Query 035301
Match_columns 68
No_of_seqs 155 out of 1149
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 17:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.7 3.2E-18 1.1E-22 95.5 6.1 66 1-68 1-67 (216)
2 2ew1_A RAS-related protein RAB 99.6 4.8E-15 1.7E-19 81.4 8.2 62 5-68 19-80 (201)
3 1oix_A RAS-related protein RAB 99.6 8.2E-15 2.8E-19 79.7 8.3 60 7-68 24-83 (191)
4 2oil_A CATX-8, RAS-related pro 99.6 1.6E-14 5.5E-19 78.2 8.5 62 5-68 18-79 (193)
5 2y8e_A RAB-protein 6, GH09086P 99.6 1.6E-14 5.4E-19 76.9 8.0 66 1-68 3-68 (179)
6 2a5j_A RAS-related protein RAB 99.6 1.8E-14 6.2E-19 78.0 8.0 63 4-68 13-75 (191)
7 2hup_A RAS-related protein RAB 99.6 1.7E-14 5.9E-19 78.9 6.9 60 7-68 24-83 (201)
8 2f9l_A RAB11B, member RAS onco 99.5 3.4E-14 1.2E-18 77.5 7.7 57 10-68 3-59 (199)
9 1z0f_A RAB14, member RAS oncog 99.5 4.4E-14 1.5E-18 75.1 7.9 61 6-68 9-69 (179)
10 3bc1_A RAS-related protein RAB 99.5 5.1E-14 1.7E-18 75.7 8.0 56 4-59 3-59 (195)
11 2gf9_A RAS-related protein RAB 99.5 7.5E-14 2.6E-18 75.4 8.7 61 6-68 16-76 (189)
12 2bme_A RAB4A, RAS-related prot 99.5 9.9E-14 3.4E-18 74.4 8.5 59 8-68 6-64 (186)
13 2il1_A RAB12; G-protein, GDP, 99.5 4.4E-14 1.5E-18 76.7 7.2 61 6-68 20-80 (192)
14 1z08_A RAS-related protein RAB 99.5 5.3E-14 1.8E-18 74.4 7.3 58 9-68 3-60 (170)
15 2o52_A RAS-related protein RAB 99.5 3.3E-14 1.1E-18 77.7 6.7 59 8-68 21-79 (200)
16 3cpj_B GTP-binding protein YPT 99.5 4.6E-14 1.6E-18 78.2 7.2 66 1-68 1-67 (223)
17 1wms_A RAB-9, RAB9, RAS-relate 99.5 8.7E-14 3E-18 74.1 8.0 58 9-68 4-61 (177)
18 3c5c_A RAS-like protein 12; GD 99.5 7.7E-14 2.6E-18 75.5 7.9 58 8-68 17-74 (187)
19 1zbd_A Rabphilin-3A; G protein 99.5 1.4E-13 4.8E-18 74.9 8.9 59 8-68 4-62 (203)
20 2efe_B Small GTP-binding prote 99.5 7.1E-14 2.4E-18 74.6 7.5 61 6-68 6-66 (181)
21 3tw8_B RAS-related protein RAB 99.5 1.1E-13 3.9E-18 73.6 8.0 59 8-68 5-63 (181)
22 3tkl_A RAS-related protein RAB 99.5 1.4E-13 4.9E-18 74.3 8.5 60 7-68 11-70 (196)
23 2fu5_C RAS-related protein RAB 99.5 2.3E-14 8E-19 76.8 5.3 59 8-68 4-62 (183)
24 1z2a_A RAS-related protein RAB 99.5 7.9E-14 2.7E-18 73.5 7.1 57 10-68 3-59 (168)
25 2bcg_Y Protein YP2, GTP-bindin 99.5 1.1E-13 3.7E-18 75.6 7.6 59 8-68 4-62 (206)
