BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035291
MVCFCFLVDQTRKVHKCKPAAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFC
GAVLKSYQ

High Scoring Gene Products

Symbol, full name Information P value
AT1G52855 protein from Arabidopsis thaliana 1.7e-27
AT3G15534 protein from Arabidopsis thaliana 1.8e-25
AT2G20835 protein from Arabidopsis thaliana 5.3e-24
AT5G10695 protein from Arabidopsis thaliana 1.4e-07
AT4G29905 protein from Arabidopsis thaliana 0.00045
AT5G57123 protein from Arabidopsis thaliana 0.00057

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035291
        (68 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1006230684 - symbol:AT1G52855 "AT1G52855" spec...   308  1.7e-27   1
TAIR|locus:4515103075 - symbol:AT3G15534 "AT3G15534" spec...   289  1.8e-25   1
TAIR|locus:2827497 - symbol:AT2G20835 "AT2G20835" species...   275  5.3e-24   1
TAIR|locus:505006594 - symbol:AT5G10695 species:3702 "Ara...   120  1.4e-07   1
TAIR|locus:504955497 - symbol:AT4G29905 "AT4G29905" speci...    87  0.00045   1
TAIR|locus:504954859 - symbol:AT5G57123 "AT5G57123" speci...    86  0.00057   1


>TAIR|locus:1006230684 [details] [associations]
            symbol:AT1G52855 "AT1G52855" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002684
            GenomeReviews:CT485782_GR HOGENOM:HOG000242377
            ProtClustDB:CLSN2683555 EMBL:AY086808 EMBL:BT025632 IPI:IPI00533597
            RefSeq:NP_974011.1 UniGene:At.49491 EnsemblPlants:AT1G52855.1
            GeneID:2745824 KEGG:ath:AT1G52855 TAIR:At1g52855 eggNOG:NOG279284
            InParanoid:Q8LC41 OMA:HRATWRA PhylomeDB:Q8LC41
            Genevestigator:Q8LC41 Uniprot:Q8LC41
        Length = 68

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 51/68 (75%), Positives = 61/68 (89%)

Query:     1 MVCFCFLVDQTRKVHKCKPAAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFC 60
             MVCFCFLVDQTRKV + KPAAG CSRCG  AS+ADMKT+TRFC +P YW+SWRA++C+FC
Sbjct:     1 MVCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSWRAVVCSFC 60

Query:    61 GAVLKSYQ 68
             G+VLKSY+
Sbjct:    61 GSVLKSYR 68


>TAIR|locus:4515103075 [details] [associations]
            symbol:AT3G15534 "AT3G15534" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AC024081 IPI:IPI00892139
            RefSeq:NP_001118636.1 UniGene:At.73309 EnsemblPlants:AT3G15534.1
            GeneID:6240914 KEGG:ath:AT3G15534 TAIR:At3g15534 eggNOG:NOG290372
            HOGENOM:HOG000242377 OMA:CRSWRAI PhylomeDB:B3H6H2
            ProtClustDB:CLSN2683555 Genevestigator:B3H6H2 Uniprot:B3H6H2
        Length = 68

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 51/68 (75%), Positives = 58/68 (85%)

Query:     1 MVCFCFLVDQTRKVHKCKPAAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFC 60
             MVCFCFLVDQ RKV   KPAAG CSRCG GA VADMKT+TRFC +P Y +SWRAI+C+FC
Sbjct:     1 MVCFCFLVDQKRKVKGSKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFC 60

Query:    61 GAVLKSYQ 68
             G+VLKSY+
Sbjct:    61 GSVLKSYR 68


>TAIR|locus:2827497 [details] [associations]
            symbol:AT2G20835 "AT2G20835" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC006234 HOGENOM:HOG000242377
            ProtClustDB:CLSN2683555 EMBL:AY219053 EMBL:BT026016 EMBL:AK117756
            IPI:IPI00519320 RefSeq:NP_179679.1 UniGene:At.39640
            EnsemblPlants:AT2G20835.1 GeneID:816616 KEGG:ath:AT2G20835
            TAIR:At2g20835 eggNOG:NOG285797 InParanoid:Q8S8I3 OMA:WKAIVCH
            PhylomeDB:Q8S8I3 Genevestigator:Q8S8I3 Uniprot:Q8S8I3
        Length = 68

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 49/67 (73%), Positives = 56/67 (83%)

