Query 035291
Match_columns 68
No_of_seqs 60 out of 62
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 17:41:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o9x_A Uncharacterized HTH-typ 89.3 0.73 2.5E-05 28.0 4.7 43 23-65 4-47 (133)
2 2k4x_A 30S ribosomal protein S 88.8 0.19 6.5E-06 28.5 1.6 29 21-64 18-46 (55)
3 3j20_Y 30S ribosomal protein S 87.0 0.37 1.3E-05 26.8 2.0 29 20-63 18-46 (50)
4 2fiy_A Protein FDHE homolog; F 86.1 0.31 1.1E-05 35.6 1.8 44 19-62 180-230 (309)
5 3ga8_A HTH-type transcriptiona 80.1 3.7 0.00013 23.6 4.6 41 23-65 4-47 (78)
6 1vq8_Z 50S ribosomal protein L 73.5 1.4 4.7E-05 26.9 1.4 26 12-38 18-43 (83)
7 1pft_A TFIIB, PFTFIIBN; N-term 73.1 1.7 5.7E-05 23.2 1.5 28 22-64 6-34 (50)
8 1twf_I B12.6, DNA-directed RNA 71.7 4.2 0.00014 25.6 3.4 30 22-64 5-36 (122)
9 1qyp_A RNA polymerase II; tran 71.4 6.1 0.00021 21.5 3.7 40 21-65 15-54 (57)
10 1k3x_A Endonuclease VIII; hydr 71.3 2.3 8E-05 29.8 2.4 21 14-36 229-249 (262)
11 3h0g_I DNA-directed RNA polyme 71.2 2 6.8E-05 26.8 1.8 9 23-31 6-14 (113)
12 1wii_A Hypothetical UPF0222 pr 69.8 6.2 0.00021 24.1 3.8 37 20-66 22-59 (85)
13 2jr6_A UPF0434 protein NMA0874 63.6 3.6 0.00012 24.0 1.7 28 23-65 10-37 (68)
14 2js4_A UPF0434 protein BB2007; 62.5 5.9 0.0002 23.2 2.5 29 22-65 9-37 (70)
15 2kvh_A Zinc finger and BTB dom 61.8 2.8 9.5E-05 17.7 0.8 13 53-65 2-14 (27)
16 2hf1_A Tetraacyldisaccharide-1 61.0 6 0.0002 23.1 2.4 28 23-65 10-37 (68)
17 1a7i_A QCRP2 (LIM1); LIM domai 61.0 2.4 8.2E-05 23.8 0.6 42 19-66 5-46 (81)
18 3u5c_f 40S ribosomal protein S 60.0 8.2 0.00028 25.1 3.1 41 7-65 107-149 (152)
19 2cu8_A Cysteine-rich protein 2 59.5 2.3 7.8E-05 23.6 0.3 42 18-65 6-47 (76)
20 3a43_A HYPD, hydrogenase nicke 58.4 2.9 9.9E-05 26.9 0.7 11 21-31 107-117 (139)
21 2d8y_A Eplin protein; LIM doma 58.1 1.8 6.1E-05 25.0 -0.3 41 20-66 14-54 (91)
22 2xzf_A Formamidopyrimidine-DNA 58.0 7.4 0.00025 27.3 2.8 34 14-62 237-270 (271)
23 1rik_A E6APC1 peptide; E6-bind 57.9 3.8 0.00013 17.2 0.9 12 54-65 2-13 (29)
24 2pk7_A Uncharacterized protein 56.4 5.2 0.00018 23.4 1.5 28 23-65 10-37 (69)
25 1qxf_A GR2, 30S ribosomal prot 56.3 7.9 0.00027 23.0 2.3 30 22-65 8-37 (66)
26 1srk_A Zinc finger protein ZFP 56.1 3.7 0.00013 18.3 0.7 14 52-65 5-18 (35)
27 2m0f_A Zinc finger and BTB dom 56.1 3.9 0.00013 17.0 0.8 12 54-65 2-13 (29)
28 3f6q_B LIM and senescent cell 56.1 3.1 0.00011 22.3 0.5 40 19-65 9-50 (72)
29 4esj_A Type-2 restriction enzy 55.4 5.7 0.00019 29.1 1.9 35 21-66 34-68 (257)
30 2m0d_A Zinc finger and BTB dom 55.3 4.1 0.00014 17.0 0.7 12 54-65 3-14 (30)
31 2lvu_A Zinc finger and BTB dom 60.2 2.5 8.6E-05 17.7 0.0 12 54-65 2-13 (26)
32 1gh9_A 8.3 kDa protein (gene M 55.2 4.9 0.00017 23.8 1.3 17 23-41 6-22 (71)
33 2kvf_A Zinc finger and BTB dom 55.2 4.1 0.00014 17.1 0.7 12 54-65 3-14 (28)
34 2jny_A Uncharacterized BCR; st 54.0 9.2 0.00031 22.3 2.4 29 22-65 11-39 (67)
35 1tfi_A Transcriptional elongat 53.2 7.7 0.00026 21.2 1.8 17 15-31 3-19 (50)
36 2dkt_A Ring finger and CHY zin 52.7 5.4 0.00019 26.6 1.3 37 18-61 68-105 (143)
37 2elx_A Zinc finger protein 406 51.9 4.6 0.00016 17.8 0.7 14 52-65 5-18 (35)
38 3m7n_A Putative uncharacterize 49.6 8.2 0.00028 25.4 1.8 28 19-63 138-165 (179)
39 2con_A RUH-035 protein, NIN on 48.9 5.5 0.00019 24.1 0.8 11 21-31 30-40 (79)
40 2elm_A Zinc finger protein 406 48.8 9.1 0.00031 17.5 1.5 14 52-65 7-20 (37)
41 3qt1_I DNA-directed RNA polyme 47.9 4.6 0.00016 26.2 0.4 10 22-31 25-34 (133)
42 2elq_A Zinc finger protein 406 46.4 6.7 0.00023 17.6 0.8 14 52-65 7-20 (36)
43 2kvg_A Zinc finger and BTB dom 45.9 5.9 0.0002 16.8 0.5 11 54-64 3-13 (27)
44 2lcq_A Putative toxin VAPC6; P 45.9 13 0.00045 23.6 2.4 11 22-32 149-159 (165)
45 2ct7_A Ring finger protein 31; 45.8 7.7 0.00026 22.7 1.1 9 24-32 28-36 (86)
46 2kwq_A Protein MCM10 homolog; 45.3 17 0.0006 22.5 2.7 27 5-31 48-75 (92)
47 1g47_A Pinch protein; LIM doma 45.0 3.3 0.00011 22.7 -0.6 44 15-65 5-50 (77)
48 1x4k_A Skeletal muscle LIM-pro 44.9 4.2 0.00014 22.0 -0.1 37 22-65 6-44 (72)
49 2lvr_A Zinc finger and BTB dom 50.7 4.6 0.00016 17.0 0.0 12 54-65 3-14 (30)
50 1iml_A CRIP, cysteine rich int 43.9 4.9 0.00017 22.2 0.0 10 23-32 2-11 (76)
51 2lvt_A Zinc finger and BTB dom 49.8 4.8 0.00017 17.0 0.0 11 54-64 2-12 (29)
52 2elv_A Zinc finger protein 406 43.8 8.5 0.00029 17.2 0.9 14 52-65 7-20 (36)
53 2iyb_E Testin, TESS, TES; LIM 43.5 6.5 0.00022 21.2 0.5 11 22-32 3-13 (65)
54 3j20_W 30S ribosomal protein S 42.9 17 0.00057 21.4 2.3 32 21-66 15-46 (63)
55 2elt_A Zinc finger protein 406 42.7 7.8 0.00027 17.2 0.7 14 52-65 7-20 (36)
56 2elp_A Zinc finger protein 406 42.4 9 0.00031 17.2 0.9 14 52-65 7-20 (37)
57 1ard_A Yeast transcription fac 42.0 3.5 0.00012 17.3 -0.6 10 55-64 3-12 (29)
58 2epc_A Zinc finger protein 32; 41.8 8.8 0.0003 17.7 0.8 14 52-65 9-22 (42)
59 2xjy_A Rhombotin-2; oncoprotei 41.7 7.5 0.00026 23.3 0.6 37 22-65 67-105 (131)
60 1nui_A DNA primase/helicase; z 41.1 7.2 0.00025 26.3 0.5 34 16-63 9-42 (255)
61 3mhs_C SAGA-associated factor 41.1 8.9 0.0003 24.4 0.9 18 17-34 66-83 (99)
62 2dj7_A Actin-binding LIM prote 41.0 6.5 0.00022 22.3 0.2 39 21-65 15-53 (80)
63 4ayb_P DNA-directed RNA polyme 40.8 8.2 0.00028 21.8 0.6 10 22-31 24-33 (48)
64 2egq_A FHL1 protein; LIM domai 40.6 11 0.00038 20.5 1.2 38 21-65 15-57 (77)
65 2el5_A Zinc finger protein 268 40.5 8.8 0.0003 17.7 0.7 14 52-65 8-21 (42)
66 1njq_A Superman protein; zinc- 40.2 8.1 0.00028 17.7 0.5 13 53-65 5-17 (39)
67 1k82_A Formamidopyrimidine-DNA 39.7 14 0.00049 25.8 1.9 14 23-36 242-255 (268)
68 2kpi_A Uncharacterized protein 39.7 20 0.00068 19.9 2.2 26 23-65 12-39 (56)
69 3u6p_A Formamidopyrimidine-DNA 39.5 15 0.0005 25.9 1.9 15 22-36 246-260 (273)
70 1ee8_A MUTM (FPG) protein; bet 39.0 15 0.00051 25.8 1.9 14 23-36 237-250 (266)
71 2kdx_A HYPA, hydrogenase/ureas 39.0 16 0.00054 22.4 1.8 14 17-30 69-82 (119)
72 2yu5_A Zinc finger protein 473 38.8 9.7 0.00033 17.8 0.7 14 52-65 10-23 (44)
73 2els_A Zinc finger protein 406 38.6 11 0.00039 16.7 0.9 13 52-64 7-19 (36)
74 2bl6_A Nucleocapsid protein P1 38.6 4 0.00014 20.5 -0.8 26 5-30 3-28 (37)
75 2qkd_A Zinc finger protein ZPR 38.2 37 0.0013 25.8 4.1 41 19-64 10-51 (404)
76 2epv_A Zinc finger protein 268 38.1 10 0.00034 17.9 0.7 14 52-65 10-23 (44)
77 2emb_A Zinc finger protein 473 38.0 9.5 0.00033 17.9 0.6 14 52-65 10-23 (44)
78 2em7_A Zinc finger protein 224 37.8 11 0.00036 17.9 0.7 14 52-65 10-23 (46)
79 3h0g_L DNA-directed RNA polyme 37.7 14 0.00047 21.5 1.3 13 19-31 19-31 (63)
80 2enc_A Zinc finger protein 224 37.2 11 0.00036 17.9 0.7 14 52-65 10-23 (46)
81 2ytf_A Zinc finger protein 268 37.2 11 0.00036 17.8 0.7 14 52-65 10-23 (46)
82 2eof_A Zinc finger protein 268 37.2 10 0.00035 17.6 0.6 14 52-65 10-23 (44)
83 2emi_A Zinc finger protein 484 37.0 12 0.00039 17.7 0.8 14 52-65 10-23 (46)
84 2jvx_A NF-kappa-B essential mo 36.9 13 0.00043 18.6 0.9 12 54-65 3-14 (28)
85 2eml_A Zinc finger protein 28 36.7 11 0.00037 17.8 0.7 14 52-65 10-23 (46)
86 2epw_A Zinc finger protein 268 36.5 11 0.00037 17.8 0.7 14 52-65 10-23 (46)
87 2eow_A Zinc finger protein 347 36.5 11 0.00038 17.7 0.7 14 52-65 10-23 (46)
88 2eoo_A ZFP-95, zinc finger pro 36.5 12 0.0004 17.8 0.8 14 52-65 10-23 (46)
89 1dxg_A Desulforedoxin; non-hem 36.3 23 0.00078 17.9 1.9 13 22-34 7-19 (36)
90 2eoy_A Zinc finger protein 473 36.3 12 0.00041 17.7 0.8 14 52-65 10-23 (46)
91 2yts_A Zinc finger protein 484 36.3 11 0.00038 17.7 0.7 14 52-65 10-23 (46)
92 2xzm_9 RPS31E; ribosome, trans 36.1 35 0.0012 23.2 3.4 23 6-31 101-123 (189)
93 2ytj_A Zinc finger protein 484 35.9 11 0.00039 17.7 0.7 14 52-65 10-23 (46)
94 2eme_A Zinc finger protein 473 35.8 11 0.00039 17.7 0.7 14 52-65 10-23 (46)
95 2yrj_A Zinc finger protein 473 35.8 12 0.00042 17.6 0.8 14 52-65 10-23 (46)
96 1klr_A Zinc finger Y-chromosom 35.7 5.3 0.00018 16.6 -0.6 10 55-64 3-12 (30)
97 3w0f_A Endonuclease 8-like 3; 35.7 11 0.00037 27.4 0.7 20 13-36 247-266 (287)
98 2emx_A Zinc finger protein 268 35.7 13 0.00043 17.4 0.8 14 52-65 8-21 (44)
99 2em5_A ZFP-95, zinc finger pro 35.5 12 0.0004 17.8 0.7 14 52-65 10-23 (46)
100 2co8_A NEDD9 interacting prote 35.5 2.4 8.4E-05 24.1 -2.2 14 19-32 13-26 (82)
101 2eor_A Zinc finger protein 224 35.3 11 0.00037 17.8 0.5 14 52-65 10-23 (46)
102 2emp_A Zinc finger protein 347 35.2 12 0.00042 17.6 0.7 14 52-65 10-23 (46)
103 2emy_A Zinc finger protein 268 35.2 13 0.00044 17.6 0.8 14 52-65 10-23 (46)
104 2eq0_A Zinc finger protein 347 35.1 12 0.0004 17.7 0.7 14 52-65 10-23 (46)
105 2m0e_A Zinc finger and BTB dom 35.0 6 0.00021 16.3 -0.4 10 55-64 3-12 (29)
106 2ytp_A Zinc finger protein 484 35.0 13 0.00044 17.6 0.8 14 52-65 10-23 (46)
107 2emj_A Zinc finger protein 28 35.0 12 0.00041 17.7 0.7 14 52-65 10-23 (46)
108 2yto_A Zinc finger protein 484 35.0 13 0.00044 17.6 0.8 14 52-65 10-23 (46)
109 2xzm_6 RPS27E; ribosome, trans 34.8 24 0.00081 21.6 2.1 31 22-66 33-63 (81)
110 2em8_A Zinc finger protein 224 34.8 12 0.0004 17.8 0.6 14 52-65 10-23 (46)
111 2em2_A Zinc finger protein 28 34.8 12 0.00041 17.7 0.7 14 52-65 10-23 (46)
112 2ep3_A Zinc finger protein 484 34.6 12 0.00042 17.6 0.7 14 52-65 10-23 (46)
113 2eox_A Zinc finger protein 473 34.6 12 0.00042 17.5 0.7 14 52-65 10-23 (44)
114 2emm_A ZFP-95, zinc finger pro 34.5 12 0.00043 17.5 0.7 14 52-65 10-23 (46)
115 2ytg_A ZFP-95, zinc finger pro 34.3 11 0.00038 17.8 0.5 14 52-65 10-23 (46)
116 2a20_A Regulating synaptic mem 34.3 6.8 0.00023 23.2 -0.4 25 23-62 35-59 (62)
117 2en2_A B-cell lymphoma 6 prote 34.3 12 0.0004 17.3 0.5 14 52-65 9-22 (42)
118 3iuf_A Zinc finger protein UBI 34.3 14 0.00047 18.2 0.8 14 52-65 5-18 (48)
119 2el4_A Zinc finger protein 268 34.2 13 0.00043 17.5 0.7 14 52-65 10-23 (46)
120 2el6_A Zinc finger protein 268 34.2 13 0.00043 17.6 0.7 14 52-65 10-23 (46)
121 2ep2_A Zinc finger protein 484 34.1 13 0.00043 17.6 0.7 14 52-65 10-23 (46)
122 3pwf_A Rubrerythrin; non heme 34.1 31 0.001 22.7 2.7 12 20-31 137-148 (170)
123 2elo_A Zinc finger protein 406 34.1 9.1 0.00031 17.1 0.1 14 52-65 7-20 (37)
124 2ene_A Zinc finger protein 347 34.1 12 0.00042 17.6 0.6 14 52-65 10-23 (46)
125 2emf_A Zinc finger protein 484 33.8 15 0.0005 17.4 0.9 14 52-65 10-23 (46)
126 2eoz_A Zinc finger protein 473 33.8 12 0.00041 17.8 0.5 14 52-65 10-23 (46)
127 3mjh_B Early endosome antigen 33.8 14 0.00047 19.1 0.8 16 52-67 3-18 (34)
128 1l8d_A DNA double-strand break 33.7 19 0.00064 21.4 1.5 13 20-32 46-58 (112)
129 2emh_A Zinc finger protein 484 33.5 12 0.00042 17.6 0.5 14 52-65 10-23 (46)
130 3lcz_A YCZA, inhibitor of trap 33.3 8.6 0.00029 21.3 -0.1 18 14-31 2-19 (53)
131 2em4_A Zinc finger protein 28 33.3 13 0.00044 17.6 0.6 14 52-65 10-23 (46)
132 2ept_A Zinc finger protein 32; 33.3 14 0.00049 16.9 0.8 14 52-65 8-21 (41)
133 2en3_A ZFP-95, zinc finger pro 33.2 13 0.00046 17.5 0.7 14 52-65 10-23 (46)
134 2em9_A Zinc finger protein 224 33.2 13 0.00046 17.4 0.7 14 52-65 10-23 (46)
135 1v6g_A Actin binding LIM prote 33.0 10 0.00036 21.0 0.3 12 23-34 17-28 (81)
136 2apo_B Ribosome biogenesis pro 32.8 14 0.00049 21.3 0.8 12 20-31 17-28 (60)
137 2epu_A Zinc finger protein 32; 32.7 13 0.00044 17.5 0.5 14 52-65 10-23 (45)
138 2yso_A ZFP-95, zinc finger pro 32.7 14 0.00047 17.4 0.7 14 52-65 10-23 (46)
139 2jvm_A Uncharacterized protein 32.6 16 0.00054 22.3 1.0 13 19-31 51-63 (80)
140 1dl6_A Transcription factor II 32.6 11 0.00036 21.1 0.2 30 22-65 12-41 (58)
141 2yu8_A Zinc finger protein 347 32.5 14 0.00046 17.5 0.6 14 52-65 10-23 (46)
142 2dlo_A Thyroid receptor-intera 32.5 16 0.00056 20.2 1.0 39 20-65 14-52 (81)
143 2em3_A Zinc finger protein 28 32.4 14 0.00048 17.4 0.7 14 52-65 10-23 (46)
144 2ema_A Zinc finger protein 347 32.4 15 0.00052 17.3 0.8 14 52-65 10-23 (46)
145 2ysp_A Zinc finger protein 224 32.4 14 0.00047 17.5 0.6 14 52-65 10-23 (46)
146 2jrr_A Uncharacterized protein 32.3 15 0.00052 21.6 0.9 13 19-31 38-50 (67)
147 1j2o_A FLIN2, fusion of rhombo 32.1 11 0.00038 22.5 0.3 37 21-65 3-41 (114)
148 2drp_A Protein (tramtrack DNA- 31.9 18 0.00063 18.2 1.1 12 53-64 39-50 (66)
149 2elr_A Zinc finger protein 406 31.9 5.8 0.0002 17.6 -0.8 13 52-64 7-19 (36)
150 2epr_A POZ-, at HOOK-, and zin 31.9 14 0.00046 17.8 0.6 15 51-65 9-23 (48)
151 2xqn_T Testin, TESS; metal-bin 31.8 12 0.0004 22.4 0.3 11 22-32 4-14 (126)
152 2en6_A Zinc finger protein 268 31.6 15 0.0005 17.3 0.7 14 52-65 10-23 (46)
153 2ytd_A Zinc finger protein 473 31.6 15 0.0005 17.3 0.7 14 52-65 10-23 (46)
154 2riq_A Poly [ADP-ribose] polym 31.5 15 0.00051 24.7 0.9 13 19-31 76-88 (160)
155 2en1_A Zinc finger protein 224 31.2 14 0.00048 17.4 0.5 14 52-65 10-23 (46)
156 2ytk_A Zinc finger protein 347 31.0 15 0.00052 17.3 0.7 14 52-65 10-23 (46)
157 2en8_A Zinc finger protein 224 31.0 14 0.00047 17.4 0.5 14 52-65 10-23 (46)
