BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035301
(68 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04486|RAA2A_ARATH Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2
SV=1
Length = 217
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/56 (98%), Positives = 55/56 (98%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
MARR DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
Sbjct: 1 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
>sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1
Length = 216
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
MA R D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQV
Sbjct: 1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV 56
>sp|Q39434|RB2BV_BETVU Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1
Length = 214
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
MA R D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQV
Sbjct: 1 MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV 56
>sp|Q9LNW1|RAA2B_ARATH Ras-related protein RABA2b OS=Arabidopsis thaliana GN=RABA2B PE=2
SV=2
Length = 214
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
MA R D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQV
Sbjct: 1 MANRIDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV 56
>sp|Q40523|RB11A_TOBAC Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2
SV=1
Length = 216
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
MA R D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQV
Sbjct: 1 MANRVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV 56
>sp|Q96283|RAA2C_ARATH Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2
SV=4
Length = 217
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/56 (87%), Positives = 52/56 (92%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
M R D+EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRT QV
Sbjct: 1 MTHRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQV 56
>sp|Q9FIF9|RAA2D_ARATH Ras-related protein RABA2d OS=Arabidopsis thaliana GN=RABA2D PE=2
SV=1
Length = 217
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/56 (85%), Positives = 54/56 (96%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
MA R +++YDYLFK+VLIGDSGVGK+N+LSRFTRNEFCLESKSTIGVEFATRTLQV
Sbjct: 1 MAHRVEQDYDYLFKIVLIGDSGVGKTNILSRFTRNEFCLESKSTIGVEFATRTLQV 56
>sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2
SV=1
Length = 217
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/57 (85%), Positives = 53/57 (92%)
Query: 2 ARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58
A RAD+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++ V +
Sbjct: 3 AYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDD 59
>sp|Q9FK68|RAA1C_ARATH Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1
SV=1
Length = 216
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/55 (87%), Positives = 52/55 (94%)
Query: 4 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58
RAD+EYDYLFKVVLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFATR+L V +
Sbjct: 5 RADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDD 59
>sp|Q39572|YPTC6_CHLRE Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6
PE=3 SV=1
Length = 216
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/56 (83%), Positives = 53/56 (94%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
M+ + D++YDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 1 MSHKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQV 56
>sp|P40393|RIC2_ORYSJ Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2
PE=2 SV=2
Length = 217
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/53 (90%), Positives = 52/53 (98%)
Query: 4 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
RA+++YDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR+LQV
Sbjct: 6 RAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQV 58
>sp|Q9SN35|RAA1D_ARATH Ras-related protein RABA1d OS=Arabidopsis thaliana GN=RABA1D PE=2
SV=1
Length = 214
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/53 (90%), Positives = 51/53 (96%)
Query: 4 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
RAD++YDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR+L V
Sbjct: 5 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNV 57
>sp|Q5ZJN2|RB11A_CHICK Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1
Length = 216
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|P62494|RB11A_RAT Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1
SV=3
Length = 216
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|P62493|RB11A_RABIT Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A
PE=2 SV=3
Length = 216
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|Q5R9M7|RB11A_PONAB Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3
Length = 216
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|Q52NJ1|RB11A_PIG Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3
Length = 216
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|P62492|RB11A_MOUSE Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3
Length = 216
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|P62491|RB11A_HUMAN Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3