26 2fg5_A RAB-22B, RAS-related pr 99.5 9.4E-14 3.2E-18 75.3 7.3 62 5-68 16-77 (192)
27 1x3s_A RAS-related protein RAB 99.5 1.6E-13 5.4E-18 74.0 8.2 59 8-68 11-69 (195)
28 1z06_A RAS-related protein RAB 99.5 1.2E-13 4E-18 74.6 7.4 57 10-68 18-74 (189)
29 2f7s_A C25KG, RAS-related prot 99.5 1.3E-13 4.4E-18 75.8 7.4 53 7-59 20-72 (217)
30 1z0j_A RAB-22, RAS-related pro 99.5 2.7E-13 9.2E-18 71.6 8.3 58 9-68 3-60 (170)
31 1r2q_A RAS-related protein RAB 99.5 2.3E-13 7.9E-18 71.7 7.9 58 9-68 3-60 (170)
32 3q3j_B RHO-related GTP-binding 99.5 1.2E-13 4.1E-18 76.3 6.9 58 8-68 23-80 (214)
33 3kkq_A RAS-related protein M-R 99.5 2.7E-13 9.3E-18 72.6 8.1 58 8-68 14-71 (183)
34 1ek0_A Protein (GTP-binding pr 99.5 2.8E-13 9.6E-18 71.4 8.0 55 12-68 3-57 (170)
35 3ihw_A Centg3; RAS, centaurin, 99.5 2.8E-13 9.5E-18 73.3 8.1 57 8-68 16-72 (184)
36 2atx_A Small GTP binding prote 99.5 1.2E-13 4.2E-18 74.7 6.7 61 5-68 11-71 (194)
37 2p5s_A RAS and EF-hand domain 99.5 1.3E-13 4.3E-18 75.1 6.7 59 8-68 24-82 (199)
38 3cbq_A GTP-binding protein REM 99.5 6.3E-14 2.1E-18 76.5 5.2 59 8-68 19-77 (195)
39 2iwr_A Centaurin gamma 1; ANK 99.5 1.7E-13 5.8E-18 73.1 6.6 54 11-68 6-59 (178)
40 1g16_A RAS-related protein SEC 99.5 1.2E-13 4.1E-18 72.9 6.0 56 11-68 2-57 (170)
41 3reg_A RHO-like small GTPase; 99.5 4.1E-13 1.4E-17 72.7 8.2 58 8-68 19-76 (194)
42 3gj0_A GTP-binding nuclear pro 99.5 4.3E-14 1.5E-18 78.0 4.3 65 2-68 5-69 (221)
43 3dz8_A RAS-related protein RAB 99.5 3.9E-14 1.3E-18 76.7 3.9 59 8-68 19-77 (191)
44 1vg8_A RAS-related protein RAB 99.5 2.9E-13 9.8E-18 73.7 7.3 58 9-68 5-62 (207)
45 1gwn_A RHO-related GTP-binding 99.5 2.2E-13 7.5E-18 74.9 6.8 57 9-68 25-81 (205)
46 1m7b_A RND3/RHOE small GTP-bin 99.5 2.8E-13 9.6E-18 72.9 7.0 57 9-68 4-60 (184)
47 2j1l_A RHO-related GTP-binding 99.5 2.6E-13 9E-18 74.8 7.0 56 10-68 32-87 (214)
48 2hxs_A RAB-26, RAS-related pro 99.5 8.3E-14 2.8E-18 74.2 4.8 58 9-68 3-61 (178)
49 2g6b_A RAS-related protein RAB 99.5 7.1E-13 2.4E-17 70.7 8.3 60 7-68 5-65 (180)
50 2fn4_A P23, RAS-related protei 99.5 7.1E-13 2.4E-17 70.5 8.0 57 9-68 6-62 (181)
51 3cph_A RAS-related protein SEC 99.4 4.2E-13 1.4E-17 73.3 7.2 58 9-68 17-74 (213)
52 3clv_A RAB5 protein, putative; 99.4 3.4E-13 1.1E-17 72.7 6.7 52 9-60 4-55 (208)