158 1rut_X Flinc4, fusion protein 30.5 12 0.0004 24.3 0.2 37 22-65 70-108 (188)
159 1x3h_A Leupaxin; paxillin fami 30.4 12 0.0004 20.6 0.2 37 22-65 16-52 (80)
160 2cor_A Pinch protein; LIM doma 30.3 7.9 0.00027 21.7 -0.6 42 15-65 9-52 (79)
161 2eoj_A Zinc finger protein 268 30.0 9.4 0.00032 17.8 -0.3 14 52-65 10-23 (44)
162 1znf_A 31ST zinc finger from X 29.9 8.2 0.00028 15.8 -0.4 10 55-64 2-11 (27)
163 1paa_A Yeast transcription fac 29.7 6.3 0.00021 16.6 -0.9 9 55-63 3-11 (30)
164 2ab3_A ZNF29; zinc finger prot 29.7 19 0.00065 14.7 0.8 12 54-65 2-15 (29)
165 1x61_A Thyroid receptor intera 29.7 6.7 0.00023 21.2 -0.9 13 21-33 5-17 (72)
166 2cup_A Skeletal muscle LIM-pro 29.6 14 0.00049 21.1 0.5 12 21-32 5-16 (101)
167 3cng_A Nudix hydrolase; struct 29.6 27 0.00092 21.9 1.8 9 23-31 5-13 (189)
168 2d8x_A Protein pinch; LIM doma 29.5 14 0.00048 19.8 0.4 37 22-65 6-42 (70)
169 2ep0_A Zinc finger protein 28 29.4 17 0.00058 17.1 0.7 14 52-65 10-23 (46)
170 2rgt_A Fusion of LIM/homeobox 29.3 7.2 0.00024 24.8 -1.0 18 16-33 1-18 (169)
171 2x5c_A Hypothetical protein OR 28.8 37 0.0013 22.1 2.4 18 21-38 52-69 (131)
172 1wyh_A SLIM 2, skeletal muscle 28.8 7.1 0.00024 21.0 -0.9 13 21-33 5-17 (72)
173 2l4z_A DNA endonuclease RBBP8, 28.4 14 0.00047 22.8 0.3 38 21-65 61-99 (123)
174 1x63_A Skeletal muscle LIM-pro 28.3 12 0.00042 20.6 0.0 38 21-65 15-54 (82)
175 1yui_A GAGA-factor; complex (D 28.1 18 0.00062 17.9 0.7 14 52-65 22-35 (54)
176 3p8b_A DNA-directed RNA polyme 27.4 18 0.00063 22.1 0.7 8 23-30 37-44 (81)
177 1ryq_A DNA-directed RNA polyme 27.3 20 0.00067 21.3 0.8 10 21-30 23-32 (69)
178 2eos_A B-cell lymphoma 6 prote 27.3 9.9 0.00034 17.6 -0.5 12 53-64 10-21 (42)
179 2ctu_A Zinc finger protein 483 27.2 29 0.001 17.4 1.4 14 52-65 16-29 (73)
180 1x68_A FHL5 protein; four-and- 27.0 24 0.00082 19.2 1.1 12 21-32 5-16 (76)
181 2jrp_A Putative cytoplasmic pr 26.9 30 0.001 21.0 1.6 9 23-31 33-41 (81)
182 3lpe_B DNA-directed RNA polyme 26.9 20 0.0007 20.4 0.8 7 23-29 15-21 (59)
183 2eod_A TNF receptor-associated 26.8 31 0.0011 17.6 1.5 11 53-63 9-19 (66)
184 3uk3_C Zinc finger protein 217 26.7 22 0.00074 17.3 0.8 14 52-65 30-43 (57)
185 1zfo_A LAsp-1; LIM domain, zin 26.6 23 0.00079 17.1 0.9 14 21-34 3-16 (31)
186 1rim_A E6APC2 peptide; E6-bind 26.3 11 0.00036 16.9 -0.4 11 54-64 2-12 (33)
187 2k9h_A Glycoprotein; hantaviru 26.1 15 0.0005 21.4 0.1 14 20-33 27-40 (57)
188 1vk6_A NADH pyrophosphatase; 1 25.9 40 0.0014 23.3 2.3 10 22-31 108-117 (269)
189 4ddu_A Reverse gyrase; topoiso 25.9 21 0.0007 29.6 0.9 11 22-32 9-19 (1104)
190 1p7a_A BF3, BKLF, kruppel-like 25.7 9.1 0.00031 17.1 -0.8 10 54-63 11-20 (37)
191 2yte_A Zinc finger protein 473 25.6 9.2 0.00031 17.6 -0.8 12 53-64 9-20 (42)
192 2jtn_A LIM domain-binding prot 25.5 22 0.00074 22.7 0.8 17 18-34 57-73 (182)
193 1x62_A C-terminal LIM domain p 25.3 11 0.00039 20.8 -0.5 41 18-65 12-52 (79)
194 1m3v_A FLIN4, fusion of the LI 25.1 10 0.00036 22.9 -0.8 14 21-34 5-18 (122)
195 2enf_A Zinc finger protein 347 25.1 10 0.00035 17.9 -0.7 13 52-64 10-22 (46)
196 1x64_A Alpha-actinin-2 associa 25.0 15 0.0005 20.8 -0.1 39 20-65 24-62 (89)
197 2lt7_A Transcriptional regulat 24.8 31 0.0011 20.9 1.4 15 51-65 19-33 (133)
198 2ely_A Zinc finger protein 224 24.7 11 0.00037 17.9 -0.6 13 52-64 10-22 (46)
199 2eov_A Zinc finger protein 484 24.5 11 0.00037 17.8 -0.6 12 53-64 11-22 (46)
200 2eon_A ZFP-95, zinc finger pro 24.2 11 0.00037 18.0 -0.6 13 52-64 10-22 (46)
201 1f2i_G Fusion of N-terminal 17 24.1 25 0.00084 18.1 0.7 14 52-65 47-60 (73)
202 2d8z_A Four and A half LIM dom 24.0 29 0.00098 18.4 1.0 38 21-65 5-42 (70)
203 1bbo_A Human enhancer-binding 23.9 26 0.00089 17.0 0.8 14 52-65 27-40 (57)
204 3r8s_0 50S ribosomal protein L 23.7 32 0.0011 19.2 1.2 13 19-31 25-37 (56)
205 2eq3_A Zinc finger protein 347 23.5 13 0.00043 17.5 -0.5 13 52-64 10-22 (46)
206 2ds5_A CLPX, ATP-dependent CLP 23.3 20 0.00068 19.9 0.3 9 55-63 12-20 (51)
207 2ct1_A Transcriptional repress 23.2 24 0.00083 18.4 0.6 13 53-65 14-26 (77)
208 2l7x_A Envelope glycoprotein; 23.1 26 0.00089 21.4 0.8 11 22-32 31-41 (77)
209 2ytb_A Zinc finger protein 32; 22.7 12 0.0004 17.2 -0.7 12 53-64 10-21 (42)
210 2epq_A POZ-, at HOOK-, and zin 22.4 14 0.00049 17.4 -0.4 14 52-65 8-21 (45)
211 3u5c_b RP61, YS20, 40S ribosom 22.4 32 0.0011 21.1 1.1 32 20-65 33-64 (82)
212 2eps_A POZ-, at HOOK-, and zin 22.3 33 0.0011 16.9 1.0 13 52-64 10-22 (54)
213 2emg_A Zinc finger protein 484 22.3 12 0.0004 17.7 -0.8 12 53-64 11-22 (46)
214 2a51_A Nucleocapsid protein; s 22.3 9.7 0.00033 19.2 -1.1 8 22-29 22-29 (39)
215 2eoe_A Zinc finger protein 347 22.3 14 0.00047 17.4 -0.5 13 52-64 10-22 (46)
216 2yrm_A B-cell lymphoma 6 prote 22.2 14 0.00048 17.3 -0.5 14 52-65 8-21 (43)
217 2en7_A Zinc finger protein 268 22.0 9.1 0.00031 17.8 -1.2 12 53-64 11-22 (44)
218 2eq1_A Zinc finger protein 347 21.9 12 0.0004 17.7 -0.8 12 53-64 11-22 (46)
219 2yth_A Zinc finger protein 224 21.8 13 0.00045 17.6 -0.6 12 53-64 11-22 (46)
220 2em6_A Zinc finger protein 224 21.8 14 0.00048 17.5 -0.5 13 52-64 10-22 (46)
221 2i5o_A DNA polymerase ETA; zin 21.7 34 0.0012 18.0 1.0 11 55-65 10-20 (39)
222 3axs_A Probable N(2),N(2)-dime 21.7 49 0.0017 24.3 2.2 8 22-29 245-252 (392)
223 2elz_A Zinc finger protein 224 21.7 13 0.00043 17.6 -0.7 13 52-64 10-22 (46)
224 4rxn_A Rubredoxin; electron tr 21.7 34 0.0011 19.1 1.0 9 23-31 38-46 (54)
225 2d9h_A Zinc finger protein 692 21.6 28 0.00096 18.1 0.7 14 52-65 36-49 (78)
226 2epx_A Zinc finger protein 28 21.6 14 0.00047 17.4 -0.6 12 53-64 11-22 (47)
227 2jz8_A Uncharacterized protein 21.6 32 0.0011 21.3 1.0 12 20-31 47-58 (87)
228 1x6e_A Zinc finger protein 24; 21.6 30 0.001 17.8 0.8 12 53-64 13-24 (72)
229 2ytn_A Zinc finger protein 347 21.5 12 0.00041 17.7 -0.8 13 52-64 10-22 (46)
230 2enh_A Zinc finger protein 28 21.4 12 0.00041 17.7 -0.8 12 53-64 11-22 (46)
231 1a1t_A Nucleocapsid protein; s 21.3 14 0.00049 19.7 -0.6 9 21-29 12-20 (55)
232 1x5w_A Zinc finger protein 64, 21.3 29 0.00099 17.8 0.7 13 52-64 7-19 (70)
233 2ytq_A Zinc finger protein 268 21.3 14 0.00049 17.5 -0.6 13 52-64 10-22 (46)
234 2en9_A Zinc finger protein 28 21.2 14 0.00047 17.5 -0.6 12 53-64 11-22 (46)
235 2l8e_A Polyhomeotic-like prote 21.2 6.2 0.00021 21.9 -2.2 10 22-31 19-28 (49)
236 2emz_A ZFP-95, zinc finger pro 21.1 13 0.00043 17.7 -0.8 12 53-64 11-22 (46)
237 2adr_A ADR1; transcription reg 21.1 28 0.00095 17.1 0.5 14 52-65 28-41 (60)
238 6rxn_A Rubredoxin; electron tr 21.1 37 0.0013 18.3 1.1 14 18-31 25-40 (46)
239 2yrc_A Protein transport prote 21.1 50 0.0017 18.5 1.7 38 16-64 4-43 (59)
240 2eop_A Zinc finger protein 268 20.8 13 0.00044 17.5 -0.8 12 53-64 11-22 (46)
241 2ep1_A Zinc finger protein 484 20.8 11 0.00037 17.8 -1.1 13 52-64 10-22 (46)
242 1b8t_A Protein (CRP1); LIM dom 20.8 19 0.00066 23.2 -0.1 38 22-65 116-153 (192)
243 1yc5_A NAD-dependent deacetyla 20.8 51 0.0018 22.4 2.0 11 21-31 145-155 (246)
244 4bbr_M Transcription initiatio 20.6 49 0.0017 23.8 2.0 30 22-65 22-53 (345)
245 3hcs_A TNF receptor-associated 20.5 8.5 0.00029 24.3 -1.9 39 20-65 109-148 (170)
246 2eou_A Zinc finger protein 473 20.5 13 0.00045 17.4 -0.8 12 53-64 11-22 (44)
247 2eom_A ZFP-95, zinc finger pro 20.5 13 0.00044 17.7 -0.9 13 52-64 10-22 (46)
248 2dar_A PDZ and LIM domain prot 20.4 38 0.0013 19.1 1.1 41 18-65 22-62 (90)
249 3v2d_5 50S ribosomal protein L 20.3 44 0.0015 18.9 1.3 14 18-31 27-40 (60)
250 2yuc_A TNF receptor-associated 20.3 3.7 0.00013 22.8 -3.3 40 18-64 13-54 (76)
251 2epz_A Zinc finger protein 28 20.2 14 0.00049 17.4 -0.7 12 53-64 11-22 (46)
252 2eq4_A Zinc finger protein 224 20.1 15 0.00051 17.2 -0.7 12 53-64 11-22 (46)
253 1twf_L ABC10-alpha, DNA-direct 20.1 38 0.0013 19.7 1.1 14 18-31 25-38 (70)
254 2aus_D NOP10, ribosome biogene 20.0 37 0.0013 19.5 1.0 11 21-31 17-27 (60)
No 1
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=89.29 E-value=0.73 Score=28.00 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=26.3
Q ss_pred eCCCCCCceeEEEeee-eeEEEEEeeeeceeeeEEeecccceee
Q 035291 23 ICSRCGGGASVADMKT-ATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 23 ~Cp~CGg~v~a~dv~s-~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
.||.||+.....+.++ .+.+--.-+..+.-....|..||..+-
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEee
Confidence 6999999864444333 222222344444446789999997653
No 2
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=88.78 E-value=0.19 Score=28.52 Aligned_cols=29 Identities=28% Similarity=0.605 Sum_probs=20.3
Q ss_pred ceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeeccccee
Q 035291 21 AGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVL 64 (68)
Q Consensus 21 ~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L 64 (68)
.-.||.||+.+. +. +...++.|..|+-..
T Consensus 18 ~~fCPkCG~~~~------------ma---~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVF------------LA---EHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCC------------CE---ECSSEEECTTTCCCE
T ss_pred cccCcCCCCcee------------Ee---ccCCEEECCCCCCEE
Confidence 467999999872 11 224589999998653
No 3
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.02 E-value=0.37 Score=26.83 Aligned_cols=29 Identities=34% Similarity=0.692 Sum_probs=19.5
Q ss_pred CceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccce
Q 035291 20 AAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAV 63 (68)
Q Consensus 20 a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~ 63 (68)
..--||+||.++.-++ ...+..|..||-.
T Consensus 18 ~~k~CP~CG~~~fm~~---------------~~~R~~C~kCG~t 46 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMAD---------------HGDRWACGKCGYT 46 (50)
T ss_dssp SSEECSSSCSSCEEEE---------------CSSEEECSSSCCE
T ss_pred ecccCCCCCCceEEec---------------CCCeEECCCCCCE
Confidence 3557999999872221 2367889888853
No 4
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=86.14 E-value=0.31 Score=35.60 Aligned_cols=44 Identities=20% Similarity=0.563 Sum_probs=28.9
Q ss_pred cCceeCCCCCCceeEEEee-----eeeEEEEEeeeecee--eeEEeecccc
Q 035291 19 PAAGICSRCGGGASVADMK-----TATRFCHVPFYWKSW--RAIICTFCGA 62 (68)
Q Consensus 19 ~a~g~Cp~CGg~v~a~dv~-----s~~rfCflPl~~k~k--r~~~Ct~C~r 62 (68)
...|.||-||+.-++..|+ .-.|++.=.+|--.| .+..|+.|+.
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEE 230 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCC
Confidence 4579999999999888776 244555545554433 3456666654
No 5
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=80.08 E-value=3.7 Score=23.61 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=23.2
Q ss_pred eCCCCCCceeEEEeee---eeEEEEEeeeeceeeeEEeecccceee
Q 035291 23 ICSRCGGGASVADMKT---ATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 23 ~Cp~CGg~v~a~dv~s---~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
.||.||++-...++.+ ++.=. =+-.+.-....|..||..+-
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~--~~~I~~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGR--KTVLKGIHGLYCVHCEESIM 47 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTE--EEEEEEEEEEEETTTCCEEC
T ss_pred ECCCCCCCeeEeEEEEEEEEECCE--EEEEcCceeEECCCCCCEEE
Confidence 5999998732333332 11111 12234456788999997654
No 6
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=73.46 E-value=1.4 Score=26.86 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=18.0
Q ss_pred eeeeeeccCceeCCCCCCceeEEEeee
Q 035291 12 RKVHKCKPAAGICSRCGGGASVADMKT 38 (68)
Q Consensus 12 ~kv~g~~~a~g~Cp~CGg~v~a~dv~s 38 (68)
+++.-+|++.=.||+||+.. .-|..+
T Consensus 18 k~ie~~q~~~y~Cp~CG~~~-v~r~at 43 (83)
T 1vq8_Z 18 AEIESEMNEDHACPNCGEDR-VDRQGT 43 (83)
T ss_dssp HHHHHHHHSCEECSSSCCEE-EEEEET
T ss_pred HHHHHhccccCcCCCCCCcc-eeccCC
Confidence 34556778888999999865 444443
No 7
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=73.14 E-value=1.7 Score=23.19 Aligned_cols=28 Identities=29% Similarity=0.750 Sum_probs=17.6
Q ss_pred eeCCCCCC-ceeEEEeeeeeEEEEEeeeeceeeeEEeeccccee
Q 035291 22 GICSRCGG-GASVADMKTATRFCHVPFYWKSWRAIICTFCGAVL 64 (68)
Q Consensus 22 g~Cp~CGg-~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L 64 (68)
-.||+||+ .+ ..| ....+.+|+.||..+
T Consensus 6 ~~CP~C~~~~l-~~d--------------~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 6 KVCPACESAEL-IYD--------------PERGEIVCAKCGYVI 34 (50)
T ss_dssp CSCTTTSCCCE-EEE--------------TTTTEEEESSSCCBC
T ss_pred EeCcCCCCcce-EEc--------------CCCCeEECcccCCcc
Confidence 36999998 43 222 234567788887654
No 8
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=71.75 E-value=4.2 Score=25.60 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=18.7
Q ss_pred eeCCCCCCceeEEEeeeeeEEEEEeeee--ceeeeEEeeccccee
Q 035291 22 GICSRCGGGASVADMKTATRFCHVPFYW--KSWRAIICTFCGAVL 64 (68)
Q Consensus 22 g~Cp~CGg~v~a~dv~s~~rfCflPl~~--k~kr~~~Ct~C~r~L 64 (68)
--||.||+.+. |-.- .....+.|..|+...
