cell division protein F 97.4 6.9E-05 2.4E-09 54.2 2.3 29 30-63 44-72 (476)
420 2chg_A Replication factor C sm 97.4 0.0001 3.6E-09 45.0 2.8 19 44-62 42-60 (226)
421 3zvl_A Bifunctional polynucleo 97.4 0.00014 4.8E-09 51.1 3.6 27 33-62 254-280 (416)
422 3cnl_A YLQF, putative uncharac 97.4 0.00013 4.6E-09 48.6 3.4 23 43-65 102-124 (262)
423 1l8q_A Chromosomal replication 97.4 0.00011 3.8E-09 49.0 3.0 20 44-63 41-60 (324)
424 3v9p_A DTMP kinase, thymidylat 97.3 0.00011 3.8E-09 48.5 2.8 26 33-61 21-46 (227)
425 2zts_A Putative uncharacterize 97.3 0.00023 7.9E-09 45.0 3.8 24 34-60 27-50 (251)
426 3crm_A TRNA delta(2)-isopenten 97.3 0.00017 5.7E-09 50.2 3.3 20 43-62 8-27 (323)
427 3th5_A RAS-related C3 botulinu 96.4 3.8E-05 1.3E-09 47.7 0.0 21 42-62 32-52 (204)
428 1p5z_B DCK, deoxycytidine kina 97.3 0.00012 4.1E-09 47.9 2.4 28 34-64 21-48 (263)
429 3r7w_A Gtpase1, GTP-binding pr 97.3 0.00024 8.1E-09 47.9 3.9 22 42-63 5-26 (307)
430 1sxj_D Activator 1 41 kDa subu 97.3 0.00014 4.8E-09 48.3 2.8 20 44-63 62-81 (353)
431 4edh_A DTMP kinase, thymidylat 97.3 0.00017 5.8E-09 46.9 3.1 25 35-62 4-28 (213)
432 2ocp_A DGK, deoxyguanosine kin 97.3 0.00016 5.5E-09 46.6 2.9 20 44-63 6-25 (241)
433 3d3q_A TRNA delta(2)-isopenten 97.3 0.00014 4.9E-09 50.8 2.9 20 44-63 11-30 (340)
434 2r62_A Cell division protease 97.3 6.8E-05 2.3E-09 48.6 1.1 19 44-62 48-66 (268)
435 2h92_A Cytidylate kinase; ross 97.3 0.00019 6.3E-09 45.3 3.1 19 44-62 7-25 (219)
436 1wxq_A GTP-binding protein; st 97.3 0.00015 5.3E-09 51.0 3.0 23 42-64 2-24 (397)
437 2z4s_A Chromosomal replication 97.3 0.00014 4.7E-09 51.5 2.7 21 43-63 133-153 (440)
438 3bh0_A DNAB-like replicative h 97.3 0.00023 7.7E-09 48.3 3.6 27 32-61 63-89 (315)
439 2i1q_A DNA repair and recombin 97.3 0.00018 6E-09 48.4 3.0 26 33-61 94-119 (322)
440 1d2n_A N-ethylmaleimide-sensit 97.2 0.00021 7.1E-09 46.7 3.2 21 42-62 66-86 (272)
441 3lv8_A DTMP kinase, thymidylat 97.2 0.00022 7.4E-09 47.3 3.4 26 34-62 24-49 (236)
442 4tmk_A Protein (thymidylate ki 97.2 0.00025 8.6E-09 46.2 3.4 24 36-62 2-25 (213)
443 1mky_A Probable GTP-binding pr 97.2 0.0002 6.9E-09 50.3 3.2 24 41-64 2-25 (439)
444 3sjy_A Translation initiation 97.2 0.00019 6.7E-09 49.9 3.1 22 42-63 10-31 (403)
445 2hjg_A GTP-binding protein ENG 97.2 0.00024 8.1E-09 49.9 3.4 25 41-65 176-200 (436)
446 3syl_A Protein CBBX; photosynt 97.2 0.0002 6.9E-09 47.0 2.8 19 44-62 71-89 (309)
447 1ypw_A Transitional endoplasmi 97.2 5.9E-05 2E-09 57.2 0.3 31 31-64 505-535 (806)
448 3n70_A Transport activator; si 97.2 0.00023 7.8E-09 42.9 2.8 20 44-63 28-47 (145)
449 3tmk_A Thymidylate kinase; pho 97.2 0.00028 9.6E-09 46.2 3.4 25 35-62 3-27 (216)
450 3sr0_A Adenylate kinase; phosp 97.2 0.00024 8.1E-09 46.0 3.0 19 43-61 3-21 (206)
451 3umf_A Adenylate kinase; rossm 97.2 0.00019 6.6E-09 47.1 2.6 26 33-61 25-50 (217)
452 3kl4_A SRP54, signal recogniti 97.2 0.00017 5.7E-09 51.8 2.4 25 36-63 96-120 (433)
453 1ofh_A ATP-dependent HSL prote 97.2 0.00022 7.6E-09 46.5 2.8 19 44-62 54-72 (310)
454 1puj_A YLQF, conserved hypothe 97.2 0.00027 9.1E-09 47.6 3.2 22 43-64 123-144 (282)
455 1sky_E F1-ATPase, F1-ATP synth 97.2 0.00031 1.1E-08 51.2 3.7 28 32-62 146-173 (473)
456 2j69_A Bacterial dynamin-like 97.1 0.00028 9.7E-09 52.7 3.4 23 42-64 71-93 (695)
457 3geh_A MNME, tRNA modification 97.1 0.00021 7.2E-09 51.3 2.5 21 43-63 227-247 (462)
458 3eie_A Vacuolar protein sortin 97.1 0.00027 9.1E-09 47.6 2.9 20 43-62 54-73 (322)
459 2qpt_A EH domain-containing pr 97.1 0.00023 7.7E-09 52.0 2.7 24 41-64 66-89 (550)
460 3hws_A ATP-dependent CLP prote 97.1 0.00027 9.2E-09 48.1 2.8 20 44-63 55-74 (363)
461 3a8t_A Adenylate isopentenyltr 97.1 0.0003 1E-08 49.3 3.1 25 37-64 40-64 (339)
462 3dpu_A RAB family protein; roc 97.1 0.00034 1.2E-08 50.2 3.4 24 41-64 42-65 (535)
463 3p32_A Probable GTPase RV1496/ 97.1 0.00034 1.2E-08 48.0 3.3 20 43-62 82-101 (355)
464 2v1u_A Cell division control p 97.1 0.00027 9.3E-09 47.1 2.7 25 35-62 42-66 (387)
465 3o47_A ADP-ribosylation factor 97.1 0.00029 9.9E-09 48.0 2.9 22 42-63 167-188 (329)
466 1ko7_A HPR kinase/phosphatase; 97.1 0.00072 2.5E-08 46.9 4.9 29 30-62 138-166 (314)
467 3ld9_A DTMP kinase, thymidylat 97.1 0.00033 1.1E-08 46.1 3.1 26 34-62 18-43 (223)
468 3pfi_A Holliday junction ATP-d 97.1 0.00028 9.6E-09 47.1 2.8 21 43-63 58-78 (338)
469 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.00032 1.1E-08 47.6 3.0 20 44-63 49-68 (322)
470 1lnz_A SPO0B-associated GTP-bi 97.1 0.0002 6.8E-09 49.6 1.9 23 41-63 159-181 (342)
471 3gee_A MNME, tRNA modification 97.1 0.00031 1.1E-08 50.6 2.9 22 43-64 236-257 (476)
472 3t15_A Ribulose bisphosphate c 97.0 0.00035 1.2E-08 46.7 2.9 19 44-62 40-58 (293)
473 1kk1_A EIF2gamma; initiation o 97.0 0.00042 1.4E-08 48.2 3.4 27 38-64 8-34 (410)
474 3d8b_A Fidgetin-like protein 1 97.0 0.00039 1.3E-08 47.6 3.0 20 44-63 121-140 (357)
475 3c5h_A Glucocorticoid receptor 97.0 0.00048 1.6E-08 45.0 3.3 22 41-62 20-50 (255)
476 2qgz_A Helicase loader, putati 97.0 0.00039 1.3E-08 47.1 3.0 23 37-62 152-174 (308)
477 2qmh_A HPR kinase/phosphorylas 97.0 0.00058 2E-08 45.1 3.7 25 35-62 32-56 (205)
478 1u94_A RECA protein, recombina 97.0 0.00057 2E-08 47.6 3.7 25 34-61 60-84 (356)
479 3exa_A TRNA delta(2)-isopenten 97.0 0.00044 1.5E-08 48.3 3.1 19 44-62 7-25 (322)
480 2wkq_A NPH1-1, RAS-related C3 97.0 0.00047 1.6E-08 45.3 3.1 21 42-62 157-177 (332)
481 1um8_A ATP-dependent CLP prote 97.0 0.00041 1.4E-08 47.3 2.8 20 44-63 76-95 (376)
482 3co5_A Putative two-component 97.0 0.00035 1.2E-08 42.0 2.2 20 44-63 31-50 (143)
483 3foz_A TRNA delta(2)-isopenten 97.0 0.00044 1.5E-08 48.2 2.9 19 44-62 14-32 (316)
484 2qp9_X Vacuolar protein sortin 97.0 0.00044 1.5E-08 47.4 2.8 19 44-62 88-106 (355)
485 3pvs_A Replication-associated 96.9 0.00047 1.6E-08 49.2 3.0 31 33-64 44-74 (447)
486 2q6t_A DNAB replication FORK h 96.9 0.00056 1.9E-08 48.2 3.3 26 33-61 196-221 (444)
487 2c78_A Elongation factor TU-A; 96.9 0.00043 1.5E-08 48.1 2.7 22 41-62 12-33 (405)
488 3tr5_A RF-3, peptide chain rel 96.9 0.00051 1.7E-08 50.0 3.1 21 41-61 14-34 (528)
489 3uk6_A RUVB-like 2; hexameric 96.9 0.00063 2.2E-08 45.7 3.3 24 37-63 70-93 (368)
490 1hqc_A RUVB; extended AAA-ATPa 96.9 0.00037 1.3E-08 46.0 2.1 19 44-62 42-60 (324)
491 4hlc_A DTMP kinase, thymidylat 96.9 0.00058 2E-08 44.0 2.9 23 37-62 2-24 (205)
492 3gmt_A Adenylate kinase; ssgci 96.9 0.0006 2E-08 45.4 3.1 19 43-61 11-29 (230)
493 1s0u_A EIF-2-gamma, translatio 96.9 0.00067 2.3E-08 47.3 3.4 24 41-64 9-32 (408)
494 3pxg_A Negative regulator of g 96.9 0.0005 1.7E-08 48.9 2.7 22 42-63 203-224 (468)
495 1zcb_A G alpha I/13; GTP-bindi 96.9 0.00059 2E-08 47.6 3.0 20 42-61 35-54 (362)
496 2orw_A Thymidine kinase; TMTK, 96.9 0.00085 2.9E-08 42.4 3.4 22 36-60 2-24 (184)
497 2qby_B CDC6 homolog 3, cell di 96.9 0.00081 2.8E-08 45.1 3.5 19 44-62 49-67 (384)
498 2bjv_A PSP operon transcriptio 96.9 0.00064 2.2E-08 44.0 2.9 21 44-64 33-53 (265)
499 3ec1_A YQEH GTPase; atnos1, at 96.9 0.00047 1.6E-08 47.9 2.3 25 36-63 161-185 (369)
500 4a1f_A DNAB helicase, replicat 96.9 0.00078 2.7E-08 46.9 3.4 26 33-61 42-67 (338)
No 1
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.83 E-value=1e-20 Score=124.68 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=52.8
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++++++|++ ..++++ +||++++||++ +|+||||||||||+++|+|+++|++
T Consensus 1 m~~~l~~~~l~~~y~~-~~~l~~------vsl~i~~Ge~~---~iiG~nGsGKSTLl~~l~Gl~~p~~ 58 (224)
T 2pcj_A 1 MAEILRAENIKKVIRG-YEILKG------ISLSVKKGEFV---SIIGASGSGKSTLLYILGLLDAPTE 58 (224)
T ss_dssp -CEEEEEEEEEEEETT-EEEEEE------EEEEEETTCEE---EEEECTTSCHHHHHHHHTTSSCCSE
T ss_pred CCcEEEEEeEEEEECC-EeeEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCc
Confidence 6778999999999987 567777 99999999999 9999999999999999999999863
No 2
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.81 E-value=4.9e-20 Score=124.65 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=52.0
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+.+++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+++|++
T Consensus 21 m~~~l~i~~l~~~y~~-~~vL~~------vsl~i~~Gei~---~liG~NGsGKSTLlk~l~Gl~~p~~ 78 (263)
T 2olj_A 21 MLQMIDVHQLKKSFGS-LEVLKG------INVHIREGEVV---VVIGPSGSGKSTFLRCLNLLEDFDE 78 (263)
T ss_dssp -CCSEEEEEEEEEETT-EEEEEE------EEEEECTTCEE---EEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred chheEEEEeEEEEECC-EEEEEe------eEEEEcCCCEE---EEEcCCCCcHHHHHHHHHcCCCCCC
Confidence 4457999999999986 567777 99999999999 9999999999999999999999863
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.81 E-value=4.5e-20 Score=130.15 Aligned_cols=58 Identities=29% Similarity=0.393 Sum_probs=52.1
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+++|++++++++|++ ..++++ +||++++||++ +|+||||||||||||+|+|+++|++
T Consensus 1 M~~~l~i~~ls~~y~~-~~~L~~------vsl~i~~Ge~~---~llGpsGsGKSTLLr~iaGl~~p~~ 58 (359)
T 3fvq_A 1 MTAALHIGHLSKSFQN-TPVLND------ISLSLDPGEIL---FIIGASGCGKTTLLRCLAGFEQPDS 58 (359)
T ss_dssp --CCEEEEEEEEEETT-EEEEEE------EEEEECTTCEE---EEEESTTSSHHHHHHHHHTSSCCSE
T ss_pred CCcEEEEEeEEEEECC-EEEEEe------eEEEEcCCCEE---EEECCCCchHHHHHHHHhcCCCCCC
Confidence 6678999999999987 567777 99999999999 9999999999999999999999973
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.81 E-value=7.8e-20 Score=124.42 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=51.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++++|++...++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~------isl~i~~Ge~~---~iiGpnGsGKSTLl~~l~Gl~~p~~ 62 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKG------INMNIKRGEVT---AILGGNGVGKSTLFQNFNGILKPSS 62 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEE------EEEEEETTSEE---EEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred cEEEEEEEEEEECCCCeEEEe------eEEEEcCCCEE---EEECCCCCCHHHHHHHHHcCCCCCC
Confidence 379999999999765557777 99999999999 9999999999999999999999863
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.80 E-value=1.3e-19 Score=121.99 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=51.0
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+++|++
T Consensus 6 ~l~i~~l~~~y~~-~~vl~~------vsl~i~~Ge~~---~liG~nGsGKSTLlk~l~Gl~~p~~ 60 (262)
T 1b0u_A 6 KLHVIDLHKRYGG-HEVLKG------VSLQARAGDVI---SIIGSSGSGKSTFLRCINFLEKPSE 60 (262)
T ss_dssp CEEEEEEEEEETT-EEEEEE------EEEEECTTCEE---EEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred eEEEeeEEEEECC-EEEEEe------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 7999999999986 567777 99999999999 9999999999999999999999863
No 6
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.80 E-value=1.3e-19 Score=121.66 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=52.3
Q ss_pred CcceEEEeceeEEcc-CceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMR-QAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~-~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+++++++++++.|+ + ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 M~~~l~i~~l~~~y~~~-~~vl~~------isl~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~p~~ 59 (253)
T 2nq2_C 1 MNKALSVENLGFYYQAE-NFLFQQ------LNFDLNKGDIL---AVLGQNGCGKSTLLDLLLGIHRPIQ 59 (253)
T ss_dssp -CEEEEEEEEEEEETTT-TEEEEE------EEEEEETTCEE---EEECCSSSSHHHHHHHHTTSSCCSE
T ss_pred CCceEEEeeEEEEeCCC-CeEEEE------EEEEECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 667899999999998 5 457777 99999999999 9999999999999999999999863
No 7
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.79 E-value=1.5e-19 Score=121.10 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=51.4
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+++|++
T Consensus 6 ~~l~i~~l~~~y~~-~~vl~~------vsl~i~~Ge~~---~liG~nGsGKSTLlk~l~Gl~~p~~ 61 (257)
T 1g6h_A 6 EILRTENIVKYFGE-FKALDG------VSISVNKGDVT---LIIGPNGSGKSTLINVITGFLKADE 61 (257)
T ss_dssp EEEEEEEEEEEETT-EEEEEE------ECCEEETTCEE---EEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred cEEEEeeeEEEECC-EeeEee------eEEEEeCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 47999999999986 567777 99999999999 9999999999999999999999863
No 8
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.79 E-value=2.4e-19 Score=119.17 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=51.5
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 5 ~~l~~~~l~~~y~~-~~vl~~------vsl~i~~Ge~~---~l~G~nGsGKSTLl~~l~Gl~~p~~ 60 (240)
T 1ji0_A 5 IVLEVQSLHVYYGA-IHAIKG------IDLKVPRGQIV---TLIGANGAGKTTTLSAIAGLVRAQK 60 (240)
T ss_dssp EEEEEEEEEEEETT-EEEEEE------EEEEEETTCEE---EEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred ceEEEEeEEEEECC-eeEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 37999999999987 567777 99999999999 9999999999999999999999863
No 9
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.79 E-value=1.4e-19 Score=119.65 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=52.6
Q ss_pred CcceEEEeceeEEccC-ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQ-AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~-~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+.+++++++++.|+. ...++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 3 ~~~~l~~~~l~~~y~~~~~~il~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 62 (229)
T 2pze_A 3 TTTEVVMENVTAFWEEGGTPVLKD------INFKIERGQLL---AVAGSTGAGKTSLLMMIMGELEPSE 62 (229)
T ss_dssp CCEEEEEEEEEECSSTTSCCSEEE------EEEEEETTCEE---EEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred ccceEEEEEEEEEeCCCCceeeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCcCCc
Confidence 6678999999999963 3456777 99999999999 9999999999999999999999863
No 10
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.79 E-value=3.6e-19 Score=120.27 Aligned_cols=56 Identities=32% Similarity=0.339 Sum_probs=51.6
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+++|++
T Consensus 10 ~~l~~~~l~~~~~~-~~vL~~------vsl~i~~Ge~~---~liG~nGsGKSTLl~~l~Gl~~p~~ 65 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ-QALIND------VSLHIASGEMV---AIIGPNGAGKSTLLRLLTGYLSPSH 65 (266)
T ss_dssp CEEEEEEEEEEETT-EEEEEE------EEEEEETTCEE---EEECCTTSCHHHHHHHHTSSSCCSS
T ss_pred ceEEEEeEEEEeCC-eeEEEe------eEEEEcCCCEE---EEECCCCCcHHHHHHHHhcCCCCCC
Confidence 37999999999987 567777 99999999999 9999999999999999999999874
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.79 E-value=2.3e-19 Score=119.02 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=50.2
Q ss_pred eEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++|+.. ..++++ +||++++||++ +|+||||||||||+++|+|+++|++
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~------isl~i~~Ge~~---~iiG~nGsGKSTLl~~l~Gl~~p~~ 59 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKN------VNLNIKEGEFV---SIMGPSGSGKSTMLNIIGCLDKPTE 59 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEE------EEEEECTTCEE---EEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CEEEEEEEEEeCCCCcceeeEEe------eeEEEcCCCEE---EEECCCCCcHHHHHHHHhcCCCCCc
Confidence 57899999999742 347777 99999999999 9999999999999999999999873
No 12
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.78 E-value=4e-19 Score=120.85 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=51.4
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+++|++
T Consensus 20 ~~l~~~~l~~~y~~-~~vL~~------isl~i~~Ge~~---~liG~NGsGKSTLlk~l~Gl~~p~~ 75 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG-KTILKK------ISWQIAKGDKW---ILYGLNGAGKTTLLNILNAYEPATS 75 (279)
T ss_dssp EEEEEEEEEEEETT-EEEEEE------EEEEEETTCEE---EEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred ceEEEEeEEEEECC-EEEEEe------eeEEEcCCCEE---EEECCCCCcHHHHHHHHhCCCCCCC
Confidence 47999999999986 567777 99999999999 9999999999999999999999873
No 13
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.78 E-value=4.4e-19 Score=119.45 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=51.4
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 14 ~~l~i~~l~~~y~~-~~vl~~------vsl~i~~Gei~---~l~G~NGsGKSTLlk~l~Gl~~p~~ 69 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK-KEILKG------ISFEIEEGEIF---GLIGPNGAGKTTTLRIISTLIKPSS 69 (256)
T ss_dssp CCEEEEEEEEEETT-EEEEEE------EEEEECTTCEE---EEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CeEEEEEEEEEECC-EEEEEe------eEEEEcCCcEE---EEECCCCCCHHHHHHHHhcCCCCCc
Confidence 57899999999986 567777 99999999999 9999999999999999999999863
No 14
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.77 E-value=8.7e-19 Score=115.58 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=50.7
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+|+++++++.|++ .++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 9 ~~l~~~~ls~~y~~--~il~~------vsl~i~~Ge~~---~iiG~NGsGKSTLlk~l~Gl~~p~~ 63 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK--PVLER------ITMTIEKGNVV---NFHGPNGIGKTTLLKTISTYLKPLK 63 (214)
T ss_dssp CEEEEEEEEEESSS--EEEEE------EEEEEETTCCE---EEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred ceEEEEEEEEEeCC--eEEee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 47899999999986 57777 99999999999 9999999999999999999999863
No 15
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.77 E-value=6.7e-19 Score=117.56 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=49.4
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC--CCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH--PVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl--~~~~ 67 (68)
+++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|+ .+|+
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~------vsl~i~~Ge~~---~l~G~nGsGKSTLlk~l~Gl~~~~p~ 58 (250)
T 2d2e_A 3 QLEIRDLWASIDG-ETILKG------VNLVVPKGEVH---ALMGPNGAGKSTLGKILAGDPEYTVE 58 (250)
T ss_dssp EEEEEEEEEEETT-EEEEEE------EEEEEETTCEE---EEECSTTSSHHHHHHHHHTCTTCEEE
T ss_pred eEEEEeEEEEECC-EEEEec------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 7999999999986 567777 99999999999 99999999999999999998 6664
No 16
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.77 E-value=7.5e-19 Score=124.73 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=51.0
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+|++++++++|++ ..++++ +||++++||++ +|+||||||||||||+|+|+++|++
T Consensus 3 ~l~~~~l~~~yg~-~~~L~~------vsl~i~~Ge~~---~llGpsGsGKSTLLr~iaGl~~p~~ 57 (381)
T 3rlf_A 3 SVQLQNVTKAWGE-VVVSKD------INLDIHEGEFV---VFVGPSGCGKSTLLRMIAGLETITS 57 (381)
T ss_dssp CEEEEEEEEEETT-EEEEEE------EEEEECTTCEE---EEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEEeEEEEECC-EEEEee------eEEEECCCCEE---EEEcCCCchHHHHHHHHHcCCCCCC
Confidence 6899999999987 567777 99999999999 9999999999999999999999973
No 17
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.77 E-value=7.9e-19 Score=123.54 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=50.8
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++|++ ..++++ +||++++||++ +|+||||||||||||+|+|+++|++
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~------vsl~i~~Ge~~---~llGpnGsGKSTLLr~iaGl~~p~~ 57 (359)
T 2yyz_A 3 SIRVVNLKKYFGK-VKAVDG------VSFEVKDGEFV---ALLGPSGCGKTTTLLMLAGIYKPTS 57 (359)
T ss_dssp CEEEEEEEEEETT-EEEEEE------EEEEECTTCEE---EEECSTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEEEEEEEECC-EEEEee------eEEEEcCCCEE---EEEcCCCchHHHHHHHHHCCCCCCc
Confidence 6899999999986 567777 99999999999 9999999999999999999999873
No 18
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.77 E-value=9.1e-19 Score=123.50 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=50.9
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++|++ ..++++ +||++++||++ +|+||||||||||||+|+|+++|++
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~------vsl~i~~Ge~~---~llGpnGsGKSTLLr~iaGl~~p~~ 57 (372)
T 1g29_1 3 GVRLVDVWKVFGE-VTAVRE------MSLEVKDGEFM---ILLGPSGCGKTTTLRMIAGLEEPSR 57 (372)
T ss_dssp EEEEEEEEEEETT-EEEEEE------EEEEEETTCEE---EEECSTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEEeEEEEECC-EEEEee------eEEEEcCCCEE---EEECCCCcHHHHHHHHHHcCCCCCc
Confidence 7899999999986 567777 99999999999 9999999999999999999999873
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.77 E-value=7.9e-19 Score=124.19 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=51.2
Q ss_pred cceEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 2 EAIEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++|+++++++.|+.+ ..++++ +||++++||++ +|+||||||||||+|+|+|+++|++
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~------vsl~i~~Gei~---~IiGpnGaGKSTLlr~i~GL~~p~~ 82 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNN------VSLHVPAGQIY---GVIGASGAGKSTLIRCVNLLERPTE 82 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEE------EEEEECTTCEE---EEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEe------eEEEEcCCCEE---EEEcCCCchHHHHHHHHhcCCCCCc
Confidence 4589999999999742 346777 99999999999 9999999999999999999999973
No 20
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.77 E-value=4e-19 Score=118.03 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=49.9
Q ss_pred eEEEeceeEEccC-ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQ-AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~-~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++++++++.|+. ...++++ +||++++|+++ +|+||||||||||+++|+|+++|+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~ 58 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNG------ITFSIPEGALV---AVVGQVGCGKSSLLSALLAEMDKV 58 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEE------EEEEECTTCEE---EEECSTTSSHHHHHHHHTTCSEEE
T ss_pred eEEEEEEEEEeCCCCCceeee------eEEEECCCCEE---EEECCCCCCHHHHHHHHhcCCCCC
Confidence 6899999999973 2456777 99999999999 999999999999999999999886
No 21
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.76 E-value=5.8e-19 Score=117.30 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=49.7
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|++...++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ml~~~~l~~~y~~~~~vl~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 56 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRD------ISFEAQPNSII---AFAGPSGGGKSTIFSLLERFYQPTA 56 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEE------EEEEECTTEEE---EEECCTTSSHHHHHHHHTTSSCCSB
T ss_pred CEEEEEEEEEeCCCCceEEE------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 47899999999432456777 99999999999 9999999999999999999999863
No 22
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.76 E-value=1.1e-18 Score=122.85 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=50.6
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++|++ ..++++ +||++++||++ +|+||||||||||||+|+|+++|++
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~------vsl~i~~Ge~~---~llGpnGsGKSTLLr~iaGl~~p~~ 57 (362)
T 2it1_A 3 EIKLENIVKKFGN-FTALNN------INLKIKDGEFM---ALLGPSGSGKSTLLYTIAGIYKPTS 57 (362)
T ss_dssp CEEEEEEEEESSS-SEEEEE------EEEEECTTCEE---EEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEEeEEEEECC-EEEEEe------eEEEECCCCEE---EEECCCCchHHHHHHHHhcCCCCCc
Confidence 6899999999986 457777 99999999999 9999999999999999999999873
No 23
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.76 E-value=1.3e-18 Score=122.86 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=50.7
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++|++ ..++++ +||++++||++ +|+||||||||||||+|+|+++|++
T Consensus 11 ~l~~~~l~~~y~~-~~vl~~------vsl~i~~Ge~~---~llGpnGsGKSTLLr~iaGl~~p~~ 65 (372)
T 1v43_A 11 EVKLENLTKRFGN-FTAVNK------LNLTIKDGEFL---VLLGPSGCGKTTTLRMIAGLEEPTE 65 (372)
T ss_dssp CEEEEEEEEEETT-EEEEEE------EEEEECTTCEE---EEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred eEEEEEEEEEECC-EEEEee------eEEEECCCCEE---EEECCCCChHHHHHHHHHcCCCCCc
Confidence 5899999999986 567777 99999999999 9999999999999999999999873
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.76 E-value=1.6e-18 Score=116.75 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=50.4
Q ss_pred eEEEeceeEEcc-Cc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMR-QA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~-~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++|+ +. ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~------vsl~i~~Ge~~---~liG~nGsGKSTLl~~i~Gl~~p~~ 61 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALEN------VSLVINEGECL---LVAGNTGSGKSTLLQIVAGLIEPTS 61 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEE------EEEEECTTCEE---EEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEEEEEEEEecCCCccccceeee------eEEEEcCCCEE---EEECCCCCcHHHHHHHHhCCCCCCC
Confidence 689999999997 22 457777 99999999999 9999999999999999999999863
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.76 E-value=9.2e-19 Score=118.41 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=50.9