53 2g3y_A GTP-binding protein GEM 99.4 3.5E-13 1.2E-17 74.8 6.8 58 8-68 33-92 (211)
54 3t5g_A GTP-binding protein RHE 99.4 7.5E-13 2.6E-17 70.8 7.8 56 10-68 4-59 (181)
55 2q3h_A RAS homolog gene family 99.4 5.6E-13 1.9E-17 72.4 6.8 58 8-68 16-73 (201)
56 2atv_A RERG, RAS-like estrogen 99.4 1.1E-12 3.7E-17 71.2 7.7 56 10-68 26-81 (196)
57 1ky3_A GTP-binding protein YPT 99.4 3.7E-13 1.3E-17 71.7 5.4 58 9-68 5-63 (182)
58 2j0v_A RAC-like GTP-binding pr 99.4 8.6E-13 2.9E-17 72.3 6.9 56 10-68 7-62 (212)
59 1c1y_A RAS-related protein RAP 99.4 1.3E-12 4.4E-17 68.7 7.2 54 12-68 3-56 (167)
60 2bov_A RAla, RAS-related prote 99.4 1.9E-12 6.3E-17 70.4 8.0 57 9-68 11-67 (206)
61 3t1o_A Gliding protein MGLA; G 99.4 9.3E-14 3.2E-18 74.9 2.7 65 1-68 3-79 (198)
62 2a9k_A RAS-related protein RAL 99.4 2.4E-12 8.1E-17 68.8 7.8 57 9-68 15-71 (187)
63 2nzj_A GTP-binding protein REM 99.4 1.4E-12 4.7E-17 69.2 6.7 55 11-68 3-57 (175)
64 1mh1_A RAC1; GTP-binding, GTPa 99.4 3.3E-12 1.1E-16 68.3 8.0 55 11-68 4-58 (186)
65 2yc2_C IFT27, small RAB-relate 99.4 1.8E-13 6.2E-18 74.4 3.0 57 10-68 18-78 (208)
66 2zej_A Dardarin, leucine-rich 99.4 5E-13 1.7E-17 72.1 4.6 45 12-56 2-48 (184)
67 2gf0_A GTP-binding protein DI- 99.4 2.9E-12 9.8E-17 69.3 7.6 56 10-68 6-61 (199)
68 1kao_A RAP2A; GTP-binding prot 99.4 3.9E-12 1.3E-16 66.7 7.9 54 12-68 3-56 (167)
69 3q85_A GTP-binding protein REM 99.4 2E-12 6.9E-17 68.3 6.8 55 12-68 2-56 (169)
70 1u8z_A RAS-related protein RAL 99.4 3.8E-12 1.3E-16 66.8 7.8 54 12-68 4-57 (168)
71 2gco_A H9, RHO-related GTP-bin 99.4 2.3E-12 8E-17 70.3 7.0 56 10-68 23-78 (201)
72 3oes_A GTPase rhebl1; small GT 99.4 1.4E-12 4.9E-17 71.1 6.0 56 10-68 22-77 (201)
73 2erx_A GTP-binding protein DI- 99.4 5.1E-12 1.7E-16 66.6 8.0 54 12-68 3-56 (172)
74 4dsu_A GTPase KRAS, isoform 2B 99.4 6.7E-12 2.3E-16 67.2 8.1 56 10-68 2-57 (189)
75 2cjw_A GTP-binding protein GEM 99.4 2.4E-12 8.3E-17 70.0 6.4 51 10-61 4-56 (192)
76 3l0i_B RAS-related protein RAB 99.4 1.4E-13 4.6E-18 75.0 1.4 59 8-68 29-87 (199)
77 3con_A GTPase NRAS; structural 99.3 8.3E-12 2.8E-16 67.2 8.1 55 11-68 20-74 (190)
78 2fv8_A H6, RHO-related GTP-bin 99.3 5.2E-12 1.8E-16 69.1 7.0 55 11-68 24-78 (207)