T Consensus 5 ~FCp~CgnlL~-------------~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 5 RFCRDCNNMLY-------------PREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CBCSSSCCBCE-------------EEEETTTTEEEEECSSSSCEE
T ss_pred CcccccCccCc-------------ccccCcCCCCEEECCcCCCee
Confidence 35999999882 2221 224568888887643
No 9
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=71.37 E-value=6.1 Score=21.54 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=22.0
Q ss_pred ceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 21 AGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 21 ~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
.-.||.||+.- |.=...++|====| .-.-|.|+-|+-+-+
T Consensus 15 ~~~Cp~Cg~~~-~~~~q~Q~rsadep----~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGNDT-AYWWEMQTRAGDEP----STIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSE-EEEEEECCSSSSCS----SEEEEEESSSCCEEE
T ss_pred EeECCCCCCCE-EEEEEeecccCCCC----CcEEEEcCCCCCEec
Confidence 45699999955 44334444300001 123477888887654
No 10
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=71.33 E-value=2.3 Score=29.77 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=13.7
Q ss_pred eeeeccCceeCCCCCCceeEEEe
Q 035291 14 VHKCKPAAGICSRCGGGASVADM 36 (68)
Q Consensus 14 v~g~~~a~g~Cp~CGg~v~a~dv 36 (68)
|-|+++- .||.||+.+.-..+
T Consensus 229 VygR~g~--pC~~CG~~I~~~~~ 249 (262)
T 1k3x_A 229 VFHRDGE--PCERCGSIIEKTTL 249 (262)
T ss_dssp STTCTTS--BCTTTCCBCEEEEE
T ss_pred EcCCCcC--CCCCCCCEeEEEEE
Confidence 4455443 39999999955444
No 11
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=71.17 E-value=2 Score=26.82 Aligned_cols=9 Identities=22% Similarity=0.630 Sum_probs=7.6
Q ss_pred eCCCCCCce
Q 035291 23 ICSRCGGGA 31 (68)
Q Consensus 23 ~Cp~CGg~v 31 (68)
-||.|||.+
T Consensus 6 FCp~Cgn~L 14 (113)
T 3h0g_I 6 YCIECNNML 14 (113)
T ss_dssp CCSSSCCCC
T ss_pred eCcCCCCEe
Confidence 489999988
No 12
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=69.77 E-value=6.2 Score=24.09 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=25.3
Q ss_pred CceeCCCCCCc-eeEEEeeeeeEEEEEeeeeceeeeEEeecccceeee
Q 035291 20 AAGICSRCGGG-ASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLKS 66 (68)
Q Consensus 20 a~g~Cp~CGg~-v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~~ 66 (68)
..=.||.||.. ++...|+.. ...-.+.|.+|+.....
T Consensus 22 t~F~CPfCnh~~sV~vkidk~----------~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRA----------RNTGVISCTVCLEEFQT 59 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETT----------TTEEEEEESSSCCEEEE
T ss_pred CeEcCCCCCCCCeEEEEEEcc----------CCEEEEEcccCCCeEEe
Confidence 45689999999 545555432 23567899999987643
No 13
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=63.60 E-value=3.6 Score=24.02 Aligned_cols=28 Identities=7% Similarity=0.107 Sum_probs=19.4
Q ss_pred eCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 23 ICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 23 ~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
.||.|+|.... +. ......|+.|++.+-
T Consensus 10 ~CP~ck~~L~~-~~--------------~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 10 VCPVTKGRLEY-HQ--------------DKQELWSRQAKLAYP 37 (68)
T ss_dssp BCSSSCCBCEE-ET--------------TTTEEEETTTTEEEE
T ss_pred ECCCCCCcCeE-eC--------------CCCEEEcCCCCcEec
Confidence 79999998843 32 235667888887654
No 14
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=62.53 E-value=5.9 Score=23.22 Aligned_cols=29 Identities=14% Similarity=0.356 Sum_probs=19.6
Q ss_pred eeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 22 GICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 22 g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
-.||.|+|.... |.+ .....|+.|++.+-
T Consensus 9 L~CP~ck~~L~~-~~~--------------~~~LiC~~cg~~YP 37 (70)
T 2js4_A 9 LVCPVCKGRLEF-QRA--------------QAELVCNADRLAFP 37 (70)
T ss_dssp CBCTTTCCBEEE-ETT--------------TTEEEETTTTEEEE
T ss_pred eECCCCCCcCEE-eCC--------------CCEEEcCCCCceec
Confidence 379999998843 322 35567888887654
No 15
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=61.85 E-value=2.8 Score=17.69 Aligned_cols=13 Identities=15% Similarity=0.654 Sum_probs=8.9
Q ss_pred eeEEeecccceee
Q 035291 53 RAIICTFCGAVLK 65 (68)
Q Consensus 53 r~~~Ct~C~r~L~ 65 (68)
+.|.|..|++...
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvh_A 2 KPFSCSLCPQRSR 14 (27)
T ss_dssp CCEECSSSSCEES
T ss_pred cCccCCCcChhhC
Confidence 3577888887654
No 16
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=61.00 E-value=6 Score=23.08 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=19.3
Q ss_pred eCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 23 ICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 23 ~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
.||.|+|.... +.+ .....|+.|++.+-
T Consensus 10 ~CP~ck~~L~~-~~~--------------~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 10 VCPLCKGPLVF-DKS--------------KDELICKGDRLAFP 37 (68)
T ss_dssp BCTTTCCBCEE-ETT--------------TTEEEETTTTEEEE
T ss_pred ECCCCCCcCeE-eCC--------------CCEEEcCCCCcEec
Confidence 79999998843 322 35667888887654
No 17
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=60.96 E-value=2.4 Score=23.77 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=21.5
Q ss_pred cCceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceeee
Q 035291 19 PAAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLKS 66 (68)
Q Consensus 19 ~a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~~ 66 (68)
+....|+.|+..+.+.++-+...--|= ..=|.|+.|++.|..
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a~~~~~H------~~CF~C~~C~~~L~~ 46 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQCDGRSFH------RCCFLCMVCRKNLDS 46 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEETTEEEE------SSSEECSSSCCEECS
T ss_pred CCCCcCcCcCccccCceeEEeCCcccc------cccCccCCCCCCCCC
Confidence 445689999998843221111111111 233568888888753
No 18
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=59.98 E-value=8.2 Score=25.12 Aligned_cols=41 Identities=37% Similarity=0.600 Sum_probs=25.7
Q ss_pred EeCCceeeeeeccCceeCCC--CCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 7 LVDQTRKVHKCKPAAGICSR--CGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 7 vcde~~kv~g~~~a~g~Cp~--CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
-+|++++|... .-.||+ ||.++--++ .+.+++|-.|+-.+.
T Consensus 107 ~~~~~~~~~~~---~~~c~~~~cg~g~fma~---------------h~~r~~cgkc~~t~~ 149 (152)
T 3u5c_f 107 KVDAEGKVTKL---RRECSNPTCGAGVFLAN---------------HKDRLYCGKCHSVYK 149 (152)
T ss_dssp EECSSSCEECC---SCBCCSTTSCSSSBEEE---------------CSSCEEESSSSSCCE
T ss_pred EEccCCeEEEC---cCcCCCccCCCceEecc---------------cCCCcccCCCceEEE
Confidence 35666666543 346999 999873322 235777888876543
No 19
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.51 E-value=2.3 Score=23.57 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=23.0
Q ss_pred ccCceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 18 KPAAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 18 ~~a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
...+..|+.|+..+...+.-....--|=| .=|.|+.|++.|.
T Consensus 6 ~~~~~~C~~C~~~I~~~~~v~a~~~~~H~------~CF~C~~C~~~L~ 47 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAEKVSSLGKDWHK------FCLKCERCSKTLT 47 (76)
T ss_dssp CCCCCBCTTTCCBCCTTTEEEETTEEEET------TTCBCSSSCCBCC
T ss_pred CCCCCCCcCCCCEeECCeEEEECCeEeeC------CCCCCCCCCCccC
Confidence 34567899999988532221111111112 2355888888775
No 20
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=58.42 E-value=2.9 Score=26.93 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=9.8
Q ss_pred ceeCCCCCCce
Q 035291 21 AGICSRCGGGA 31 (68)
Q Consensus 21 ~g~Cp~CGg~v 31 (68)
+..||+||+.-
T Consensus 107 ~~~CP~Cgs~~ 117 (139)
T 3a43_A 107 FLACPKCGSHD 117 (139)
T ss_dssp GCSCSSSSCCC
T ss_pred CCcCccccCCc
Confidence 78999999985
No 21
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.14 E-value=1.8 Score=24.98 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=23.9
Q ss_pred CceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceeee
Q 035291 20 AAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLKS 66 (68)
Q Consensus 20 a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~~ 66 (68)
....|+.||..+...++-....--|-| .=|.|+.|++.|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~------~CF~C~~C~~~L~~ 54 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHI------SCFRCSYCNNKLSL 54 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEET------TTCBCTTTCCBCCT
T ss_pred CCCcCccCCCccCCceeEEECCCEECC------CCCeeCCCCCCCCC
Confidence 456899999999543321111111112 23569999988863
No 22
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=58.05 E-value=7.4 Score=27.33 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=20.5
Q ss_pred eeeeccCceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccc
Q 035291 14 VHKCKPAAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGA 62 (68)
Q Consensus 14 v~g~~~a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r 62 (68)
|-|+++- .||+||+.+.-..+- ...-|+|+.|-+
T Consensus 237 VygR~G~--pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 237 VYGKTGE--KCSRCGAEIQKIKVA-------------GRGTHFCPVCQQ 270 (271)
T ss_dssp STTCTTS--BCTTTCCBCEEEEET-------------TEEEEECTTTSC
T ss_pred EccCCCC--CCCCCCCEeeEEEEC-------------CCceEECCCCCC
Confidence 4444333 399999999554443 345566666643
No 23
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=57.85 E-value=3.8 Score=17.23 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=8.1
Q ss_pred eEEeecccceee
Q 035291 54 AIICTFCGAVLK 65 (68)
Q Consensus 54 ~~~Ct~C~r~L~ 65 (68)
.|.|..|++...
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 1rik_A 2 KFACPECPKRFM 13 (29)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 467888877653
No 24
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=56.35 E-value=5.2 Score=23.39 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=19.3
Q ss_pred eCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 23 ICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 23 ~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
.||.|+|.... +. ......|+.|++.+-
T Consensus 10 ~CP~ck~~L~~-~~--------------~~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 10 ACPICKGPLKL-SA--------------DKTELISKGAGLAYP 37 (69)
T ss_dssp CCTTTCCCCEE-CT--------------TSSEEEETTTTEEEE
T ss_pred eCCCCCCcCeE-eC--------------CCCEEEcCCCCcEec
Confidence 79999998843 22 235667888887654
No 25
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=56.34 E-value=7.9 Score=23.02 Aligned_cols=30 Identities=17% Similarity=0.469 Sum_probs=21.5
Q ss_pred eeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 22 GICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 22 g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
-.||.|++-- .++.+.-..+.|..|++.|.
T Consensus 8 VKCp~C~niq--------------~VFShA~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 8 VKCPDCEHEQ--------------VIFDHPSTIVKCIICGRTVA 37 (66)
T ss_dssp EECTTTCCEE--------------EEESSCSSCEECSSSCCEEE
T ss_pred EECCCCCCce--------------EEEecCceEEEcccCCCEEe
Confidence 3577777754 34566677888888888875
No 26
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=56.12 E-value=3.7 Score=18.29 Aligned_cols=14 Identities=21% Similarity=0.674 Sum_probs=10.3
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 5 ~k~~~C~~C~k~f~ 18 (35)
T 1srk_A 5 KRPFVCRICLSAFT 18 (35)
T ss_dssp CSCEECSSSCCEES
T ss_pred CcCeeCCCCCcccC
Confidence 45688888888764
No 27
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=56.11 E-value=3.9 Score=17.02 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=7.9
Q ss_pred eEEeecccceee
Q 035291 54 AIICTFCGAVLK 65 (68)
Q Consensus 54 ~~~Ct~C~r~L~ 65 (68)
.|.|..|++...
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 467777777653
No 28
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=56.07 E-value=3.1 Score=22.27 Aligned_cols=40 Identities=23% Similarity=0.479 Sum_probs=24.2
Q ss_pred cCceeCCCCCCceeEEE--eeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 19 PAAGICSRCGGGASVAD--MKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 19 ~a~g~Cp~CGg~v~a~d--v~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
.....|..||..+...+ |+..- --|-|-++ .|+.|++.|.
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~-~~~H~~CF------~C~~C~~~L~ 50 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNG-ELYHEQCF------VCAQCFQQFP 50 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETT-EEEETTTS------SCTTTCCCCG
T ss_pred cCCccchhcCccccCCceEEEeCc-CeeCcCCC------cccCCCCCCC
Confidence 45668999999986443 22211 11233333 4888888875
No 29
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=55.37 E-value=5.7 Score=29.07 Aligned_cols=35 Identities=14% Similarity=0.560 Sum_probs=20.8
Q ss_pred ceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceeee
Q 035291 21 AGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLKS 66 (68)
Q Consensus 21 ~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~~ 66 (68)
..-|||||+.. -.-.+.. +.-.+|.|..|+-.+++
T Consensus 34 n~yCPnCG~~~-l~~f~nN----------~PVaDF~C~~C~EeyEL 68 (257)
T 4esj_A 34 QSYCPNCGNNP-LNHFENN----------RPVADFYCNHCSEEFEL 68 (257)
T ss_dssp HCCCTTTCCSS-CEEC--------------CCCEEECTTTCCEEEE
T ss_pred CCcCCCCCChh-hhhccCC----------CcccccccCCcchhhee
Confidence 35799999953 1112211 22357889999887664
No 30
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=55.28 E-value=4.1 Score=17.02 Aligned_cols=12 Identities=25% Similarity=0.913 Sum_probs=7.7
Q ss_pred eEEeecccceee
Q 035291 54 AIICTFCGAVLK 65 (68)
Q Consensus 54 ~~~Ct~C~r~L~ 65 (68)
.|.|..|++...
T Consensus 3 ~~~C~~C~~~f~ 14 (30)
T 2m0d_A 3 PYQCDYCGRSFS 14 (30)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCCCCcccC
Confidence 466777776543
No 31
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=60.20 E-value=2.5 Score=17.68 Aligned_cols=12 Identities=25% Similarity=0.747 Sum_probs=8.2
Q ss_pred eEEeecccceee
Q 035291 54 AIICTFCGAVLK 65 (68)
Q Consensus 54 ~~~Ct~C~r~L~ 65 (68)
.|.|..|++...
T Consensus 2 p~~C~~C~k~f~ 13 (26)
T 2lvu_A 2 PYVCERCGKRFV 13 (26)
Confidence 467888877653
No 32
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=55.17 E-value=4.9 Score=23.80 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=9.2
Q ss_pred eCCCCCCceeEEEeeeeeE
Q 035291 23 ICSRCGGGASVADMKTATR 41 (68)
Q Consensus 23 ~Cp~CGg~v~a~dv~s~~r 41 (68)
.|| ||... .+|=...|+
T Consensus 6 ~C~-C~~~~-~~~~~~kT~ 22 (71)
T 1gh9_A 6 RCD-CGRAL-YSREGAKTR 22 (71)
T ss_dssp EET-TSCCE-EEETTCSEE
T ss_pred ECC-CCCEE-EEcCCCcEE
Confidence 577 77776 444333333
No 33
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=55.17 E-value=4.1 Score=17.11 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=8.1
Q ss_pred eEEeecccceee
Q 035291 54 AIICTFCGAVLK 65 (68)
Q Consensus 54 ~~~Ct~C~r~L~ 65 (68)
.|.|..|++...
T Consensus 3 ~~~C~~C~k~f~ 14 (28)
T 2kvf_A 3 PYSCSVCGKRFS 14 (28)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCCCcccC
Confidence 467888877643
No 34
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=54.04 E-value=9.2 Score=22.27 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=19.7
Q ss_pred eeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 22 GICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 22 g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
-+||.|+|.+.. |. ......|+.|++.+.
T Consensus 11 L~CP~ck~~L~~-~~--------------~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 11 LACPKDKGPLRY-LE--------------SEQLLVNERLNLAYR 39 (67)
T ss_dssp CBCTTTCCBCEE-ET--------------TTTEEEETTTTEEEE
T ss_pred hCCCCCCCcCeE-eC--------------CCCEEEcCCCCcccc
Confidence 379999998832 32 235667888887654
No 35
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=53.19 E-value=7.7 Score=21.22 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=12.7
Q ss_pred eeeccCceeCCCCCCce
Q 035291 15 HKCKPAAGICSRCGGGA 31 (68)
Q Consensus 15 ~g~~~a~g~Cp~CGg~v 31 (68)
.|.+...-.||.||+.-
T Consensus 3 ~~~~t~~~~Cp~Cg~~~ 19 (50)
T 1tfi_A 3 GGTQTDLFTCGKCKKKN 19 (50)
T ss_dssp SCEECCCSCCSSSCSSC
T ss_pred CCceeCccCCCCCCCCE
Confidence 45556667899999876
No 36
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=52.75 E-value=5.4 Score=26.59 Aligned_cols=37 Identities=24% Similarity=0.576 Sum_probs=22.6
Q ss_pred ccCceeCCCCCCceeEEEeeeeeEEEEE-eeeeceeeeEEeeccc
Q 035291 18 KPAAGICSRCGGGASVADMKTATRFCHV-PFYWKSWRAIICTFCG 61 (68)
Q Consensus 18 ~~a~g~Cp~CGg~v~a~dv~s~~rfCfl-Pl~~k~kr~~~Ct~C~ 61 (68)
|++...||+||... ...||=| =|.-..|.-|.|..||
T Consensus 68 q~~~~~C~~Cg~~f-------~~Y~C~~C~l~d~~k~~yHC~~Cg 105 (143)
T 2dkt_A 68 QHAQQTCEDCSTLF-------GEYYCSICHLFDKDKRQYHCESCG 105 (143)
T ss_dssp ECSCSBCSSSCCBS-------CSEECSSSCCEECSSSEEEETTTT
T ss_pred ccccCcCCCCCccc-------eeeEeceeecccCCCceecCCCCC
Confidence 45566899999766 3455543 2223456666666665
No 37
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=51.91 E-value=4.6 Score=17.81 Aligned_cols=14 Identities=14% Similarity=0.448 Sum_probs=9.9
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 5 ~k~~~C~~C~k~f~ 18 (35)
T 2elx_A 5 SSGYVCALCLKKFV 18 (35)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCcchhC
Confidence 45678888887654
No 38
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=49.64 E-value=8.2 Score=25.42 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=21.5
Q ss_pred cCceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccce
Q 035291 19 PAAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAV 63 (68)
Q Consensus 19 ~a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~ 63 (68)
.....|+.||+.. +|.+ ....|+.|++.