Q ss_pred ceEEEeceeEEccC--ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQ--AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~--~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ...++++ +||++++|+++ +|+||||||||||+++|+|+++|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~------vsl~i~~Ge~~---~i~G~nGsGKSTLlk~l~Gl~~p~~ 73 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQG------LTFTLYPGKVT---ALVGPNGSGKSTVAALLQNLYQPTG 73 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEE------EEEEECTTCEE---EEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred ceEEEEEEEEEeCCCCCceeeEe------eEEEECCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 47999999999975 1356777 99999999999 9999999999999999999999863
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.76 E-value=1.7e-18 Score=115.74 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=49.7
Q ss_pred eEEEeceeEEc-cCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSM-RQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~-~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
-+++++++++| ++...++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 63 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDN------INLSIKQGEVI---GIVGRSGSGKSTLTKLIQRFYIPEN 63 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEE------EEEEEETTCEE---EEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred ceeEEEEEEEeCCCCcceeee------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 47899999999 323567777 99999999999 9999999999999999999999863
No 27
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.75 E-value=6.8e-19 Score=123.38 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=50.5
Q ss_pred eEEEeceeEEccCceE-EeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAA-LLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~-~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++++++|++... ++++ +||++++||++ +|+||||||||||||+|+|+++|++
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~------vsl~i~~Ge~~---~llGpnGsGKSTLLr~iaGl~~p~~ 59 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDN------VNINIENGERF---GILGPSGAGKTTFMRIIAGLDVPST 59 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEE------EEEEECTTCEE---EEECSCHHHHHHHHHHHHTSSCCSE
T ss_pred EEEEEeEEEEECCEeeeeEec------eEEEECCCCEE---EEECCCCCcHHHHHHHHhCCCCCCc
Confidence 6899999999986431 6777 99999999999 9999999999999999999999873
No 28
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.75 E-value=1.4e-18 Score=122.14 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=50.7
Q ss_pred ceEEEeceeEEc-cCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSM-RQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~-~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++++| ++ ..++++ +||++++||++ +|+||||||||||||+|+|+++|++
T Consensus 13 ~~l~~~~l~~~y~g~-~~vl~~------vsl~i~~Ge~~---~llGpnGsGKSTLLr~iaGl~~p~~ 69 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG-ARSVRG------VSFQIREGEMV---GLLGPSGSGKTTILRLIAGLERPTK 69 (355)
T ss_dssp EEEEEEEEEECCTTS-TTCEEE------EEEEEETTCEE---EEECSTTSSHHHHHHHHHTSSCCSE
T ss_pred ceEEEEEEEEEEcCC-CEEEee------eEEEECCCCEE---EEECCCCCcHHHHHHHHhCCCCCCc
Confidence 579999999999 65 346677 99999999999 9999999999999999999999873
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.75 E-value=2.5e-18 Score=115.94 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=47.5
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++++++++.|++ ..++++ +||++++||++ +|+||||||||||+++|+|++
T Consensus 19 ~~l~~~~l~~~y~~-~~vl~~------vsl~i~~Ge~~---~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 19 HMLSIKDLHVSVED-KAILRG------LSLDVHPGEVH---AIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp -CEEEEEEEEEETT-EEEEEE------EEEEECTTCEE---EEECCTTSSHHHHHHHHHTCT
T ss_pred ceEEEEeEEEEECC-EEEEEe------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCC
Confidence 47999999999976 567777 99999999999 999999999999999999994
No 30
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.74 E-value=1.8e-18 Score=121.17 Aligned_cols=54 Identities=31% Similarity=0.381 Sum_probs=49.8
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+++++++++|++ . ++++ +||++++||++ +|+||||||||||||+|+|+++|++
T Consensus 1 ml~~~~l~~~y~~-~-~l~~------vsl~i~~Ge~~---~llGpnGsGKSTLLr~iaGl~~p~~ 54 (348)
T 3d31_A 1 MIEIESLSRKWKN-F-SLDN------LSLKVESGEYF---VILGPTGAGKTLFLELIAGFHVPDS 54 (348)
T ss_dssp CEEEEEEEEECSS-C-EEEE------EEEEECTTCEE---EEECCCTHHHHHHHHHHHTSSCCSE
T ss_pred CEEEEEEEEEECC-E-EEee------eEEEEcCCCEE---EEECCCCccHHHHHHHHHcCCCCCC
Confidence 4789999999987 4 7777 99999999999 9999999999999999999999873
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.73 E-value=4.8e-18 Score=117.31 Aligned_cols=56 Identities=27% Similarity=0.261 Sum_probs=51.1
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.|++++|+++|+....++++ +||++++|+++ +|+||||||||||+++|+|+++|++
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~------isl~i~~Ge~v---aivG~sGsGKSTLl~ll~gl~~p~~ 108 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQD------VSFTVMPGQTL---ALVGPSGAGKSTILRLLFRFYDISS 108 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEE------EEEEECTTCEE---EEESSSCHHHHHHHHHHTTSSCCSE
T ss_pred eEEEEEEEEEcCCCCceeee------eeEEEcCCCEE---EEECCCCchHHHHHHHHHcCCCCCC
Confidence 48999999999754567888 99999999999 9999999999999999999999863
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.72 E-value=6.1e-18 Score=113.47 Aligned_cols=53 Identities=26% Similarity=0.358 Sum_probs=47.5
Q ss_pred CcceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 1 MEAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 1 m~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
|+.+++++++++. .++++ +||++++||++ +|+||||||||||+++|+|+.+|+
T Consensus 1 M~~~l~~~~l~~~-----~vl~~------vsl~i~~Ge~~---~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 1 MSIVMQLQDVAES-----TRLGP------LSGEVRAGEIL---HLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp -CEEEEEEEEEET-----TTEEE------EEEEEETTCEE---EEECCTTSSHHHHHHHHTTSSCCE
T ss_pred CCcEEEEEceEEE-----EEEee------eEEEEcCCCEE---EEECCCCCcHHHHHHHHhCCCCCC
Confidence 6778999999986 35666 99999999999 999999999999999999999874
No 33
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.71 E-value=1.2e-17 Score=111.45 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=47.2
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|+++++++++|+. ++++ +||++++ |++ +|+||||||||||+++|+|+.+|++
T Consensus 1 ml~~~~l~~~y~~---~l~~------isl~i~~-e~~---~liG~nGsGKSTLl~~l~Gl~~p~~ 52 (240)
T 2onk_A 1 MFLKVRAEKRLGN---FRLN------VDFEMGR-DYC---VLLGPTGAGKSVFLELIAGIVKPDR 52 (240)
T ss_dssp CCEEEEEEEEETT---EEEE------EEEEECS-SEE---EEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred CEEEEEEEEEeCC---EEee------eEEEECC-EEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 4789999999975 3666 9999999 999 9999999999999999999999863
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.71 E-value=1.3e-17 Score=112.14 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=49.0
Q ss_pred ceEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 3 AIEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.+++++++++.|++. ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~------vsl~i~~Ge~~---~i~G~nGsGKSTLl~~l~Gl~~~ 72 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKS------INFFIPSGTTC---ALVGHTGSGKSTIAKLLYRFYDA 72 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEE------EEEEECTTCEE---EEECSTTSSHHHHHHHHTTSSCC
T ss_pred CeEEEEEEEEEeCCCCcCceeEe------eEEEECCCCEE---EEECCCCCCHHHHHHHHhccCCC
Confidence 368999999999753 246777 99999999999 99999999999999999999875
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.71 E-value=1.6e-17 Score=112.35 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=48.2
Q ss_pred eEEEeceeEEccCc---eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA---AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~---~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++++++++.|++. ..++++ +||+++ |+++ +|+||||||||||+++|+|+. |++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~------vsl~i~-Ge~~---~i~G~NGsGKSTLlk~l~Gl~-p~~ 57 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLEN------INLEVN-GEKV---IILGPNGSGKTTLLRAISGLL-PYS 57 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEE------EEEEEC-SSEE---EEECCTTSSHHHHHHHHTTSS-CCE
T ss_pred CEEEEEEEEEeCCCCccceeEEe------eeEEEC-CEEE---EEECCCCCCHHHHHHHHhCCC-CCC
Confidence 47899999999752 457777 999999 9999 999999999999999999999 863
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.67 E-value=5.7e-17 Score=115.08 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=47.7
Q ss_pred ceEEEeceeEEccC-ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 3 AIEELSQLSDSMRQ-AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 3 ~~l~~~~v~~~~~~-~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
..|++++++++|+. ...++++ +||++++||++ +|+|||||||||||++|+|++.
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~------vsl~i~~Ge~~---~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILEN------ISFSISPGQRV---GLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEE------EEEEECTTCEE---EEEESTTSSHHHHHHHHHTCSE
T ss_pred CeEEEEEEEEEecCCCeEEeec------eeEEEcCCCEE---EEECCCCChHHHHHHHHhCCCC
Confidence 36899999999942 2456777 99999999999 9999999999999999999975
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.64 E-value=2.5e-16 Score=114.82 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=50.5
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++|++++|++. ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~------i~l~i~~G~~~---~ivG~sGsGKSTll~~l~g~~~p~~ 397 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSH------VSFSIPQGKTV---ALVGRSGSGKSTIANLFTRFYDVDS 397 (582)
T ss_pred eEEEEEEEEEcCCCCcccccc------ceEEECCCCEE---EEECCCCCCHHHHHHHHhcCCCCCC
Confidence 68999999999752 456766 99999999999 9999999999999999999999974
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.64 E-value=2.1e-16 Score=115.21 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=50.6
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++|++++|++. ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~------v~~~i~~G~~~---~ivG~sGsGKSTLl~~l~g~~~p~~ 397 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRN------INLKIPAGKTV---ALVGRSGSGKSTIASLITRFYDIDE 397 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEE------EEEEECTTCEE---EEEECTTSSHHHHHHHHTTTTCCSE
T ss_pred cEEEEEEEEEcCCCCCccccc------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhhccCCCC
Confidence 68999999999743 457777 99999999999 9999999999999999999999873
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.63 E-value=4.2e-16 Score=113.87 Aligned_cols=55 Identities=25% Similarity=0.222 Sum_probs=50.0
Q ss_pred EEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 5 EELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 5 l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++|++++|+++ ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~------isl~i~~G~~~---~ivG~sGsGKSTLl~~l~g~~~p~~ 398 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQD------FSLSIPSGSVT---ALVGPSGSGKSTVLSLLLRLYDPAS 398 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEE------EEEEECTTCEE---EEECCTTSSSTHHHHHHTTSSCCSE
T ss_pred EEEEEEEEEeCCCCCCccccc------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhcCcCCCC
Confidence 8999999999753 357777 99999999999 9999999999999999999999873
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.62 E-value=2.2e-16 Score=115.70 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=50.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|++...++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~------isl~i~~G~~~---~ivG~sGsGKSTll~~l~g~~~p~~ 409 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKD------ITFHIKPGQKV---ALVGPTGSGKTTIVNLLMRFYDVDR 409 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCS------EEEECCTTCEE---EEECCTTSSTTHHHHHHTTSSCCSE
T ss_pred eEEEEEEEEECCCCCccccc------eEEEEcCCCEE---EEECCCCCcHHHHHHHHhcCcCCCC
Confidence 48999999999764556766 99999999999 9999999999999999999999873
No 41
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.62 E-value=2.5e-16 Score=107.76 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=38.0
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++++++++.+ ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|+
T Consensus 40 ~l~~~~l~~~~---~~vl~~------isl~i~~Ge~~---~i~G~NGsGKSTLlk~l~Gl~~p~ 91 (290)
T 2bbs_A 40 SLSFSNFSLLG---TPVLKD------INFKIERGQLL---AVAGSTGAGKTSLLMMIMGELEPS 91 (290)
T ss_dssp ----------C---CCSEEE------EEEEECTTCEE---EEEESTTSSHHHHHHHHTTSSCEE
T ss_pred eEEEEEEEEcC---ceEEEe------eEEEEcCCCEE---EEECCCCCcHHHHHHHHhcCCCCC
Confidence 57889999853 346666 99999999999 999999999999999999999886
No 42
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.62 E-value=4e-16 Score=113.83 Aligned_cols=56 Identities=23% Similarity=0.276 Sum_probs=50.4
Q ss_pred eEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|++. ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~------isl~i~~G~~~---~ivG~sGsGKSTll~~l~g~~~p~~ 395 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKD------INLSIEKGETV---AFVGMSGGGKSTLINLIPRFYDVTS 395 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEE------EEEEECTTCEE---EEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred eEEEEEEEEEcCCCCCcceee------eEEEECCCCEE---EEECCCCChHHHHHHHHhcCCCCCC
Confidence 48999999999753 457777 99999999999 9999999999999999999999863
No 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.59 E-value=1.1e-15 Score=112.00 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=50.2
Q ss_pred eEEEeceeEEccC-ceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQ-AAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~-~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|++ ...++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~------isl~i~~Ge~~---~ivG~sGsGKSTll~~l~g~~~~~~ 397 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSG------VNFSVKPGSLV---AVLGETGSGKSTLMNLIPRLIDPER 397 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEE------EEEEECTTCEE---EEECSSSSSHHHHHHTTTTSSCCSE
T ss_pred cEEEEEEEEEcCCCCCcceec------eEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCccCCC
Confidence 5899999999964 2457777 99999999999 9999999999999999999999863
No 44
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.56 E-value=1.9e-15 Score=117.08 Aligned_cols=57 Identities=26% Similarity=0.341 Sum_probs=50.6
Q ss_pred ceEEEeceeEEccCc-eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQA-AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~-~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++|+++.|++. ..++++ +||++++|+++ +|+||||||||||+++|+|+.+|++
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~d------VSl~I~~Geiv---aIiGpNGSGKSTLLklLaGll~P~s 727 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITD------INFQCSLSSRI---AVIGPNGAGKSTLINVLTGELLPTS 727 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEE------EEEEEETTCEE---EECSCCCHHHHHHHHHHTTSSCCSE
T ss_pred ceEEEEeeEEEeCCCCceeeec------cEEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCc
Confidence 379999999999642 356777 99999999999 9999999999999999999999863
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.55 E-value=4.1e-15 Score=108.38 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=44.5
Q ss_pred EE-eceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 6 EL-SQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 6 ~~-~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++ ++++++|+....++.+ +| ++++||++ +|+||||||||||+++|+|++.|++
T Consensus 22 ~~~~~ls~~yg~~~~~l~~------vs-~i~~Ge~~---~LvG~NGaGKSTLlk~l~Gl~~p~~ 75 (538)
T 1yqt_A 22 QLEEDCVHRYGVNAFVLYR------LP-VVKEGMVV---GIVGPNGTGKSTAVKILAGQLIPNL 75 (538)
T ss_dssp --CCCEEEECSTTCCEEEC------CC-CCCTTSEE---EEECCTTSSHHHHHHHHHTSSCCCT
T ss_pred hHhcCcEEEECCccccccC------cC-cCCCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45 5899999864335555 99 99999999 9999999999999999999999874
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.55 E-value=4.5e-15 Score=109.76 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=44.9
Q ss_pred eceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 8 SQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 8 ~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++++++|+....++.+ ++ ++++||++ +|+||||||||||+++|+|++.|++
T Consensus 95 ~~ls~~yg~~~~~l~~------vs-~i~~Ge~~---~LiG~NGsGKSTLlkiL~Gll~p~~ 145 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYR------LP-IVKDGMVV---GIVGPNGTGKTTAVKILAGQLIPNL 145 (607)
T ss_dssp GSEEEECSTTCCEEEC------CC-CCCTTSEE---EEECCTTSSHHHHHHHHTTSSCCCT
T ss_pred CCeEEEECCCCeeeCC------CC-CCCCCCEE---EEECCCCChHHHHHHHHhCCCCCCC
Confidence 8999999864335555 99 89999999 9999999999999999999999874
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.54 E-value=1.4e-14 Score=105.51 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=48.8
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++ ..+.. ++|++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 286 ~~l~~~~l~~~~~~--~~l~~------~~~~i~~Ge~~---~i~G~NGsGKSTLlk~l~Gl~~p~~ 340 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS--FRLEV------EPGEIKKGEVI---GIVGPNGIGKTTFVKMLAGVEEPTE 340 (538)
T ss_dssp EEEEECCEEEEETT--EEEEE------CCEEEETTCEE---EEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred eEEEEeeEEEEECC--EEEEe------CccccCCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 36899999999976 24566 89999999999 9999999999999999999999863
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.53 E-value=1.7e-14 Score=106.74 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=48.9
Q ss_pred ceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 3 AIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 3 ~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.+++++++++.|++. .+.. ++|++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 356 ~~l~~~~l~~~~~~~--~l~~------~~~~v~~Gei~---~i~G~NGsGKSTLlk~l~Gl~~p~~ 410 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF--KLEV------EPGEIRKGEVI---GIVGPNGIGKTTFVKMLAGVEEPTE 410 (607)
T ss_dssp EEEEECCEEEECSSC--EEEE------CCEEEETTCEE---EEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred eEEEEeceEEEecce--EEEe------cccccCCCCEE---EEECCCCCCHHHHHHHHhcCCCCCc
Confidence 368999999999762 4566 89999999999 9999999999999999999999863
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.52 E-value=2.3e-14 Score=104.77 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=47.7
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++++++.|++ ..+.. .+|++++||++ +|+||||||||||+++|+|+++|++
T Consensus 269 ~l~~~~l~~~~~~--~~l~~------~~~~i~~Gei~---~i~G~nGsGKSTLl~~l~Gl~~p~~ 322 (538)
T 3ozx_A 269 KMKWTKIIKKLGD--FQLVV------DNGEAKEGEII---GILGPNGIGKTTFARILVGEITADE 322 (538)
T ss_dssp EEEECCEEEEETT--EEEEE------CCEEEETTCEE---EEECCTTSSHHHHHHHHTTSSCCSB
T ss_pred eEEEcceEEEECC--EEEEe------ccceECCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 6788999999986 23455 78999999999 9999999999999999999999874
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.50 E-value=2.4e-14 Score=112.25 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=50.2
Q ss_pred eEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|+++ ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~------isl~i~~G~~~---~ivG~sGsGKSTl~~ll~g~~~~~~ 444 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKG------LNLKVKSGQTV---ALVGNSGCGKSTTVQLMQRLYDPLD 444 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEE------EEEEECTTCEE---EEECCSSSSHHHHHHHTTTSSCCSE
T ss_pred eEEEEEEEEEcCCCCCCcceec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhCCCCCCC
Confidence 48999999999753 357777 99999999999 9999999999999999999999863
No 51
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.49 E-value=1.7e-16 Score=100.37 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=42.0
Q ss_pred eceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 8 SQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 8 ~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++++.|++ ..++.+ +||++++|+++ +|+||||||||||+++|+|++ |+
T Consensus 11 ~~~~~~~g~-~~~l~~------vsl~i~~Ge~v---~L~G~nGaGKTTLlr~l~g~l-~~ 59 (158)
T 1htw_A 11 EFSMLRFGK-KFAEIL------LKLHTEKAIMV---YLNGDLGAGKTTLTRGMLQGI-GH 59 (158)
T ss_dssp HHHHHHHHH-HHHHHH------HHHCCSSCEEE---EEECSTTSSHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHH-HHHHhc------cccccCCCCEE---EEECCCCCCHHHHHHHHHHhC-CC
Confidence 356778875 345556 99999999999 999999999999999999998 75
No 52
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.48 E-value=3.1e-14 Score=111.87 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=50.6
Q ss_pred eEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.|+++||+++|+++ ..+|++ +||+|++||.+ ||+||||||||||+++|.|+.+|++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~------isl~I~~Ge~v---aIVG~SGsGKSTL~~lL~rl~~p~~ 1133 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKG------LSFSVEPGQTL---ALVGPSGCGKSTVVALLERFYDTLG 1133 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEE------EEEEECTTCEE---EEECSTTSSTTSHHHHHTTSSCCSS
T ss_pred eEEEEEEEEeCCCCCCCccccc------eeEEECCCCEE---EEECCCCChHHHHHHHHhcCccCCC
Confidence 48999999999753 257877 99999999999 9999999999999999999999974
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.45 E-value=4.4e-14 Score=110.75 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=49.6
Q ss_pred eEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++|++++|+++ ..++++ +||++++||++ +|+||||||||||+++|+|+.+|++
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~------vsl~i~~Ge~v---~ivG~sGsGKSTl~~~l~g~~~p~~ 1087 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQG------LSLEVKKGQTL---ALVGSSGCGKSTVVQLLERFYDPMA 1087 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSS------CCEEECSSSEE---EEECSSSTTHHHHHHHHTTSSCCSE
T ss_pred cEEEEEEEEECCCCCCCeeecc------eeEEEcCCCEE---EEECCCCCCHHHHHHHHhcCcCCCC
Confidence 48899999999753 246666 99999999999 9999999999999999999999863
No 54
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.44 E-value=1.1e-13 Score=108.76 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=50.3
Q ss_pred eEEEeceeEEccCc--eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 4 IEELSQLSDSMRQA--AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 4 ~l~~~~v~~~~~~~--~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++||+++|+.. ..++++ +||++++|+.+ +|+||||||||||+++|.|+.+|++
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~------isl~i~~G~~v---aivG~sGsGKSTll~ll~~~~~~~~ 472 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRG------MNLRVNAGQTV---ALVGSSGCGKSTIISLLLRYYDVLK 472 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEE------EEEEECTTCEE---EEEECSSSCHHHHHHHHTTSSCCSE
T ss_pred cEEEEEeeeeCCCCCCCceeec------eEEeecCCcEE---EEEecCCCcHHHHHHHhcccccccc
Confidence 48999999999752 457777 99999999999 9999999999999999999999863
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.3e-13 Score=102.20 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=40.9
Q ss_pred ceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 9 QLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 9 ~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++++|+.....+.. ++ .+++||++ +|+|||||||||||++|+|++.|++
T Consensus 82 ~~~~~Y~~~~~~l~~------l~-~~~~Gei~---~LvGpNGaGKSTLLkiL~Gll~P~~ 131 (608)
T 3j16_B 82 HVTHRYSANSFKLHR------LP-TPRPGQVL---GLVGTNGIGKSTALKILAGKQKPNL 131 (608)
T ss_dssp TEEEECSTTSCEEEC------CC-CCCTTSEE---EEECCTTSSHHHHHHHHHTSSCCCT
T ss_pred CeEEEECCCceeecC------CC-CCCCCCEE---EEECCCCChHHHHHHHHhcCCCCCC
Confidence 578888764333333 44 58999999 9999999999999999999999974
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.38 E-value=6.2e-13 Score=103.12 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=43.4
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
.+...++++.|++ ..++++ +||++++|+++ +|+||||||||||+++|+|
T Consensus 435 ~L~~~~ls~~yg~-~~iL~~------vsl~I~~Ge~v---~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 435 DLCNCEFSLAYGA-KILLNK------TQLRLKRARRY---GICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEEETT-EEEEEE------EEEEEETTCEE---EEECSTTSSHHHHHHHHHH
T ss_pred eeEEeeEEEEECC-EEeEec------ceEEEcCCCEE---EEECCCCCCHHHHHHHHhC
Confidence 3556689999987 567777 99999999999 9999999999999999983
No 57
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.36 E-value=1.6e-13 Score=89.28 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=25.3
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+||++++|+++ +|+||||||||||+++|+|+.