Length = 216
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|P62490|RB11A_CANFA Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2
SV=3
Length = 216
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|Q2TA29|RB11A_BOVIN Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3
Length = 216
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|O35509|RB11B_RAT Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2
SV=4
Length = 218
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|Q15907|RB11B_HUMAN Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4
Length = 218
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|Q3MHP2|RB11B_BOVIN Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3
Length = 218
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|P46638|RB11B_MOUSE Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3
Length = 218
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|P22129|RB11B_DIPOM Ras-related protein Rab-11B OS=Diplobatis ommata PE=2 SV=1
Length = 218
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55
>sp|Q01111|YPT3_NICPL Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3
PE=2 SV=1
Length = 218
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/55 (83%), Positives = 52/55 (94%)
Query: 4 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58
RAD+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFAT++L + N
Sbjct: 5 RADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDN 59
>sp|P28185|RAA1A_ARATH Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=1
SV=1
Length = 216
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/53 (88%), Positives = 51/53 (96%)
Query: 4 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
RADEEYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFAT+T +V
Sbjct: 5 RADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKV 57
>sp|O49513|RAA1E_ARATH Ras-related protein RABA1e OS=Arabidopsis thaliana GN=RABA1E PE=2
SV=1
Length = 217
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/55 (83%), Positives = 52/55 (94%)
Query: 2 ARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
A RAD++YDYLFK+VLIGDSGVGKSNLLSRFTRNEF +ESKSTIGVEFATR++ V
Sbjct: 3 AYRADDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHV 57
>sp|Q9LK99|RAA1G_ARATH Ras-related protein RABA1g OS=Arabidopsis thaliana GN=RABA1G PE=2
SV=1
Length = 217
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/55 (83%), Positives = 52/55 (94%)
Query: 2 ARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
A RAD++YD+L+KVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++ V
Sbjct: 3 AYRADDDYDFLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHV 57
>sp|P36412|RB11A_DICDI Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A
PE=1 SV=1
Length = 214
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 51/54 (94%)
Query: 2 ARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQ 55
++ + EEYDYL+K+VLIGDSGVGKSNLLSRFTRNEF LE+KSTIGVEFATRT+Q
Sbjct: 3 SKGSQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQ 56
>sp|Q40195|RB11E_LOTJA Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1
Length = 218
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/53 (84%), Positives = 51/53 (96%)
Query: 4 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
+AD+EYDYLFK+VLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFAT++L +
Sbjct: 5 KADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNI 57
>sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1
Length = 218
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/53 (86%), Positives = 50/53 (94%)
Query: 4 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
R D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFAT+TL V
Sbjct: 5 RTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNV 57
>sp|Q39222|RAA1B_ARATH Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2
SV=1
Length = 216
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/53 (86%), Positives = 51/53 (96%)
Query: 4 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
R +++YDYLFKVVLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFATRTL+V
Sbjct: 5 RVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKV 57
>sp|Q40521|RB11B_TOBAC Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2
SV=1
Length = 217
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 53/55 (96%)
Query: 4 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58
RA+++YDYLFK+VLIGDSGVGKSNLLSRF+RNEF LESKSTIGVEFATR+++V +
Sbjct: 6 RAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDD 60
>sp|Q40723|RLGP2_ORYSJ Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2
PE=2 SV=2
Length = 217
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 49/56 (87%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
M R D EY YLFK+VLIGDSGVGKSN+LSRFTRN F L+SKSTIGVEFAT++LQ+
Sbjct: 1 MGGRVDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQM 56
>sp|Q1PEX3|RAA1H_ARATH Ras-related protein RABA1h OS=Arabidopsis thaliana GN=RABA1H PE=2
SV=1
Length = 218
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 51/55 (92%)
Query: 4 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58