T Consensus 138 vv~a~~~~~g~~m-------------~~~~----~~~~cp~~g~~ 165 (179)
T 3m7n_A 138 VLRALCSNCKTEM-------------VREG----DILKCPECGRV 165 (179)
T ss_dssp EEECBCTTTCCBC-------------EECS----SSEECSSSCCE
T ss_pred EEEecccccCCce-------------EECC----CEEECCCCCCE
Confidence 4556788999887 7765 57889999864
No 39
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=48.88 E-value=5.5 Score=24.14 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=8.6
Q ss_pred ceeCCCCCCce
Q 035291 21 AGICSRCGGGA 31 (68)
Q Consensus 21 ~g~Cp~CGg~v 31 (68)
---||+|||.-
T Consensus 30 k~FCp~CGn~T 40 (79)
T 2con_A 30 RVFCGHCGNKT 40 (79)
T ss_dssp CCSCSSSCCSC
T ss_pred cccccccCccc
Confidence 34699999974
No 40
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.79 E-value=9.1 Score=17.46 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=9.9
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (37)
T 2elm_A 7 GHLYYCSQCHYSSI 20 (37)
T ss_dssp SCEEECSSSSCEEE
T ss_pred CcCeECCCCCcccC
Confidence 35678888887654
No 41
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=47.86 E-value=4.6 Score=26.18 Aligned_cols=10 Identities=20% Similarity=0.620 Sum_probs=8.2
Q ss_pred eeCCCCCCce
Q 035291 22 GICSRCGGGA 31 (68)
Q Consensus 22 g~Cp~CGg~v 31 (68)
--||.|||..
T Consensus 25 ~FCPeCgNmL 34 (133)
T 3qt1_I 25 RFCRDCNNML 34 (133)
T ss_dssp CBCTTTCCBC
T ss_pred eeCCCCCCEe
Confidence 4599999988
No 42
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.41 E-value=6.7 Score=17.55 Aligned_cols=14 Identities=14% Similarity=0.546 Sum_probs=9.5
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elq_A 7 GKPFKCSLCEYATR 20 (36)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCccCCCCCchhC
Confidence 35677888877654
No 43
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=45.93 E-value=5.9 Score=16.75 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=7.7
Q ss_pred eEEeeccccee
Q 035291 54 AIICTFCGAVL 64 (68)
Q Consensus 54 ~~~Ct~C~r~L 64 (68)
.|.|..|++..
T Consensus 3 ~~~C~~C~k~f 13 (27)
T 2kvg_A 3 PYRCPLCRAGC 13 (27)
T ss_dssp TEEETTTTEEE
T ss_pred CcCCCCCCccc
Confidence 46788887764
No 44
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=45.86 E-value=13 Score=23.61 Aligned_cols=11 Identities=36% Similarity=1.177 Sum_probs=8.1
Q ss_pred eeCCCCCCcee
Q 035291 22 GICSRCGGGAS 32 (68)
Q Consensus 22 g~Cp~CGg~v~ 32 (68)
..||.||+.+.
T Consensus 149 ~~Cp~CG~~~~ 159 (165)
T 2lcq_A 149 GVCPDCGSKVK 159 (165)
T ss_dssp GBCTTTCCBEE
T ss_pred CcCCCCCCcce
Confidence 47888888763
No 45
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=45.84 E-value=7.7 Score=22.69 Aligned_cols=9 Identities=33% Similarity=0.862 Sum_probs=7.6
Q ss_pred CCCCCCcee
Q 035291 24 CSRCGGGAS 32 (68)
Q Consensus 24 Cp~CGg~v~ 32 (68)
||+|+..+.
T Consensus 28 CP~C~~~~~ 36 (86)
T 2ct7_A 28 CAQCSFGFI 36 (86)
T ss_dssp CSSSCCCEE
T ss_pred CcCCCchhe
Confidence 999999873
No 46
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=45.28 E-value=17 Score=22.48 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=18.0
Q ss_pred EEEeCCceeeeeeccCce-eCCCCCCce
Q 035291 5 CFLVDQTRKVHKCKPAAG-ICSRCGGGA 31 (68)
Q Consensus 5 ~fvcde~~kv~g~~~a~g-~Cp~CGg~v 31 (68)
+|-|+=..+-+..+..|. .|++||+..
T Consensus 48 FFkC~C~~Rt~sl~r~P~~~C~~Cg~~~ 75 (92)
T 2kwq_A 48 FFKCPCGNRTISLDRLPKKHCSTCGLFK 75 (92)
T ss_dssp EEECTTSCEEEESSSSCCSCCTTTCSCC
T ss_pred EEECCCCCceeEeeeCCCCCCCCCCCCc
Confidence 456653344444577777 999999874
No 47
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.99 E-value=3.3 Score=22.72 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=24.3
Q ss_pred eeeccCceeCCCCCCceeEEE--eeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 15 HKCKPAAGICSRCGGGASVAD--MKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 15 ~g~~~a~g~Cp~CGg~v~a~d--v~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
+........|+.||..+.+.+ ++. ..--|=|-+ |.|+.|++.|.
T Consensus 5 ~~~~~~~~~C~~C~~~I~~~~~~~~a-~~~~~H~~C------F~C~~C~~~L~ 50 (77)
T 1g47_A 5 MANALASATCERCKGGFAPAEKIVNS-NGELYHEQC------FVCAQCFQQFP 50 (77)
T ss_dssp CCSCCCCCBCSSSCCBCCSTTTCEEE-TTEEECTTT------CCCTTTCCCCG
T ss_pred hccCCCCCCchhcCCccCCCceEEEe-CccEecccc------CeECCCCCCCC
Confidence 334456788999999885322 111 111112222 45888887775
No 48
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.93 E-value=4.2 Score=22.00 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=20.2
Q ss_pred eeCCCCCCceeEEE--eeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 22 GICSRCGGGASVAD--MKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 22 g~Cp~CGg~v~a~d--v~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
..|+.||..+...+ |+. .---|-|-+ |.|+.|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a-~~~~~H~~C------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY-KGSSWHETC------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE-TTEEEETTT------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEE-CcCeecccC------CcccccCCccC
Confidence 47999999886432 222 111112222 44777777764
No 49
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=50.68 E-value=4.6 Score=16.99 Aligned_cols=12 Identities=17% Similarity=0.653 Sum_probs=7.8
Q ss_pred eEEeecccceee
Q 035291 54 AIICTFCGAVLK 65 (68)
Q Consensus 54 ~~~Ct~C~r~L~ 65 (68)
.|.|..|++...
T Consensus 3 ~~~C~~C~k~f~ 14 (30)
T 2lvr_A 3 PYVCIHCQRQFA 14 (30)
Confidence 467777776543
No 50
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=43.89 E-value=4.9 Score=22.15 Aligned_cols=10 Identities=20% Similarity=0.680 Sum_probs=5.9
Q ss_pred eCCCCCCcee
Q 035291 23 ICSRCGGGAS 32 (68)
Q Consensus 23 ~Cp~CGg~v~ 32 (68)
.|+.||..+.
T Consensus 2 ~C~~C~~~I~ 11 (76)
T 1iml_A 2 KCPKCDKEVY 11 (76)
T ss_dssp BCTTTSSBCC
T ss_pred cCCCCCCEEE
Confidence 3666666653
No 51
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=49.84 E-value=4.8 Score=17.00 Aligned_cols=11 Identities=27% Similarity=0.915 Sum_probs=7.5
Q ss_pred eEEeeccccee
Q 035291 54 AIICTFCGAVL 64 (68)
Q Consensus 54 ~~~Ct~C~r~L 64 (68)
.|.|..|++..
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 2lvt_A 2 PCQCVMCGKAF 12 (29)
Confidence 46777787654
No 52
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.80 E-value=8.5 Score=17.17 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=9.5
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elv_A 7 GLLYDCHICERKFK 20 (36)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCccC
Confidence 45677888887653
No 53
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=43.54 E-value=6.5 Score=21.17 Aligned_cols=11 Identities=18% Similarity=0.643 Sum_probs=9.0
Q ss_pred eeCCCCCCcee
Q 035291 22 GICSRCGGGAS 32 (68)
Q Consensus 22 g~Cp~CGg~v~ 32 (68)
..|+.||..+.
T Consensus 3 ~~C~~C~~~I~ 13 (65)
T 2iyb_E 3 VVCQGCHNAID 13 (65)
T ss_dssp EECTTTSSEEC
T ss_pred CCCcCCCCeec
Confidence 47999999885
No 54
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.95 E-value=17 Score=21.36 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=22.9
Q ss_pred ceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceeee
Q 035291 21 AGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLKS 66 (68)
Q Consensus 21 ~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~~ 66 (68)
.-.||.|++-- -++.+.-..+.|..|+..|.-
T Consensus 15 ~VkCp~C~~~q--------------~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 15 RVKCIDCGNEQ--------------IVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp EEECSSSCCEE--------------EEESSCSSCEECSSSCCEEEE
T ss_pred EEECCCCCCee--------------EEEecCCeEEEccCcCCEEec
Confidence 34688888754 235666788889999988753
No 55
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.67 E-value=7.8 Score=17.16 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=9.4
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elt_A 7 GKPYKCPQCSYASA 20 (36)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCCCCCCCCcccC
Confidence 45677888877643
No 56
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.40 E-value=9 Score=17.19 Aligned_cols=14 Identities=29% Similarity=0.690 Sum_probs=9.1
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (37)
T 2elp_A 7 GRAMKCPYCDFYFM 20 (37)
T ss_dssp CCCEECSSSSCEEC
T ss_pred CCCeECCCCChhhc
Confidence 34577888877653
No 57
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=42.00 E-value=3.5 Score=17.25 Aligned_cols=10 Identities=20% Similarity=0.916 Sum_probs=5.8
Q ss_pred EEeeccccee
Q 035291 55 IICTFCGAVL 64 (68)
Q Consensus 55 ~~Ct~C~r~L 64 (68)
|.|..|++..
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 4566666543
No 58
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=41.85 E-value=8.8 Score=17.67 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=9.4
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 9 ~~~~~C~~C~k~f~ 22 (42)
T 2epc_A 9 ETPYLCGQCGKSFT 22 (42)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCeECCCCCcccC
Confidence 35577888877653
No 59
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=41.70 E-value=7.5 Score=23.35 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=22.1
Q ss_pred eeCCCCCCceeEEE--eeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 22 GICSRCGGGASVAD--MKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 22 g~Cp~CGg~v~a~d--v~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
+.|..|+..+.+.| |+. ..--|=|-+ |.|+.|++.|.
T Consensus 67 ~~C~~C~~~I~~~e~~~~a-~~~~~H~~C------F~C~~C~~~L~ 105 (131)
T 2xjy_A 67 GLCASCDKRIRAYEMTMRV-KDKVYHLEC------FKCAACQKHFC 105 (131)
T ss_dssp EECTTTCCEECTTSEEEEE-TTEEEEGGG------CBCTTTCCBCC
T ss_pred cChhhcCCccCccceeEee-CCceECccC------cccCCCCCCCC
Confidence 48999999996532 222 111122333 45888888873
No 60
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=41.15 E-value=7.2 Score=26.27 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=20.6
Q ss_pred eeccCceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccce
Q 035291 16 KCKPAAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAV 63 (68)
Q Consensus 16 g~~~a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~ 63 (68)
+.-.-.+.||.||+. | .++| - .+. -+.|..||..
T Consensus 9 ~~~~~~~~CP~Cg~~----d---~~~~--~---~dg--~~~C~~Cg~~ 42 (255)
T 1nui_A 9 SVFLYHIPCDNCGSS----D---GNSL--F---SDG--HTFCYVCEKW 42 (255)
T ss_dssp -CEEEEECCSSSCCS----S---CEEE--E---TTS--CEEETTTCCE
T ss_pred cceecCCcCCCCCCC----C---CceE--e---CCC--CeecccCCCc
Confidence 444447899999996 2 1222 1 133 3889999864
No 61
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=41.12 E-value=8.9 Score=24.39 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=13.5
Q ss_pred eccCceeCCCCCCceeEE
Q 035291 17 CKPAAGICSRCGGGASVA 34 (68)
Q Consensus 17 ~~~a~g~Cp~CGg~v~a~ 34 (68)
.....-.|||||..++|.
T Consensus 66 ~~s~~~~C~nC~R~vaa~ 83 (99)
T 3mhs_C 66 ESSQYIHCENCGRDVSAN 83 (99)
T ss_dssp TTSCEEECTTTCCEEEGG
T ss_pred cCCCeEECCCCCCCchhh
Confidence 345567899999998653
No 62
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.99 E-value=6.5 Score=22.30 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=21.0
Q ss_pred ceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 21 AGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 21 ~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
+..|+.||..+...++-...---|=| .=|.|+.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~------~CF~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHV------SCFKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECT------TTCBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEECCccccc------ccCCcCcCCCCcC
Confidence 45799999988533221111001112 2356888887774
No 63
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=40.83 E-value=8.2 Score=21.80 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=8.3
Q ss_pred eeCCCCCCce
Q 035291 22 GICSRCGGGA 31 (68)
Q Consensus 22 g~Cp~CGg~v 31 (68)
-.|||||=.+
T Consensus 24 IrCpyCGyri 33 (48)
T 4ayb_P 24 VRCPYCGYKI 33 (48)
T ss_dssp SCCTTTCCSC
T ss_pred cccCccCcEE
Confidence 3699999887
No 64
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=40.59 E-value=11 Score=20.53 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=21.6
Q ss_pred ceeCCCCCCceeE-----EEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 21 AGICSRCGGGASV-----ADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 21 ~g~Cp~CGg~v~a-----~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
...|+.||..+.. .-|+. ..--|=| .=|.|+.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a-~~~~~H~------~CF~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY-EGQSWHD------YCFHCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE-TTEEEET------TTCBCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCceeEEE-CcceeCc------ccCEehhcCCCCC
Confidence 3589999999863 22221 1111112 2355888888875
No 65
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=40.47 E-value=8.8 Score=17.74 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=9.7
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (42)
T 2el5_A 8 ENPYECSECGKAFN 21 (42)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCccCCCcChhhC
Confidence 45678888887653
No 66
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=40.18 E-value=8.1 Score=17.73 Aligned_cols=13 Identities=31% Similarity=0.950 Sum_probs=9.0
Q ss_pred eeEEeecccceee
Q 035291 53 RAIICTFCGAVLK 65 (68)
Q Consensus 53 r~~~Ct~C~r~L~ 65 (68)
+.|.|..|++...
T Consensus 5 k~~~C~~C~k~f~ 17 (39)
T 1njq_A 5 RSYTCSFCKREFR 17 (39)
T ss_dssp SSEECTTTCCEES
T ss_pred CceECCCCCcccC
Confidence 4577888887653
No 67
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=39.72 E-value=14 Score=25.82 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=10.6
Q ss_pred eCCCCCCceeEEEe
Q 035291 23 ICSRCGGGASVADM 36 (68)
Q Consensus 23 ~Cp~CGg~v~a~dv 36 (68)
.||+||+.+.-..+
T Consensus 242 pC~~CG~~I~~~~~ 255 (268)
T 1k82_A 242 PCRVCGTPIVATKH 255 (268)
T ss_dssp BCTTTCCBCEEEEE
T ss_pred CCCCCCCEeeEEEE
Confidence 39999999955444
No 68
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=39.67 E-value=20 Score=19.94 Aligned_cols=26 Identities=31% Similarity=0.677 Sum_probs=18.3
Q ss_pred eCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEee--cccceee
Q 035291 23 ICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICT--FCGAVLK 65 (68)
Q Consensus 23 ~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct--~C~r~L~ 65 (68)
.||.|.|.....+ ....|+ .|++.+-
T Consensus 12 ~CP~c~~~L~~~~-----------------~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 12 ACPACHAPLEERD-----------------AELICTGQDCGLAYP 39 (56)
T ss_dssp CCSSSCSCEEEET-----------------TEEEECSSSCCCEEE
T ss_pred eCCCCCCcceecC-----------------CEEEcCCcCCCcEEe
Confidence 7999999873322 566788 7877654
No 69
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=39.47 E-value=15 Score=25.91 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=11.1
Q ss_pred eeCCCCCCceeEEEe
Q 035291 22 GICSRCGGGASVADM 36 (68)
Q Consensus 22 g~Cp~CGg~v~a~dv 36 (68)
-.||+||+.+.-..+
T Consensus 246 ~pC~~CG~~I~~~~~ 260 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVV 260 (273)
T ss_dssp SBCTTTCCBCEEEEE
T ss_pred CCCCCCCCeEEEEEE
Confidence 359999999955444
No 70
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=39.00 E-value=15 Score=25.76 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=10.7
Q ss_pred eCCCCCCceeEEEe
Q 035291 23 ICSRCGGGASVADM 36 (68)
Q Consensus 23 ~Cp~CGg~v~a~dv 36 (68)
.||+||+.+.-..+
T Consensus 237 pC~~CG~~I~~~~~ 250 (266)
T 1ee8_A 237 PCPACGRPVERRVV 250 (266)
T ss_dssp BCTTTCCBCEEEES
T ss_pred CCCCCCCEeeEEEE
Confidence 39999999955444
No 71
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=38.96 E-value=16 Score=22.43 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=6.3
Q ss_pred eccCceeCCCCCCc
Q 035291 17 CKPAAGICSRCGGG 30 (68)
Q Consensus 17 ~~~a~g~Cp~CGg~ 30 (68)
..++...|.+||.-
T Consensus 69 ~~p~~~~C~~CG~~ 82 (119)
T 2kdx_A 69 DEKVELECKDCSHV 82 (119)
T ss_dssp EECCEEECSSSSCE
T ss_pred eccceEEcCCCCCE
Confidence 34444444444443
No 72
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.80 E-value=9.7 Score=17.85 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=9.6
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2yu5_A 10 ENPFKCSKCDRVFT 23 (44)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCeECCCCCchhC
Confidence 45677888887654
No 73
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.61 E-value=11 Score=16.71 Aligned_cols=13 Identities=23% Similarity=0.812 Sum_probs=8.8
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 7 ~k~~~C~~C~k~f 19 (36)
T 2els_A 7 GKIFTCEYCNKVF 19 (36)
T ss_dssp CCCEECTTTCCEE
T ss_pred CCCEECCCCCcee
Confidence 3557788887764
No 74
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=38.56 E-value=4 Score=20.49 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=15.3
Q ss_pred EEEeCCceeeeeeccCceeCCCCCCc
Q 035291 5 CFLVDQTRKVHKCKPAAGICSRCGGG 30 (68)
Q Consensus 5 ~fvcde~~kv~g~~~a~g~Cp~CGg~ 30 (68)
+|-|++..-+...=+.+..|.+||..