T Consensus 16 isl~i~~G~~~---~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 16 PRGSMNNIYPL---VICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------CCCCE---EEECSTTSSHHHHHHHHHHHS
T ss_pred CceecCCCCEE---EEECCCCCCHHHHHHHHHhhC
Confidence 99999999999 999999999999999999987
No 58
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.35 E-value=3.8e-14 Score=98.87 Aligned_cols=54 Identities=9% Similarity=0.034 Sum_probs=47.0
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++++++++.|+.+..++++ + |.+.+|+++ +|+||||||||||+++|+|+..|+
T Consensus 45 ~i~~~~l~~~~~tg~~ald~------l-l~i~~Gq~~---gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDG------L-LTCGIGQRI---GIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp STTCCCCCSEECCSCHHHHH------H-SCEETTCEE---EEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CeeecccceecCCCCEEEEe------e-eeecCCCEE---EEECCCCCCHHHHHHHHhcCCCCC
Confidence 56788999999743445555 9 999999999 999999999999999999998876
No 59
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.34 E-value=5.6e-15 Score=102.17 Aligned_cols=50 Identities=18% Similarity=0.099 Sum_probs=43.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+|++++|++.|+ ..++++ ++|++++|+++ +|+||||||||||+++|+|++
T Consensus 101 ~i~~~~vs~~y~--~~vL~~------vsl~i~~Ge~v---aIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKL------WLKGIPKKNCL---AFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHH------HHHTCTTCSEE---EEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEEEEEEcC--hhhhcc------ceEEecCCCEE---EEECCCCCcHHHHHHHHhhhc
Confidence 356788999887 346666 99999999999 999999999999999999864
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.34 E-value=7.3e-13 Score=98.15 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=42.4
Q ss_pred eceeEEccCceEEeecCCCceeeeEEecCC-----CEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 8 SQLSDSMRQAAALLADEDVDENSSSSSRRS-----STFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 8 ~~v~~~~~~~~~~l~~~~~~~~vs~~i~~g-----e~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
.++++.|+.....+.+ ++|++.+| |++ +|+||||||||||+++|+|+++|++
T Consensus 350 ~~~~~~y~~~~~~l~~------vsl~v~~G~~~~GEiv---~iiG~NGsGKSTLlk~l~Gl~~p~~ 406 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGD------FVLNVEEGEFSDSEIL---VMMGENGTGKTTLIKLLAGALKPDE 406 (608)
T ss_dssp SSSCCEECCEEEECSS------CEEEECCEECCTTCEE---EEESCTTSSHHHHHHHHHTSSCCSB
T ss_pred cceeEEecCcccccCc------eEEEEecCccccceEE---EEECCCCCcHHHHHHHHhcCCCCCC
Confidence 4566677653345555 99999988 789 9999999999999999999999873
No 61
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.32 E-value=5.5e-14 Score=100.63 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=46.9
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++++++++.|+.+..++++ + |++.+|+++ +|+||||||||||+++|+|+..|+
T Consensus 131 ~l~~~~v~~~~~tg~~vld~------v-l~i~~Gq~~---~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINA------L-LTVGRGQRM---GLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHH------H-SCCBTTCEE---EEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ceEEeccceecCCCceEEee------e-EEecCCCEE---EEECCCCCCHHHHHHHHhcccCCC
Confidence 56778999999743446666 9 999999999 999999999999999999998876
No 62
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.31 E-value=6.7e-13 Score=83.32 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=26.5
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHH
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSL 60 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l 60 (68)
+||++++||++ +|+||||||||||++++
T Consensus 2 vsl~i~~gei~---~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 2 MKLTIPELSLV---VLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEESSEEE---EEECCTTSCHHHHHHHH
T ss_pred ccccCCCCEEE---EEECCCCCCHHHHHHHH
Confidence 89999999999 99999999999999943
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.6e-14 Score=104.08 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=33.1
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++|++++|+++ +|+||||||||||+|+|+|+..|+
T Consensus 131 vsl~i~~Ge~v---~IvGpnGsGKSTLlr~L~Gl~~p~ 165 (460)
T 2npi_A 131 IRMSNFEGPRV---VIVGGSQTGKTSLSRTLCSYALKF 165 (460)
T ss_dssp HHHHSSSCCCE---EEEESTTSSHHHHHHHHHHTTHHH
T ss_pred CceEeCCCCEE---EEECCCCCCHHHHHHHHhCccccc
Confidence 88999999999 999999999999999999998764
No 64
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.26 E-value=5.3e-12 Score=92.26 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=38.9
Q ss_pred eceeEEccCceEEeecCCCceeeeE-EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 8 SQLSDSMRQAAALLADEDVDENSSS-SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 8 ~~v~~~~~~~~~~l~~~~~~~~vs~-~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++...+|+... ++. ..+ ..++||++ +|+||||||||||+++|+|++.|++
T Consensus 3 ~~~~~~~~~~~--f~l------~~l~~~~~Gei~---gLiGpNGaGKSTLlkiL~Gl~~p~~ 53 (538)
T 3ozx_A 3 GEVIHRYKVNG--FKL------FGLPTPKNNTIL---GVLGKNGVGKTTVLKILAGEIIPNF 53 (538)
T ss_dssp CCEEEESSTTS--CEE------ECCCCCCTTEEE---EEECCTTSSHHHHHHHHTTSSCCCT
T ss_pred CCCceecCCCc--eee------cCCCCCCCCCEE---EEECCCCCcHHHHHHHHhcCCCCCC
Confidence 35778898642 222 222 35699999 9999999999999999999999874
No 65
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.25 E-value=1.6e-12 Score=84.13 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=22.8
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh-CCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI-GHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~-Gl~ 64 (68)
+||++++|+++ +|+||||||||||+++|+ |+.
T Consensus 20 ~sl~v~~G~ii---~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 20 GSMLKSVGVIL---VLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --CCEECCCEE---EEECSCC----CHHHHHHC---
T ss_pred CCcccCCCCEE---EEECCCCCCHHHHHHHHHhcCC
Confidence 99999999999 999999999999999999 986
No 66
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.25 E-value=2.2e-12 Score=82.67 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=25.8
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.++++|+++ +|+||||||||||+++|+|+.+
T Consensus 15 ~~i~~Gei~---~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVV---VLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEE---EEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEE---EEECCCCCCHHHHHHHHHhhCC
Confidence 479999999 9999999999999999999873
No 67
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.23 E-value=5e-12 Score=91.98 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=33.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++|++++ +++ +|+|||||||||||++|+|++.|++
T Consensus 23 vsl~i~~-e~~---~liG~nGsGKSTLl~~l~Gl~~p~~ 57 (483)
T 3euj_A 23 RTFDFDE-LVT---TLSGGNGAGKSTTMAGFVTALIPDL 57 (483)
T ss_dssp EEEECCS-SEE---EEECCTTSSHHHHHHHHHHHHCCCT
T ss_pred eEEEEcc-ceE---EEECCCCCcHHHHHHHHhcCCCCCC
Confidence 9999999 999 9999999999999999999998864
No 68
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.23 E-value=4.4e-12 Score=93.63 Aligned_cols=35 Identities=23% Similarity=0.115 Sum_probs=26.0
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHH---------------------HHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVL---------------------NSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl---------------------~~l~Gl~~~~ 67 (68)
+||++++||++ +|+||||||||||+ ++++|+..|+
T Consensus 37 vsl~i~~Ge~~---~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~ 92 (670)
T 3ux8_A 37 IDVEIPRGKLV---VLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPD 92 (670)
T ss_dssp EEEEEETTSEE---EEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CC
T ss_pred cEEEECCCCEE---EEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCC
Confidence 99999999999 99999999999998 8888887775
No 69
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.20 E-value=5.6e-12 Score=79.31 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=25.8
Q ss_pred eEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 31 SSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 31 s~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
|+++.+|+++ +|+||||||||||+++|+|+.
T Consensus 1 s~~m~~g~ii---~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLF---IISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEE---EEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEE---EEECcCCCCHHHHHHHHHhhC
Confidence 4678899999 999999999999999999975
No 70
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.18 E-value=3e-12 Score=80.48 Aligned_cols=48 Identities=23% Similarity=0.173 Sum_probs=32.5
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++++++.|+. ..+ -+|.+.+|..+ +|+|+||||||||++.|+|..
T Consensus 3 ~l~~~~~~~~~~~--~~l--------~~~~~~~~~~v---~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMSA--PDI--------RHLPSDTGIEV---AFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEEE--SSG--------GGSSCSCSEEE---EEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheeec--CCH--------hHCCCCCCcEE---EEECCCCCCHHHHHHHHhCCC
Confidence 6899999999963 222 22678999998 999999999999999999987
No 71
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.18 E-value=1.6e-12 Score=85.04 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=28.2
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++|+++ +|+||||||||||+++|+|+ .|+
T Consensus 19 i~~Ge~~---~liG~nGsGKSTLl~~l~Gl-~p~ 48 (208)
T 3b85_A 19 IDTNTIV---FGLGPAGSGKTYLAMAKAVQ-ALQ 48 (208)
T ss_dssp HHHCSEE---EEECCTTSSTTHHHHHHHHH-HHH
T ss_pred ccCCCEE---EEECCCCCCHHHHHHHHhcC-CCc
Confidence 5899999 99999999999999999999 775
No 72
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.18 E-value=6.7e-12 Score=82.26 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=25.0
Q ss_pred eEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 18 AALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 18 ~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
..++++ +||++++|+++ +|+||||||||||+++|+|+
T Consensus 12 ~~~l~~------isl~i~~g~ii---gI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 12 DLGTEN------LYFQSMRPFLI---GVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -----------------CCSEEE---EEECSTTSSHHHHHHHHHHH
T ss_pred ceeecc------eeccCCCCEEE---EEECCCCCCHHHHHHHHHHH
Confidence 345666 99999999999 99999999999999999885
No 73
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.18 E-value=6.6e-13 Score=92.45 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=34.1
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++|.+++|+.+ +|+||||||||||+++|+|+..|++
T Consensus 168 l~~~i~~G~~i---~ivG~sGsGKSTll~~l~~~~~~~~ 203 (361)
T 2gza_A 168 LRRAVQLERVI---VVAGETGSGKTTLMKALMQEIPFDQ 203 (361)
T ss_dssp HHHHHHTTCCE---EEEESSSSCHHHHHHHHHTTSCTTS
T ss_pred HHHHHhcCCEE---EEECCCCCCHHHHHHHHHhcCCCCc
Confidence 99999999999 9999999999999999999998863
No 74
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=2e-12 Score=92.92 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=37.6
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCE--EeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSST--FLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~--~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++ ++.|++. . +++ ++|++++|++ + +|+||||||||||+++|+|+.
T Consensus 17 l~~~~-~~~y~~~-~-L~~------vsl~i~~Gei~~v---aLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 17 VPLAG-HVGFDSL-P-DQL------VNKSVSQGFCFNI---LCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CCCCC-CC-CC---C-HHH------HHHSCC-CCEEEE---EEECSTTSSSHHHHHHHHTSC
T ss_pred EEEee-EEEECCe-e-cCC------CceEecCCCeeEE---EEECCCCCCHHHHHHHHhCcc
Confidence 44555 7788763 3 666 9999999999 7 999999999999999999984
No 75
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.15 E-value=1.4e-12 Score=87.53 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=33.0
Q ss_pred ceEEEece-eEEccCceEEeecCCCceeeeEEecC---CCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 3 AIEELSQL-SDSMRQAAALLADEDVDENSSSSSRR---SSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 3 ~~l~~~~v-~~~~~~~~~~l~~~~~~~~vs~~i~~---ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
++++++++ ++.|++...++++ ++|++.+ |+++ +|+|++||||||+.++|++
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~------~~~~i~~~l~g~~i---~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKK------KAEEVKPYLNGRSM---YLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ----------------CHHHHH------HHHTTHHHHTTCCE---EEECSTTSCHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhh------hhhhhhhhcCCCEE---EEECCCCCCHHHHHHHHHH
Confidence 37899999 9999333456777 9999999 9999 9999999999999999986
No 76
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.14 E-value=2.8e-13 Score=93.21 Aligned_cols=31 Identities=19% Similarity=0.071 Sum_probs=28.7
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++|+++ +|+||||||||||+++|+|++.|.
T Consensus 87 ~~~g~iv---gI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 87 RPVPFII---GVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp SCCCEEE---EEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCCCEEE---EEECCCCchHHHHHHHHHhhcccc
Confidence 7899999 999999999999999999987763
No 77
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.13 E-value=2e-13 Score=92.90 Aligned_cols=50 Identities=18% Similarity=0.056 Sum_probs=41.6
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEe-------------------cCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSS-------------------RRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i-------------------~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++++|++.|.. ++++ +++.+ .+|+++ +|+|+||||||||+++|+|++
T Consensus 37 ~i~~~~v~~~y~~---~~~~------i~~~~~~~~~~~~~~~~~l~~~~~~~g~ii---gI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 37 DLSLEEVAEIYLP---LSRL------LNFYISSNLRRQAVLEQFLGTNGQRIPYII---SIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp TCCHHHHHHTHHH---HHHH------HHHHHHHHHHHHHHHHHHHTCC-CCCCEEE---EEEECTTSSHHHHHHHHHHHH
T ss_pred ccchHhHHHHHHH---HHHH------HHHHHhhhhhHHHHHHHHhccCCCCCCEEE---EEECCCCCCHHHHHHHHHHHH
Confidence 5677888888842 4555 77776 889999 999999999999999999976
Q ss_pred C
Q 035290 65 V 65 (68)
Q Consensus 65 ~ 65 (68)
.
T Consensus 105 ~ 105 (308)
T 1sq5_A 105 S 105 (308)
T ss_dssp T
T ss_pred h
Confidence 5
No 78
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.13 E-value=2.2e-12 Score=93.02 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=40.9
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeE-EecCCCEEeeeEEEcCCCCCHHHHHHH--HhCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSS-SSRRSSTFLNVVALGNVGAGKSAVLNS--LIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~-~i~~ge~~~~~~liG~sGsGKSTLl~~--l~Gl~~~~ 67 (68)
+++.+++.+.+.. ...+++ ++| .+++|+++ +|+||||||||||+++ ++|+.+|+
T Consensus 12 ~~~~~~~~~~~~g-~~~Ld~------i~~G~i~~Ge~~---~l~G~nGsGKSTL~~~~ll~Gl~~~~ 68 (525)
T 1tf7_A 12 NSEHQAIAKMRTM-IEGFDD------ISHGGLPIGRST---LVSGTSGTGKTLFSIQFLYNGIIEFD 68 (525)
T ss_dssp --CCSSCCEECCC-CTTHHH------HTTSSEETTSEE---EEEESTTSSHHHHHHHHHHHHHHHHC
T ss_pred CccccccccccCC-chhHHH------hcCCCCCCCeEE---EEEcCCCCCHHHHHHHHHHHHHHhCC
Confidence 4555556544433 345555 999 99999999 9999999999999999 78887654
No 79
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.13 E-value=1.7e-13 Score=94.84 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=45.0
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++++++++.|+. ..++++ ++|++.+|+++ +|+|+||||||||+++|+|++.|+
T Consensus 29 ~ie~~~~~~~~~~-~~~l~~------i~~~~~~g~~v---~i~G~~GaGKSTLl~~l~g~~~~~ 82 (337)
T 2qm8_A 29 LAESRRADHRAAV-RDLIDA------VLPQTGRAIRV---GITGVPGVGKSTTIDALGSLLTAA 82 (337)
T ss_dssp HHTCSSHHHHHHH-HHHHHH------HGGGCCCSEEE---EEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHeeCCcccccCh-HHHHHh------CCcccCCCeEE---EEECCCCCCHHHHHHHHHHhhhhC
Confidence 4667788888865 345666 99999999999 999999999999999999876553
No 80
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.12 E-value=7.3e-12 Score=89.46 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=34.2
Q ss_pred eeEEecCCC--------------------EEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 30 SSSSSRRSS--------------------TFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 30 vs~~i~~ge--------------------~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++|++++|+ ++ +|+||||||||||+|+|+|+..|++
T Consensus 42 is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~v---alvG~nGaGKSTLln~L~Gl~~p~~ 97 (413)
T 1tq4_A 42 IELRMRAGNIQLTNSAISDALKEIDSSVLNV---AVTGETGSGKSSFINTLRGIGNEEE 97 (413)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHCCEEE---EEEECTTSSHHHHHHHHHTCCTTST
T ss_pred ccceecCCCCcccchhhhhhhhhcccCCeEE---EEECCCCCcHHHHHHHHhCCCCccC
Confidence 999999999 88 9999999999999999999998864
No 81
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.08 E-value=8.9e-12 Score=86.05 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=34.0
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
++|.+++|+.+ +|+||||||||||+++|+|+..|++
T Consensus 164 l~~~i~~g~~v---~i~G~~GsGKTTll~~l~g~~~~~~ 199 (330)
T 2pt7_A 164 IKDGIAIGKNV---IVCGGTGSGKTTYIKSIMEFIPKEE 199 (330)
T ss_dssp HHHHHHHTCCE---EEEESTTSCHHHHHHHGGGGSCTTS
T ss_pred hhhhccCCCEE---EEECCCCCCHHHHHHHHhCCCcCCC
Confidence 88999999999 9999999999999999999998863
No 82
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.08 E-value=1.7e-12 Score=87.21 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=37.2
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++++++++. .++++ ++ +++|+++ +|+||||||||||+++|+|++.|+
T Consensus 6 ~~l~~l~~~-----~vl~~------i~--i~~g~~v---~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 6 PEFKKLGLP-----DKVLE------LC--HRKMGLI---LVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp CCGGGSSCC-----THHHH------GG--GCSSEEE---EEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CChHHCCCH-----HHHHH------Hh--hCCCCEE---EEECCCCccHHHHHHHHHHhCCCC
Confidence 445566532 24555 77 8999999 999999999999999999987663
No 83
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.07 E-value=4.6e-11 Score=78.46 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=26.9
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
..++|+++ +|+||||||||||+++|+|+.+|
T Consensus 12 ~~~~G~ii---~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 12 HMAQGTLY---IVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp ---CCCEE---EEECCTTSCHHHHHHHHHHHSCT
T ss_pred cCCCCcEE---EEECCCCCCHHHHHHHHhccCCC
Confidence 58999999 99999999999999999999875
No 84
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.07 E-value=1.3e-11 Score=84.50 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=32.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++|++++|+++ +++||||||||||++.|+|++.|+
T Consensus 93 l~~~~~~g~vi---~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 93 LQLGFRKPAVI---MIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp CCCCSSSCEEE---EEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cccccCCCcEE---EEEcCCCCCHHHHHHHHHHHHHHc
Confidence 88899999999 999999999999999999987764
No 85
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.07 E-value=5.2e-11 Score=85.03 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=35.9
Q ss_pred cceEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 2 EAIEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 2 ~~~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
..+++++++++.|+.. .++++ ++|++ +|+|+||+|||||+++|+|+..+
T Consensus 9 ~~~l~~~~l~~~y~~~-~vl~~------vsf~I---------~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 9 EGYVGFANLPNQVYRK-SVKRG------FEFTL---------MVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp ------CCCCCCTTTT-TCC-C------CCEEE---------EEECCTTSSHHHHHHHHTTCCCC
T ss_pred cCcEEEEecceeECCE-EEecC------CCEEE---------EEECCCCCcHHHHHHHHhCCCCC
Confidence 4578999999999864 45555 88875 78999999999999999999764
No 86
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.05 E-value=5.6e-11 Score=75.41 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=27.8
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
-+++|+++ +|+||||||||||+++|+|+..+
T Consensus 21 gi~~G~~~---~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIETQAIT---EVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEESSEEE---EEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCcEE---EEECCCCCCHHHHHHHHHHHHhc
Confidence 48999999 99999999999999999995443
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.03 E-value=6e-11 Score=92.06 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=38.2
Q ss_pred eEEEec-----eeEEccCceEEeecCCCceeeeEEecC-------CCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 4 IEELSQ-----LSDSMRQAAALLADEDVDENSSSSSRR-------SSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 4 ~l~~~~-----v~~~~~~~~~~l~~~~~~~~vs~~i~~-------ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++++ +++.|.....++.+ ++|++++ |+++ +|+||||||||||||++ |+.