79 2ce2_X GTPase HRAS; signaling 99.3 9.4E-12 3.2E-16 65.1 7.5 54 12-68 3-56 (166)
80 4gzl_A RAS-related C3 botulinu 99.3 5.8E-12 2E-16 68.9 6.6 56 10-68 28-83 (204)
81 4bas_A ADP-ribosylation factor 99.3 6.1E-12 2.1E-16 68.0 6.6 43 7-49 12-55 (199)
82 3bwd_D RAC-like GTP-binding pr 99.3 7.9E-13 2.7E-17 70.6 1.7 56 10-68 6-61 (182)
83 2lkc_A Translation initiation 99.3 8.1E-12 2.8E-16 66.4 5.4 51 10-60 6-56 (178)
84 1zd9_A ADP-ribosylation factor 99.3 3.3E-11 1.1E-15 65.0 7.4 41 10-50 20-60 (188)
85 2wji_A Ferrous iron transport 99.3 2.1E-11 7E-16 64.7 6.3 48 12-59 3-50 (165)
86 4djt_A GTP-binding nuclear pro 99.2 7.7E-12 2.6E-16 68.7 4.2 60 8-68 7-66 (218)
87 3q72_A GTP-binding protein RAD 99.2 2.6E-11 9E-16 63.8 5.9 53 12-68 2-54 (166)
88 3c5h_A Glucocorticoid receptor 99.2 7.7E-13 2.6E-17 75.0 -0.1 48 6-53 13-73 (255)
89 2h57_A ADP-ribosylation factor 99.2 1.9E-11 6.5E-16 65.9 5.3 49 9-59 18-67 (190)
90 2wjg_A FEOB, ferrous iron tran 99.2 3.7E-11 1.3E-15 64.5 6.3 50 11-60 6-55 (188)
91 2wkq_A NPH1-1, RAS-related C3 99.2 8.2E-11 2.8E-15 67.8 7.3 55 11-68 154-208 (332)
92 2h17_A ADP-ribosylation factor 99.2 1.6E-11 5.3E-16 65.9 3.9 47 9-58 18-64 (181)
93 1ksh_A ARF-like protein 2; sma 99.2 1.1E-10 3.6E-15 62.7 6.8 47 10-59 16-62 (186)
94 3th5_A RAS-related C3 botulinu 98.8 2.8E-12 9.5E-17 70.0 0.0 56 10-68 28-83 (204)
95 1r8s_A ADP-ribosylation factor 99.1 7.1E-11 2.4E-15 62.0 4.7 43 13-58 1-43 (164)
96 1zj6_A ADP-ribosylation factor 99.1 5.9E-11 2E-15 63.9 4.3 46 10-58 14-59 (187)
97 1svi_A GTP-binding protein YSX 99.1 6.1E-11 2.1E-15 63.9 4.2 50 9-58 20-69 (195)
98 1fzq_A ADP-ribosylation factor 99.1 8.4E-11 2.9E-15 63.2 4.7 47 10-59 14-60 (181)
99 2fh5_B SR-beta, signal recogni 99.1 1.1E-10 3.7E-15 63.9 5.2 54 10-68 5-59 (214)
100 1upt_A ARL1, ADP-ribosylation 99.1 3.5E-10 1.2E-14 59.6 6.7 46 11-59 6-51 (171)
101 1m2o_B GTP-binding protein SAR 99.1 2.4E-10 8.3E-15 61.9 6.1 45 11-58 22-66 (190)
102 3lxx_A GTPase IMAP family memb 99.1 2.9E-10 9.9E-15 63.6 6.5 51 10-60 27-79 (239)
103 1moz_A ARL1, ADP-ribosylation 99.1 6.7E-11 2.3E-15 63.1 3.4 46 10-58 16-61 (183)
104 2b6h_A ADP-ribosylation factor 99.1 1.5E-10 5E-15 62.8 4.8 46 10-58 27-72 (192)