T Consensus 3 C~~Cg~~GH~~~~C~~~~~C~~Cg~~ 28 (37)
T 2bl6_A 3 CYNCGKPGHLSSQCRAPKVCFKCKQP 28 (37)
T ss_dssp BSSSCCSSCCTTTSSCBTTCSSCCCT
T ss_pred ccccCCCCcchhhCcCcCeEccCCCc
Confidence 34566555444444556778888753
No 75
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=38.23 E-value=37 Score=25.76 Aligned_cols=41 Identities=20% Similarity=0.506 Sum_probs=25.5
Q ss_pred cCceeCCCCCCceeEEEeeeeeEEEEEeeeecee-eeEEeeccccee
Q 035291 19 PAAGICSRCGGGASVADMKTATRFCHVPFYWKSW-RAIICTFCGAVL 64 (68)
Q Consensus 19 ~a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~k-r~~~Ct~C~r~L 64 (68)
..+..||+||.... +....==||.+-+.= -.+.|..||-+-
T Consensus 10 ~~~s~Cp~C~~~g~-----t~~~~~~IP~F~eVii~Sf~C~~CGyrn 51 (404)
T 2qkd_A 10 SIESLCMNCYRNGT-----TRLLLTKIPFFREIIVSSFSCEHCGWNN 51 (404)
T ss_dssp -CEEECTTTSSEEE-----EEEEEEEETTTEEEEEEEEECTTTCCEE
T ss_pred CccccCCCCCCCce-----EEEEEEcCCCCceEEEEEEECCCCCCch
Confidence 35788999996551 111122368655543 678899999764
No 76
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.05 E-value=10 Score=17.94 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=9.8
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (44)
T 2epv_A 10 EKPYECNECGKAFI 23 (44)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCcccC
Confidence 45678888887653
No 77
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.01 E-value=9.5 Score=17.87 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=9.3
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2emb_A 10 RKRYECSKCQATFN 23 (44)
T ss_dssp CSSEECTTTCCEES
T ss_pred CCCeECCCCCCccC
Confidence 34577888877654
No 78
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.79 E-value=11 Score=17.87 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=9.7
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em7_A 10 EKPYKCEECGKGFI 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCccCCCccchhC
Confidence 45678888887653
No 79
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=37.71 E-value=14 Score=21.52 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=5.9
Q ss_pred cCceeCCCCCCce
Q 035291 19 PAAGICSRCGGGA 31 (68)
Q Consensus 19 ~a~g~Cp~CGg~v 31 (68)
++.=.|..||.-+
T Consensus 19 ~v~Y~C~~Cg~~~ 31 (63)
T 3h0g_L 19 TMIYLCADCGARN 31 (63)
T ss_dssp CCCCBCSSSCCBC
T ss_pred CeEEECCCCCCee
Confidence 3444455554443
No 80
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.24 E-value=11 Score=17.89 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=9.9
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2enc_A 10 EKPFKCEECGKGFY 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCcCCCCCCCcCC
Confidence 45688888887653
No 81
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.17 E-value=11 Score=17.80 Aligned_cols=14 Identities=14% Similarity=0.456 Sum_probs=9.7
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytf_A 10 EKPFECSECQKAFN 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCcCCCCCCcccC
Confidence 45678888887653
No 82
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.16 E-value=10 Score=17.60 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=9.4
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2eof_A 10 EKPYECNECQKAFN 23 (44)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCeECCCCCcccC
Confidence 45577888877653
No 83
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.98 E-value=12 Score=17.74 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=9.5
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2emi_A 10 ERHYECSECGKAFI 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCCCCCCCCcccC
Confidence 45677888887653
No 84
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=36.91 E-value=13 Score=18.56 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=9.5
Q ss_pred eEEeecccceee
Q 035291 54 AIICTFCGAVLK 65 (68)
Q Consensus 54 ~~~Ct~C~r~L~ 65 (68)
++.|++|..++-
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 678999988764
No 85
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.72 E-value=11 Score=17.83 Aligned_cols=14 Identities=21% Similarity=0.674 Sum_probs=9.7
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eml_A 10 EKPYECSVCGKAFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCCCcCCccC
Confidence 45678888887654
No 86
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.53 E-value=11 Score=17.76 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=9.6
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2epw_A 10 EKPCKCTECGKAFC 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCCCCCCccC
Confidence 45677888887653
No 87
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.52 E-value=11 Score=17.74 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=9.3
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eow_A 10 EKPYKCNECGKAFR 23 (46)
T ss_dssp CCCEECTTSCCEES
T ss_pred CCCeeccccCChhc
Confidence 45677888877643
No 88
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.50 E-value=12 Score=17.76 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=9.7
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2eoo_A 10 ERPYGCNECGKNFG 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCEEccccCcccC
Confidence 45678888887653
No 89
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=36.31 E-value=23 Score=17.86 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=10.1
Q ss_pred eeCCCCCCceeEE
Q 035291 22 GICSRCGGGASVA 34 (68)
Q Consensus 22 g~Cp~CGg~v~a~ 34 (68)
=.|+.|||-+.+.
T Consensus 7 Y~C~~CGnivev~ 19 (36)
T 1dxg_A 7 YKCELCGQVVKVL 19 (36)
T ss_dssp EECTTTCCEEEEE
T ss_pred EEcCCCCcEEEEE
Confidence 4699999988554
No 90
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.30 E-value=12 Score=17.74 Aligned_cols=14 Identities=14% Similarity=0.451 Sum_probs=9.0
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eoy_A 10 EKCFKCNKCEKTFS 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCEECcCCCCcCC
Confidence 34577777777543
No 91
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.25 E-value=11 Score=17.71 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=9.5
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yts_A 10 EKPYICNECGKSFI 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCEECCCCChhhC
Confidence 45677888877653
No 92
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=36.13 E-value=35 Score=23.25 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=14.4
Q ss_pred EEeCCceeeeeeccCceeCCCCCCce
Q 035291 6 FLVDQTRKVHKCKPAAGICSRCGGGA 31 (68)
Q Consensus 6 fvcde~~kv~g~~~a~g~Cp~CGg~v 31 (68)
|-+|++++|... .-.||+||-++
T Consensus 101 y~Vd~~Gkv~~~---~~~Cp~Cg~g~ 123 (189)
T 2xzm_9 101 YKLENNGKVSLQ---QKGCPKCGPGI 123 (189)
T ss_dssp EEEETTTEEEEC---SEECSTTCSSC
T ss_pred EEECCCceEEEc---cccCCccCCCc
Confidence 334555555433 36899999776
No 93
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.85 E-value=11 Score=17.75 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=9.4
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytj_A 10 EKPYICAECGKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCChhhC
Confidence 35577888877653
No 94
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.78 E-value=11 Score=17.67 Aligned_cols=14 Identities=21% Similarity=0.866 Sum_probs=9.4
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eme_A 10 EKPYVCDYCGKAFG 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCChhhC
Confidence 35577888877653
No 95
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.76 E-value=12 Score=17.56 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=9.5
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2yrj_A 10 EKPYRCGECGKAFA 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCccC
Confidence 45677888877653
No 96
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=35.73 E-value=5.3 Score=16.63 Aligned_cols=10 Identities=20% Similarity=0.610 Sum_probs=6.1
Q ss_pred EEeeccccee
Q 035291 55 IICTFCGAVL 64 (68)
Q Consensus 55 ~~Ct~C~r~L 64 (68)
|.|..|++..
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 4566666654
No 97
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=35.69 E-value=11 Score=27.37 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=13.5
Q ss_pred eeeeeccCceeCCCCCCceeEEEe
Q 035291 13 KVHKCKPAAGICSRCGGGASVADM 36 (68)
Q Consensus 13 kv~g~~~a~g~Cp~CGg~v~a~dv 36 (68)
+|-|++ .||+||..+.-..+
T Consensus 247 ~VYgR~----pC~~CGt~I~~~~~ 266 (287)
T 3w0f_A 247 KVYKRP----NCDQCHSKITVCRF 266 (287)
T ss_dssp SSTTCS----BCTTTCCBCEEECS
T ss_pred EEECCC----CCCCCCCEEEEEEe
Confidence 345554 69999999854443
No 98
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.66 E-value=13 Score=17.42 Aligned_cols=14 Identities=14% Similarity=0.475 Sum_probs=9.8
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (44)
T 2emx_A 8 EKPFGCSCCEKAFS 21 (44)
T ss_dssp CCCEECSSSSCEES
T ss_pred CcCccCCCCCcccC
Confidence 45678888887654
No 99
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.52 E-value=12 Score=17.79 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=9.4
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2em5_A 10 TKSHQCHECGRGFT 23 (46)
T ss_dssp SCSEECSSSCCEES
T ss_pred CCCeECCcCCCccC
Confidence 35577888877653
No 100
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.51 E-value=2.4 Score=24.13 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=10.9
Q ss_pred cCceeCCCCCCcee
Q 035291 19 PAAGICSRCGGGAS 32 (68)
Q Consensus 19 ~a~g~Cp~CGg~v~ 32 (68)
+....|+.||..+.
T Consensus 13 ~~~~~C~~C~~~I~ 26 (82)
T 2co8_A 13 GAGDLCALCGEHLY 26 (82)
T ss_dssp CSSCBCSSSCCBCC
T ss_pred CCCCCCcccCCCcc
Confidence 45567999999884
No 101
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.35 E-value=11 Score=17.76 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=9.2
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2eor_A 10 EKPYNCEECGKAFI 23 (46)
T ss_dssp CCSEECTTTCCEES
T ss_pred CcCccCCCCCCCcC
Confidence 45577888877653
No 102
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.23 E-value=12 Score=17.62 Aligned_cols=14 Identities=21% Similarity=0.719 Sum_probs=9.3
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emp_A 10 VKPYMCNECGKAFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCchhC
Confidence 45577888877653
No 103
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.15 E-value=13 Score=17.56 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=9.2
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emy_A 10 ENPYECHECGKAFS 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CcCcCCCCCCcccC
Confidence 35577888877653
No 104
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.12 E-value=12 Score=17.69 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=9.5
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2eq0_A 10 EKPYKCHECGKVFR 23 (46)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCeECCCCCchhC
Confidence 45677888877653
No 105
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.00 E-value=6 Score=16.28 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=6.1
Q ss_pred EEeeccccee
Q 035291 55 IICTFCGAVL 64 (68)
Q Consensus 55 ~~Ct~C~r~L 64 (68)
|.|..|++..
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 4567776654
No 106
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.99 E-value=13 Score=17.61 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=9.5
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2ytp_A 10 ERHYECSECGKAFA 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCcCCcccC
Confidence 45677888877643
No 107
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=34.99 E-value=12 Score=17.73 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=9.4
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emj_A 10 EKPFECAECGKSFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCEECCCCCcccC
Confidence 45677888877653
No 108
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.95 E-value=13 Score=17.61 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=9.6
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yto_A 10 EKPYKCSDCGKAFT 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCEECcccCCccC
Confidence 45678888887653
No 109
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=34.84 E-value=24 Score=21.63 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=22.6
Q ss_pred eeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceeee
Q 035291 22 GICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLKS 66 (68)
Q Consensus 22 g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~~ 66 (68)
-.||.|++-- .++.+.-..+.|..||..|..
T Consensus 33 VkCp~C~n~q--------------~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCAQCQNIQ--------------MIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp EECSSSCCEE--------------EEETTCSSCEECSSSCCEEEE
T ss_pred eECCCCCCee--------------EEEecCccEEEccCCCCEEee
Confidence 4688888755 244567788889999988753
No 110
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.81 E-value=12 Score=17.78 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=9.7
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em8_A 10 EKPYKCVECGKGYK 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECcccCchhC
Confidence 45678888887653
No 111
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.78 E-value=12 Score=17.73 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=9.7
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em2_A 10 EKPFKCKECGKAFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCEECCcCCchhC
Confidence 45678888887653
No 112
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.62 E-value=12 Score=17.63 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=9.5
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ep3_A 10 EKPYRCAECGKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 45677888877653
No 113
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.60 E-value=12 Score=17.45 Aligned_cols=14 Identities=21% Similarity=0.595 Sum_probs=9.7
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (44)
T 2eox_A 10 SKSYNCNECGKAFT 23 (44)
T ss_dssp CCCEEETTTTEEES
T ss_pred CCCeECcccCcccC
Confidence 35678888887653
No 114
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.46 E-value=12 Score=17.54 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=9.3
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emm_A 10 ERPHKCNECGKSFI 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCCCCChhhC
Confidence 45577888877653
No 115
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.30 E-value=11 Score=17.78 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=9.4
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2ytg_A 10 EKPFKCGECGKSYN 23 (46)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCeECCCCCcccC
Confidence 45677888877653
No 116
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=34.29 E-value=6.8 Score=23.19 Aligned_cols=25 Identities=32% Similarity=0.862 Sum_probs=15.6
Q ss_pred eCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccc
Q 035291 23 ICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGA 62 (68)
Q Consensus 23 ~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r 62 (68)
.|.+|||.+.- ..+|....|..|.+
T Consensus 35 ~CaRCGg~v~l---------------r~~k~~WvC~lC~k 59 (62)
T 2a20_A 35 FCARCGGRVSL---------------RSNKVMWVCNLCRK 59 (62)
T ss_dssp ECTTSEEEEES---------------STTCEEEEEHHHHH
T ss_pred eecccCCEeee---------------cCCeEEEEehhhhh
Confidence 57788887732 33556666666654
No 117
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.29 E-value=12 Score=17.27 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=8.9
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2en2_A 9 EKPYKCETCGARFV 22 (42)
T ss_dssp SCSEECTTTCCEES
T ss_pred CCCEeCCCcChhhC
Confidence 34577777776643
No 118
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=34.28 E-value=14 Score=18.16 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=10.1
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|.+|++...
T Consensus 5 ~kp~~C~~C~k~F~ 18 (48)
T 3iuf_A 5 DKPYACDICGKRYK 18 (48)
T ss_dssp TSCEECTTTCCEES
T ss_pred CcCEECCCcCcccC
Confidence 35688888887653
No 119
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=34.25 E-value=13 Score=17.52 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=9.4
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2el4_A 10 VKPYGCSQCAKTFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCceECCCCCchhC
Confidence 45577888877653
No 120
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=34.17 E-value=13 Score=17.65 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=9.8
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2el6_A 10 VNPYKCSQCEKSFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCeECCCCCcccC
Confidence 45678888887653
No 121
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.15 E-value=13 Score=17.59 Aligned_cols=14 Identities=21% Similarity=0.669 Sum_probs=9.5
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ep2_A 10 EKPYECSICGKSFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCcCCCCCCcccC
Confidence 45677888877653
No 122
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=34.09 E-value=31 Score=22.72 Aligned_cols=12 Identities=42% Similarity=0.683 Sum_probs=6.2
Q ss_pred CceeCCCCCCce
Q 035291 20 AAGICSRCGGGA 31 (68)
Q Consensus 20 a~g~Cp~CGg~v 31 (68)
..-.|++||--.
T Consensus 137 ~~~~C~~CG~i~ 148 (170)
T 3pwf_A 137 KVYICPICGYTA 148 (170)
T ss_dssp CEEECTTTCCEE
T ss_pred CeeEeCCCCCee
Confidence 344566666533
No 123
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.08 E-value=9.1 Score=17.10 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=9.6
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (37)
T 2elo_A 7 GRSYSCPVCEKSFS 20 (37)
T ss_dssp CCCCEETTTTEECS
T ss_pred CCCcCCCCCCCccC
Confidence 35578888887653
No 124
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.06 E-value=12 Score=17.62 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=9.4
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ene_A 10 EKPYKCNECGKVFR 23 (46)
T ss_dssp SSSEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 45677888877643
No 125
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.84 E-value=15 Score=17.42 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=9.3
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emf_A 10 GKHFECTECGKAFT 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 35577888877653
No 126
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.84 E-value=12 Score=17.75 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=9.6
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eoz_A 10 EKPYSCNVCGKAFV 23 (46)
T ss_dssp CCSEEETTTTEEES
T ss_pred CCCeECcccChhhC
Confidence 45678888887653
No 127
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=33.82 E-value=14 Score=19.12 Aligned_cols=16 Identities=31% Similarity=0.440 Sum_probs=12.2
Q ss_pred eeeEEeecccceeeee
Q 035291 52 WRAIICTFCGAVLKSY 67 (68)
Q Consensus 52 kr~~~Ct~C~r~L~~~ 67 (68)
..-|.|++|-+.|.+.
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 4568999998888653
No 128
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=33.70 E-value=19 Score=21.44 Aligned_cols=13 Identities=38% Similarity=0.846 Sum_probs=10.2
Q ss_pred CceeCCCCCCcee
Q 035291 20 AAGICSRCGGGAS 32 (68)
Q Consensus 20 a~g~Cp~CGg~v~ 32 (68)
..+.||-||..+.
T Consensus 46 ~g~~CPvCgs~l~ 58 (112)
T 1l8d_A 46 AKGKCPVCGRELT 58 (112)
T ss_dssp CSEECTTTCCEEC
T ss_pred CCCCCCCCCCcCC
Confidence 3678999998763
No 129
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.46 E-value=12 Score=17.63 Aligned_cols=14 Identities=43% Similarity=0.904 Sum_probs=9.2
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emh_A 10 ERPYICTVCGKAFT 23 (46)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCcCCCCCCchhC
Confidence 35577777777653
No 130
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=33.35 E-value=8.6 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=11.0
Q ss_pred eeeeccCceeCCCCCCce
Q 035291 14 VHKCKPAAGICSRCGGGA 31 (68)
Q Consensus 14 v~g~~~a~g~Cp~CGg~v 31 (68)
|+..++..-.||.|+|.=
T Consensus 2 ~~~~qq~~~~C~~C~GsG 19 (53)
T 3lcz_A 2 VIATDDLETTCPNCNGSG 19 (53)
T ss_dssp CSCHHHHEEECTTTTTSC
T ss_pred eeecCceeccCcCCcccc
Confidence 344555666777776654
No 131
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.34 E-value=13 Score=17.62 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=9.3
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em4_A 10 QRPYECIECGKAFK 23 (46)
T ss_dssp SSSEECSSSCCEES
T ss_pred CcCcCCCCCCCccC
Confidence 35577888877653
No 132
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.32 E-value=14 Score=16.90 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=9.1
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (41)
T 2ept_A 8 QRVYECQECGKSFR 21 (41)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCCcC
Confidence 35577888877643
No 133
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.22 E-value=13 Score=17.48 Aligned_cols=14 Identities=21% Similarity=0.544 Sum_probs=9.5
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2en3_A 10 EKPFQCKECGMNFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCcccChhhC
Confidence 45577888887653
No 134
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=33.19 E-value=13 Score=17.41 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=9.3
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em9_A 10 EKPYNCKECGKSFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCccccccC
Confidence 45677888877643
No 135
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.98 E-value=10 Score=21.00 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=9.9
Q ss_pred eCCCCCCceeEE
Q 035291 23 ICSRCGGGASVA 34 (68)
Q Consensus 23 ~Cp~CGg~v~a~ 34 (68)
.|+.||..+.+.