T Consensus 750 ~l~i~~~rHP~l~~~~~~~~~v~nd------i~l~~~~~~~~~~~g~i~---~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGDDFIPND------ILIGCEEEEQENGKAYCV---LVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CEEEEEECCCC------CCCCCCEE------EEESCCCSCC---CCCEE---EEECCTTSSHHHHHHHH-HHH
T ss_pred eEEEEeccccEEEEEecCCceEeee------eeeccccccccCCCCcEE---EEECCCCCChHHHHHHH-HHH
Confidence 688999 89888433456666 9999987 8999 99999999999999999 764
No 88
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.03 E-value=1.5e-10 Score=72.64 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=27.1
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++.+|+++ +|+|||||||||++++|+++..|
T Consensus 2 ~i~~g~~i---~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLI---VLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEE---EEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEE---EEECCCCCCHHHHHHHHHHhhCC
Confidence 57899999 99999999999999999998754
No 89
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.02 E-value=4.5e-11 Score=76.65 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=25.0
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
.+++|+++ +|+||||||||||+++|+
T Consensus 26 gi~~G~~~---~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTV---LLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEE---EEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEE---EEEeCCCCCHHHHHHHHH
Confidence 58999999 999999999999999998
No 90
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.02 E-value=1.6e-10 Score=71.98 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=25.9
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++|+++ +|+||||||||||+++|++.
T Consensus 5 ~i~~g~~i---~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNIL---LLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEE---EEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEE---EEECCCCCCHHHHHHHHHhc
Confidence 57899999 99999999999999999997
No 91
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.01 E-value=1.6e-10 Score=85.32 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=27.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
+||+|++||++ +|+||||||||||+++|.
T Consensus 341 vsl~I~~Ge~v---aIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 341 VSVKIPLGTFV---AVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEEETTSEE---EEECSTTSSHHHHHTTTH
T ss_pred ceeEecCCCEE---EEEeeCCCCHHHHHHHHH
Confidence 99999999999 999999999999998753
No 92
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.01 E-value=2.7e-11 Score=83.60 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=33.2
Q ss_pred eeEEecC--CCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRR--SSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~--ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++++++ ++.+ +|+||||||||||+++|+|+..|+
T Consensus 161 v~~~v~~~lg~k~---~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 161 IPKEARPFFAKTV---AILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp SCTTTGGGTCEEE---EEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHhhhCeE---EEECCCCCCHHHHHHHHHHHhCCC
Confidence 8899999 9999 999999999999999999998875
No 93
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.99 E-value=5.6e-11 Score=76.09 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=27.1
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.++|+++ +|+||||||||||+++|+|++.|
T Consensus 19 ~~~g~~v---~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLV---ALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEE---EEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEE---EEECCCCCCHHHHHHHHHHHHhh
Confidence 4789999 99999999999999999998764
No 94
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.99 E-value=4.6e-11 Score=84.00 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=32.6
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++|++++|+++ +++||||||||||++.|+|++.|+
T Consensus 150 l~l~~~~g~vi---~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 150 LQLGFRKPAVI---MIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp CCCCSSSSEEE---EEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cceecCCCeEE---EEEcCCCChHHHHHHHHHhhcccc
Confidence 88899999999 999999999999999999987764
No 95
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.97 E-value=3e-10 Score=70.56 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=29.2
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+++++.+| +. +|+||||||||||+++|.+++.+
T Consensus 20 ~~~~~~~g-~~---~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 20 VVIPFSKG-FT---AIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEECCSS-EE---EEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEEecCCC-cE---EEECCCCCCHHHHHHHHHHHHcC
Confidence 88888888 87 99999999999999999886544
No 96
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.97 E-value=1.1e-10 Score=78.60 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=22.7
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++|+||||||||||+++|+|+..|+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~ 29 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR 29 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 56999999999999999999998875
No 97
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.97 E-value=2e-10 Score=77.95 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=30.4
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
|++.+|+++ +++||||||||||+++|+|+.+|++
T Consensus 164 f~~l~geiv---~l~G~sG~GKSTll~~l~g~~~~~~ 197 (301)
T 1u0l_A 164 KEYLKGKIS---TMAGLSGVGKSSLLNAINPGLKLRV 197 (301)
T ss_dssp HHHHSSSEE---EEECSTTSSHHHHHHHHSTTCCCC-
T ss_pred HHHhcCCeE---EEECCCCCcHHHHHHHhcccccccc
Confidence 456789999 9999999999999999999998863
No 98
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.96 E-value=1e-10 Score=80.84 Aligned_cols=32 Identities=22% Similarity=0.101 Sum_probs=29.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
++|++.+| ++ +|+|||||||||||++|.++..
T Consensus 54 v~l~~~~G-~~---~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 54 LELELGGG-FC---AFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEECCSS-EE---EEEESHHHHHHHHTHHHHHHTT
T ss_pred EEEecCCC-cE---EEECCCCCCHHHHHHHHHHHhC
Confidence 99999999 98 9999999999999999977654
No 99
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.95 E-value=7.9e-11 Score=86.30 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=32.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++|++.+|+++ +|+|+||||||||+++|+|++.++
T Consensus 286 Isl~i~~GeVI---~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 286 LNVEGKAPFVI---LMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp CCCCSCTTEEE---EEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ceeeccCCeEE---EEECCCcccHHHHHHHHHHHhhhc
Confidence 89999999999 999999999999999999987654
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.95 E-value=1.3e-10 Score=73.67 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=24.9
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.++|+++ +|+||||||||||+++|+|++.
T Consensus 3 ~~~~~~i---~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVI---GIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEE---EEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEE---EEECCCCCCHHHHHHHHHHHhC
Confidence 4788898 9999999999999999999754
No 101
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.95 E-value=1.5e-10 Score=74.04 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=22.6
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++|+++ +|+||||||||||+++|.|+.
T Consensus 2 ~~g~~i---~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPV---VLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCE---EEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEE---EEECCCCCCHHHHHHHHHhhC
Confidence 578888 999999999999999999875
No 102
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.94 E-value=2.3e-10 Score=72.08 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.4
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
|+++ +|+||||||||||+++|+|+..
T Consensus 1 ~~ii---~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPI---VISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCE---EEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEE---EEECCCCCCHHHHHHHHHhhCC
Confidence 4567 9999999999999999999875
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.87 E-value=7.7e-10 Score=75.22 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=21.2
Q ss_pred eceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC-CCC
Q 035290 8 SQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH-PVL 66 (68)
Q Consensus 8 ~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl-~~~ 66 (68)
+++++.|+. ..++++ ++|++ +|+|+||+|||||+++|+|. ..|
T Consensus 2 ~~l~~~~~~-~~~l~~------~~~~I---------~lvG~nG~GKSTLl~~L~g~~~~~ 45 (301)
T 2qnr_A 2 SNLPNQVHR-KSVKKG------FEFTL---------MVVGESGLGKSTLINSLFLTDLYP 45 (301)
T ss_dssp -----------------------CEEE---------EEEEETTSSHHHHHHHHHC-----
T ss_pred CCCcceECC-EEEEcC------CCEEE---------EEECCCCCCHHHHHHHHhCCCccC
Confidence 478888986 445555 88875 78999999999999999997 544
No 104
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.87 E-value=8.6e-10 Score=69.26 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.9
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+|+++ +|+||||||||||+++|+++..
T Consensus 3 ~~g~~i---~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTL---VLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEE---EEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEE---EEECCCCCCHHHHHHHHHhhCC
Confidence 368888 9999999999999999998764
No 105
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.87 E-value=1.5e-10 Score=77.20 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=32.2
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++.+++|+++ +|+||||||||||++.|+|+..|+
T Consensus 28 i~~~l~~G~~~---~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 28 KTLGARGGEVI---MVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp HHCSBCTTCEE---EEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HhcCCCCCeEE---EEEeCCCCCHHHHHHHHHHHHHHH
Confidence 88999999999 999999999999999999876553
No 106
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.86 E-value=2.7e-10 Score=82.93 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=33.2
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++.+++|+.+ +|+||||||||||+++|+|+..|++
T Consensus 253 l~~~v~~g~~i---~I~GptGSGKTTlL~aL~~~i~~~~ 288 (511)
T 2oap_1 253 LWLAIEHKFSA---IVVGETASGKTTTLNAIMMFIPPDA 288 (511)
T ss_dssp HHHHHHTTCCE---EEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHHHHhCCCEE---EEECCCCCCHHHHHHHHHhhCCCCC
Confidence 77888999999 9999999999999999999998763
No 107
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.86 E-value=7.1e-10 Score=84.97 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=37.3
Q ss_pred eEEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHH-HhCC
Q 035290 4 IEELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNS-LIGH 63 (68)
Q Consensus 4 ~l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~-l~Gl 63 (68)
.++++++++. .+++ +||+|++|+++ +|+|+||||||||+++ |+|+
T Consensus 502 ~L~v~~l~~~------~L~~------vsl~i~~Geiv---~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 502 WLELNGVTRN------NLDN------LDVRFPLGVMT---SVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp EEEEEEEEET------TEEE------EEEEEESSSEE---EEECCTTSSHHHHCCCCCHHH
T ss_pred eEEEEeeeec------cccc------ceEEEcCCCEE---EEEcCCCcCHHHHHHHHHHHH
Confidence 5777787641 3555 99999999999 9999999999999996 6644
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.85 E-value=7.6e-10 Score=70.48 Aligned_cols=23 Identities=17% Similarity=0.538 Sum_probs=20.9
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++|+||||||||||+++|+|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35999999999999999999875
No 109
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.85 E-value=4e-11 Score=85.53 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=27.5
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.+|+++ +|+|||||||||||++|+|+..|+
T Consensus 165 ~~ggii---~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 165 RPHGII---LVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSSEEE---EEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hcCCeE---EEECCCCCCHHHHHHHHHhhcCCC
Confidence 688998 999999999999999999987765
No 110
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=1.7e-09 Score=68.54 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=22.9
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+||++++++++ +|+|++||||||+.+.|+.
T Consensus 18 ~~~~~~~~~~i---~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 18 LYFQSNAMVRI---FLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ------CCCEE---EEECCTTSCHHHHHHHHHH
T ss_pred eeEecCCCCEE---EEEcCCCCCHHHHHHHHHH
Confidence 99999999999 9999999999999999984
No 111
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.84 E-value=6.7e-10 Score=76.16 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=27.0
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+|+++ +|+||||||||||+++|+|++.|+
T Consensus 101 ~g~vi---~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVV---LVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEE---EEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEE---EEECCCCCcHHHHHHHHHHHHHhc
Confidence 68999 999999999999999999998775
No 112
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.81 E-value=2.2e-10 Score=84.46 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=28.9
Q ss_pred eEEEeceeEEccCc-eEEeec------CCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 4 IEELSQLSDSMRQA-AALLAD------EDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 4 ~l~~~~v~~~~~~~-~~~l~~------~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.++++++++.|+.. +.+++. -++ +.+++++. + +|+||||||||||+++|+|+..|
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv--~~~l~lp~---i---aIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGV--EQDLALPA---I---AVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSC--CSSCCCCC---E---ECCCCTTSCHHHHHHHHHSCC--
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCC--CCcccCCe---E---EEECCCCChHHHHHHHHhCCCCC
Confidence 46788999999753 123322 110 02355554 5 99999999999999999999877
No 113
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.81 E-value=6.7e-10 Score=71.57 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=23.3
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
|+++ +|+||||||||||+++|+|++.
T Consensus 1 G~~i---~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHV---FLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCE---EEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEE---EEECCCCChHHHHHHHHHhhcc
Confidence 5677 9999999999999999998754
No 114
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.81 E-value=3e-09 Score=69.37 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=26.2
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHh---CCCCCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLI---GHPVLV 67 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~---Gl~~~~ 67 (68)
+++++ +|+||||||||||+++|+ |+..|+
T Consensus 26 ~~~~i---~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRA---VILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEE---EEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEE---EEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 46888 999999999999999999 998764
No 115
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.79 E-value=3.4e-09 Score=67.94 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=26.4
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++|+++ +|+||||||||||+++|++...+
T Consensus 6 ~~g~~i---~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLI---VLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEE---EEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEE---EEECcCCCCHHHHHHHHHhhCCC
Confidence 579999 99999999999999999988754
No 116
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.78 E-value=3.8e-09 Score=74.17 Aligned_cols=47 Identities=23% Similarity=0.228 Sum_probs=35.8
Q ss_pred EEEeceeEEccCceEEeecCCCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 5 EELSQLSDSMRQAAALLADEDVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++++|+ +.|++ . ..+++.+++++ +|+||||||||||+++|+++..+.
T Consensus 7 l~~~~~-~~~~~-~-----------~~~~~~~~~~~---~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 7 LELSNF-KSYRG-V-----------TKVGFGESNFT---SIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EEEESC-SSCCS-E-----------EEEECTTCSEE---EEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEEeCE-EEECC-c-----------eeEEecCCCEE---EEECCCCCCHHHHHHHHHhhhccc
Confidence 566777 56654 1 11346789999 999999999999999999987664
No 117
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.78 E-value=5.9e-10 Score=76.95 Aligned_cols=33 Identities=30% Similarity=0.310 Sum_probs=26.7
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++.+|+++ +|+||||+|||||+++|+|+.+|.
T Consensus 168 ~~~~~G~~~---~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 168 IPHFQDKTT---VFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp GGGGTTSEE---EEEESHHHHHHHHHHHHCC-----
T ss_pred HhhcCCCEE---EEECCCCCCHHHHHHHhccccccc
Confidence 678899999 999999999999999999998775
No 118
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.77 E-value=5.1e-10 Score=71.08 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=28.3
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.++..++|+++ +|+|+|||||||++++|++.+
T Consensus 18 ~~~~~~~g~~i---~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 18 QRLLDQKGCVI---WVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHHHTSCCEEE---EEECSTTSSHHHHHHHHHHHH
T ss_pred HHhcCCCCeEE---EEECCCCCCHHHHHHHHHHHH
Confidence 56667899999 999999999999999998754
No 119
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.76 E-value=1.2e-09 Score=75.70 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=28.0
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
.++|+++ +++|||||||||++++|+|+++|+
T Consensus 126 ~~~g~vi---~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 126 AEKPYVI---MFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SCSSEEE---EEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEE---EEECCCCCCHHHHHHHHHHHHHhc
Confidence 3689999 999999999999999999987764
No 120
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.76 E-value=2.6e-09 Score=70.56 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=27.3
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHh---CCCCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLI---GHPVLV 67 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~---Gl~~~~ 67 (68)
.+|+++ +|+|||||||||++++|+ |+..++
T Consensus 25 ~~g~~I---~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 25 AIAPVI---TVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TTSCEE---EEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEE---EEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 788999 999999999999999999 987664
No 121
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.76 E-value=5.8e-09 Score=80.57 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=31.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHH--------hCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSL--------IGHPVL 66 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l--------~Gl~~~ 66 (68)
++|++.+|+++ +|+|||||||||+||++ .|...|
T Consensus 655 isl~~~~g~i~---~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp 696 (934)
T 3thx_A 655 VYFEKDKQMFH---IITGPNMGGKSTYIRQTGVIVLMAQIGCFVP 696 (934)
T ss_dssp EEEETTTBCEE---EEECCTTSSHHHHHHHHHHHHHHHHHTCCBS
T ss_pred ceeecCCCeEE---EEECCCCCCHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999 99999999999999999 676655
No 122
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.75 E-value=8.9e-11 Score=78.03 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=27.1
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++.+ +++ +|+|||||||||||++|+|++.|+
T Consensus 24 ~~~~-~~~---~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 24 DLDE-LVT---TLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp CHHH-HHH---HHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEcC-cEE---EEECCCCCCHHHHHHHHhcccccC
Confidence 3445 788 999999999999999999998876
No 123
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.75 E-value=3.7e-09 Score=71.90 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=28.8
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCCC
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLVS 68 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~~ 68 (68)
+++.+|+++ +++||||+|||||+++|+ +..|++
T Consensus 160 ~~~l~G~i~---~l~G~sG~GKSTLln~l~-~~~~~~ 192 (302)
T 2yv5_A 160 VDYLEGFIC---ILAGPSGVGKSSILSRLT-GEELRT 192 (302)
T ss_dssp HHHTTTCEE---EEECSTTSSHHHHHHHHH-SCCCCC
T ss_pred HhhccCcEE---EEECCCCCCHHHHHHHHH-HhhCcc
Confidence 346679999 999999999999999999 887753
No 124
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.74 E-value=4.6e-09 Score=66.64 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=23.5
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+..++|+++ +|+|+|||||||++++|++.
T Consensus 24 m~~~~g~~i---~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 24 MTGEPTRHV---VVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ----CCCEE---EEECCTTSCHHHHHHHHHHH
T ss_pred hcCCCCcEE---EEECCCCCCHHHHHHHHHHh
Confidence 456789999 99999999999999999864
No 125
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.74 E-value=7.8e-09 Score=72.77 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=29.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC-CC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV-LV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~-~~ 67 (68)
+++ ..+|+++ +|+||||+|||||+++|+|+.. |.
T Consensus 209 L~~-~~~G~~~---~lvG~sG~GKSTLln~L~g~~~~~~ 243 (358)
T 2rcn_A 209 LEE-ALTGRIS---IFAGQSGVGKSSLLNALLGLQNEIL 243 (358)
T ss_dssp HHH-HHTTSEE---EEECCTTSSHHHHHHHHHCCSSCCC
T ss_pred HHH-hcCCCEE---EEECCCCccHHHHHHHHhccccccc
Confidence 444 3589999 9999999999999999999987 65
No 126
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.73 E-value=3.9e-09 Score=80.08 Aligned_cols=29 Identities=21% Similarity=0.088 Sum_probs=27.0
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++|+ |+++ +|+||||||||||||+|+|+.
T Consensus 572 isl~---g~i~---~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 572 LEMA---HELV---LITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEES---SCEE---EEESCSSSSHHHHHHHHHHHH
T ss_pred ccCC---CcEE---EEECCCCCChHHHHHHHHhhh
Confidence 8887 9999 999999999999999999864
No 127
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.72 E-value=5.6e-09 Score=79.49 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=28.6
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++|+ ++|+++ +|+||||||||||||+|+|+
T Consensus 601 isl~-~~g~i~---~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 601 LNLS-PQRRML---IITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEC-SSSCEE---EEECCTTSSHHHHHHHHHHH
T ss_pred cccc-CCCcEE---EEECCCCCChHHHHHHHHHH
Confidence 9999 999999 99999999999999999985
No 128
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.71 E-value=5.4e-09 Score=73.31 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=28.0
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++|++.+| ++ +|+|||||||||++++|.++
T Consensus 20 ~~~~~~~g-~~---~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 20 GTLNFPEG-VT---GIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEECCSE-EE---EEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEcCC-eE---EEECCCCCChhHHHHHHHHh
Confidence 99999999 88 99999999999999999863
No 129
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.71 E-value=7.9e-09 Score=80.48 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=27.3
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHH
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSL 60 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l 60 (68)
+||+|++|+++ +|+|+||||||||+++|
T Consensus 661 Vsl~I~~Geiv---aI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 661 IDVSFPLGVLT---SVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp EEEEEESSSEE---EEECSTTSSHHHHHTTT
T ss_pred ceEEECCCCEE---EEEcCCCCCHHHHHHHH
Confidence 99999999999 99999999999999985
No 130
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.71 E-value=3.3e-09 Score=81.86 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=28.8
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
++|++++|+++ +|+||||||||||||++++
T Consensus 666 vsl~~~~g~i~---~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 666 TDLSEDSERVM---IITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEECTTSCCEE---EEESCCCHHHHHHHHHHHH
T ss_pred ccccCCCCeEE---EEECCCCCchHHHHHHHHH
Confidence 99999999999 9999999999999999874
No 131
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.68 E-value=1e-08 Score=64.57 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=28.0
Q ss_pred eeE-EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSS-SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~-~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+.. .+++|+++ +|+||||||||||++.|++..
T Consensus 15 ~~~ggi~~G~~~---~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 15 LIQGGIPQGFFI---ALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp GGTTSEETTCEE---EEECSTTSSHHHHHHHHHHHH
T ss_pred HhcCCCcCCCEE---EEEcCCCCCHHHHHHHHHHHH
Confidence 554 68999999 999999999999999998653
No 132
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.68 E-value=8.1e-09 Score=80.30 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=27.6
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
+||+|++|+++ +|+|+||||||||+++|.
T Consensus 643 Vsl~I~~Geiv---~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 643 VSVKIPLGTFV---AVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEEESSSEE---ECCBCTTSSHHHHHTTTH
T ss_pred ceEEEcCCCEE---EEEcCCCCCHHHHHHHHH
Confidence 99999999999 999999999999999853
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.67 E-value=4.7e-09 Score=65.27 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=28.0
Q ss_pred eEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 31 SSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 31 s~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+|.+.+|+.+ +|+||||+|||||++++++...
T Consensus 32 ~~~~~~g~~~---~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEEGKGL---TFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGGCCEE---EECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccCCCEE---EEECCCCCCHHHHHHHHHHHHH
Confidence 4667889999 9999999999999999987653
No 134
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.67 E-value=1.1e-09 Score=76.66 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=28.0
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
...+++++ +|+||||||||||+++|+|+..|+
T Consensus 119 ~~~~~g~i---~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 119 SDVPRGLV---LVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HHCSSEEE---EEECSTTSCHHHHHHHHHHHHHHH
T ss_pred HhCCCCEE---EEECCCCCCHHHHHHHHHhcccCC
Confidence 56788888 999999999999999999987653
No 135
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.65 E-value=2.4e-09 Score=74.83 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=28.0
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++|+++ +|+||||||||||+++|+|+..|+
T Consensus 133 ~~~g~~i---~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLI---LVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEE---EEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEE---EEECCCCCCHHHHHHHHHhhcCcC
Confidence 7889999 999999999999999999987653
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.65 E-value=1.7e-08 Score=71.99 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=31.2
Q ss_pred eeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 29 NSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 29 ~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++|+++.++.+ +|+|+||||||||+++|++..
T Consensus 149 ~i~lelk~g~~V---gLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 149 RLRLELMLIADV---GLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEECCSCSE---EEECCGGGCHHHHHHHHCSSC
T ss_pred eeeeEEcCCCEE---EEECCCCCcHHHHHHHHHcCC
Confidence 399999999999 999999999999999999984
No 137
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.65 E-value=9e-09 Score=66.83 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.6
Q ss_pred eEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 31 SSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 31 s~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+...++|+++ +|.|+|||||||++++|+++
T Consensus 14 ~~~~~~g~~i---~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTV---LIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEE---EEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEE---EEECCCCCCHHHHHHHHHhc
Confidence 3456889999 99999999999999999886
No 138
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.64 E-value=8e-09 Score=64.52 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
|+++ +|+||||||||||+++|++
T Consensus 2 g~ii---~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLY---IITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEE---EEECSTTSSHHHHHHHHHH
T ss_pred CeEE---EEECCCCCcHHHHHHHHhc
Confidence 4566 9999999999999999986
No 139
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.63 E-value=1.2e-08 Score=62.50 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.0
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.++++ +|+|++||||||++++|++.+.