105 1f6b_A SAR1; gtpases, N-termin 99.1 1.5E-10 5.2E-15 63.1 4.7 45 11-58 24-68 (198)
106 2dyk_A GTP-binding protein; GT 99.1 4.3E-10 1.5E-14 58.7 6.1 48 13-60 2-50 (161)
107 3llu_A RAS-related GTP-binding 99.1 3.7E-11 1.3E-15 65.3 1.6 56 8-68 16-74 (196)
108 2gj8_A MNME, tRNA modification 99.1 6.1E-10 2.1E-14 59.5 6.3 49 12-60 4-53 (172)
109 2x77_A ADP-ribosylation factor 99.0 2.2E-10 7.7E-15 61.6 4.0 47 10-59 20-66 (189)
110 3t5d_A Septin-7; GTP-binding p 99.0 2.7E-10 9.2E-15 65.0 4.5 58 9-68 5-70 (274)
111 3a1s_A Iron(II) transport prot 99.0 7.6E-10 2.6E-14 63.0 6.2 49 10-58 3-51 (258)
112 3k53_A Ferrous iron transport 99.0 5.2E-10 1.8E-14 63.7 5.3 49 12-60 3-51 (271)
113 3dpu_A RAB family protein; roc 99.0 4.6E-11 1.6E-15 73.5 0.8 44 9-52 38-81 (535)
114 2qu8_A Putative nucleolar GTP- 99.0 1E-09 3.5E-14 60.8 5.8 29 10-38 27-55 (228)
115 3r7w_A Gtpase1, GTP-binding pr 99.0 2.1E-09 7.2E-14 62.4 6.9 53 11-68 2-57 (307)
116 2cxx_A Probable GTP-binding pr 99.0 4.1E-10 1.4E-14 60.3 3.0 35 12-46 1-35 (190)
117 3iby_A Ferrous iron transport 98.9 1.5E-09 5.1E-14 61.7 5.0 48 13-60 2-49 (256)
118 3pqc_A Probable GTP-binding pr 98.9 4.1E-09 1.4E-13 56.5 6.5 41 8-49 19-59 (195)
119 3r7w_B Gtpase2, GTP-binding pr 98.9 4E-10 1.4E-14 66.4 2.5 48 14-68 1-51 (331)
120 3i8s_A Ferrous iron transport 98.9 1.7E-09 6E-14 61.9 4.7 49 12-60 3-51 (274)
121 2xtp_A GTPase IMAP family memb 98.9 4.8E-09 1.6E-13 59.2 6.3 51 10-60 20-72 (260)
122 1nrj_B SR-beta, signal recogni 98.9 1.4E-09 4.7E-14 59.7 3.6 42 7-48 7-51 (218)
123 2qag_A Septin-2, protein NEDD5 98.9 4E-09 1.4E-13 62.5 5.7 57 10-68 35-100 (361)
124 3lxw_A GTPase IMAP family memb 98.9 2.6E-09 8.9E-14 60.3 4.1 51 10-60 19-71 (247)
125 2qnr_A Septin-2, protein NEDD5 98.9 2.3E-09 7.9E-14 62.2 3.8 33 9-41 15-48 (301)
126 4dhe_A Probable GTP-binding pr 98.8 2.4E-09 8.1E-14 58.8 3.5 29 9-37 26-54 (223)
127 3o47_A ADP-ribosylation factor 98.8 3.6E-09 1.2E-13 62.0 4.3 45 11-58 164-208 (329)
128 3b1v_A Ferrous iron uptake tra 98.8 3.1E-09 1.1E-13 61.0 3.8 33 11-43 2-34 (272)
129 1pui_A ENGB, probable GTP-bind 98.8 1.9E-09 6.4E-14 58.8 2.3 46 11-56 25-70 (210)
130 2hjg_A GTP-binding protein ENG 98.8 1.4E-08 4.7E-13 61.3 5.9 51 10-60 173-224 (436)