T Consensus 17 ~C~~C~~~I~~~ 28 (81)
T 1v6g_A 17 RCFSCDQFIEGE 28 (81)
T ss_dssp BCTTTCCBCCSC
T ss_pred cCccccCEeccc
Confidence 799999998643
No 136
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=32.84 E-value=14 Score=21.28 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=9.3
Q ss_pred CceeCCCCCCce
Q 035291 20 AAGICSRCGGGA 31 (68)
Q Consensus 20 a~g~Cp~CGg~v 31 (68)
.--+||+||+..
T Consensus 17 Lk~~CP~CG~~T 28 (60)
T 2apo_B 17 LKEICPKCGEKT 28 (60)
T ss_dssp SSSBCSSSCSBC
T ss_pred ccccCcCCCCcC
Confidence 356799999875
No 137
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.70 E-value=13 Score=17.55 Aligned_cols=14 Identities=29% Similarity=0.807 Sum_probs=10.1
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (45)
T 2epu_A 10 QKPFECTHCGKSFR 23 (45)
T ss_dssp CCSEEETTTTEEES
T ss_pred CcCccCCCCCCccC
Confidence 45688888887653
No 138
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.66 E-value=14 Score=17.43 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=9.3
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2yso_A 10 EKSHQCRECGEIFF 23 (46)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCEEccccChhhC
Confidence 35577888877653
No 139
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=32.62 E-value=16 Score=22.32 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=9.8
Q ss_pred cCceeCCCCCCce
Q 035291 19 PAAGICSRCGGGA 31 (68)
Q Consensus 19 ~a~g~Cp~CGg~v 31 (68)
+-+..|||||-.-
T Consensus 51 ~g~~~CpYCg~~f 63 (80)
T 2jvm_A 51 TGFVECGYCDRRY 63 (80)
T ss_dssp TCEEECSSSSCEE
T ss_pred CCeEECCCCCCEE
Confidence 4567899999754
No 140
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=32.56 E-value=11 Score=21.07 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=18.6
Q ss_pred eeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 22 GICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 22 g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
-.||.||+.-...|- ....++|+.||..|.
T Consensus 12 ~~Cp~C~~~~lv~D~--------------~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAILVEDY--------------RAGDMICPECGLVVG 41 (58)
T ss_dssp CSBTTBSSSCCEECS--------------SSCCEECTTTCCEEC
T ss_pred ccCcCCCCCceeEeC--------------CCCeEEeCCCCCEEe
Confidence 369999984323332 234677888887664
No 141
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.52 E-value=14 Score=17.47 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=9.5
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yu8_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp CSSEECSSSCCEES
T ss_pred CCCeECCcCCchhC
Confidence 45677888887653
No 142
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.50 E-value=16 Score=20.15 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=21.7
Q ss_pred CceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 20 AAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 20 a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
....|+.||..+...-|+. ..--|=|- =|.|+.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a-~~~~~H~~------CF~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILRA-MGKAYHPG------CFTCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCCSCCEEE-TTEEECTT------TCBCSSSCCBCT
T ss_pred CCCccccCCCeecceeEEE-CCccccHH------hcCcccCCCccC
Confidence 4568999999985332221 11111122 245888887774
No 143
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.44 E-value=14 Score=17.40 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=9.1
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2em3_A 10 EKPYECKVCSKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCcccC
Confidence 45577777777643
No 144
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=32.41 E-value=15 Score=17.28 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=9.4
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ema_A 10 EKRYKCNECGKVFS 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CcCcCCCCCcchhC
Confidence 45677888877643
No 145
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.37 E-value=14 Score=17.45 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=10.0
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ysp_A 10 EKPYKCEKCGKGYN 23 (46)
T ss_dssp CCSEEETTTTEEES
T ss_pred CCCeECCCCCCccC
Confidence 45688888887654
No 146
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=32.31 E-value=15 Score=21.61 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=9.7
Q ss_pred cCceeCCCCCCce
Q 035291 19 PAAGICSRCGGGA 31 (68)
Q Consensus 19 ~a~g~Cp~CGg~v 31 (68)
+-+..|||||-.-
T Consensus 38 ~g~~~CpYCg~~f 50 (67)
T 2jrr_A 38 TGWVECPYCDCKY 50 (67)
T ss_dssp TSEEEETTTTEEE
T ss_pred CCeEECCCCCCEE
Confidence 4567899999654
No 147
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.14 E-value=11 Score=22.48 Aligned_cols=37 Identities=19% Similarity=0.427 Sum_probs=22.8
Q ss_pred ceeCCCCCCceeEEEeeeeeEEEEEeeeecee--eeEEeecccceee
Q 035291 21 AGICSRCGGGASVADMKTATRFCHVPFYWKSW--RAIICTFCGAVLK 65 (68)
Q Consensus 21 ~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~k--r~~~Ct~C~r~L~ 65 (68)
...|+.||..+....+-+ .--+.| .=|.|+.|++.|.
T Consensus 3 ~~~C~~C~~~I~~~~~~~--------a~~~~wH~~CF~C~~C~~~L~ 41 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLK--------AIDQYWHEDCLSCDLCGCRLG 41 (114)
T ss_dssp CBCBSSSCSCBCSSEEEE--------CSSSEECTTTCCCSSSCSCCC
T ss_pred CCCCcCCCCeeCCcEEEE--------ECchhHHHhcCcccccCCchh
Confidence 457999999986442111 112222 3467999999885
No 148
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=31.94 E-value=18 Score=18.20 Aligned_cols=12 Identities=25% Similarity=0.669 Sum_probs=6.3
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|+.|++..
T Consensus 39 ~~~~C~~C~k~f 50 (66)
T 2drp_A 39 KVYPCPFCFKEF 50 (66)
T ss_dssp CCEECTTTCCEE
T ss_pred cCeECCCCCCcc
Confidence 345555555543
No 149
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.91 E-value=5.8 Score=17.63 Aligned_cols=13 Identities=23% Similarity=0.795 Sum_probs=7.8
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 7 ~~~~~C~~C~k~f 19 (36)
T 2elr_A 7 GKTHLCDMCGKKF 19 (36)
T ss_dssp CSSCBCTTTCCBC
T ss_pred CCCeecCcCCCCc
Confidence 3456677776654
No 150
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=31.88 E-value=14 Score=17.84 Aligned_cols=15 Identities=20% Similarity=0.946 Sum_probs=10.2
Q ss_pred eeeeEEeecccceee
Q 035291 51 SWRAIICTFCGAVLK 65 (68)
Q Consensus 51 ~kr~~~Ct~C~r~L~ 65 (68)
..+.|.|..|++.+.
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (48)
T 2epr_A 9 TRKQVACEICGKIFR 23 (48)
T ss_dssp CCCSEEETTTTEEES
T ss_pred CCcCeeCCCCCcccC
Confidence 456677888877653
No 151
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=31.77 E-value=12 Score=22.39 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=7.3
Q ss_pred eeCCCCCCcee
Q 035291 22 GICSRCGGGAS 32 (68)
Q Consensus 22 g~Cp~CGg~v~ 32 (68)
..|+.||..+.
T Consensus 4 ~~C~~C~~~I~ 14 (126)
T 2xqn_T 4 PRCAGCDELIF 14 (126)
T ss_dssp CBBTTTSSBCC
T ss_pred CCCccCCCEeC
Confidence 46777777664
No 152
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.61 E-value=15 Score=17.33 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=9.8
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2en6_A 10 EKPYGCNECGKTFS 23 (46)
T ss_dssp SCCEEETTTTEEES
T ss_pred CcCeECCCCCcccC
Confidence 45678888887653
No 153
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.59 E-value=15 Score=17.33 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=9.4
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytd_A 10 EKPYKCSECGKAFH 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCCeeC
Confidence 45677888877643
No 154
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=31.53 E-value=15 Score=24.69 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=10.8
Q ss_pred cCceeCCCCCCce
Q 035291 19 PAAGICSRCGGGA 31 (68)
Q Consensus 19 ~a~g~Cp~CGg~v 31 (68)
+|.+.||.|+|.+
T Consensus 76 Gal~~CP~C~G~l 88 (160)
T 2riq_A 76 GALLPCEECSGQL 88 (160)
T ss_dssp CEECCCTTTCCCE
T ss_pred CCCCCCCCCCCEE
Confidence 6788999999755
No 155
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.24 E-value=14 Score=17.41 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=9.8
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2en1_A 10 EKPFKCEECGKRFT 23 (46)
T ss_dssp CCSEEETTTTEEES
T ss_pred CCCeeCCCCCcccC
Confidence 45678888887653
No 156
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.99 E-value=15 Score=17.25 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=9.2
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2ytk_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp SCSEECSSSCCEES
T ss_pred CCCEeCCcCCCccC
Confidence 45577777777643
No 157
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.95 E-value=14 Score=17.37 Aligned_cols=14 Identities=21% Similarity=0.454 Sum_probs=9.3
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2en8_A 10 EKSHTCDECGKNFC 23 (46)
T ss_dssp CSSEECTTTCCEES
T ss_pred CCCeECCCcCcccC
Confidence 45577888877653
No 158
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=30.54 E-value=12 Score=24.25 Aligned_cols=37 Identities=24% Similarity=0.557 Sum_probs=20.7
Q ss_pred eeCCCCCCceeEEE--eeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 22 GICSRCGGGASVAD--MKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 22 g~Cp~CGg~v~a~d--v~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
+.|+.|+..+.+.+ |+. ..--|=| .=|.|+.|++.|.
T Consensus 70 ~~C~~C~~~I~~~e~~i~a-~~~~~H~------~CF~C~~C~~~L~ 108 (188)
T 1rut_X 70 GACSACGQSIPASELVMRA-QGNVYHL------KCFTCSTCRNRLV 108 (188)
T ss_dssp EECTTTCCEECTTSEEEEE-TTEEECG------GGCBCTTTCCBCC
T ss_pred CccccCCCccccCcEEEEc-CCCEEeC------CCCeECCCCCCCC
Confidence 47999999986432 222 1111112 2345777777773
No 159
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.41 E-value=12 Score=20.58 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=21.6
Q ss_pred eeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 22 GICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 22 g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
..|+.||..+.+..|+. ..--|=| .=|.|+.|++.|.
T Consensus 16 ~~C~~C~~~I~~~~v~a-~~~~~H~------~CF~C~~C~~~L~ 52 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSA-MDTVWHP------ECFVCGDCFTSFS 52 (80)
T ss_dssp CBCTTTCCBCCSSCEEE-TTEEECT------TTCBCSSSCCBSC
T ss_pred CccccCCCeecceeEEE-CCCeEec------CcCChhhCCCCCC
Confidence 58999999986532221 1111112 2356888888885
No 160
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.31 E-value=7.9 Score=21.75 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=24.3
Q ss_pred eeeccCceeCCCCCCceeEEEeeeeeEEEEEeeeecee--eeEEeecccceee
Q 035291 15 HKCKPAAGICSRCGGGASVADMKTATRFCHVPFYWKSW--RAIICTFCGAVLK 65 (68)
Q Consensus 15 ~g~~~a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~k--r~~~Ct~C~r~L~ 65 (68)
.........|+.||..+...-|+. --+.| .=|.|+.|++.|.
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~~v~a---------~~~~~H~~CF~C~~C~~~L~ 52 (79)
T 2cor_A 9 KARGLGKYICQKCHAIIDEQPLIF---------KNDPYHPDHFNCANCGKELT 52 (79)
T ss_dssp CCCCCCCCBCTTTCCBCCSCCCCC---------SSSCCCTTTSBCSSSCCBCC
T ss_pred hhhccCCCCCccCCCEecceEEEE---------CcceeCCCCCEeCCCCCccC
Confidence 334455678999999986322221 01111 2256888887774
No 161
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.00 E-value=9.4 Score=17.82 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=9.2
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2eoj_A 10 ENPYECCECGKVFS 23 (44)
T ss_dssp CCSCEETTTTEECS
T ss_pred CcCeeCCCCCCccC
Confidence 34577888877643
No 162
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=29.89 E-value=8.2 Score=15.81 Aligned_cols=10 Identities=20% Similarity=0.690 Sum_probs=5.8
Q ss_pred EEeeccccee
Q 035291 55 IICTFCGAVL 64 (68)
Q Consensus 55 ~~Ct~C~r~L 64 (68)
|.|..|++..
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 3466666654
No 163
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=29.75 E-value=6.3 Score=16.59 Aligned_cols=9 Identities=22% Similarity=0.825 Sum_probs=4.9
Q ss_pred EEeecccce
Q 035291 55 IICTFCGAV 63 (68)
Q Consensus 55 ~~Ct~C~r~ 63 (68)
|.|..|++.
T Consensus 3 ~~C~~C~k~ 11 (30)
T 1paa_A 3 YACGLCNRA 11 (30)
T ss_dssp SBCTTTCCB
T ss_pred cCCcccCcc
Confidence 445666554
No 164
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=29.72 E-value=19 Score=14.68 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=8.1
Q ss_pred eEEee--cccceee
Q 035291 54 AIICT--FCGAVLK 65 (68)
Q Consensus 54 ~~~Ct--~C~r~L~ 65 (68)
.|.|. .|++...
T Consensus 2 ~~~C~~~~C~k~f~ 15 (29)
T 2ab3_A 2 VYVCHFENCGRSFN 15 (29)
T ss_dssp CEEECSTTTCEEES
T ss_pred CCCCcCCcCcCccC
Confidence 46788 8877643
No 165
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.66 E-value=6.7 Score=21.21 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=9.9
Q ss_pred ceeCCCCCCceeE
Q 035291 21 AGICSRCGGGASV 33 (68)
Q Consensus 21 ~g~Cp~CGg~v~a 33 (68)
...|+.||..+..
T Consensus 5 ~~~C~~C~~~I~~ 17 (72)
T 1x61_A 5 SSGCGGCGEDVVG 17 (72)
T ss_dssp CCCCSSSCSCCCS
T ss_pred CCCCccCCCccCC
Confidence 4579999988854
No 166
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.62 E-value=14 Score=21.07 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=8.8
Q ss_pred ceeCCCCCCcee
Q 035291 21 AGICSRCGGGAS 32 (68)
Q Consensus 21 ~g~Cp~CGg~v~ 32 (68)
...|+.||..+.
T Consensus 5 ~~~C~~C~~~I~ 16 (101)
T 2cup_A 5 SSGCVECRKPIG 16 (101)
T ss_dssp CCBCSSSCCBCC
T ss_pred CCcCcccCCccc
Confidence 357888888874
No 167
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=29.56 E-value=27 Score=21.94 Aligned_cols=9 Identities=56% Similarity=1.486 Sum_probs=5.5
Q ss_pred eCCCCCCce
Q 035291 23 ICSRCGGGA 31 (68)
Q Consensus 23 ~Cp~CGg~v 31 (68)
-||+||...
T Consensus 5 ~C~~CG~~~ 13 (189)
T 3cng_A 5 FCSQCGGEV 13 (189)
T ss_dssp BCTTTCCBC
T ss_pred cCchhCCcc
Confidence 366666665
No 168
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.47 E-value=14 Score=19.80 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=19.8
Q ss_pred eeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 22 GICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 22 g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
..|+.||..+.+.-|+. .---|=| .=|.|+.|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~~a-~~~~~H~------~CF~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKA-MNNSWHP------ECFRCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCCSCCEEE-TTEEECT------TTSBCSSSCCBCS
T ss_pred CcCccCCCEecceEEEE-Ccccccc------cCCEeCCCCCcCC
Confidence 47999999885322211 1101112 2255888887775
No 169
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.41 E-value=17 Score=17.09 Aligned_cols=14 Identities=14% Similarity=0.498 Sum_probs=9.7
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2ep0_A 10 EKPYKCDVCHKSFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCcccCcccC
Confidence 45678888887653
No 170
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=29.32 E-value=7.2 Score=24.80 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=9.1
Q ss_pred eeccCceeCCCCCCceeE
Q 035291 16 KCKPAAGICSRCGGGASV 33 (68)
Q Consensus 16 g~~~a~g~Cp~CGg~v~a 33 (68)
|+.+-...|..||..+..
T Consensus 1 ~~~~~~~~C~~C~~~I~~ 18 (169)
T 2rgt_A 1 GSTPEIPMCAGCDQHILD 18 (169)
T ss_dssp ------CBBSSSSSBCCS
T ss_pred CCCCCCCccccCCCccCC
Confidence 445556788888887753
No 171
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=28.79 E-value=37 Score=22.09 Aligned_cols=18 Identities=39% Similarity=0.754 Sum_probs=14.9
Q ss_pred ceeCCCCCCceeEEEeee
Q 035291 21 AGICSRCGGGASVADMKT 38 (68)
Q Consensus 21 ~g~Cp~CGg~v~a~dv~s 38 (68)
-..||+||.--++.-||+
T Consensus 52 hakcprcgaegsvsivet 69 (131)
T 2x5c_A 52 HAKCPRCGAEGSVSIVET 69 (131)
T ss_dssp EEECTTTSCEEEEEEEEC
T ss_pred eccCCCCCCccceEEEEe
Confidence 357999999888888887
No 172
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.76 E-value=7.1 Score=21.03 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=9.9
Q ss_pred ceeCCCCCCceeE
Q 035291 21 AGICSRCGGGASV 33 (68)
Q Consensus 21 ~g~Cp~CGg~v~a 33 (68)
...|+.||..+..