T Consensus 3 ~~~~i---~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNI---FLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCE---EEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeE---EEECCCCCCHHHHHHHHHHHhC
Confidence 35667 9999999999999999998643
No 140
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.61 E-value=2.4e-08 Score=63.69 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=25.6
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
-+++|+++ +|+||||||||||++.|++
T Consensus 20 gi~~G~~~---~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 20 GIETGSIT---EMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEETTSEE---EEECCTTSSHHHHHHHHHH
T ss_pred CCcCCeEE---EEECCCCCcHHHHHHHHHH
Confidence 48999999 9999999999999999998
No 141
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.60 E-value=5.2e-09 Score=70.20 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=28.5
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+++.+++| + +|+||||||||||+++|+|...+
T Consensus 39 ~~l~~~~G--v---lL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 39 LGLVTPAG--V---LLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp TTCCCCSE--E---EEESSTTSCHHHHHHHHHHHTTC
T ss_pred cCCCCCCe--E---EEECCCCCcHHHHHHHHHHHcCC
Confidence 78888888 6 99999999999999999987654
No 142
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.58 E-value=3.9e-08 Score=68.42 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=25.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
+++++.+| ++ +|+||||||||||+.+|+
T Consensus 17 ~~i~~~~g-~~---~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 17 VDIEFQSG-IT---VVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCSE-EE---EEECCTTSSHHHHHHHHH
T ss_pred eEEecCCC-eE---EEECCCCCCHHHHHHHHH
Confidence 78888888 77 899999999999999987
No 143
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.57 E-value=2.4e-08 Score=61.55 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.0
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+|+++ +|+|+|||||||++++|++.
T Consensus 6 ~~g~~i---~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIY---VLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEE---EEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEE---EEEcCCCCCHHHHHHHHHHh
Confidence 567888 99999999999999999863
No 144
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.56 E-value=3.7e-08 Score=61.67 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=24.4
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+...+++|+|+||||||||++.++|...+
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 33456799999999999999999988754
No 145
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.56 E-value=6.1e-10 Score=73.79 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=26.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++++| + .|+||||+|||||+++|++..
T Consensus 68 ~~~~~~~g--v---ll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 68 MGARIPKG--V---LLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp TTCCCCCE--E---EEECCTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCe--E---EEECCCcChHHHHHHHHHHHc
Confidence 77888888 6 899999999999999999864
No 146
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.56 E-value=5.2e-10 Score=76.39 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=36.2
Q ss_pred EEeceeEEccCceEEeecCCCceeeeEEecCC-------CEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 6 ELSQLSDSMRQAAALLADEDVDENSSSSSRRS-------STFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 6 ~~~~v~~~~~~~~~~l~~~~~~~~vs~~i~~g-------e~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+.++++..|++. .++.. +++.+++| +.+ +|+||||+|||||+++|++..
T Consensus 20 r~~~l~~~~g~~-~~~~~------l~~~i~~~~~~~~~~~~~---ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 20 RPKSLDEFIGQE-NVKKK------LSLALEAAKMRGEVLDHV---LLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SCSSGGGCCSCH-HHHHH------HHHHHHHHHHHTCCCCCE---EEESSTTSSHHHHHHHHHHHH
T ss_pred CCccHHHccCcH-HHHHH------HHHHHHHHHhcCCCCCeE---EEECCCCCcHHHHHHHHHHHh
Confidence 445566666552 34444 77777765 677 999999999999999999865
No 147
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.56 E-value=6.9e-08 Score=74.60 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=24.6
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHH
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVL 57 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl 57 (68)
+||++++|+++ +|+|+||||||||+
T Consensus 603 Vsl~I~~Geiv---~I~G~SGSGKSTLl 627 (916)
T 3pih_A 603 IDVEIPLGVFV---CVTGVSGSGKSSLV 627 (916)
T ss_dssp EEEEEESSSEE---EEECSTTSSHHHHH
T ss_pred cceEEcCCcEE---EEEccCCCChhhhH
Confidence 99999999999 99999999999997
No 148
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.55 E-value=3.4e-08 Score=67.17 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=27.3
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++.+| +. +|+||||||||||+.+|..+.
T Consensus 18 ~~l~~~~g-~~---~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 18 SLIGFSDR-VT---AIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEECCSS-EE---EEECCTTTCSTHHHHHHHHTS
T ss_pred eEEecCCC-cE---EEECCCCCcHHHHHHHHHHHh
Confidence 67788888 88 999999999999999998553
No 149
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.53 E-value=1.4e-08 Score=71.74 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=29.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++.+++|+++ +|+||+|||||||+++|++.
T Consensus 162 ~~~~i~~~~~i---~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 162 MVYNIPKKRYW---LFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHCCTTCCEE---EEECSTTSSHHHHHHHHHHH
T ss_pred cccccCCCCEE---EEECCCCCCHHHHHHHHHhh
Confidence 88999999999 99999999999999999874
No 150
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.52 E-value=3.8e-08 Score=64.27 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=25.9
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+...+|+++ +|+||||||||||++.|.+...
T Consensus 14 ~~~~~g~~i---vl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTL---VLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEE---EEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEE---EEECcCCCCHHHHHHHHHhhCC
Confidence 445689999 9999999999999999987653
No 151
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.52 E-value=4.7e-08 Score=61.86 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=26.5
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++.++ +|+|++||||||+++.|++..
T Consensus 17 ~~~~~~~i---~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFII---GISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEE---EEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEE---EEECCCCCCHHHHHHHHHHhc
Confidence 47888898 999999999999999999875
No 152
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.50 E-value=6.8e-08 Score=60.42 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.1
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+++++|++|+|||||++.++|...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4679999999999999999998753
No 153
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.49 E-value=1.9e-08 Score=63.97 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=24.9
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.++++++ +|+|+|||||||++++|++++
T Consensus 19 ~~~~~~i---~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVL---GIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEE---EEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEE---EEECCCCCCHHHHHHHHHHHH
Confidence 5678888 999999999999999998754
No 154
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.49 E-value=6.3e-08 Score=60.90 Aligned_cols=27 Identities=11% Similarity=-0.043 Sum_probs=25.2
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
.+++|+++ +|+||||||||||++.+++
T Consensus 16 gi~~G~~~---~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLT---QVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEE---EEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEE---EEECCCCCCHHHHHHHHHH
Confidence 48899999 9999999999999999876
No 155
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.48 E-value=2.3e-08 Score=61.92 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=24.6
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+|+.+ +|+||+|+|||||++++++...
T Consensus 35 ~g~~~---~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFI---YVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEE---EEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEE---EEECCCCCCHHHHHHHHHHHHH
Confidence 89999 9999999999999999997653
No 156
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.47 E-value=9.9e-09 Score=65.32 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=22.4
Q ss_pred eEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
++|+|+||||||||+++|+|++.|.
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3999999999999999999987664
No 157
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.47 E-value=2.3e-08 Score=65.05 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=26.8
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++++| + .|+||||+|||||+++|++..
T Consensus 44 ~~~~~~~g--~---ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 44 MGARIPKG--V---LLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp TTCCCCSE--E---EEECCTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCe--E---EEECCCCCCHHHHHHHHHHHh
Confidence 77888888 6 899999999999999999864
No 158
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.45 E-value=8.3e-08 Score=63.58 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=25.5
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++|+++ +|+||||||||||++.+++.
T Consensus 26 gl~~G~i~---~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVG---ALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEE---EEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEE---EEEcCCCCCHHHHHHHHHHH
Confidence 37899999 99999999999999998864
No 159
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.45 E-value=4.7e-08 Score=67.71 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=29.0
Q ss_pred eEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 31 SSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 31 s~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+.+++|+++ .|+||||||||||++.+++..
T Consensus 125 ~ggi~~G~i~---~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQAIT---EVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESSEEE---EEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEE---EEECCCCCCHHHHHHHHHHHh
Confidence 5689999999 999999999999999999876
No 160
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.44 E-value=2e-08 Score=73.83 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=27.9
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.+++|+++ +|+|+||||||||+++|++++.|
T Consensus 365 ~~~~G~iI---~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 365 RERQGFTV---FFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GGGSCEEE---EEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccceEE---EEECCCCChHHHHHHHHHHhhcc
Confidence 46799999 99999999999999999987654
No 161
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.42 E-value=4.6e-08 Score=70.61 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=42.4
Q ss_pred EEEeceeEEccCceEEeecC------------CCceeeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 5 EELSQLSDSMRQAAALLADE------------DVDENSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 5 l~~~~v~~~~~~~~~~l~~~------------~~~~~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++++++..|+..+..++.. | +.+.+.+|+.+ +|+||+|+|||||++.|++.
T Consensus 134 i~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID----~~~pi~rGQr~---~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 134 ILFENLTPLHANSRLRMERGNGSTEDLTARVLD----LASPIGRGQRG---LIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp CCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHH----HHSCCBTTCEE---EEECCSSSSHHHHHHHHHHH
T ss_pred ceeccccccCCCCccccccCCCCcccccceeee----eeeeecCCcEE---EEecCCCCChhHHHHHHHHH
Confidence 55788899998755555510 2 88999999999 99999999999999988763
No 162
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.40 E-value=1.8e-07 Score=58.93 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=19.5
Q ss_pred eEEEcCCCCCHHHHHHHHhCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl 63 (68)
++|+|++||||||+.++|+++
T Consensus 5 i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHC
Confidence 499999999999999999984
No 163
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.39 E-value=7.7e-08 Score=69.27 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=29.3
Q ss_pred eEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 31 SSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 31 s~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+..+++|+++ +|+|+||||||||++.++|+..|
T Consensus 275 ~g~i~~G~i~---~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 275 GGGFFKDSII---LATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp TSSEESSCEE---EEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCCCCCCcEE---EEEeCCCCCHHHHHHHHHHHHHh
Confidence 3478999999 99999999999999999987654
No 164
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.39 E-value=1e-07 Score=64.91 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.6
Q ss_pred eEEEcCCCCCHHHHHHHHhCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++|+|+||||||||++.|.|+.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 3999999999999999999986
No 165
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.37 E-value=3.1e-07 Score=56.74 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=21.9
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
..+++.+| +. +|+|||||||||++.+|.
T Consensus 17 ~~i~f~~g-~~---~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-IN---LIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EE---EEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eE---EEECCCCCCHHHHHHHHH
Confidence 44445544 66 899999999999999875
No 166
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.35 E-value=2.3e-07 Score=58.87 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.8
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+.++ +|+|++||||||++++|++.
T Consensus 5 ~~~i---~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVI---TIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEE---EEECCTTSSHHHHHHHHHHH
T ss_pred CeEE---EEECCCCCCHHHHHHHHHHH
Confidence 3456 99999999999999999864
No 167
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.35 E-value=2.6e-07 Score=58.61 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=25.0
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
...+|.++ +|+|||||||||+.+.|+...
T Consensus 8 ~~~~~~~i---~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPL---VVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCE---EEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEE---EEECCCCCCHHHHHHHHHHhC
Confidence 47889999 999999999999999987543
No 168
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.34 E-value=4.8e-07 Score=55.02 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=20.8
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56999999999999999999864
No 169
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.34 E-value=1.2e-07 Score=65.70 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=21.9
Q ss_pred EEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 39 TFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 39 ~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
++ +|+||||||||||+++|++++.
T Consensus 94 ii---gI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 II---GIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EE---EEECCTTSSHHHHHHHHHHHHT
T ss_pred EE---EEECCCCCCHHHHHHHHHHHhc
Confidence 66 9999999999999999998765
No 170
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.34 E-value=2.8e-07 Score=57.69 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=25.0
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+|+...++..+ +|+|++||||||+.+.|+.
T Consensus 3 ~~~~~~~~~~I---~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 3 GSMEQPKGINI---LITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ---CCCSSCEE---EEECSTTSSHHHHHHHHHH
T ss_pred cCcCCCCCCEE---EEECCCCCCHHHHHHHHHH
Confidence 78888899988 9999999999999999874
No 171
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.33 E-value=6.2e-08 Score=66.53 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=29.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
+++...+++++ +++|+|||||||+++.|++++.+
T Consensus 97 ~~~~~~~~~vi---~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 97 LNVPPEPPFVI---MVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CCCCSSSCEEE---EEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcccCCCCeEE---EEEcCCCChHHHHHHHHHHHHHh
Confidence 55667889999 99999999999999999987654
No 172
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.32 E-value=6.7e-08 Score=66.58 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=30.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++|++.+++++ +++|+||+||||++..|++.+.+
T Consensus 98 l~~~~~~~~vI---~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 98 IDFKENRLNIF---MLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CCCCTTSCEEE---EEESSTTSSHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEE---EEECCCCCCHHHHHHHHHHHHHH
Confidence 88889999999 99999999999999999986543
No 173
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.31 E-value=2.3e-07 Score=65.85 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=25.6
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++.+|..+ +|+|+||+|||||+++|.|.
T Consensus 16 ~v~~g~~v---giVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKT---GIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSCCEE---EEEECSSSSHHHHHHHHHHS
T ss_pred cccCCCEE---EEECCCCCCHHHHHHHHHCC
Confidence 46889998 99999999999999999993
No 174
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.31 E-value=4.4e-07 Score=56.07 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.5
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++|++|+|||||++.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 56999999999999999999863
No 175
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.30 E-value=2.6e-07 Score=58.04 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=18.9
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|+|++||||||+.++|++
T Consensus 4 i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 49999999999999999987
No 176
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.30 E-value=3e-07 Score=56.94 Aligned_cols=26 Identities=35% Similarity=0.296 Sum_probs=22.6
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+|+++ +|+|++||||||++++|++.
T Consensus 3 ~~g~~i---~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTV---WLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEE---EEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEE---EEECCCCCCHHHHHHHHHHH
Confidence 467888 99999999999999999864
No 177
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.27 E-value=7e-08 Score=70.59 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=32.3
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLV 67 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~~ 67 (68)
+++.+.+|+.+ .|+||||+|||||+++|+++..+.
T Consensus 53 l~~~i~~g~~v---ll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 53 IKTAANQKRHV---LLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHHHHTTCCE---EEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccccCCCEE---EEEeCCCCCHHHHHHHHhccCCcc
Confidence 88899999999 999999999999999999988653
No 178
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.27 E-value=5.9e-07 Score=54.93 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=20.6
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++++++|++|+|||||++.+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35699999999999999999884
No 179
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.26 E-value=6.4e-07 Score=63.54 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=25.9
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHH--HhCCCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNS--LIGHPVL 66 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~--l~Gl~~~ 66 (68)
-+++|+++ .|+||||||||||++. ++++.++
T Consensus 174 GI~~Gei~---~I~G~sGsGKTTLl~~la~~~~~p~ 206 (400)
T 3lda_A 174 GVETGSIT---ELFGEFRTGKSQLCHTLAVTCQIPL 206 (400)
T ss_dssp SEETTSEE---EEEESTTSSHHHHHHHHHHHTTSCG
T ss_pred CcCCCcEE---EEEcCCCCChHHHHHHHHHHhccCc
Confidence 48999999 9999999999999994 4565543
No 180
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.25 E-value=9e-07 Score=57.07 Aligned_cols=27 Identities=48% Similarity=0.726 Sum_probs=23.4
Q ss_pred EeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 40 FLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 40 ~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.++|+|+|++|+|||||++.|.|...+
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 357799999999999999999987654
No 181
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.20 E-value=3e-07 Score=62.55 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=25.6
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
.+|+++ +++|+||+||||++..|++...+
T Consensus 103 ~~g~vi---~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 103 IHSKYI---VLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CCSSEE---EEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEE---EEECCCCCCHHHHHHHHHHHHHH
Confidence 478898 99999999999999999987654
No 182
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.19 E-value=8.3e-07 Score=58.07 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=24.5
Q ss_pred eeEEec---CCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSR---RSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~---~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.++.+. +|.++ +|.|++||||||+++.|+..+
T Consensus 16 ~~~~~~~~~~g~~i---~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 16 ENLYFQSNAMSAFI---TFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp ----CCCCCCCEEE---EEECCTTSCHHHHHHHHHHHH
T ss_pred CCeeEeecCCCeEE---EEEcCCCCCHHHHHHHHHHHH
Confidence 555554 89998 999999999999999997653
No 183
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.19 E-value=2.2e-07 Score=63.06 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=28.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++|+ +++++ +++|+||+||||++..|+++..+
T Consensus 93 i~~~--~~~~i---~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 93 PVLK--DRNLW---FLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp CCCC--SSEEE---EEECCTTTTHHHHHHHHHHHHHH
T ss_pred eecC--CCeEE---EEECCCCCCHHHHHHHHHHHHHH
Confidence 7777 89999 99999999999999999987643
No 184
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.18 E-value=1.4e-06 Score=59.67 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=21.1
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHH
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSL 60 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l 60 (68)
..+++.+| +. +|+|||||||||++.+|
T Consensus 17 ~~i~f~~~-~~---~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 17 TVVEFKEG-IN---LIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEEECCSE-EE---EEECCTTSSHHHHHHHH
T ss_pred eEEcCCCC-eE---EEECCCCCCHHHHHHHH
Confidence 44445443 66 89999999999999976
No 185
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.18 E-value=2.9e-07 Score=62.58 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=23.9
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.++.++ +|+|++|||||||.+.|++++.
T Consensus 29 ~~~~ii---~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFI---FFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEE---EEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEE---EEECCCCCCHHHHHHHHHHHhh
Confidence 456677 9999999999999999987654
No 186
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.17 E-value=1.3e-06 Score=53.77 Aligned_cols=22 Identities=50% Similarity=0.703 Sum_probs=20.2
Q ss_pred eEEEcCCCCCHHHHHHHHhCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++|++|+|||||++.+.+..
T Consensus 7 i~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 3999999999999999999865
No 187
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.17 E-value=1.4e-06 Score=55.45 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.1
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHH
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSL 60 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l 60 (68)
-+++|+++ .|.||||+|||||+..+
T Consensus 19 Gl~~G~~~---~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 19 GIPERNVV---LLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp SEETTCEE---EEEECTTSSHHHHHHHH
T ss_pred CCCCCcEE---EEECCCCCCHHHHHHHH
Confidence 58999999 99999999999996544
No 188
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.15 E-value=1.7e-06 Score=55.53 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=21.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
.++++.+| +. +|+|||||||||++.+|.
T Consensus 17 ~~i~f~~~-~~---~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-IN---LIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EE---EEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eE---EEEcCCCCCHHHHHHHHH
Confidence 44455553 66 899999999999999874
No 189
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.12 E-value=1.8e-06 Score=60.82 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=22.3
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
++++|+|++|+|||||++.|.|...
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcc
Confidence 4569999999999999999999864
No 190
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.10 E-value=1.5e-06 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.0
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
..++ +|+|++||||||+.+.|++
T Consensus 18 ~~~I---~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSI---VVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCE---EEECSTTSCHHHHHHHHHH
T ss_pred CeEE---EEECCCCCCHHHHHHHHHH
Confidence 3466 9999999999999999974
No 191
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.09 E-value=3.9e-07 Score=65.51 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=27.0
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++++.+| +. +|+|+||||||||+.+|..+
T Consensus 54 ~~l~f~~g-~n---~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 54 LELELGGG-FC---AFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEECCCS-EE---EEEESHHHHHHHHTHHHHHH
T ss_pred EEEecCCC-eE---EEEcCCCCCHHHHHHHHHHH
Confidence 88999999 87 99999999999999998544
No 192
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.09 E-value=1.5e-06 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.4
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
+|.++ +++|++||||||+.+.|+
T Consensus 3 ~g~~I---~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAV---IFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEE---EEECCTTSCHHHHHHHHH
T ss_pred CCeEE---EEECCCCCCHHHHHHHHH
Confidence 45566 999999999999999997
No 193
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.09 E-value=2e-06 Score=56.80 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.0
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+++++|++|+|||||++.|.|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4679999999999999999998753
No 194
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.08 E-value=1.1e-06 Score=59.45 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.8
Q ss_pred EEEcCCCCCHHHHHHHHhCCC
Q 035290 44 VALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+|+|++|+|||||++.|.|..
T Consensus 12 aIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 12 AIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEECSSSSSHHHHHHHHHTCS
T ss_pred EEECCCCCCHHHHHHHHHCCC
Confidence 999999999999999999864
No 195
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.07 E-value=1.8e-06 Score=53.64 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=24.7
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+...+|.++ +++|++||||||+.+.|+..
T Consensus 8 ~~~~~~~~i---~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 8 KCIEKGIVV---WLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCCSCCEEE---EEECCTTSSHHHHHHHHHHH
T ss_pred cccCCCcEE---EEEcCCCCCHHHHHHHHHHH
Confidence 345678888 99999999999999999754
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.07 E-value=7.5e-07 Score=61.60 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=21.6
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+.++ +|+|++|||||||++.|.|..
T Consensus 74 ~~~v---~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRV---GLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEE---EEECCTTSSHHHHHHHHHHHH
T ss_pred ceEE---EEEcCCCCCHHHHHHHHHHHh
Confidence 4566 999999999999999998753
No 197
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=1.3e-06 Score=58.63 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.9
Q ss_pred eEEEcCCCCCHHHHHHHHhC-CCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIG-HPVL 66 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G-l~~~ 66 (68)
+.|.||+|+||||+++++++ +..|
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~ 63 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP 63 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 39999999999999999998 5544
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.06 E-value=6.5e-07 Score=61.48 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=28.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++.+.++.++ +++|++|+|||||++.|++..
T Consensus 49 l~~~~~~~~~i---~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 49 IMPYCGNTLRL---GVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HGGGCSCSEEE---EEEECTTSCHHHHHHHHHHHH
T ss_pred CCcccCCCEEE---EEEcCCCCCHHHHHHHHHHHH
Confidence 77888899999 999999999999999998653
No 199
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.06 E-value=2.8e-06 Score=51.37 Aligned_cols=20 Identities=25% Similarity=0.125 Sum_probs=18.1
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|.|++||||||+.+.|+.
T Consensus 4 i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999999999874
No 200
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.04 E-value=3.8e-06 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.9
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+.++ .|+|++||||||+.+.|+.
T Consensus 3 ~~~i---~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMI---ILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEE---EEECCTTSSHHHHHHHHHH
T ss_pred ceEE---EEECCCCCCHHHHHHHHHH
Confidence 3456 9999999999999999875
No 201
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.02 E-value=2.6e-06 Score=54.21 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=25.7
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+.+.+|.++ +|+|++||||||+.+.|++.+
T Consensus 20 ~~~~~~~~i---~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTI---WLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HHTSSCEEE---EEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCEE---EEECCCCCCHHHHHHHHHHHh
Confidence 346788888 999999999999999998643
No 202
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.02 E-value=2.9e-06 Score=50.27 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++++|+.|+|||||++.+.+-.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999887643
No 203
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.02 E-value=4.2e-06 Score=50.17 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.7
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+|+++|++|+|||||++.+.+-.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 467999999999999999998754
No 204
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.01 E-value=3.1e-06 Score=52.14 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=18.2
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
+.|+|++||||||+.+.|+.
T Consensus 7 i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 48999999999999999874
No 205
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.01 E-value=3.4e-06 Score=52.23 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=18.6
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|.|++||||||+.+.|+.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHH
Confidence 49999999999999999986
No 206
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.99 E-value=4.7e-06 Score=51.10 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=19.8
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+.++ +|.|++||||||+.+.|+-
T Consensus 3 ~~~I---~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVV---VVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEE---EEECCTTSCHHHHHHHHHH
T ss_pred CeEE---EEECCCCCCHHHHHHHHHH
Confidence 4456 9999999999999999864
No 207
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.99 E-value=5.9e-06 Score=49.64 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=22.2
Q ss_pred EEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 39 TFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 39 ~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
..++|+++|+.|+|||||++.+.+-.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34577999999999999999998754
No 208
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.99 E-value=4.9e-06 Score=53.77 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=23.3
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+..++.++ +|+|++||||||+.++|++
T Consensus 12 ~~~~~~~i---~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQI---AIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEE---EEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEE---EEECCCCCCHHHHHHHHHH
Confidence 46788888 9999999999999999985
No 209
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.97 E-value=4.2e-06 Score=49.87 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=20.2
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+++++|++|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 679999999999999999987543
No 210
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.97 E-value=3.3e-06 Score=51.83 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.6
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++++|++|+|||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 345999999999999999988754
No 211
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.97 E-value=4.3e-06 Score=51.55 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=17.3
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 035290 44 VALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~ 61 (68)
.|+|++||||||+.+.|+
T Consensus 9 ~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 9 YLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999986
No 212
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.96 E-value=5.9e-06 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.8
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+|+++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999998874
No 213
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.96 E-value=6.2e-06 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.1
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|+.|+|||||++.+.+-
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46799999999999999988764
No 214
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.96 E-value=6.1e-06 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=20.4
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+++++|++|+|||||++.+.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc
Confidence 367999999999999999997643
No 215
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=2.8e-07 Score=62.39 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=28.1
Q ss_pred eeEEecCCCE--EeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSST--FLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~--~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++..++.|++ + .+.||+|+||||+++++++..