+A+++YDYLFKVVL GDSGVGKSNLLSRFTRN+F +S+STIGVEFATR++QV +
Sbjct: 5 KAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRSTIGVEFATRSIQVDD 59
>sp|P51996|YPT32_YEAST GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YPT32 PE=1 SV=3
Length = 222
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/51 (82%), Positives = 48/51 (94%)
Query: 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58
+YDYLFK+VLIGDSGVGKSNLLSRFT +EF +ESKSTIGVEFATRT++V N
Sbjct: 9 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVEN 59
>sp|P17610|YPT3_SCHPO GTP-binding protein ypt3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ypt3 PE=1 SV=1
Length = 214
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 47/53 (88%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58
++EYDYLFK VLIGDSGVGKSNLL RFTRNEF +ESKSTIGVEFATR + + N
Sbjct: 4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDN 56
>sp|Q9S810|RAA1I_ARATH Ras-related protein RABA1i OS=Arabidopsis thaliana GN=RABA1I PE=2
SV=1
Length = 218
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 50/54 (92%)
Query: 2 ARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQ 55
A RA+++YDYLFKVVL GDSGVGKSNLLSRFTRN+F +S++TIGVEFATR++Q
Sbjct: 3 AYRAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRATIGVEFATRSIQ 56
>sp|P38555|YPT31_YEAST GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YPT31 PE=1 SV=3
Length = 223
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/49 (81%), Positives = 47/49 (95%)
Query: 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
+YD LFK+VLIGDSGVGKSNLLSRFT+NEF ++SKSTIGVEFATRTL++
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI 57
>sp|Q58DW6|RAB25_BOVIN Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1
Length = 213
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 51/56 (91%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
M RA+E+Y+++FKVVLIG+SGVGK+NLLSRFTRNEF +S++TIGVEF+TRT+ +
Sbjct: 1 MGNRAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML 56
>sp|Q9WTL2|RAB25_MOUSE Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2
Length = 213
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 50/56 (89%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
M R DE+Y+++FKVVLIG+SGVGK+NLLSRFTRNEF +S++TIGVEF+TRT+ +
Sbjct: 1 MGNRTDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML 56
>sp|E2RQ15|RAB25_CANFA Ras-related protein Rab-25 OS=Canis familiaris GN=RAB25 PE=3 SV=1
Length = 213
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 50/56 (89%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
M R +E+Y+++FKVVLIG+SGVGK+NLLSRFTRNEF +S++TIGVEF+TRT+ +
Sbjct: 1 MGNRTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML 56
>sp|Q9FE79|RAA4C_ARATH Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2
SV=1
Length = 223
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 46/51 (90%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
+++ DY+FKVVLIGDS VGKS LL+RF+RNEF +ESK+TIGVEF TRTL++
Sbjct: 9 NQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEI 59
>sp|P57735|RAB25_HUMAN Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2
Length = 213
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 49/56 (87%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
M +E+Y+++FKVVLIG+SGVGK+NLLSRFTRNEF +S++TIGVEF+TRT+ +
Sbjct: 1 MGNGTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML 56
>sp|P46629|RAB25_RABIT Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2
SV=1
Length = 213
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 48/54 (88%)
Query: 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTL 54
M +E+Y+++FKVVLIG+SGVGK+NLLSRFTRNEF +S++TIGVEF+TRT+
Sbjct: 1 MGNGKEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV 54
>sp|Q9LNK1|RABA3_ARATH Ras-related protein RABA3 OS=Arabidopsis thaliana GN=RABA3 PE=2
SV=1
Length = 237
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 42/48 (87%)
Query: 7 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTL 54
E+ DY+FKVV+IGDS VGK+ LLSRFT NEFC +SKSTIGVEF TRT+
Sbjct: 23 EKIDYVFKVVVIGDSAVGKTQLLSRFTHNEFCYDSKSTIGVEFQTRTI 70
>sp|Q0WQN4|RAA6B_ARATH Ras-related protein RABA6b OS=Arabidopsis thaliana GN=RABA6B PE=2
SV=2
Length = 229
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 44/51 (86%)
Query: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56
DEE DYLFK VLIGDS VGKSNLLSRF+R+EF L+SK TIGV+FA R ++V
Sbjct: 7 DEECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVDFAYRNVRV 57
>sp|Q40522|RB11D_TOBAC Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2
SV=1
Length = 222
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/56 (66%), Positives = 46/56 (82%)
Query: 5 ADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFS 60
A ++ DY+FKVVLIGDS VGKS +L+RF RNEF L+SK+TIGVEF TRTL + + S
Sbjct: 8 ASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKS 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,611,311
Number of Sequences: 539616
Number of extensions: 604234
Number of successful extensions: 8730
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 8050
Number of HSP's gapped (non-prelim): 701
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)