T Consensus 5 ~~~C~~C~~~I~~ 17 (72)
T 1wyh_A 5 SSGCSACGETVMP 17 (72)
T ss_dssp CCBCSSSCCBCCS
T ss_pred CCCCccCCCcccc
Confidence 4578999988863
No 173
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=28.37 E-value=14 Score=22.76 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=22.1
Q ss_pred ceeCCCCCCceeEEE-eeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 21 AGICSRCGGGASVAD-MKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 21 ~g~Cp~CGg~v~a~d-v~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
+..|+.||..+.... ++. ..--|=| .=|.|+.|++.|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a-~~~~wH~------~CF~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA-MDSYWHS------RCLKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE-TTEEEET------TTSBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe-CCcEEcc------cccCcCcCCCccc
Confidence 458999999885332 111 0001112 3356999999884
No 174
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.34 E-value=12 Score=20.61 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=21.3
Q ss_pred ceeCCCCCCceeEEE--eeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 21 AGICSRCGGGASVAD--MKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 21 ~g~Cp~CGg~v~a~d--v~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
...|+.||..+.+.| |+..-+ -|=| .=|.|+.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~-~~H~------~CF~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGT-VWHK------DCFTCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSC-EEET------TTCCCSSSCCCCT
T ss_pred CCcCccCCcccccCceEEEECcc-cccc------ccCchhhCCCccC
Confidence 458999999986433 322100 1112 2345788887774
No 175
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=28.11 E-value=18 Score=17.87 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=8.9
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 22 ~k~~~C~~C~k~f~ 35 (54)
T 1yui_A 22 EQPATCPICYAVIR 35 (54)
T ss_dssp SCCEECTTTCCEES
T ss_pred CCCccCCCCCcccC
Confidence 34577777777643
No 176
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=27.35 E-value=18 Score=22.10 Aligned_cols=8 Identities=38% Similarity=1.041 Sum_probs=6.8
Q ss_pred eCCCCCCc
Q 035291 23 ICSRCGGG 30 (68)
Q Consensus 23 ~Cp~CGg~ 30 (68)
.|||||.-
T Consensus 37 ~CPnCgs~ 44 (81)
T 3p8b_A 37 RCPVCGSR 44 (81)
T ss_dssp SCTTTCCC
T ss_pred CCCCCCCC
Confidence 59999984
No 177
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=27.29 E-value=20 Score=21.28 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=7.4
Q ss_pred ceeCCCCCCc
Q 035291 21 AGICSRCGGG 30 (68)
Q Consensus 21 ~g~Cp~CGg~ 30 (68)
.-.|||||..
T Consensus 23 ~~~CPnC~s~ 32 (69)
T 1ryq_A 23 EDRCPVCGSR 32 (69)
T ss_dssp SSSCTTTCCC
T ss_pred CCcCCCccCC
Confidence 3479999954
No 178
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.28 E-value=9.9 Score=17.62 Aligned_cols=12 Identities=25% Similarity=0.855 Sum_probs=7.6
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 10 k~~~C~~C~k~f 21 (42)
T 2eos_A 10 KPYPCEICGTRF 21 (42)
T ss_dssp CCBCCSSSCCCB
T ss_pred CCEECCCCCCcc
Confidence 456677777654
No 179
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.21 E-value=29 Score=17.39 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=9.9
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 16 ~~~~~C~~C~k~f~ 29 (73)
T 2ctu_A 16 DRSQKCSKCGIIFI 29 (73)
T ss_dssp CSEEECSSSCCEEE
T ss_pred CCCeeCCcccchhC
Confidence 45678888887664
No 180
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.96 E-value=24 Score=19.24 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=9.2
Q ss_pred ceeCCCCCCcee
Q 035291 21 AGICSRCGGGAS 32 (68)
Q Consensus 21 ~g~Cp~CGg~v~ 32 (68)
...|+.||..+.
T Consensus 5 ~~~C~~C~~~I~ 16 (76)
T 1x68_A 5 SSGCVACSKPIS 16 (76)
T ss_dssp CCCCTTTCCCCC
T ss_pred CCCCccCCCccc
Confidence 457888888875
No 181
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.93 E-value=30 Score=20.98 Aligned_cols=9 Identities=22% Similarity=0.781 Sum_probs=4.6
Q ss_pred eCCCCCCce
Q 035291 23 ICSRCGGGA 31 (68)
Q Consensus 23 ~Cp~CGg~v 31 (68)
-||.||..+
T Consensus 33 fCPeCgq~L 41 (81)
T 2jrp_A 33 LCPDCRQPL 41 (81)
T ss_dssp ECSSSCSCC
T ss_pred cCcchhhHH
Confidence 455555554
No 182
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=26.91 E-value=20 Score=20.42 Aligned_cols=7 Identities=43% Similarity=1.141 Sum_probs=6.3
Q ss_pred eCCCCCC
Q 035291 23 ICSRCGG 29 (68)
Q Consensus 23 ~Cp~CGg 29 (68)
.|||||.
T Consensus 15 ~CpnC~~ 21 (59)
T 3lpe_B 15 ICPICHS 21 (59)
T ss_dssp BCTTTCC
T ss_pred CCCCCCC
Confidence 5999997
No 183
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.80 E-value=31 Score=17.61 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=5.3
Q ss_pred eeEEeecccce
Q 035291 53 RAIICTFCGAV 63 (68)
Q Consensus 53 r~~~Ct~C~r~ 63 (68)
+.|.|..|++.
T Consensus 9 ~~~~C~~C~k~ 19 (66)
T 2eod_A 9 RTQPCTYCTKE 19 (66)
T ss_dssp CEEECSSSCCE
T ss_pred CCeeccccCCc
Confidence 34455555543
No 184
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=26.67 E-value=22 Score=17.29 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=10.7
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 30 ~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 30 EKPYKCEFCEYAAA 43 (57)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCcCCCCCcchhC
Confidence 45688999998754
No 185
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=26.65 E-value=23 Score=17.11 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=10.6
Q ss_pred ceeCCCCCCceeEE
Q 035291 21 AGICSRCGGGASVA 34 (68)
Q Consensus 21 ~g~Cp~CGg~v~a~ 34 (68)
+..|+.||..|-++
T Consensus 3 ~~~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 3 NPNCARCGKIVYPT 16 (31)
T ss_dssp CCBCSSSCSBCCGG
T ss_pred CCcCCccCCEEecc
Confidence 45799999988544
No 186
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=26.27 E-value=11 Score=16.88 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=7.0
Q ss_pred eEEeeccccee
Q 035291 54 AIICTFCGAVL 64 (68)
Q Consensus 54 ~~~Ct~C~r~L 64 (68)
.|.|..|++..
T Consensus 2 p~~C~~C~k~F 12 (33)
T 1rim_A 2 KFACPECPKRF 12 (33)
T ss_dssp CCCCSSSCCCC
T ss_pred cccCCCCCchh
Confidence 35677777654
No 187
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=26.06 E-value=15 Score=21.40 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=10.9
Q ss_pred CceeCCCCCCceeE
Q 035291 20 AAGICSRCGGGASV 33 (68)
Q Consensus 20 a~g~Cp~CGg~v~a 33 (68)
..|+||||=+...+
T Consensus 27 p~gqCPYC~~~~e~ 40 (57)
T 2k9h_A 27 INGQCPYCMTITEA 40 (57)
T ss_dssp TTTBCTTTCCBCCS
T ss_pred CCCCCCcccCcCCc
Confidence 46899999887644
No 188
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=25.94 E-value=40 Score=23.33 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=6.5
Q ss_pred eeCCCCCCce
Q 035291 22 GICSRCGGGA 31 (68)
Q Consensus 22 g~Cp~CGg~v 31 (68)
--||.||...
T Consensus 108 ~fC~~CG~~~ 117 (269)
T 1vk6_A 108 KYCGYCGHEM 117 (269)
T ss_dssp SBCTTTCCBE
T ss_pred CccccCCCcC
Confidence 3577777666
No 189
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=25.86 E-value=21 Score=29.60 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=9.0
Q ss_pred eeCCCCCCcee
Q 035291 22 GICSRCGGGAS 32 (68)
Q Consensus 22 g~Cp~CGg~v~ 32 (68)
+.||||||..+
T Consensus 9 ~~C~~Cg~~~~ 19 (1104)
T 4ddu_A 9 HSCINCGGLNT 19 (1104)
T ss_dssp TCCTTTSSCEE
T ss_pred hcCCCCcCcCc
Confidence 58999999763
No 190
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=25.74 E-value=9.1 Score=17.10 Aligned_cols=10 Identities=20% Similarity=0.551 Sum_probs=5.2
Q ss_pred eEEeecccce
Q 035291 54 AIICTFCGAV 63 (68)
Q Consensus 54 ~~~Ct~C~r~ 63 (68)
.|.|..|++.
T Consensus 11 ~~~C~~C~k~ 20 (37)
T 1p7a_A 11 PFQCPDCDRS 20 (37)
T ss_dssp SBCCTTTCCC
T ss_pred CccCCCCCcc
Confidence 3455555554
No 191
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.57 E-value=9.2 Score=17.60 Aligned_cols=12 Identities=17% Similarity=0.587 Sum_probs=7.1
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 9 k~~~C~~C~k~f 20 (42)
T 2yte_A 9 KPYSCAECKETF 20 (42)
T ss_dssp CSCBCTTTCCBC
T ss_pred CCeECCCCCCcc
Confidence 446666666653
No 192
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=25.51 E-value=22 Score=22.75 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=12.5
Q ss_pred ccCceeCCCCCCceeEE
Q 035291 18 KPAAGICSRCGGGASVA 34 (68)
Q Consensus 18 ~~a~g~Cp~CGg~v~a~ 34 (68)
++....|..||..+...
T Consensus 57 ~~~~~~C~~C~~~I~~~ 73 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDR 73 (182)
T ss_dssp CCSCCBCBTSSSBCCCS
T ss_pred CCCCCcCccCCCCccCc
Confidence 44457899999988643
No 193
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.29 E-value=11 Score=20.85 Aligned_cols=41 Identities=29% Similarity=0.516 Sum_probs=22.9
Q ss_pred ccCceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 18 KPAAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 18 ~~a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
.+....|+.|+..+.+.-|+. ..--|-|-+ |.|+.|++.|.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~a-~~~~~H~~C------F~C~~C~~~L~ 52 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGVFVKL-RDRHRHPEC------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCCSSSCCCCCSSCEEC-SSCEECTTT------TSCSSSCCCHH
T ss_pred CCCCCccccCCCCccCcEEEE-CcceeCcCc------CeeCCCCCCCC
Confidence 344568999999986432221 111111222 45888887774
No 194
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.10 E-value=10 Score=22.88 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=9.9
Q ss_pred ceeCCCCCCceeEE
Q 035291 21 AGICSRCGGGASVA 34 (68)
Q Consensus 21 ~g~Cp~CGg~v~a~ 34 (68)
+..|+.||..+...
T Consensus 5 ~~~C~~C~~~I~~~ 18 (122)
T 1m3v_A 5 WKRCAGCGGKIADR 18 (122)
T ss_dssp CCCBSSSSSCCCSS
T ss_pred CCCCcccCCEeCCc
Confidence 45788888877544
No 195
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.08 E-value=10 Score=17.94 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=7.9
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2enf_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp CCSCBCSSSCCBC
T ss_pred CcCeECCCCCccc
Confidence 3456677777654
No 196
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.01 E-value=15 Score=20.84 Aligned_cols=39 Identities=28% Similarity=0.596 Sum_probs=21.9
Q ss_pred CceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 20 AAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 20 a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
....|..|+..+...-|+. ..--|=| .=|.|+.|++.|.
T Consensus 24 ~~~~C~~C~~~I~~~~~~a-~~~~~H~------~CF~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKA-RDKYRHP------ECFVCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCSCCEES-SSCEECT------TTCCCSSSCCCTT
T ss_pred cCCCcccCCCEecccEEEE-CCceECc------cCCEecCCCCCCC
Confidence 4467999999986422221 0001112 2255888888775
No 197
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=24.79 E-value=31 Score=20.92 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=10.9
Q ss_pred eeeeEEeecccceee
Q 035291 51 SWRAIICTFCGAVLK 65 (68)
Q Consensus 51 ~kr~~~Ct~C~r~L~ 65 (68)
+.+.|.|.+|++...
T Consensus 19 Gek~y~C~~C~k~F~ 33 (133)
T 2lt7_A 19 GRVYYICIVCKRSYV 33 (133)
T ss_dssp TEEEEEETTTCCEES
T ss_pred CCcCeECCCCCCCcC
Confidence 466788888887654
No 198
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=24.74 E-value=11 Score=17.90 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=7.9
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ely_A 10 EKPFKCVECGKGF 22 (46)
T ss_dssp CCSBCCSSSCCCB
T ss_pred CCCcccCccCccc
Confidence 3456677777654
No 199
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.52 E-value=11 Score=17.79 Aligned_cols=12 Identities=25% Similarity=0.761 Sum_probs=7.1
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 11 ~~~~C~~C~k~f 22 (46)
T 2eov_A 11 KPYKCSDCGKSF 22 (46)
T ss_dssp CSCBCSSSCCBC
T ss_pred CCccCCccChhh
Confidence 446666666654
No 200
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.24 E-value=11 Score=17.96 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=8.4
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eon_A 10 EKPYKCQVCGKAF 22 (46)
T ss_dssp CCSCBCSSSCCBC
T ss_pred CcccCCCCCCccc
Confidence 3456777777654
No 201
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=24.13 E-value=25 Score=18.07 Aligned_cols=14 Identities=14% Similarity=0.453 Sum_probs=10.8
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 47 ~~~~~C~~C~~~f~ 60 (73)
T 1f2i_G 47 QKPFQCRICMRNFS 60 (73)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCeECCCCCchhC
Confidence 45689999998754
No 202
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.00 E-value=29 Score=18.44 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=21.0
Q ss_pred ceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 21 AGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 21 ~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
...|+.|+..+.+..|+..=+ -|=| .=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~-~~H~------~CF~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQ-PWHK------ECFVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSS-EEET------TTSBCSSSCCBCT
T ss_pred CCCCcccCCeeccceEEECcc-ccCC------CCCccCCCCCcCC
Confidence 457999999886443322100 0112 2245888887774
No 203
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=23.93 E-value=26 Score=16.96 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=10.2
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|+.|++...
T Consensus 27 ~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 27 VRPYHCTYCNFSFK 40 (57)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCccCCCCCchhc
Confidence 45688888887654
No 204
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=23.66 E-value=32 Score=19.19 Aligned_cols=13 Identities=8% Similarity=0.110 Sum_probs=10.7
Q ss_pred cCceeCCCCCCce
Q 035291 19 PAAGICSRCGGGA 31 (68)
Q Consensus 19 ~a~g~Cp~CGg~v 31 (68)
+....||+||...
T Consensus 25 p~l~~c~~cGe~~ 37 (56)
T 3r8s_0 25 TSLSVDKTSGEKH 37 (56)
T ss_dssp CCEEECTTTCCEE
T ss_pred CceeECCCCCCee
Confidence 5678999999865
No 205
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.50 E-value=13 Score=17.51 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=8.3
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq3_A 10 EKPYECNQCGKAF 22 (46)
T ss_dssp CCSSEETTTTEEC
T ss_pred CCCeECCCCChhh
Confidence 3456777777654
No 206
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=23.33 E-value=20 Score=19.86 Aligned_cols=9 Identities=44% Similarity=1.434 Sum_probs=6.2
Q ss_pred EEeecccce
Q 035291 55 IICTFCGAV 63 (68)
Q Consensus 55 ~~Ct~C~r~ 63 (68)
..||+|||.
T Consensus 12 ~~CSFCGk~ 20 (51)
T 2ds5_A 12 LYCSFCGKS 20 (51)
T ss_dssp CBCTTTCCB
T ss_pred cEecCCCCC
Confidence 358888864
No 207
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.20 E-value=24 Score=18.42 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=7.9
Q ss_pred eeEEeecccceee
Q 035291 53 RAIICTFCGAVLK 65 (68)
Q Consensus 53 r~~~Ct~C~r~L~ 65 (68)
+.|.|.+|++...
T Consensus 14 k~~~C~~C~k~f~ 26 (77)
T 2ct1_A 14 KPYECYICHARFT 26 (77)
T ss_dssp CSEECTTTCCEES
T ss_pred CCeECCCcCchhC
Confidence 4566777766543
No 208
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=23.13 E-value=26 Score=21.38 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=8.6
Q ss_pred eeCCCCCCcee
Q 035291 22 GICSRCGGGAS 32 (68)
Q Consensus 22 g~Cp~CGg~v~ 32 (68)
-.||||++-.+
T Consensus 31 NiCPYC~nRls 41 (77)
T 2l7x_A 31 NICPYCASRLT 41 (77)
T ss_dssp TCCTTTCCCCC
T ss_pred ccChhhhccCC
Confidence 47999998763
No 209
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.67 E-value=12 Score=17.20 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=6.7
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 10 k~~~C~~C~k~f 21 (42)
T 2ytb_A 10 KPYRCDQCGKAF 21 (42)
T ss_dssp CSBCCTTTTCCB
T ss_pred CCeeCCCccchh
Confidence 345666666543
No 210
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.43 E-value=14 Score=17.35 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=9.3
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (45)
T 2epq_A 8 EKPYSCPVCGLRFK 21 (45)
T ss_dssp CCSSEETTTTEECS
T ss_pred CCCCcCCCCCcccC
Confidence 45677888877643
No 211
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=22.38 E-value=32 Score=21.11 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=21.9
Q ss_pred CceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 20 AAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 20 a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
.--.||.|++-- -++.+.-..+.|..|+..|.
T Consensus 33 m~VkCp~C~~~q--------------~VFSha~t~V~C~~Cg~~L~ 64 (82)
T 3u5c_b 33 LDVKCPGCLNIT--------------TVFSHAQTAVTCESCSTILC 64 (82)
T ss_dssp EEEECTTSCSCE--------------EEESBCSSCCCCSSSCCCCE
T ss_pred EEEECCCCCCee--------------EEEecCCeEEEccccCCEEe
Confidence 345688888765 23455667778888888775
No 212
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.32 E-value=33 Score=16.88 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=8.5
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (54)
T 2eps_A 10 GKPYICQSCGKGF 22 (54)
T ss_dssp SCCEECSSSCCEE
T ss_pred CCCeECCCCCccc
Confidence 3457777777765
No 213
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.32 E-value=12 Score=17.72 Aligned_cols=12 Identities=42% Similarity=1.049 Sum_probs=7.3
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2emg_A 11 NPFICSECGKVF 22 (46)
T ss_dssp CSCBCTTTCCBC
T ss_pred CCEECCccCccc
Confidence 446677776654
No 214
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=22.31 E-value=9.7 Score=19.21 Aligned_cols=8 Identities=38% Similarity=0.903 Sum_probs=5.6
Q ss_pred eeCCCCCC
Q 035291 22 GICSRCGG 29 (68)
Q Consensus 22 g~Cp~CGg 29 (68)
..|.+||.