T Consensus 37 L~~~i~~g~~~~~---ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 37 VRKFVDEGKLPHL---LFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHTTCCCCE---EEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCceE---EEECCCCCCHHHHHHHHHHHH
Confidence 6777888987 6 999999999999999998754
No 216
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.95 E-value=4.8e-06 Score=57.08 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=23.8
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++++ .+ +++|++|||||||++.|.|..
T Consensus 30 i~~~lp---~I---~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 30 LWDSLP---AI---AVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp --CCCC---EE---EEECBTTSSHHHHHHHHHTSC
T ss_pred ccccCC---EE---EEECCCCCcHHHHHHHHhCCC
Confidence 777776 55 999999999999999999953
No 217
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.95 E-value=4.4e-06 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.7
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++++|+.|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 345999999999999999988764
No 218
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.94 E-value=2.9e-06 Score=64.26 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=27.7
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
|.+++++.+ .|+||+|||||||+++|++...
T Consensus 233 l~i~~~~~v---LL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGI---LLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEE---EECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeE---EEECcCCCCHHHHHHHHHHHcC
Confidence 467889998 9999999999999999998764
No 219
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.94 E-value=6.9e-06 Score=51.13 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.2
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+|.++ +|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I---~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALI---VFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEE---EEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEE---EEEcCCCCCHHHHHHHHHHHH
Confidence 56677 999999999999999998543
No 220
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.94 E-value=5.9e-06 Score=49.42 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.8
Q ss_pred eEEEcCCCCCHHHHHHHH
Q 035290 43 VVALGNVGAGKSAVLNSL 60 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l 60 (68)
++|.|++||||||+.+.|
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 499999999999999988
No 221
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.94 E-value=4.8e-06 Score=51.31 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=20.7
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
.++.++ .+.|++||||||+.+.|+-
T Consensus 3 ~~~~~I---~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALI---IVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEE---EEEESTTSSHHHHHHHHHH
T ss_pred CCCeEE---EEECCCCCCHHHHHHHHHH
Confidence 345566 9999999999999998863
No 222
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.94 E-value=4.7e-06 Score=51.08 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=20.5
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++++|+.|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 456999999999999999998753
No 223
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.93 E-value=2.6e-06 Score=61.90 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=27.5
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+++++ +|+.+ +|+||+|+|||||+++|+++..
T Consensus 102 ~~~~~-~g~~v---ll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 102 LTKSL-KGPIL---CLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HSSSC-CSCEE---EEESSSSSSHHHHHHHHHHHHT
T ss_pred hcccC-CCCEE---EEECCCCCCHHHHHHHHHHhcC
Confidence 55566 78998 9999999999999999998654
No 224
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.93 E-value=5.7e-07 Score=56.44 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=24.0
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++..++.. + +++|++|+|||||++.+.+-
T Consensus 19 ~~~~~~~~k-i---~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 19 LGLYKKTGK-L---VFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HTCTTCCEE-E---EEEEETTSSHHHHHHHHSCC
T ss_pred hhccCCCcE-E---EEECCCCCCHHHHHHHHhcC
Confidence 666655553 3 89999999999999999863
No 225
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.93 E-value=9.6e-06 Score=48.80 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.5
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+|+++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4599999999999999998764
No 226
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.93 E-value=6.4e-06 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.3
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++|++|+|||||++.+.+-.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 56999999999999999998753
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.92 E-value=5.6e-06 Score=53.34 Aligned_cols=18 Identities=44% Similarity=0.680 Sum_probs=16.6
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 035290 44 VALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~ 61 (68)
+|+||||+|||||++.|.
T Consensus 5 Vi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 5 VISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999998774
No 228
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.92 E-value=5.5e-06 Score=57.44 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=20.5
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
+++++|++|+|||||++.|.+...
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 348999999999999999987643
No 229
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.92 E-value=6.1e-06 Score=50.21 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=24.2
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
..+...+++++|++|+|||||++.+.+...
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 344456779999999999999999987543
No 230
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.92 E-value=8.3e-06 Score=48.18 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|+.|+|||||++.+.+-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36799999999999999988754
No 231
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.91 E-value=4.5e-06 Score=54.19 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=18.7
Q ss_pred EEEcCCCCCHHHHHHHHhCC
Q 035290 44 VALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl 63 (68)
.|.||+|+||||++++|++.
T Consensus 49 ll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 49 LMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHH
Confidence 89999999999999999864
No 232
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.91 E-value=8.5e-06 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.738 Sum_probs=19.8
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|+.|+|||||++.+.+-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46799999999999999887654
No 233
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.91 E-value=7.3e-06 Score=53.73 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=21.7
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+|+|+|++|+|||||++.|.|-..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4679999999999999999988643
No 234
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.91 E-value=5.4e-06 Score=49.80 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.0
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|+.|+|||||++.+.+-
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46799999999999999888754
No 235
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.91 E-value=7.9e-06 Score=48.07 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.5
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5699999999999999988754
No 236
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.90 E-value=9e-06 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.0
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|++|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46799999999999999888754
No 237
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.90 E-value=8.8e-06 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++|+++|++|+|||||++.+.+-.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC
Confidence 367999999999999999988754
No 238
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.90 E-value=6.1e-06 Score=49.63 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=20.1
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56799999999999999988753
No 239
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.90 E-value=9.5e-06 Score=47.88 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=18.7
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
+++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 579999999999999988764
No 240
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.90 E-value=9e-06 Score=48.23 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=19.8
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999998886543
No 241
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.90 E-value=9.3e-06 Score=48.29 Aligned_cols=24 Identities=33% Similarity=0.650 Sum_probs=20.6
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+++++|+.|+|||||++.+.+-.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467999999999999999887654
No 242
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.90 E-value=5.7e-06 Score=49.23 Aligned_cols=24 Identities=25% Similarity=0.620 Sum_probs=20.4
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+++++|+.|+|||||++.+.+-.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 467999999999999999887543
No 243
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.89 E-value=6.3e-06 Score=54.62 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.6
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++|+++|++|+|||||++.|.|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 467999999999999999999864
No 244
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.88 E-value=7.8e-06 Score=51.88 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=18.2
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
+|.|++||||||+.+.|+.
T Consensus 8 ~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 8 ALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 9999999999999999986
No 245
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.88 E-value=8.3e-06 Score=49.94 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=18.0
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|.|++||||||+.+.|+-
T Consensus 4 I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999998864
No 246
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.88 E-value=1.3e-05 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.690 Sum_probs=21.0
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+|+++|++|+|||||++.+.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 56999999999999999999864
No 247
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.88 E-value=6.2e-06 Score=49.98 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=18.9
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
+|+++|++|+|||||++.+.+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 569999999999999998874
No 248
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.88 E-value=8.2e-06 Score=50.62 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=18.8
Q ss_pred eEEEcCCCCCHHHHHHHHhCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl 63 (68)
++|+|++||||||+.+.|+..
T Consensus 11 I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHC
Confidence 399999999999999999853
No 249
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.87 E-value=7.9e-06 Score=50.37 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.4
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
+.++..+ .|.|++||||||+.+.|+
T Consensus 8 ~~~~~~i---~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 8 FMLLPNI---LLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp TCCCCCE---EEECSTTSSHHHHHHHHH
T ss_pred cccCCeE---EEEeCCCCCHHHHHHHHH
Confidence 3456667 999999999999999987
No 250
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.87 E-value=1e-05 Score=49.02 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.1
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+|+++|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 56999999999999999887653
No 251
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.87 E-value=8.4e-06 Score=51.45 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=18.0
Q ss_pred eeEEEcCCCCCHHHHHHHHh
Q 035290 42 NVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~ 61 (68)
+++|.|++||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35999999999999999985
No 252
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.87 E-value=7.5e-06 Score=57.11 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=19.9
Q ss_pred eEEEcCCCCCHHHHHHHHhCCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
|+|+|++|+|||||++.|+|...
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCc
Confidence 49999999999999999999765
No 253
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.86 E-value=1.1e-05 Score=55.64 Aligned_cols=28 Identities=21% Similarity=0.461 Sum_probs=22.5
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
..+++.+| +. +|+|+|||||||++.+|.
T Consensus 19 ~~i~f~~g-l~---vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 19 SRIKFEKG-IV---AIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEECCSE-EE---EEEECTTSSHHHHHHHHH
T ss_pred eEEecCCC-eE---EEECCCCCCHHHHHHHHH
Confidence 55566664 55 899999999999998875
No 254
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.86 E-value=1.2e-05 Score=47.72 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.3
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5699999999999999988653
No 255
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.86 E-value=1.1e-05 Score=50.42 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.4
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
..++.++ +|.|++||||||+.+.|+-
T Consensus 7 ~~~~~~I---~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 7 KKKGKFI---VFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CBCSCEE---EEEESTTSSHHHHHHHHHH
T ss_pred hhcCCEE---EEEcCCCCCHHHHHHHHHH
Confidence 3567788 9999999999999999873
No 256
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.85 E-value=1.1e-05 Score=49.73 Aligned_cols=24 Identities=17% Similarity=0.526 Sum_probs=21.0
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
.++.++ +|.|++||||||+.+.|+
T Consensus 7 ~~~~~I---~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 7 KKTNII---FVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TTSCEE---EEEECTTSSHHHHHHHHH
T ss_pred cCCCEE---EEECCCCCCHHHHHHHHH
Confidence 456677 999999999999999987
No 257
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.85 E-value=1.2e-05 Score=48.72 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=21.6
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+...+++++|+.|+|||||++.+.+-
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 44457799999999999999988753
No 258
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.85 E-value=8.5e-06 Score=48.34 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.3
Q ss_pred eeeEEEcCCCCCHHHHHHHHhC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~G 62 (68)
.+++++|+.|+|||||++.+.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3569999999999999988875
No 259
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.85 E-value=9.7e-06 Score=51.26 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=18.0
Q ss_pred eeEEEcCCCCCHHHHHHHHh
Q 035290 42 NVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~ 61 (68)
+++|.|++||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35999999999999999985
No 260
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.84 E-value=1.2e-05 Score=49.25 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=22.0
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
....++|+++|+.|+|||||++.+.+-.
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3334567999999999999999988754
No 261
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.84 E-value=1e-05 Score=50.27 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=19.8
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+.++ +|.|++||||||+.+.|+.
T Consensus 4 ~~~I---~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLI---AFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEE---EEECCTTSSHHHHHHHHHH
T ss_pred CeEE---EEEcCCCCCHHHHHHHHHH
Confidence 4455 9999999999999999874
No 262
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.84 E-value=1.1e-05 Score=48.56 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=19.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|+.|+|||||++.+.+-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36799999999999999988753
No 263
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.84 E-value=1.1e-05 Score=48.95 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=18.1
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
+.+.|++||||||+.+.|+.
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 38999999999999999875
No 264
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.84 E-value=8.8e-06 Score=50.01 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=21.7
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+...+|+++|++|+|||||++.+.+-
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 44457799999999999999988764
No 265
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.83 E-value=1.3e-05 Score=48.34 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.0
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+|+++|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46699999999999999988753
No 266
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.83 E-value=8.9e-06 Score=51.72 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.4
Q ss_pred EEEcCCCCCHHHHHHHHhCC
Q 035290 44 VALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl 63 (68)
+++|++|||||||++.|.+.
T Consensus 10 ~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 10 AFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHh
Confidence 99999999999999988764
No 267
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.83 E-value=1.3e-05 Score=48.46 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.1
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|+.|+|||||++.+.+-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46799999999999999988754
No 268
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.83 E-value=6.3e-06 Score=51.22 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=19.2
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+++..++.. + +++|++|+|||||++.+.+
T Consensus 17 ~~~~~~~~k-i---~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 17 LGLWNKHGK-L---LFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -------CE-E---EEEESTTSSHHHHHHHHHH
T ss_pred hhccCCccE-E---EEECCCCCCHHHHHHHHhc
Confidence 777766653 3 8999999999999998876
No 269
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.83 E-value=9.7e-06 Score=48.37 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=18.7
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
+++++|++|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 569999999999999998864
No 270
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.83 E-value=1.2e-05 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=20.8
Q ss_pred EeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 40 FLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 40 ~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
..+|+++|++|+|||||++.+.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhc
Confidence 356799999999999999999764
No 271
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.82 E-value=1.3e-05 Score=50.03 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=21.8
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
..++.++ +|.|+.||||||+.+.|+
T Consensus 6 ~~~~~~I---~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 6 ARRGALI---VLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp -CCCCEE---EEEESTTSSHHHHHHHHH
T ss_pred ccCCcEE---EEECCCCCCHHHHHHHHH
Confidence 4567788 999999999999999987
No 272
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.82 E-value=1.2e-05 Score=52.23 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=20.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+|+|+|++|+|||||++.|.|-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 456999999999999999998754
No 273
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.82 E-value=1e-05 Score=48.76 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 39 TFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 39 ~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
...+++++|+.|+|||||++.+.+-.
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 33467999999999999999887543
No 274
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.82 E-value=1e-05 Score=48.47 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=22.6
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+...+++++|+.|+|||||++.+.+-.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3444577999999999999999887543
No 275
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.81 E-value=4.8e-06 Score=60.59 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=26.0
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++.+++| + .|+||+|+|||||+++|++..
T Consensus 59 lg~~ip~G--v---LL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 59 MGARIPKG--V---LLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSCCCCSE--E---EEECSSSSSHHHHHHHHHHHT
T ss_pred ccCCCCce--E---EEECCCCCCHHHHHHHHHHHh
Confidence 66777777 5 899999999999999999754
No 276
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.81 E-value=1e-05 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.0
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++|+++|+.|+|||||++.+.+-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46799999999999999988653
No 277
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.81 E-value=1.2e-05 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=20.3
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+|+++|++|+|||||++.|.+-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56999999999999999987654
No 278
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.81 E-value=1.1e-05 Score=53.27 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=18.0
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|+||+|||||||.+.|+.
T Consensus 4 i~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 38999999999999999874
No 279
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.81 E-value=1.2e-05 Score=49.32 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.8
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+|+++|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 356999999999999999988754
No 280
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.81 E-value=1.5e-05 Score=48.67 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=22.4
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+...+++++|+.|+|||||++.+.+-.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCC
Confidence 445677999999999999999887643
No 281
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.81 E-value=1.4e-05 Score=47.84 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.3
Q ss_pred eeeEEEcCCCCCHHHHHHHHhC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~G 62 (68)
.+++++|+.|+|||||++.+.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3569999999999999998874
No 282
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.80 E-value=9.3e-06 Score=50.87 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.6
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 456999999999999999887654
No 283
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.80 E-value=1.6e-05 Score=48.40 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.2
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++++|+.|+|||||++.+.+-.
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46999999999999999988754
No 284
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.80 E-value=1.2e-05 Score=56.49 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=24.4
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++|+++ .|.||+|||||||+..++..
T Consensus 58 i~~G~i~---~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 58 YPRGRIV---EIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EETTEEE---EEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEE---EEECCCCCCHHHHHHHHHHH
Confidence 7899999 99999999999999888753
No 285
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.80 E-value=1.1e-05 Score=49.31 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.0
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+|+++|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46799999999999999988754
No 286
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.80 E-value=3.8e-06 Score=60.15 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=27.8
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVL 66 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~~ 66 (68)
++|+ +++++ +++|++|+||||++..|++.+.+
T Consensus 93 i~l~--~~~vi---~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 93 PVLK--DRNLW---FLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp CCCC--SSEEE---EEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCC--CCeEE---EEECCCCCCHHHHHHHHHHHHHH
Confidence 7776 88888 99999999999999999987644
No 287
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.80 E-value=1.7e-05 Score=47.79 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=20.1
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|+.|+|||||++.+.+-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46799999999999999888754
No 288
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.80 E-value=1.6e-05 Score=49.19 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.0
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+|+++|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 567999999999999999887654
No 289
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.79 E-value=1.5e-05 Score=48.35 Aligned_cols=24 Identities=33% Similarity=0.733 Sum_probs=20.4
Q ss_pred EeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 40 FLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 40 ~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
..+++++|+.|+|||||++.+.+-
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356799999999999999988654
No 290
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.79 E-value=1.7e-05 Score=60.99 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=24.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHH
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVL 57 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl 57 (68)
|+++|+++.++ ++.|.||||||||.
T Consensus 29 i~v~iP~~~l~---viTGvSGSGKSSLa 53 (842)
T 2vf7_A 29 ISVKVPRDALV---VFTGVSGSGKSSLA 53 (842)
T ss_dssp EEEEEESSSEE---EEESSTTSSHHHHH
T ss_pred eeEEecCCCEE---EEECCCCCCHHHHH
Confidence 99999999999 99999999999996
No 291
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.79 E-value=2.9e-06 Score=60.00 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=27.9
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++.+++|+. ++++|+|++||||||+.++|++.
T Consensus 15 l~~~i~~g~~-~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 15 LDNRIEDNYR-VCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHTTTTCSC-EEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhccCCe-eEEEEECCCCCcHHHHHHHHHHH
Confidence 6677888988 24499999999999999999864
No 292
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.78 E-value=1.7e-05 Score=49.12 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=21.9
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+...+|+++|+.|+|||||++.+.+-.
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444567999999999999999998643
No 293
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.78 E-value=1.2e-05 Score=53.26 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=21.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
|.|+++|+.++|||||++.|.|...
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 4569999999999999999998753
No 294
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.78 E-value=1.7e-05 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.3
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++|+++|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35699999999999999998875
No 295
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.78 E-value=1.1e-05 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.9
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 679999999999999988864
No 296
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.78 E-value=6.8e-06 Score=53.89 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=23.8
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
...++..+ .++|++||||||+.+.|+..+
T Consensus 28 ~~~~~~~i---~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 28 SSKQPIAI---LLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CCSSCEEE---EEESCGGGTTHHHHHHHHHHT
T ss_pred cccCCeEE---EEECCCCCCHHHHHHHHHHhc
Confidence 35566677 999999999999999987643
No 297
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.78 E-value=1.5e-05 Score=53.07 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=17.6
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 035290 44 VALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~ 61 (68)
+|.||+||||||+.+.|+
T Consensus 13 ~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 13 AVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999998
No 298
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.78 E-value=5.3e-06 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.3
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++|+++|+.|+|||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 456999999999999999998865
No 299
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.77 E-value=4.7e-06 Score=52.24 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.5
Q ss_pred eEEEcCCCCCHHHHHHHHhCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl 63 (68)
++|.|++||||||+++.|+..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 399999999999999998753
No 300
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.77 E-value=1.3e-05 Score=49.41 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=17.9
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|+|++||||||+.+.|+-
T Consensus 5 I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999999998863
No 301
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.77 E-value=1.2e-05 Score=52.68 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=22.1
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
++|+++|..++|||||++.|.|...
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 5569999999999999999998754
No 302
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.76 E-value=1.6e-05 Score=48.67 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=16.9
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 035290 44 VALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~ 61 (68)
+|.|++||||||+.+.|+
T Consensus 7 ~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 7 FVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999885
No 303
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.76 E-value=2.1e-05 Score=47.67 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=19.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+|+++|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46799999999999999988753
No 304
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.76 E-value=1.3e-05 Score=49.05 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.5
Q ss_pred eeeEEEcCCCCCHHHHHHHHhC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~G 62 (68)
.+|+++|+.|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3569999999999999998875
No 305
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.75 E-value=1.8e-05 Score=47.91 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=18.1
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|.|++||||||+.+.|+-
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 59999999999999999864
No 306
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.75 E-value=1.8e-05 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.2
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++++|+.|+|||||++.|.|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 357999999999999999999864
No 307
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.75 E-value=1.8e-05 Score=48.79 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=18.0
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|.|++||||||+.+.|+-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 39999999999999999863
No 308
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.75 E-value=1.6e-05 Score=48.22 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.0
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|.|++||||||+.+.|+-
T Consensus 5 I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 39999999999999999863
No 309
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.75 E-value=2e-05 Score=52.17 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.2
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+++++|++|+|||||++.+.|..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 356999999999999999998854
No 310
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.75 E-value=2.2e-05 Score=48.46 Aligned_cols=24 Identities=33% Similarity=0.743 Sum_probs=20.4
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+|+++|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467999999999999999887643
No 311
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.74 E-value=1.9e-05 Score=47.79 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHh
Q 035290 41 LNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~ 61 (68)
.+++++|+.|+|||||++.+.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 467999999999999998886
No 312
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.74 E-value=2.2e-05 Score=49.07 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=22.3
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+...+|+++|+.|+|||||++.+.+-.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 444577999999999999999987643
No 313
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.74 E-value=1.5e-05 Score=53.72 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=20.8
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
.++..+ .|.||+||||||+.+.|+.
T Consensus 31 ~~~~li---vl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAF---LLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEE---EEECCTTSCTHHHHHHHHH
T ss_pred CCCeEE---EEECCCCCCHHHHHHHHHH
Confidence 345566 9999999999999998863
No 314
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.74 E-value=2.2e-05 Score=48.11 Aligned_cols=22 Identities=14% Similarity=0.490 Sum_probs=19.5
Q ss_pred eeeEEEcCCCCCHHHHHHHHhC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~G 62 (68)
.+|+++|+.|+|||||++.+.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4679999999999999988864
No 315
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.74 E-value=1.5e-05 Score=49.28 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=20.9
Q ss_pred EeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 40 FLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 40 ~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
..+|+++|+.|+|||||++.+.+-.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3467999999999999999887543
No 316
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.74 E-value=2.2e-05 Score=48.13 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=22.2
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+...+|+++|+.|+|||||++.+.+-.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 445577999999999999999887643
No 317
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.74 E-value=2.1e-05 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.4
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+|+++|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5699999999999999988753
No 318
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.74 E-value=1.2e-05 Score=49.65 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=21.7
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+.++.++ +|.|++||||||+.+.|+.
T Consensus 9 ~~~~~~I---~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 9 LRKCKII---FIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHHSCEE---EEEECTTSSHHHHHHHHHH
T ss_pred cCCCCEE---EEECCCCCCHHHHHHHHHH
Confidence 3455677 9999999999999999863
No 319
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.74 E-value=1.6e-05 Score=47.96 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.7
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 569999999999999988764
No 320
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.73 E-value=2.1e-05 Score=48.87 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.7
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+++++|+.|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 467999999999999999887643
No 321
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.73 E-value=2.1e-05 Score=49.05 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=21.2
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+...+|+++|+.|+|||||++.+.+-
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34457799999999999999988764
No 322
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.73 E-value=2.2e-05 Score=48.73 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=22.0
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
.+++...+++++|++|+|||||++.+.+-..
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3444445679999999999999998887543
No 323
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.73 E-value=2.2e-05 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|++|+|||||++.+.+-
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36699999999999999988754
No 324
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.72 E-value=1.8e-05 Score=54.35 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.2
Q ss_pred eEEEcCCCCCHHHHHHHHhCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++|++|+|||||++.|++..
T Consensus 170 v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 170 VVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp EEEECSTTSSHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4999999999999999999865
No 325
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.72 E-value=8.6e-06 Score=60.56 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=24.3
Q ss_pred eEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 31 SSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 31 s~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++++++.+ +|+|++|+|||||++.|.+..