Query:     1 MVCFCFLVDQTRKVHKCKPAAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFC 60
             M  FCFLVDQ +KV   KPAAG+CSRCGGGA VADM+T+TRFC VPFY K+W+AI+C  C
Sbjct:     1 MAIFCFLVDQRKKVRGRKPAAGLCSRCGGGAVVADMRTSTRFCGVPFYRKAWKAIVCHIC 60

Query:    61 GAVLKSY 67
             GAVLKSY
Sbjct:    61 GAVLKSY 67


>TAIR|locus:505006594 [details] [associations]
            symbol:AT5G10695 species:3702 "Arabidopsis thaliana"
            [GO:0005576 "extracellular region" evidence=ISM] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0006612 "protein targeting to membrane"
            evidence=RCA] [GO:0006944 "cellular membrane fusion" evidence=RCA]
            [GO:0010286 "heat acclimation" evidence=RCA] [GO:0010363
            "regulation of plant-type hypersensitive response" evidence=RCA]
            [GO:0030968 "endoplasmic reticulum unfolded protein response"
            evidence=RCA] [GO:0043069 "negative regulation of programmed cell
            death" evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR
            HOGENOM:HOG000241008 EMBL:AY080612 EMBL:BT000913 IPI:IPI00535659
            RefSeq:NP_568234.1 UniGene:At.19727 UniGene:At.32341 STRING:Q8RXY3
            EnsemblPlants:AT5G10695.1 GeneID:830934 KEGG:ath:AT5G10695
            TAIR:At5g10695 eggNOG:NOG255285 InParanoid:Q8RXY3 OMA:PGACPYC
            PhylomeDB:Q8RXY3 ProtClustDB:CLSN2917603 ArrayExpress:Q8RXY3
            Genevestigator:Q8RXY3 Uniprot:Q8RXY3
        Length = 67

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query:     2 VCFCFLVDQTRKVHKCKPAAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCG 61
             +C  F+ DQ  +V     A G C  CGG   V D+ +  RFC VP   KS R  +C+ CG
Sbjct:     1 MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60


>TAIR|locus:504955497 [details] [associations]
            symbol:AT4G29905 "AT4G29905" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND]
            EMBL:CP002687 GenomeReviews:CT486007_GR HOGENOM:HOG000241008
            EMBL:AY054609 EMBL:AY072499 IPI:IPI00525360 RefSeq:NP_680750.1
            UniGene:At.25207 UniGene:At.67713 PRIDE:Q940I1 DNASU:829113
            EnsemblPlants:AT4G29905.1 GeneID:829113 KEGG:ath:AT4G29905
            TAIR:At4g29905 eggNOG:NOG265683 InParanoid:Q940I1 OMA:EKTELGR
            PhylomeDB:Q940I1 ProtClustDB:CLSN2915057 Genevestigator:Q940I1
            Uniprot:Q940I1
        Length = 67

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 18/48 (37%), Positives = 24/48 (50%)

Query:    20 AAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLKSY 67
             A G+C  CGG  S  D++T   FC +P  +K  R   C+ C   L  Y
Sbjct:    19 APGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCERHLVLY 66


>TAIR|locus:504954859 [details] [associations]
            symbol:AT5G57123 "AT5G57123" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AY086692
            EMBL:BT025302 EMBL:AK229893 IPI:IPI00525942 RefSeq:NP_680449.1
            UniGene:At.64306 EnsemblPlants:AT5G57123.1 GeneID:835817
            KEGG:ath:AT5G57123 TAIR:At5g57123 eggNOG:NOG243890
            HOGENOM:HOG000241008 InParanoid:Q8LCB5 OMA:FRIRRRF PhylomeDB:Q8LCB5
            ProtClustDB:CLSN2917878 Genevestigator:Q8LCB5 Uniprot:Q8LCB5
        Length = 67

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 21/67 (31%), Positives = 29/67 (43%)

Query:     1 MVCFCFLVDQTRKVHKCKPAAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFC 60
             +VC C   D+       + A G C  CGG   + D++    FC VP  +K  R   C+ C
Sbjct:     3 LVCLC---DEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSC 59

Query:    61 GAVLKSY 67
                L  Y
Sbjct:    60 DRRLVLY 66


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.334   0.139   0.520    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       68        68   0.00091  102 3  11 21  0.49    27
                                                     29  0.38    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  122 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.92u 0.12s 9.04t   Elapsed:  00:00:01
  Total cpu time:  8.92u 0.12s 9.04t   Elapsed:  00:00:01
  Start:  Fri May 10 07:11:58 2013   End:  Fri May 10 07:11:59 2013

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