131 2hf9_A Probable hydrogenase ni 98.8 4.4E-09 1.5E-13 58.0 3.3 40 11-50 37-76 (226)
132 2qag_C Septin-7; cell cycle, c 98.8 1.2E-08 4.3E-13 61.6 5.4 30 9-38 28-57 (418)
133 2ged_A SR-beta, signal recogni 98.8 5.2E-09 1.8E-13 56.3 3.4 30 10-39 46-75 (193)
134 3lvq_E ARF-GAP with SH3 domain 98.8 2E-08 6.9E-13 61.2 6.2 47 10-59 320-366 (497)
135 1mky_A Probable GTP-binding pr 98.7 1.7E-08 5.7E-13 61.0 5.2 48 13-60 2-50 (439)
136 3def_A T7I23.11 protein; chlor 98.7 4.9E-08 1.7E-12 55.4 6.7 27 11-37 35-61 (262)
137 1mky_A Probable GTP-binding pr 98.7 3.6E-08 1.2E-12 59.5 6.3 50 11-60 179-229 (439)
138 1h65_A Chloroplast outer envel 98.7 2.7E-08 9.2E-13 56.6 4.0 27 11-37 38-64 (270)
139 4dcu_A GTP-binding protein ENG 98.6 9.1E-08 3.1E-12 58.0 5.3 55 10-68 193-248 (456)
140 3gee_A MNME, tRNA modification 98.6 8.3E-08 2.8E-12 58.8 4.5 49 12-60 233-282 (476)
141 1wf3_A GTP-binding protein; GT 98.6 4.2E-07 1.4E-11 52.8 7.3 29 10-38 5-33 (301)
142 2qtf_A Protein HFLX, GTP-bindi 98.5 1.5E-07 5.2E-12 55.9 5.1 48 13-60 179-227 (364)
143 3geh_A MNME, tRNA modification 98.5 3.9E-08 1.3E-12 60.1 2.4 49 12-60 224-273 (462)
144 3qq5_A Small GTP-binding prote 98.5 2.7E-08 9.2E-13 60.2 1.5 52 8-59 30-82 (423)
145 3iev_A GTP-binding protein ERA 98.5 7.5E-07 2.6E-11 51.7 7.2 32 7-38 5-36 (308)
146 4dcu_A GTP-binding protein ENG 98.5 5.4E-08 1.8E-12 59.0 1.9 43 12-55 23-65 (456)
147 2e87_A Hypothetical protein PH 98.4 5.7E-07 2E-11 53.0 5.3 28 10-37 165-192 (357)
148 1xzp_A Probable tRNA modificat 98.4 7.8E-08 2.7E-12 59.0 1.7 49 12-60 243-292 (482)
149 2hjg_A GTP-binding protein ENG 98.4 1.1E-07 3.8E-12 57.4 2.2 34 13-47 4-37 (436)
150 3sop_A Neuronal-specific septi 98.4 1.3E-07 4.6E-12 54.2 2.4 29 12-40 2-30 (270)
151 2aka_B Dynamin-1; fusion prote 98.3 3.3E-07 1.1E-11 52.3 3.3 29 10-38 24-52 (299)
152 1jal_A YCHF protein; nucleotid 98.3 3.1E-07 1E-11 54.8 2.6 25 13-37 3-27 (363)
153 2ohf_A Protein OLA1, GTP-bindi 98.3 6.2E-07 2.1E-11 54.0 3.8 48 11-58 21-68 (396)
154 3j2k_7 ERF3, eukaryotic polype 98.3 4.6E-06 1.6E-10 50.6 6.9 26 9-34 14-39 (439)
155 3t34_A Dynamin-related protein 98.2 1.1E-06 3.9E-11 51.8 4.0 28 11-38 33-60 (360)
156 1wxq_A GTP-binding protein; st 98.2 2.5E-06 8.6E-11 51.3 5.4 24 13-36 1-24 (397)