T Consensus 3 s~~~~~~~~i---~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 3 TEGGAMIRTV---ALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp ---CCCEEEE---EEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCCcEE---EEECCCCChHHHHHHHHHHhc
Confidence 3556777777 999999999999999998543
No 326
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.72 E-value=2.7e-05 Score=49.50 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.2
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
++-++ +|+|+.||||||+.+.|+-
T Consensus 3 ~~~~I---~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRM---VLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEE---EEECCTTSSHHHHHHHHHH
T ss_pred CCcEE---EEECCCCCCHHHHHHHHHH
Confidence 44556 9999999999999998863
No 327
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.72 E-value=1.6e-05 Score=48.92 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 39 TFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 39 ~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
...+|+++|+.|+|||||++.+.+-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 3456799999999999999988753
No 328
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.71 E-value=1.9e-05 Score=48.27 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.6
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+|+++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5699999999999999998764
No 329
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.71 E-value=2.3e-05 Score=47.75 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=18.1
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|.|+.||||||+.+.|+-
T Consensus 10 i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999999999863
No 330
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.71 E-value=1.9e-05 Score=48.90 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=17.7
Q ss_pred eeeEEEcCCCCCHHHHHHHHh
Q 035290 41 LNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~ 61 (68)
.+++++|++|+|||||++.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 367999999999999996544
No 331
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.71 E-value=2.3e-05 Score=47.91 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=17.2
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 035290 44 VALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~ 61 (68)
+|.|++||||||+.+.|+
T Consensus 10 ~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 10 FVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999886
No 332
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.71 E-value=2.7e-05 Score=48.25 Aligned_cols=23 Identities=26% Similarity=0.655 Sum_probs=19.8
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+|+++|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35699999999999999988754
No 333
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.70 E-value=2.7e-05 Score=48.04 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.0
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++++|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5699999999999999988764
No 334
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.69 E-value=2.7e-05 Score=48.36 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 39 TFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 39 ~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
...+|+++|+.|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456799999999999999988754
No 335
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.69 E-value=2.6e-05 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=19.6
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
++.++ +|.|++||||||+.+.|+
T Consensus 6 ~~~~I---~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRA---VIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEE---EEEECTTSSHHHHHHHHH
T ss_pred cCcEE---EEECCCCCCHHHHHHHHH
Confidence 44566 999999999999999987
No 336
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.69 E-value=1.5e-05 Score=53.33 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=24.7
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+.++..+ .|.||+|+|||||+++|+...
T Consensus 45 ~~~~~~~v---LL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGV---LFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEE---EEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceE---EEECCCCcCHHHHHHHHHHHh
Confidence 45777887 999999999999999998643
No 337
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.69 E-value=2.6e-05 Score=48.51 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=18.4
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|.|++||||||+.+.|+.
T Consensus 5 i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 39999999999999999976
No 338
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.69 E-value=2.7e-05 Score=54.00 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=23.1
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
-+++|+++ .|.||+|+|||||+..++
T Consensus 57 Gl~~G~iv---~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 57 GLPRGRVI---EIYGPESSGKTTVALHAV 82 (349)
T ss_dssp SEETTSEE---EEEESTTSSHHHHHHHHH
T ss_pred CccCCeEE---EEECCCCCCHHHHHHHHH
Confidence 37899999 999999999999987765
No 339
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.69 E-value=2.1e-05 Score=48.41 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.7
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+|+++|+.|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35699999999999999988753
No 340
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.68 E-value=2.1e-05 Score=48.80 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.1
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+|+++|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46799999999999999988754
No 341
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.68 E-value=2.1e-05 Score=48.39 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=21.3
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+...+++++|+.|+|||||++.+.+-
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 33456799999999999999888754
No 342
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.68 E-value=3.1e-05 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=19.8
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+|+++|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35699999999999999988754
No 343
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.68 E-value=1.9e-05 Score=47.63 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.6
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
+++++|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 459999999999999988864
No 344
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.68 E-value=1.6e-05 Score=49.74 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=20.1
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+|+++|+.|+|||||++.+.+-
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46799999999999999988754
No 345
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.68 E-value=2e-05 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=15.7
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
++.++ .|.|++||||||+.+.|+
T Consensus 4 ~~~~I---~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPII---WINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEE---EEECCC----CHHHHHHH
T ss_pred CCeEE---EEECCCCCCHHHHHHHHH
Confidence 34566 999999999999999987
No 346
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.68 E-value=2e-05 Score=49.55 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=18.5
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
+++++|+.|+|||||++.|++
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 459999999999999988764
No 347
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.68 E-value=2.1e-05 Score=55.99 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=24.1
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+..+..+ +|+|++|+|||||++.|.|.
T Consensus 18 ~i~~~~kv---gIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKI---GIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCE---EEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEE---EEECCCCCCHHHHHHHHHCC
Confidence 35677777 99999999999999999987
No 348
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.68 E-value=2.2e-05 Score=48.47 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=19.8
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35699999999999999888754
No 349
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.67 E-value=2.1e-05 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.0
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+|+++|+.|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 35699999999999999988764
No 350
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.67 E-value=2.2e-05 Score=48.93 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=19.7
Q ss_pred eeeEEEcCCCCCHHHHHHHHhC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~G 62 (68)
.+|+++|++|+|||||++.+.|
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4679999999999999998875
No 351
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.67 E-value=2.5e-05 Score=49.60 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.4
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
+++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 459999999999999998863
No 352
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.66 E-value=2.2e-05 Score=54.12 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=20.7
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+..+ .|+|++||||||+++.|+..
T Consensus 34 ~~~~~---~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNW---TILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCE---EEECCTTSSHHHHHHHHHHH
T ss_pred ccCce---EEEcCCCCCHHHHHHHHHHH
Confidence 34455 89999999999999988754
No 353
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.66 E-value=3.1e-05 Score=48.38 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=17.1
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 035290 44 VALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~ 61 (68)
+|.|++||||||+.+.|+
T Consensus 19 ~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 19 FVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999998886
No 354
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.66 E-value=2.9e-05 Score=50.99 Aligned_cols=24 Identities=50% Similarity=0.821 Sum_probs=21.4
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+|+++|++|+|||||++.|.|-.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 467999999999999999998865
No 355
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.66 E-value=1.7e-05 Score=48.11 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=10.2
Q ss_pred EeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 40 FLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 40 ~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
..+++++|+.|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356799999999999999988754
No 356
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.66 E-value=2.7e-05 Score=49.54 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=17.2
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 035290 44 VALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~ 61 (68)
+|+|++||||||+.+.|+
T Consensus 9 ~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 9 MISGAPASGKGTQCELIK 26 (222)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999986
No 357
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.66 E-value=3e-05 Score=47.50 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=18.0
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|.|+.||||||+.+.|+-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999999999863
No 358
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.66 E-value=3.5e-05 Score=47.40 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=22.1
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
..+...+++++|++|+|||||++.+.+-.
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34444577999999999999999887643
No 359
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.66 E-value=3.2e-05 Score=48.75 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=19.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|+.|+|||||++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46799999999999999998763
No 360
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.66 E-value=3.1e-05 Score=48.91 Aligned_cols=25 Identities=24% Similarity=0.591 Sum_probs=21.0
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+...+++++|++|+|||||++.+.+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHh
Confidence 4456779999999999999987764
No 361
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.65 E-value=3.2e-05 Score=52.43 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=19.9
Q ss_pred eEEEcCCCCCHHHHHHHHhCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
|+|+|++|+|||||++.|.|..
T Consensus 10 V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 10 VAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 4999999999999999998854
No 362
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.65 E-value=9.3e-06 Score=55.26 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=25.9
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++.+ ++++ +++|++|+||||++..|++..
T Consensus 92 i~~~~~-~~vi---~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 92 VIPDKI-PYVI---MLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CSCSSS-SEEE---EEECSSCSSTTHHHHHHHHHH
T ss_pred cccCCC-CeEE---EEECCCCCCHHHHHHHHHHHH
Confidence 555555 8888 999999999999999998654
No 363
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.64 E-value=4.1e-05 Score=47.94 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.1
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
++-++ +|.|+.||||||+.+.|+.
T Consensus 19 ~~~~I---~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRV---LLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEE---EEECCTTSSHHHHHHHHHH
T ss_pred CCeEE---EEECCCCCCHHHHHHHHHH
Confidence 34466 9999999999999999863
No 364
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.64 E-value=2.3e-05 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=19.6
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++++++|++|+|||||++.+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35699999999999999888653
No 365
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.64 E-value=3.5e-05 Score=60.31 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=24.2
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHH
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVL 57 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl 57 (68)
|+++|++++++ ++.|.||||||||.
T Consensus 39 i~v~iP~~~lv---v~tG~SGSGKSSLa 63 (993)
T 2ygr_A 39 VDLDLPRDALI---VFTGLSGSGKSSLA 63 (993)
T ss_dssp EEEEEESSSEE---EEEESTTSSHHHHH
T ss_pred eeeeccCCCEE---EEECCCCCcHHHHH
Confidence 99999999999 99999999999985
No 366
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.64 E-value=2.1e-05 Score=55.66 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.2
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++|+|+|++|+|||||++.|.|-
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 34599999999999999999874
No 367
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.64 E-value=3.6e-05 Score=60.10 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=24.2
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHH
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVL 57 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl 57 (68)
|+++|++++++ ++.|.||||||||.
T Consensus 37 i~v~iP~~~lv---v~tG~SGSGKSSLa 61 (972)
T 2r6f_A 37 IDVEIPRGKLV---VLTGLSGSGKSSLA 61 (972)
T ss_dssp EEEEEETTSEE---EEEESTTSSHHHHH
T ss_pred eeeeccCCcEE---EEECCCCCCHHHHH
Confidence 99999999999 99999999999985
No 368
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.63 E-value=3.5e-05 Score=47.84 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.9
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
+|+++|+.|+|||||++.+.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 469999999999999998865
No 369
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.63 E-value=3.4e-05 Score=50.77 Aligned_cols=25 Identities=40% Similarity=0.721 Sum_probs=21.8
Q ss_pred EeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 40 FLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 40 ~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.++++++|++|+|||||++.|.+-.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567999999999999999998754
No 370
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.62 E-value=3.7e-05 Score=50.14 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=18.2
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
|+|.|++||||||+.+.|+.
T Consensus 25 I~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999999999865
No 371
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.62 E-value=3.4e-05 Score=48.15 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=17.7
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
.|.||+|+|||||++.++.
T Consensus 58 ~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 58 YLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999998874
No 372
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.62 E-value=2e-05 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=19.6
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|++|+|||||++.+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35699999999999999887653
No 373
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.62 E-value=2.8e-05 Score=47.58 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=18.8
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
+++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 569999999999999998864
No 374
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.62 E-value=2.1e-05 Score=55.25 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.0
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++|+|++|+|||||++.|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5699999999999999999875
No 375
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.61 E-value=3.7e-05 Score=46.07 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=19.4
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
...+ .|.||.|+||||+++.++.
T Consensus 43 ~~~~---ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNP---VLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEE---EEECCTTSCHHHHHHHHHH
T ss_pred CCce---EEECCCCCCHHHHHHHHHH
Confidence 3555 8999999999999988864
No 376
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.61 E-value=3.9e-05 Score=47.76 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.1
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+|+++|+.|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46799999999999999988764
No 377
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.61 E-value=4e-05 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.6
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
++-.+ +|.|++||||||+.+.|+
T Consensus 28 ~~~~I---~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRY---IFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEE---EEECCTTSSHHHHHHHHH
T ss_pred CCcEE---EEECCCCCCHHHHHHHHH
Confidence 44455 999999999999999886
No 378
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.60 E-value=4.2e-05 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.7
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+|+++|++|+|||||++.+.+-.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 467999999999999999887643
No 379
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.60 E-value=2.7e-05 Score=50.20 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.7
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHH
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSL 60 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l 60 (68)
+.+|+.+ ++.||+||||||++..+
T Consensus 73 i~~g~~~---~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 73 ISQNSVV---IIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HHHCSEE---EEECCTTSSHHHHHHHH
T ss_pred HhcCCEE---EEEeCCCCCcHHhHHHH
Confidence 5678988 99999999999987655
No 380
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.60 E-value=2.6e-05 Score=60.37 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=24.2
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHH
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVL 57 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl 57 (68)
++++|++++++ ++.|.||||||||.
T Consensus 17 i~~~ip~~~l~---v~tG~SGSGKSsLa 41 (916)
T 3pih_A 17 ITVRIPKNRLV---VITGVSGSGKSSLA 41 (916)
T ss_dssp BCCEEETTSEE---EEEESTTSSSHHHH
T ss_pred ceeccCCCcEE---EEECCCCCcHHHHH
Confidence 99999999999 99999999999985
No 381
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.59 E-value=3.2e-05 Score=47.45 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 39 TFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 39 ~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
...+++++|+.|+|||||++.+.+-
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3346799999999999999888753
No 382
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.59 E-value=3.5e-05 Score=47.55 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=18.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHhC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~G 62 (68)
.+|+++|+.|+|||||++.+.+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHh
Confidence 3669999999999999977764
No 383
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.59 E-value=4.5e-05 Score=55.86 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=27.8
Q ss_pred eeeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 29 NSSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 29 ~vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
.+.+++.++..+ .|.|++||||||+++.|..
T Consensus 159 pv~ldL~~~pHl---LIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHL---LVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSE---EEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceE---EEECCCCCCHHHHHHHHHH
Confidence 488899999898 9999999999999998764
No 384
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.59 E-value=5.1e-05 Score=47.48 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.7
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
++..+ .|.||+|+|||||++.++.
T Consensus 51 ~~~~~---ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAI---YLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEE---EEECSTTSSHHHHHHHHHH
T ss_pred CCCeE---EEECCCCCCHHHHHHHHHH
Confidence 45666 9999999999999998864
No 385
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.58 E-value=4.3e-05 Score=49.11 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=17.6
Q ss_pred eEEEcCCCCCHHHHHHHHh
Q 035290 43 VVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~ 61 (68)
++|.|++||||||+.+.|+
T Consensus 3 I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999886
No 386
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.58 E-value=4e-05 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.3
Q ss_pred EEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 39 TFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 39 ~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+ .|.||+|+|||||++.+++..
T Consensus 46 ~~---li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RA---TLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EE---EEECCTTSSHHHHHHHHHHHH
T ss_pred eE---EEECCCCCCHHHHHHHHHHHH
Confidence 66 999999999999999987654
No 387
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.57 E-value=4.6e-05 Score=47.99 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=18.5
Q ss_pred eeeEEEcCCCCCHHHHHHHHhC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~G 62 (68)
++++++|..|+|||||++-++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4569999999999999977653
No 388
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.56 E-value=1.5e-05 Score=48.96 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=4.5
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+|+++|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35699999999999999988765
No 389
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.54 E-value=5.2e-05 Score=50.47 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=21.4
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++..+ .|.||+|+|||||++.+++.
T Consensus 44 ~~~~v---li~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNI---FIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCE---EEEECTTSSHHHHHHHHHHH
T ss_pred CCCeE---EEECCCCCCHHHHHHHHHHH
Confidence 45667 99999999999999998753
No 390
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.53 E-value=6.5e-05 Score=47.52 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=21.9
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+...+|+++|+.|+|||||++.+.+-.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 334577999999999999999887643
No 391
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.53 E-value=6.6e-05 Score=48.32 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=20.9
Q ss_pred EeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 40 FLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 40 ~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
..+|+|+|++|+|||||++.+.|.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356799999999999999998864
No 392
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.52 E-value=5.5e-05 Score=50.60 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=17.7
Q ss_pred eEEEcCCCCCHHHHHHHHh
Q 035290 43 VVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~ 61 (68)
++|.|++||||||+.+.|+
T Consensus 78 I~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4999999999999999987
No 393
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.52 E-value=4.6e-05 Score=47.59 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=21.3
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+...+|+++|+.|+|||||++.+.+-
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 44457799999999999999888653
No 394
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.52 E-value=5.8e-05 Score=49.64 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=17.6
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
.+.|++||||||+.+.|+.
T Consensus 8 vl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 8 ILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 9999999999999998863
No 395
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.51 E-value=6.6e-05 Score=47.85 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=17.9
Q ss_pred EEEcCCCCCHHHHHHHHhCC
Q 035290 44 VALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl 63 (68)
+++|++|||||||+..|+..
T Consensus 8 ~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 8 QVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999887654
No 396
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.51 E-value=5.7e-05 Score=51.87 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=24.2
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
-+++|+++ .|.||+|+|||||+..++.
T Consensus 118 Gl~~G~i~---~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 118 GIESMAIT---EAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SBCSSEEE---EEECCTTCTHHHHHHHHHH
T ss_pred CCCCCeEE---EEECCCCCCHHHHHHHHHH
Confidence 47899999 9999999999999987765
No 397
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.51 E-value=4e-05 Score=46.11 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=17.4
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
.|.||+|+||||+++.++.
T Consensus 47 ll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 47 ILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp EEESCGGGCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999988864
No 398
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.50 E-value=7e-05 Score=47.98 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=18.1
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|.|..||||||+.+.|+-
T Consensus 15 IgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999999999873
No 399
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.49 E-value=7.2e-05 Score=47.67 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=17.5
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
+|+|+.||||||+.+.|+-
T Consensus 9 ~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 9 ILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 9999999999999999863
No 400
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.49 E-value=7.8e-05 Score=49.00 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=21.2
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+...+ .|.||+|+||||+++.+++.
T Consensus 53 ~~~~v---ll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGL---LLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEE---EEESSSSSCHHHHHHHHHHH
T ss_pred CCCeE---EEECcCCCCHHHHHHHHHHH
Confidence 35566 89999999999999999864
No 401
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.48 E-value=7.9e-05 Score=52.73 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=26.4
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+..-+++|+++ .|.|++|+|||||+..+++
T Consensus 196 ~~gGl~~G~li---iI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 196 MTSGFQRSDLI---IVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp HHSSBCTTCEE---EEECCTTSCHHHHHHHHHH
T ss_pred hcCCCCCCCEE---EEECCCCCCHHHHHHHHHH
Confidence 44569999999 9999999999999988765
No 402
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.48 E-value=6.3e-05 Score=50.79 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=19.9
Q ss_pred eEEEcCCCCCHHHHHHHHhCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
|+++|+.|+|||||++.|.|..
T Consensus 13 v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 3999999999999999998854
No 403
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.48 E-value=7.3e-05 Score=46.77 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.3
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
+++++|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 569999999999999977753
No 404
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.47 E-value=5.1e-05 Score=51.98 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=21.8
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
|+|+++|..++|||||++.|.|...
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCc
Confidence 4559999999999999999998653
No 405
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.46 E-value=6.3e-05 Score=47.58 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=19.5
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+++++|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35699999999999999887653
No 406
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.45 E-value=3.9e-05 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=16.6
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
.-++ +|.|++||||||+.+.|+.
T Consensus 5 ~~iI---gItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPII---SVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEE---EEESCC---CCTHHHHHHH
T ss_pred ceEE---EEECCCCCCHHHHHHHHHH
Confidence 3456 9999999999999998864
No 407
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.45 E-value=9.2e-05 Score=50.24 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=24.0
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
-+++|+++ .|.|++|+|||||+..++.
T Consensus 103 Gl~~G~i~---~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMT---EFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEE---EEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEE---EEECCCCCCHhHHHHHHHH
Confidence 47899999 9999999999999987764
No 408
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.45 E-value=7.9e-05 Score=47.75 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=20.6
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
.....+ .|.||+|+|||++.+.++.
T Consensus 37 ~~~~~v---ll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGA---LLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEE---EEESCTTSSHHHHHHHHHH
T ss_pred CCCceE---EEECCCCCCHHHHHHHHHH
Confidence 444455 8999999999999999875
No 409
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.45 E-value=5.5e-05 Score=53.22 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.9
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++|+|.+++|||||++.|.+-
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4599999999999999999874
No 410
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.44 E-value=9.4e-05 Score=46.02 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.2
Q ss_pred eeeEEEcCCCCCHHHHHHHHhC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~G 62 (68)
.+++++|+.|+|||||++.+.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3569999999999999988764
No 411
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.42 E-value=2.8e-05 Score=48.27 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=22.6
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+...+|+++|++|+|||||++.+.+-.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999887643
No 412
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.42 E-value=0.00012 Score=47.07 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=19.8
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
++..+ .|+|+.||||||+.+.|+
T Consensus 15 ~~~~I---~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRA---VLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEE---EEECCTTSSHHHHHHHHH
T ss_pred CCeEE---EEECCCCCCHHHHHHHHH
Confidence 34556 999999999999999986
No 413
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.42 E-value=9.5e-05 Score=48.74 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=18.0
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
+.|.|++||||||+.+.|+-
T Consensus 5 I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 38999999999999999874
No 414
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.40 E-value=6.9e-05 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.4
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++|+|+|++++|||||++.|.|-
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35699999999999999999874
No 415
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.40 E-value=0.00012 Score=47.77 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=21.9
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
.+...+ .|.||+|+|||+|++.++..
T Consensus 49 ~~~~~~---ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGI---LLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEE---EEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeE---EEECCCCCcHHHHHHHHHHH
Confidence 455666 89999999999999999754
No 416
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.39 E-value=9.7e-05 Score=45.48 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=17.4
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
.|.||+|+|||||++.++.
T Consensus 49 ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 49 LFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEECSTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999998864
No 417
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.39 E-value=6.9e-05 Score=47.14 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=17.2
Q ss_pred eeeEEEcCCCCCHHHHHHH
Q 035290 41 LNVVALGNVGAGKSAVLNS 59 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~ 59 (68)
.+|+++|+.|+|||||++.
T Consensus 16 ~ki~v~G~~~~GKSsli~~ 34 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKR 34 (221)
T ss_dssp EEEEEEECTTSSHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4679999999999999987
No 418
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.39 E-value=9.9e-05 Score=48.48 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEcCCCCCHHHHHHHHhCCC
Q 035290 44 VALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+.||+|+||||+.++|+...
T Consensus 51 ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 51 LFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEESCSSSSHHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHHHH
Confidence 899999999999999998653
No 419
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.38 E-value=6.9e-05 Score=54.23 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=22.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+.+.+++| + .|+||+|+|||||++++++.
T Consensus 44 ~g~~~p~g--v---LL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 44 IGARMPKG--I---LLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp TTCCCCSE--E---EEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCe--E---EEECCCCCCHHHHHHHHHHH
Confidence 33444544 5 89999999999999999863
No 420
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.37 E-value=0.0001 Score=45.02 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=17.4
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
.|.||.|+|||++++.++.
T Consensus 42 ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 42 LFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999988864
No 421
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.36 E-value=0.00014 Score=51.14 Aligned_cols=27 Identities=33% Similarity=0.403 Sum_probs=22.2
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
.-.+..++ .++|++||||||+.+.|+.
T Consensus 254 ~~~~~~lI---il~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 254 LSPNPEVV---VAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCSSCCEE---EEESCTTSSHHHHHHHHTG
T ss_pred CCCCCEEE---EEECCCCCCHHHHHHHHHH
Confidence 33456777 9999999999999999864
No 422
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.36 E-value=0.00013 Score=48.58 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=20.5
Q ss_pred eEEEcCCCCCHHHHHHHHhCCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
++++|.+|+|||||++.|.|-..
T Consensus 102 v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 102 VLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp EEEEESTTSSHHHHHHHHHTTCC
T ss_pred eEEeCCCCCCHHHHHHHHhcccc
Confidence 39999999999999999998654
No 423
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.35 E-value=0.00011 Score=49.05 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.3
Q ss_pred EEEcCCCCCHHHHHHHHhCC
Q 035290 44 VALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl 63 (68)
.|.||+|+|||||++.++..
T Consensus 41 ll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 41 FIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp EEECSSSSSHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 89999999999999998753
No 424
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.34 E-value=0.00011 Score=48.45 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=19.0
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
+..+|-++ ++.|++||||||+.+.|+
T Consensus 21 ~m~~g~~I---~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 21 SMARGKFI---TFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp --CCCCEE---EEECCC---CHHHHHHHH
T ss_pred cccCCeEE---EEECCCCCCHHHHHHHHH
Confidence 34688888 999999999999999876
No 425
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.29 E-value=0.00023 Score=44.99 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.5
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHH
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSL 60 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l 60 (68)
+++|+.+ .|.|++|+|||+|+.-+
T Consensus 27 l~~G~l~---~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTV---LLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEE---EEECCTTSSHHHHHHHH
T ss_pred CCCCeEE---EEEeCCCCCHHHHHHHH
Confidence 7899999 99999999999997543
No 426
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.28 E-value=0.00017 Score=50.18 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=18.0
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|+||+|||||||.+.|+.