T Consensus 22 ~~C~~Cg~ 29 (39)
T 2a51_A 22 EGCWNCGS 29 (39)
T ss_dssp SSCTTTCC
T ss_pred CccccCCC
Confidence 56777774
No 215
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.30 E-value=14 Score=17.38 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=8.6
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 10 ~~~~~C~~C~k~F 22 (46)
T 2eoe_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp CCSSEETTTTEEC
T ss_pred CCCeECCCcChhh
Confidence 4557777777654
No 216
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.24 E-value=14 Score=17.33 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=8.6
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (43)
T 2yrm_A 8 NGAFFCNECDCRFS 21 (43)
T ss_dssp SCCBCCSSSCCCBS
T ss_pred CCCEECCCCCCeeC
Confidence 34567777776543
No 217
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.99 E-value=9.1 Score=17.80 Aligned_cols=12 Identities=25% Similarity=0.924 Sum_probs=6.5
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 11 k~~~C~~C~k~f 22 (44)
T 2en7_A 11 KPYVCNECGKAF 22 (44)
T ss_dssp SSSCCTTTCCCC
T ss_pred cCeECCCCCCcc
Confidence 345566666543
No 218
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.92 E-value=12 Score=17.70 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=6.8
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2eq1_A 11 KPYKCNECGKAF 22 (46)
T ss_dssp CCCCCTTTTCCC
T ss_pred CCeECCcCChhh
Confidence 445666666543
No 219
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.83 E-value=13 Score=17.58 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=7.0
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2yth_A 11 KPFQCEECGKRF 22 (46)
T ss_dssp SSBCCSSSCCCB
T ss_pred cCCCCCCCCccc
Confidence 446666666654
No 220
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.81 E-value=14 Score=17.47 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=7.9
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em6_A 10 EKCYKCDVCGKEF 22 (46)
T ss_dssp CCCCBCSSSCCBC
T ss_pred CCCeECCCCCccc
Confidence 3456677777654
No 221
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=21.73 E-value=34 Score=17.98 Aligned_cols=11 Identities=27% Similarity=0.933 Sum_probs=6.0
Q ss_pred EEeecccceee
Q 035291 55 IICTFCGAVLK 65 (68)
Q Consensus 55 ~~Ct~C~r~L~ 65 (68)
+.|+.|+..+.
T Consensus 10 ~~C~~C~~~i~ 20 (39)
T 2i5o_A 10 VPCEKCGSLVP 20 (39)
T ss_dssp EECTTTCCEEE
T ss_pred cccccccCcCC
Confidence 45666665543
No 222
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=21.72 E-value=49 Score=24.27 Aligned_cols=8 Identities=25% Similarity=0.654 Sum_probs=3.8
Q ss_pred eeCCCCCC
Q 035291 22 GICSRCGG 29 (68)
Q Consensus 22 g~Cp~CGg 29 (68)
..|+.||.
T Consensus 245 ~~C~~C~~ 252 (392)
T 3axs_A 245 QYCFNCMN 252 (392)
T ss_dssp EECTTTCC
T ss_pred EECCCCCC
Confidence 34555554
No 223
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.68 E-value=13 Score=17.65 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=7.6
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2elz_A 10 EKPYKCEDCGKGY 22 (46)
T ss_dssp CSSCBCSSSCCBC
T ss_pred CCCeeCcccCchh
Confidence 3456666676654
No 224
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.67 E-value=34 Score=19.11 Aligned_cols=9 Identities=44% Similarity=1.250 Sum_probs=7.3
Q ss_pred eCCCCCCce
Q 035291 23 ICSRCGGGA 31 (68)
Q Consensus 23 ~Cp~CGg~v 31 (68)
.||-||..-
T Consensus 38 ~CP~Cg~~K 46 (54)
T 4rxn_A 38 VCPLCGVGK 46 (54)
T ss_dssp BCTTTCCBG
T ss_pred cCcCCCCcH
Confidence 899999753
No 225
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.64 E-value=28 Score=18.14 Aligned_cols=14 Identities=29% Similarity=0.698 Sum_probs=10.7
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|..|++...
T Consensus 36 ~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 36 ALRFPCEFCGKRFE 49 (78)
T ss_dssp TCCEECTTTCCEES
T ss_pred CcccCCCCCCchhC
Confidence 46789999988754
No 226
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.64 E-value=14 Score=17.39 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=7.3
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 11 k~~~C~~C~k~F 22 (47)
T 2epx_A 11 KPYECIECGKAF 22 (47)
T ss_dssp CSBCCSSSCCCB
T ss_pred CCEECCccCchh
Confidence 446677776654
No 227
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=21.62 E-value=32 Score=21.29 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=9.0
Q ss_pred CceeCCCCCCce
Q 035291 20 AAGICSRCGGGA 31 (68)
Q Consensus 20 a~g~Cp~CGg~v 31 (68)
-...|||||-.-
T Consensus 47 g~~~CpYCg~~y 58 (87)
T 2jz8_A 47 DEKICPYCSTLY 58 (87)
T ss_dssp CEECCTTTCCEE
T ss_pred CeEECCCCCCEe
Confidence 446899999754
No 228
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.59 E-value=30 Score=17.85 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=7.2
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 13 k~~~C~~C~k~f 24 (72)
T 1x6e_A 13 KPYGCVECGKAF 24 (72)
T ss_dssp CCEECSSSCCEE
T ss_pred CCccCCCCCCcc
Confidence 456666666654
No 229
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.53 E-value=12 Score=17.68 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=7.3
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2ytn_A 10 KKPYKCNECGKVF 22 (46)
T ss_dssp CSSCBCTTTCCBC
T ss_pred CcCeECCCCCCee
Confidence 3445666666553
No 230
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.41 E-value=12 Score=17.72 Aligned_cols=12 Identities=17% Similarity=0.650 Sum_probs=7.3
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2enh_A 11 KPYECDVCRKAF 22 (46)
T ss_dssp SSCBCTTTCCBC
T ss_pred CCcCCCCcCchh
Confidence 446677776654
No 231
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=21.33 E-value=14 Score=19.67 Aligned_cols=9 Identities=33% Similarity=0.785 Sum_probs=5.2
Q ss_pred ceeCCCCCC
Q 035291 21 AGICSRCGG 29 (68)
Q Consensus 21 ~g~Cp~CGg 29 (68)
+..|.+||.
T Consensus 12 ~~~C~~Cg~ 20 (55)
T 1a1t_A 12 TVKCFNCGK 20 (55)
T ss_dssp TCBCTTTCC
T ss_pred CcceeeeCC
Confidence 345666664
No 232
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.32 E-value=29 Score=17.75 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=7.4
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 7 ~~~~~C~~C~k~f 19 (70)
T 1x5w_A 7 GHPEKCSECSYSC 19 (70)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCeECCCCCccc
Confidence 3456666666554
No 233
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.30 E-value=14 Score=17.45 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=7.8
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytq_A 10 EKPYGCSECGKAF 22 (46)
T ss_dssp CCSCBCSSSCCBC
T ss_pred CCCcCCCccChhh
Confidence 3456677776654
No 234
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.19 E-value=14 Score=17.52 Aligned_cols=12 Identities=17% Similarity=0.570 Sum_probs=7.4
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2en9_A 11 KLFKCNECKKTF 22 (46)
T ss_dssp CCCBCTTTCCBC
T ss_pred CCEECCccCccc
Confidence 456677776654
No 235
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=21.17 E-value=6.2 Score=21.87 Aligned_cols=10 Identities=40% Similarity=0.627 Sum_probs=8.6
Q ss_pred eeCCCCCCce
Q 035291 22 GICSRCGGGA 31 (68)
Q Consensus 22 g~Cp~CGg~v 31 (68)
-.|++||..+
T Consensus 19 ~~C~~CG~~i 28 (49)
T 2l8e_A 19 LKCEYCGKYA 28 (49)
T ss_dssp EECTTTCCEE
T ss_pred CcChhccCcc
Confidence 4699999987
No 236
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.14 E-value=13 Score=17.66 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=7.5
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2emz_A 11 RPFKCNECGKGF 22 (46)
T ss_dssp CSCCCSSSCCCC
T ss_pred CCeECCCCCccc
Confidence 456677776654
No 237
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=21.11 E-value=28 Score=17.12 Aligned_cols=14 Identities=14% Similarity=0.508 Sum_probs=10.2
Q ss_pred eeeEEeecccceee
Q 035291 52 WRAIICTFCGAVLK 65 (68)
Q Consensus 52 kr~~~Ct~C~r~L~ 65 (68)
.+.|.|+.|++...
T Consensus 28 ~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 28 EKPYPCGLCNRAFT 41 (60)
T ss_dssp SCSEECTTTCCEES
T ss_pred CCCccCCCCCCccC
Confidence 45688888888654
No 238
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.06 E-value=37 Score=18.34 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=10.6
Q ss_pred ccCce--eCCCCCCce
Q 035291 18 KPAAG--ICSRCGGGA 31 (68)
Q Consensus 18 ~~a~g--~Cp~CGg~v 31 (68)
+.+|- .||.||..-
T Consensus 25 ~~lP~dw~CP~Cg~~k 40 (46)
T 6rxn_A 25 DQLPDDWCCPVCGVSK 40 (46)
T ss_dssp GGSCTTCBCTTTCCBG
T ss_pred hhCCCCCcCcCCCCcH
Confidence 45666 999999753
No 239
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=21.05 E-value=50 Score=18.50 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=24.2
Q ss_pred eeccCceeCCC--CCCceeEEEeeeeeEEEEEeeeeceeeeEEeeccccee
Q 035291 16 KCKPAAGICSR--CGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVL 64 (68)
Q Consensus 16 g~~~a~g~Cp~--CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L 64 (68)
|.+-.|-.|.+ |++.+.- .. .+-. .-++..|.+|+.+=
T Consensus 4 ~~~~~pvRC~r~~CraylNP-----~~-----~~~~-~~~~W~C~~C~~~N 43 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNP-----LC-----QVDY-RAKLWACNFCYQRN 43 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCT-----TS-----EEEG-GGTEEECSSSCCEE
T ss_pred cCCCCCcccCCCCCCeEECC-----ce-----EEEC-CCCEEEcccCCCcC
Confidence 56777889988 9988731 11 1111 23577899998653
No 240
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.83 E-value=13 Score=17.47 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=6.8
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 11 ~~~~C~~C~k~f 22 (46)
T 2eop_A 11 KPHECRECGKSF 22 (46)
T ss_dssp CSCBCTTTCCBC
T ss_pred CCeeCCCCCchh
Confidence 445666666543
No 241
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.79 E-value=11 Score=17.77 Aligned_cols=13 Identities=23% Similarity=0.578 Sum_probs=7.6
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ep1_A 10 EKPYECSDCGKSF 22 (46)
T ss_dssp CCSSCCSSSCCCC
T ss_pred CCCcCCCCCCchh
Confidence 3446677776654
No 242
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.78 E-value=19 Score=23.19 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=20.5
Q ss_pred eeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 22 GICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 22 g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
-.|+.||..+...+.-...---|= ..=|.|+.|++.|.
T Consensus 116 ~~C~~C~~~I~~~~~v~a~~~~~H------~~CF~C~~C~~~L~ 153 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIGAGKSWH------KSCFRCAKCGKSLE 153 (192)
T ss_dssp EECTTTSCEECSSSCEEETTEEEC------TTTCBCTTTCCBCC
T ss_pred CcCCCCCCEecCcEEEecCCCccc------hhcCCccccCCCCC
Confidence 469999998853221111110111 12356888888774
No 243
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=20.78 E-value=51 Score=22.35 Aligned_cols=11 Identities=18% Similarity=0.610 Sum_probs=9.3
Q ss_pred ceeCCCCCCce
Q 035291 21 AGICSRCGGGA 31 (68)
Q Consensus 21 ~g~Cp~CGg~v 31 (68)
+-.||.|||.+
T Consensus 145 ~p~C~~Cgg~l 155 (246)
T 1yc5_A 145 VPLCDDCNSLI 155 (246)
T ss_dssp SCBCTTTCCBE
T ss_pred CCCCCCCCCcc
Confidence 45899999987
No 244
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=20.60 E-value=49 Score=23.80 Aligned_cols=30 Identities=27% Similarity=0.580 Sum_probs=19.8
Q ss_pred eeCCCCCCc--eeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 22 GICSRCGGG--ASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 22 g~Cp~CGg~--v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
-.||.||+. -...|-+ --+.+|+-||-.|.
T Consensus 22 ~~Cp~C~~~~~~lv~D~~--------------~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFS--------------EGDVVCALCGLVLS 53 (345)
T ss_dssp CCCSSCCCSSCCEEEEGG--------------GTEEEETTTCBEEE
T ss_pred CcCCCCCCCCCceeEECC--------------CCcEEeCCCCCCcc
Confidence 379999982 2244443 45677888887764
No 245
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=20.54 E-value=8.5 Score=24.26 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=25.3
Q ss_pred CceeCCCCCCceeEEEeeeee-EEEEEeeeeceeeeEEeecccceee
Q 035291 20 AAGICSRCGGGASVADMKTAT-RFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 20 a~g~Cp~CGg~v~a~dv~s~~-rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
.+-.||.||-.+.-.|++... .-| .+|...|..|+..+.
T Consensus 109 ~~v~C~~C~~~~~r~~l~~H~~~~C-------~~r~~~C~~C~~~~~ 148 (170)
T 3hcs_A 109 ALMDCPQCQRPFQKFHINIHILKDC-------PRRQVSCDNCAASMA 148 (170)
T ss_dssp SEEECTTTCCEEEGGGHHHHHHHTC-------TTCEEECTTTCCEEE
T ss_pred eeeECCCCChHHHHHHHHHHhhhhC-------CCCCeECCCCCCccC
Confidence 455788888777666665543 233 357778888887654
No 246
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.52 E-value=13 Score=17.41 Aligned_cols=12 Identities=25% Similarity=0.730 Sum_probs=7.1
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 11 ~~~~C~~C~k~f 22 (44)
T 2eou_A 11 TTSECQECGKIF 22 (44)
T ss_dssp CCCCCTTTCCCC
T ss_pred cCeECCCCCccc
Confidence 446666666654
No 247
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.47 E-value=13 Score=17.69 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=8.1
Q ss_pred eeeEEeeccccee
Q 035291 52 WRAIICTFCGAVL 64 (68)
Q Consensus 52 kr~~~Ct~C~r~L 64 (68)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2eom_A 10 ERGHRCSDCGKFF 22 (46)
T ss_dssp CSSCCCSSSCCCC
T ss_pred CCCcCCCCCCCee
Confidence 3456677777654
No 248
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.38 E-value=38 Score=19.07 Aligned_cols=41 Identities=12% Similarity=0.335 Sum_probs=23.3
Q ss_pred ccCceeCCCCCCceeEEEeeeeeEEEEEeeeeceeeeEEeecccceee
Q 035291 18 KPAAGICSRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFCGAVLK 65 (68)
Q Consensus 18 ~~a~g~Cp~CGg~v~a~dv~s~~rfCflPl~~k~kr~~~Ct~C~r~L~ 65 (68)
......|+.||..+.+.-|.. +--.|. ..=|.|+.|++.|.
T Consensus 22 ~~~~~~C~~C~~~I~~~~v~a------~~~~~H-~~CF~C~~C~~~L~ 62 (90)
T 2dar_A 22 GKRTPMCAHCNQVIRGPFLVA------LGKSWH-PEEFNCAHCKNTMA 62 (90)
T ss_dssp TTCCCBBSSSCCBCCSCEEEE------TTEEEC-TTTCBCSSSCCBCS
T ss_pred CCCCCCCccCCCEecceEEEE------CCcccc-ccCCccCCCCCCCC
Confidence 344568999999984332221 111111 23356888888775
No 249
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=20.26 E-value=44 Score=18.92 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=11.1
Q ss_pred ccCceeCCCCCCce
Q 035291 18 KPAAGICSRCGGGA 31 (68)
Q Consensus 18 ~~a~g~Cp~CGg~v 31 (68)
.++...||+||...
T Consensus 27 ~p~l~~c~~cGe~~ 40 (60)
T 3v2d_5 27 PPTLVPCPECKAMK 40 (60)
T ss_dssp CCCCEECTTTCCEE
T ss_pred CCceeECCCCCCee
Confidence 46678899999865
No 250
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=20.25 E-value=3.7 Score=22.84 Aligned_cols=40 Identities=28% Similarity=0.509 Sum_probs=26.8
Q ss_pred ccCceeCC-CCCCceeEEEeeeeeE-EEEEeeeeceeeeEEeeccccee
Q 035291 18 KPAAGICS-RCGGGASVADMKTATR-FCHVPFYWKSWRAIICTFCGAVL 64 (68)
Q Consensus 18 ~~a~g~Cp-~CGg~v~a~dv~s~~r-fCflPl~~k~kr~~~Ct~C~r~L 64 (68)
.-++-.|| .||..+.-.|++.... -| .+|.+.|..|+..+
T Consensus 13 ~~~~v~C~~~C~~~v~r~~l~~H~~~~C-------~~r~v~C~~C~~~~ 54 (76)
T 2yuc_A 13 SFNVIPCPNRCPMKLSRRDLPAHLQHDC-------PKRRLKCEFCGCDF 54 (76)
T ss_dssp CCSCCBCTTCCSCBCCSSSSTTTTTTSC-------TTSCCCCSSSCCCC
T ss_pred CCcccCCCccccHHhhHhHHHhhCHhhC-------CCcceECCCCCCcc
Confidence 34566784 7998888888876543 23 35677788777654
No 251
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.25 E-value=14 Score=17.38 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=7.3
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2epz_A 11 KPFDCIDCGKAF 22 (46)
T ss_dssp CSBCCTTTCCCB
T ss_pred CCeECCCCCcee
Confidence 456677776654
No 252
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.08 E-value=15 Score=17.25 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=7.2
Q ss_pred eeEEeeccccee
Q 035291 53 RAIICTFCGAVL 64 (68)
Q Consensus 53 r~~~Ct~C~r~L 64 (68)
+.|.|..|++..
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2eq4_A 11 KLYNCKECGKSF 22 (46)
T ss_dssp CCCCBTTTTBCC
T ss_pred CCeECCCCCCcc
Confidence 446666676654
No 253
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=20.08 E-value=38 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=8.3
Q ss_pred ccCceeCCCCCCce
Q 035291 18 KPAAGICSRCGGGA 31 (68)
Q Consensus 18 ~~a~g~Cp~CGg~v 31 (68)
++..=.|+.||.-+
T Consensus 25 ~~v~Y~C~~CG~~~ 38 (70)
T 1twf_L 25 ATLKYICAECSSKL 38 (70)
T ss_dssp CCCCEECSSSCCEE
T ss_pred ceEEEECCCCCCcc
Confidence 44555666666654
No 254
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=20.04 E-value=37 Score=19.53 Aligned_cols=11 Identities=27% Similarity=0.755 Sum_probs=7.2
Q ss_pred ceeCCCCCCce
Q 035291 21 AGICSRCGGGA 31 (68)
Q Consensus 21 ~g~Cp~CGg~v 31 (68)
--+||.||+..
T Consensus 17 k~~CP~CG~~t 27 (60)
T 2aus_D 17 KETCPVCGEKT 27 (60)
T ss_dssp SSBCTTTCSBC
T ss_pred cccCcCCCCcc
Confidence 44577777765
Done!