T Consensus 8 i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 38999999999999998874
No 427
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.38 E-value=3.8e-05 Score=47.71 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.4
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
+|+++|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 569999999999999987764
No 428
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.28 E-value=0.00012 Score=47.85 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=22.3
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
..++.++ +|.|+.||||||+.+.|+-.+
T Consensus 21 ~~~~~~I---~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKI---SIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEE---EEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEE---EEECCCCCCHHHHHHHHHHhc
Confidence 3566677 999999999999999987543
No 429
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.28 E-value=0.00024 Score=47.87 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.4
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++++|++|+|||||++.+.+-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5699999999999999987654
No 430
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.28 E-value=0.00014 Score=48.32 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=18.4
Q ss_pred EEEcCCCCCHHHHHHHHhCC
Q 035290 44 VALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl 63 (68)
.|.||+|+||||+++.++..
T Consensus 62 ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 62 LFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 89999999999999998764
No 431
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.28 E-value=0.00017 Score=46.86 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=21.0
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
.+|.++ ++.|++||||||+.+.|+-
T Consensus 4 m~g~~i---~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFV---TLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEE---EEECSTTSSHHHHHHHHHH
T ss_pred CCceEE---EEEcCCCCCHHHHHHHHHH
Confidence 457788 9999999999999998853
No 432
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.27 E-value=0.00016 Score=46.60 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=18.1
Q ss_pred EEEcCCCCCHHHHHHHHhCC
Q 035290 44 VALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl 63 (68)
++.|+.||||||+.+.|+-.
T Consensus 6 ~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 6 SIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEECTTSSHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 99999999999999998743
No 433
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.27 E-value=0.00014 Score=50.85 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=17.9
Q ss_pred EEEcCCCCCHHHHHHHHhCC
Q 035290 44 VALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl 63 (68)
+|+||+|||||||.+.|+..
T Consensus 11 ~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 11 VIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCcCcHHHHHHHHHHH
Confidence 99999999999999888743
No 434
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.27 E-value=6.8e-05 Score=48.61 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=17.7
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
.|.||+|+|||+|++.++.
T Consensus 48 ll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 48 LLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCBCSSCSSHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 7899999999999999975
No 435
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.27 E-value=0.00019 Score=45.25 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=17.9
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
+|.|++||||||+.+.|+.
T Consensus 7 ~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 7 ALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 9999999999999999875
No 436
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.27 E-value=0.00015 Score=51.02 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=19.8
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+++|+|.+++|||||++.|.+-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999998864
No 437
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.26 E-value=0.00014 Score=51.52 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.8
Q ss_pred eEEEcCCCCCHHHHHHHHhCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl 63 (68)
+.|.||+|+|||||+++|++.
T Consensus 133 lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 133 LFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 389999999999999999863
No 438
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.25 E-value=0.00023 Score=48.27 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=23.9
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
--+++|+++ .|.|++|+|||||+..++
T Consensus 63 gGl~~G~l~---li~G~pG~GKTtl~l~ia 89 (315)
T 3bh0_A 63 YGYKRRNFV---LIAARPSMGKTAFALKQA 89 (315)
T ss_dssp SSBCTTCEE---EEECCTTSSHHHHHHHHH
T ss_pred CCCCCCcEE---EEEeCCCCCHHHHHHHHH
Confidence 348999999 999999999999987665
No 439
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.25 E-value=0.00018 Score=48.39 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.2
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
-+++|+++ .|.|++|+|||||+..++
T Consensus 94 Gl~~g~i~---~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 94 GLESQSVT---EFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp SEETTEEE---EEEESTTSSHHHHHHHHH
T ss_pred CccCCeEE---EEECCCCCCHHHHHHHHH
Confidence 37899999 999999999999997665
No 440
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.24 E-value=0.00021 Score=46.66 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.5
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
++.|.||+|+|||++.+.++.
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 448999999999999999874
No 441
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.24 E-value=0.00022 Score=47.27 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=21.5
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
..+|.++ ++.|++||||||+.+.|+.
T Consensus 24 ~~~~~~i---~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 24 AMNAKFI---VIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp --CCCEE---EEEESTTSCHHHHHHHHHH
T ss_pred CCCCeEE---EEECCCCCCHHHHHHHHHH
Confidence 3468888 9999999999999998753
No 442
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.22 E-value=0.00025 Score=46.16 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=20.8
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+|.++ ++-|++||||||+.+.|+-
T Consensus 2 ~g~~i---~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYI---VIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEE---EEEECTTSCHHHHHHHHHH
T ss_pred CCeEE---EEECCCCCCHHHHHHHHHH
Confidence 46777 9999999999999988753
No 443
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.22 E-value=0.0002 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=20.2
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
|+|+|+|.+++|||||++.+.|-.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 567999999999999999998753
No 444
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.22 E-value=0.00019 Score=49.92 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=20.2
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+++++|+.++|||||++.|.|.
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5699999999999999999884
No 445
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.20 E-value=0.00024 Score=49.94 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=21.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHPV 65 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~~ 65 (68)
++++++|++++|||||++.+.|-..
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~ 200 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEER 200 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 4679999999999999999988653
No 446
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.20 E-value=0.0002 Score=47.04 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=17.3
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
.|.||+|+|||++.+.++.
T Consensus 71 ll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 71 SFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999987764
No 447
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.20 E-value=5.9e-05 Score=57.17 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=26.6
Q ss_pred eEEecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 31 SSSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 31 s~~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++.+.+++.+ .|.||+|+|||||.++|++..
T Consensus 505 ~~~~~~~~~v---LL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 505 KFGMTPSKGV---LFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCCC---CCBCCTTSSHHHHHHHHHHHH
T ss_pred hcCCCCCcee---EEECCCCCCHHHHHHHHHHHh
Confidence 4567788888 999999999999999998653
No 448
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.19 E-value=0.00023 Score=42.86 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=18.4
Q ss_pred EEEcCCCCCHHHHHHHHhCC
Q 035290 44 VALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl 63 (68)
.|.||+|+|||++.+.|+..
T Consensus 28 ll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 28 WLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp EEESSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 89999999999999999754
No 449
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.19 E-value=0.00028 Score=46.19 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=21.9
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
.+|.++ ++.|++||||||+.+.|+-
T Consensus 3 ~~g~~i---~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 3 GRGKLI---LIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCCCEE---EEEECSSSSHHHHHHHHHH
T ss_pred CCCeEE---EEECCCCCCHHHHHHHHHH
Confidence 468888 9999999999999998864
No 450
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.19 E-value=0.00024 Score=45.99 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=17.3
Q ss_pred eEEEcCCCCCHHHHHHHHh
Q 035290 43 VVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~ 61 (68)
+.|+||.||||+|..+.|+
T Consensus 3 Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999998886
No 451
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.18 E-value=0.00019 Score=47.05 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=21.8
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
.+++..++ .|+||.||||+|..+.|+
T Consensus 25 ~~~k~kiI---~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 25 KLAKAKVI---FVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp CTTSCEEE---EEECCTTCCHHHHHHHHH
T ss_pred hccCCcEE---EEECCCCCCHHHHHHHHH
Confidence 45666677 899999999999998886
No 452
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.18 E-value=0.00017 Score=51.82 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.6
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++.++ +++|++|+||||++..|+..
T Consensus 96 ~~~vI---~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFII---MLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEE---EECCCTTSCHHHHHHHHHHH
T ss_pred CCeEE---EEECCCCCCHHHHHHHHHHH
Confidence 46677 99999999999999998854
No 453
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.17 E-value=0.00022 Score=46.45 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=17.6
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
.+.||+|+|||++.+.++.
T Consensus 54 ll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 54 LMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999999874
No 454
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.16 E-value=0.00027 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred eEEEcCCCCCHHHHHHHHhCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
++++|.+++|||||++.|.|-.
T Consensus 123 v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 123 ALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEecCCCchHHHHHHHhcCc
Confidence 4999999999999999998865
No 455
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.16 E-value=0.00031 Score=51.15 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=24.5
Q ss_pred EEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 32 SSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 32 ~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+.+-+|+.. +|+|++|+|||||++.|+.
T Consensus 146 ~pi~kGq~~---~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 146 APYIKGGKI---GLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp SCEETTCEE---EEECCSSSCHHHHHHHHHH
T ss_pred hhhccCCEE---EEECCCCCCccHHHHHHHh
Confidence 356789998 9999999999999998864
No 456
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.14 E-value=0.00028 Score=52.73 Aligned_cols=23 Identities=43% Similarity=0.759 Sum_probs=20.8
Q ss_pred eeEEEcCCCCCHHHHHHHHhCCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+|+++|+.++|||||++.|.|..
T Consensus 71 ~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 71 RLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp EEEEECCTTSCHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35999999999999999999865
No 457
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.13 E-value=0.00021 Score=51.31 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.1
Q ss_pred eEEEcCCCCCHHHHHHHHhCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl 63 (68)
|+|+|++|+|||||++.|.+-
T Consensus 227 V~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 227 VAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 499999999999999998764
No 458
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.12 E-value=0.00027 Score=47.59 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=18.1
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
+.|.||+|+|||+|.+.++.
T Consensus 54 vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 54 ILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 38999999999999999874
No 459
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.12 E-value=0.00023 Score=52.04 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.4
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+.|+++|..|+|||||++.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 456999999999999999999865
No 460
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.11 E-value=0.00027 Score=48.12 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=18.3
Q ss_pred EEEcCCCCCHHHHHHHHhCC
Q 035290 44 VALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl 63 (68)
.|.||+|+|||++.+.|+..
T Consensus 55 ll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 55 LLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999853
No 461
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.10 E-value=0.0003 Score=49.32 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.2
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+..+ +|+||+|||||||...|+..+
T Consensus 40 ~~lI---vI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLL---VLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEE---EEECSTTSSHHHHHHHHHTTS
T ss_pred CceE---EEECCCCCCHHHHHHHHHHHC
Confidence 3466 999999999999999988654
No 462
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.10 E-value=0.00034 Score=50.25 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=20.0
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+|+++|..|+|||||++.+.+-.
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 367999999999999999998754
No 463
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.10 E-value=0.00034 Score=48.02 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=18.0
Q ss_pred eEEEcCCCCCHHHHHHHHhC
Q 035290 43 VVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~G 62 (68)
++|+|+.|+|||||++.|+.
T Consensus 82 I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999999988864
No 464
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.10 E-value=0.00027 Score=47.06 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.4
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
..+..+ .|.||+|+||||+++.++.
T Consensus 42 ~~~~~v---ll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNA---LLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCE---EECBCTTSSHHHHHHHHHH
T ss_pred CCCCcE---EEECCCCCCHHHHHHHHHH
Confidence 344555 8999999999999998864
No 465
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.10 E-value=0.00029 Score=47.99 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.3
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+|+++|++|+|||||++.+.+-
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~ 188 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLG 188 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSS
T ss_pred eEEEECCCCccHHHHHHHHhCC
Confidence 4599999999999999988754
No 466
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.10 E-value=0.00072 Score=46.86 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=23.7
Q ss_pred eeEEecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 30 SSSSSRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 30 vs~~i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
..+.+ .|.-+ .|.|+||+||||+...|..
T Consensus 138 ~~v~~-~g~~v---l~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 138 VLVDV-YGVGV---LITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEE-TTEEE---EEEESTTSSHHHHHHHHHH
T ss_pred EEEEE-CCEEE---EEEeCCCCCHHHHHHHHHh
Confidence 66676 67667 9999999999999877654
No 467
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.09 E-value=0.00033 Score=46.14 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=21.8
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
-.+|.++ ++.|++||||||+.+.|+.
T Consensus 18 ~~~~~~i---~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFI---TFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEE---EEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEE---EEECCCCCCHHHHHHHHHH
Confidence 3567788 9999999999999998863
No 468
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.09 E-value=0.00028 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.5
Q ss_pred eEEEcCCCCCHHHHHHHHhCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl 63 (68)
+.|.||+|+|||++++.++..
T Consensus 58 vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 489999999999999998753
No 469
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.00032 Score=47.59 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.4
Q ss_pred EEEcCCCCCHHHHHHHHhCC
Q 035290 44 VALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl 63 (68)
.|.||.|+|||+|.+.++..
T Consensus 49 LL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 49 LLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEESSSSSCHHHHHHHHHHH
T ss_pred EEECCCCccHHHHHHHHHHH
Confidence 89999999999999999854
No 470
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.07 E-value=0.0002 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.318 Sum_probs=19.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++|+|+|.+++|||||++.|.+-
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEE
T ss_pred CeeeeeCCCCCCHHHHHHHHHcC
Confidence 34599999999999999998764
No 471
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.06 E-value=0.00031 Score=50.61 Aligned_cols=22 Identities=45% Similarity=0.721 Sum_probs=18.1
Q ss_pred eEEEcCCCCCHHHHHHHHhCCC
Q 035290 43 VVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
|+|+|++++|||||++.|.+-.
T Consensus 236 V~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC---
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4999999999999999998864
No 472
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.05 E-value=0.00035 Score=46.74 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=17.3
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
.+.||+|+|||+|.+.|+.
T Consensus 40 Ll~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 40 GIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEECTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 6789999999999999874
No 473
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.04 E-value=0.00042 Score=48.24 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=22.5
Q ss_pred CEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 38 STFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 38 e~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
+...+++++|+.++|||||++.|.|..
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~ 34 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVW 34 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCc
Confidence 334577999999999999999998753
No 474
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.03 E-value=0.00039 Score=47.61 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=18.2
Q ss_pred EEEcCCCCCHHHHHHHHhCC
Q 035290 44 VALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl 63 (68)
.|.||+|+|||+|++.++..
T Consensus 121 Ll~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 121 LLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp EEESSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 89999999999999998753
No 475
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.02 E-value=0.00048 Score=45.02 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.8
Q ss_pred eeeEEEcCC---------CCCHHHHHHHHhC
Q 035290 41 LNVVALGNV---------GAGKSAVLNSLIG 62 (68)
Q Consensus 41 ~~~~liG~s---------GsGKSTLl~~l~G 62 (68)
.+|+++|.+ |+|||||++.+.+
T Consensus 20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp EEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred eEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 356999999 9999999999887
No 476
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.02 E-value=0.00039 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.6
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
+..+ .|.||+|+|||+|+++|+.
T Consensus 152 ~~~l---ll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGL---YLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEE---EEECSTTSSHHHHHHHHHH
T ss_pred CceE---EEECCCCCCHHHHHHHHHH
Confidence 4555 9999999999999998864
No 477
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.02 E-value=0.00058 Score=45.13 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=20.8
Q ss_pred cCCCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 35 RRSSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 35 ~~ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
..|..+ .|+||+|+|||||...|+.
T Consensus 32 ~~g~~i---lI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 32 IYGLGV---LITGDSGVGKSETALELVQ 56 (205)
T ss_dssp ETTEEE---EEECCCTTTTHHHHHHHHT
T ss_pred ECCEEE---EEECCCCCCHHHHHHHHHH
Confidence 356666 9999999999999987764
No 478
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.99 E-value=0.00057 Score=47.59 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.6
Q ss_pred ecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 34 SRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 34 i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
+++|+++ .|.|++|+|||||...++
T Consensus 60 l~~G~ii---~I~G~pGsGKTtLal~la 84 (356)
T 1u94_A 60 LPMGRIV---EIYGPESSGKTTLTLQVI 84 (356)
T ss_dssp EETTSEE---EEECSTTSSHHHHHHHHH
T ss_pred ccCCeEE---EEECCCCCCHHHHHHHHH
Confidence 7899999 999999999999987665
No 479
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.99 E-value=0.00044 Score=48.31 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=17.4
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
+|+||+|||||||...|+-
T Consensus 7 ~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 7 AIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCcCCHHHHHHHHHH
Confidence 8999999999999988874
No 480
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.99 E-value=0.00047 Score=45.29 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.2
Q ss_pred eeEEEcCCCCCHHHHHHHHhC
Q 035290 42 NVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~G 62 (68)
+++++|++|+|||||++.+.+
T Consensus 157 ~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 157 KCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHh
Confidence 569999999999999977753
No 481
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.98 E-value=0.00041 Score=47.32 Aligned_cols=20 Identities=30% Similarity=0.627 Sum_probs=18.2
Q ss_pred EEEcCCCCCHHHHHHHHhCC
Q 035290 44 VALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl 63 (68)
.+.||+|+|||++.+.|+..
T Consensus 76 ll~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 76 LLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 89999999999999998754
No 482
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.97 E-value=0.00035 Score=42.01 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=18.4
Q ss_pred EEEcCCCCCHHHHHHHHhCC
Q 035290 44 VALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl 63 (68)
.|.||+|+|||++.+.|+..
T Consensus 31 ll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 31 FLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEETTCCHHHHHGGGCCT
T ss_pred EEECCCCccHHHHHHHHHHh
Confidence 89999999999999999764
No 483
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.97 E-value=0.00044 Score=48.20 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.4
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
+|+||+|||||||...|+.
T Consensus 14 ~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 14 FLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCccCHHHHHHHHHH
Confidence 8999999999999988873
No 484
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.96 E-value=0.00044 Score=47.45 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=17.7
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
.|.||.|+|||+|.+.++.
T Consensus 88 LL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 88 LLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp EEECSTTSCHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 8999999999999999875
No 485
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.95 E-value=0.00047 Score=49.16 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=23.8
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+..+.. +.+.|.||+|+||||+.+.|+...
T Consensus 44 ~i~~~~~-~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 44 AIEAGHL-HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHTCC-CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHcCCC-cEEEEECCCCCcHHHHHHHHHHHh
Confidence 3555554 334899999999999999998643
No 486
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.94 E-value=0.00056 Score=48.21 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=23.3
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
-+++|+++ .|.|++|+|||||+..++
T Consensus 196 Gl~~G~l~---ii~G~pg~GKT~lal~ia 221 (444)
T 2q6t_A 196 TLGPGSLN---IIAARPAMGKTAFALTIA 221 (444)
T ss_dssp CCCTTCEE---EEEECTTSCHHHHHHHHH
T ss_pred CcCCCcEE---EEEeCCCCCHHHHHHHHH
Confidence 48899999 999999999999987665
No 487
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.94 E-value=0.00043 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.7
Q ss_pred eeeEEEcCCCCCHHHHHHHHhC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~G 62 (68)
.+++++|+.++|||||++.|.+
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHh
Confidence 4679999999999999998875
No 488
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.94 E-value=0.00051 Score=50.05 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=18.9
Q ss_pred eeeEEEcCCCCCHHHHHHHHh
Q 035290 41 LNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~ 61 (68)
++++|+|++++|||||++.|.
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 567999999999999999884
No 489
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.93 E-value=0.00063 Score=45.65 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.2
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
+..+ .|.||+|+|||++.+.++..
T Consensus 70 ~~~v---Ll~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAV---LIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEE---EEEESTTSSHHHHHHHHHHH
T ss_pred CCEE---EEECCCCCCHHHHHHHHHHH
Confidence 3456 89999999999999998743
No 490
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.92 E-value=0.00037 Score=45.95 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=17.4
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
.|.||+|+||||+++.++.
T Consensus 42 ll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 42 LLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp EEECCTTCCCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999998863
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.91 E-value=0.00058 Score=44.00 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.4
Q ss_pred CCEEeeeEEEcCCCCCHHHHHHHHhC
Q 035290 37 SSTFLNVVALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 37 ge~~~~~~liG~sGsGKSTLl~~l~G 62 (68)
|.++ ++=|+.||||||+.+.|+-
T Consensus 2 ~kFI---~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 2 SAFI---TFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp CEEE---EEECCTTSCHHHHHHHHHH
T ss_pred CCEE---EEECCCCCcHHHHHHHHHH
Confidence 4466 8999999999999988764
No 492
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.91 E-value=0.0006 Score=45.38 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=17.2
Q ss_pred eEEEcCCCCCHHHHHHHHh
Q 035290 43 VVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 43 ~~liG~sGsGKSTLl~~l~ 61 (68)
++++|+.||||||+.+.|+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHH
Confidence 3999999999999998885
No 493
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.91 E-value=0.00067 Score=47.28 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.0
Q ss_pred eeeEEEcCCCCCHHHHHHHHhCCC
Q 035290 41 LNVVALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 41 ~~~~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.+++++|+.++|||||++.|.|..
T Consensus 9 ~~I~iiG~~d~GKSTLi~~L~g~~ 32 (408)
T 1s0u_A 9 VNIGMVGHVDHGKTSLTKALTGVW 32 (408)
T ss_dssp EEEEEESCTTSSHHHHHHHHHSCC
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Confidence 367999999999999999998753
No 494
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.89 E-value=0.0005 Score=48.92 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.0
Q ss_pred eeEEEcCCCCCHHHHHHHHhCC
Q 035290 42 NVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++.|+||+|+|||++.+.|+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 3489999999999999998754
No 495
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.89 E-value=0.00059 Score=47.64 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=17.2
Q ss_pred eeEEEcCCCCCHHHHHHHHh
Q 035290 42 NVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 42 ~~~liG~sGsGKSTLl~~l~ 61 (68)
++.|+|.+||||||+++-+.
T Consensus 35 killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 35 KILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 45899999999999988753
No 496
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.87 E-value=0.00085 Score=42.35 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=18.3
Q ss_pred CCCEEeeeEEEcCCCCCHHHHH-HHH
Q 035290 36 RSSTFLNVVALGNVGAGKSAVL-NSL 60 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl-~~l 60 (68)
+|.++ .+.||.|+||||++ +++
T Consensus 2 ~g~i~---vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLT---VITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEE---EEEESTTSSHHHHHHHHH
T ss_pred ccEEE---EEECCCCCCHHHHHHHHH
Confidence 46777 89999999999997 444
No 497
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.87 E-value=0.00081 Score=45.09 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=17.6
Q ss_pred EEEcCCCCCHHHHHHHHhC
Q 035290 44 VALGNVGAGKSAVLNSLIG 62 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~G 62 (68)
.|.||.|+|||||++.++.
T Consensus 49 ll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 49 LFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999998874
No 498
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.86 E-value=0.00064 Score=44.05 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.7
Q ss_pred EEEcCCCCCHHHHHHHHhCCC
Q 035290 44 VALGNVGAGKSAVLNSLIGHP 64 (68)
Q Consensus 44 ~liG~sGsGKSTLl~~l~Gl~ 64 (68)
.|.||+|+|||++.+.|+...
T Consensus 33 ll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 33 LIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp EEECCTTSCHHHHHHHHHHTS
T ss_pred EEECCCCCcHHHHHHHHHHhc
Confidence 899999999999999987543
No 499
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.86 E-value=0.00047 Score=47.88 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.2
Q ss_pred CCCEEeeeEEEcCCCCCHHHHHHHHhCC
Q 035290 36 RSSTFLNVVALGNVGAGKSAVLNSLIGH 63 (68)
Q Consensus 36 ~ge~~~~~~liG~sGsGKSTLl~~l~Gl 63 (68)
++..+ +++|.+|+|||||++.|.+.
T Consensus 161 ~~~~i---~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDV---YVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCE---EEECCTTSSHHHHHHHHHHH
T ss_pred ccCcE---EEEcCCCCchHHHHHHHHhh
Confidence 34455 99999999999999999864
No 500
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.86 E-value=0.00078 Score=46.88 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=23.7
Q ss_pred EecCCCEEeeeEEEcCCCCCHHHHHHHHh
Q 035290 33 SSRRSSTFLNVVALGNVGAGKSAVLNSLI 61 (68)
Q Consensus 33 ~i~~ge~~~~~~liG~sGsGKSTLl~~l~ 61 (68)
-+.+|+.+ .|.|++|+|||||+..++
T Consensus 42 Gl~~G~Li---iIaG~pG~GKTt~al~ia 67 (338)
T 4a1f_A 42 GFNKGSLV---IIGARPSMGKTSLMMNMV 67 (338)
T ss_dssp SBCTTCEE---EEEECTTSCHHHHHHHHH
T ss_pred CCCCCcEE---EEEeCCCCCHHHHHHHHH
Confidence 58999999 999999999999987765
Done!