157 1lnz_A SPO0B-associated GTP-bi 98.2 8.3E-07 2.8E-11 52.5 3.2 25 13-37 159-183 (342)
158 3izy_P Translation initiation 98.2 2.9E-08 1E-12 61.6 -3.1 46 11-56 3-48 (537)
159 1ye8_A Protein THEP1, hypothet 98.2 1.1E-06 3.8E-11 47.6 3.1 23 14-36 2-24 (178)
160 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 2.4E-06 8.1E-11 51.5 4.6 26 12-37 20-45 (392)
161 1ega_A Protein (GTP-binding pr 98.2 7.1E-06 2.4E-10 47.5 6.3 28 11-38 7-34 (301)
162 1s0u_A EIF-2-gamma, translatio 98.1 1.3E-05 4.4E-10 48.1 7.0 45 10-54 6-55 (408)
163 3tif_A Uncharacterized ABC tra 98.1 1.6E-06 5.6E-11 48.7 2.9 26 14-39 33-58 (235)
164 1kgd_A CASK, peripheral plasma 98.1 1.7E-06 5.9E-11 46.5 2.9 22 14-35 7-28 (180)
165 3cnl_A YLQF, putative uncharac 98.1 2.6E-06 8.9E-11 48.7 3.7 26 13-38 100-125 (262)
166 1jwy_B Dynamin A GTPase domain 98.1 2E-06 6.8E-11 49.5 3.2 28 10-37 22-49 (315)
167 1lvg_A Guanylate kinase, GMP k 98.1 2E-06 6.8E-11 47.0 2.9 21 14-34 6-26 (198)
168 1mv5_A LMRA, multidrug resista 98.1 3.6E-06 1.2E-10 47.5 4.0 29 14-42 30-58 (243)
169 1wb1_A Translation elongation 98.1 9.3E-06 3.2E-10 49.8 6.0 26 11-36 18-43 (482)
170 2wsm_A Hydrogenase expression/ 98.1 1.7E-06 5.8E-11 47.4 2.4 26 11-36 29-54 (221)
171 2x2e_A Dynamin-1; nitration, h 98.1 1.5E-06 5.2E-11 51.2 2.3 28 11-38 30-57 (353)
172 2onk_A Molybdate/tungstate ABC 98.1 2.5E-06 8.5E-11 48.2 3.1 26 14-39 26-51 (240)
173 4g1u_C Hemin import ATP-bindin 98.1 3.4E-06 1.2E-10 48.3 3.6 28 14-41 39-66 (266)
174 1znw_A Guanylate kinase, GMP k 98.1 2.3E-06 7.9E-11 46.9 2.8 23 14-36 22-44 (207)
175 2pcj_A ABC transporter, lipopr 98.1 2.1E-06 7.1E-11 48.0 2.7 26 14-39 32-57 (224)
176 1b0u_A Histidine permease; ABC 98.1 2.4E-06 8.3E-11 48.7 3.0 26 14-39 34-59 (262)
177 1htw_A HI0065; nucleotide-bind 98.1 2.8E-06 9.4E-11 45.3 3.0 28 14-42 35-62 (158)
178 1s96_A Guanylate kinase, GMP k 98.1 2.5E-06 8.6E-11 47.6 2.9 23 14-36 18-40 (219)
179 2ff7_A Alpha-hemolysin translo 98.1 2.9E-06 1E-10 48.0 3.1 26 14-39 37-62 (247)
180 1g6h_A High-affinity branched- 98.1 2.7E-06 9.3E-11 48.4 2.9 26 14-39 35-60 (257)
181 3a00_A Guanylate kinase, GMP k 98.1 2.7E-06 9.4E-11 45.9 2.8 21 15-35 4-24 (186)
182 3gfo_A Cobalt import ATP-bindi 98.1 2.8E-06 9.7E-11 48.9 3.0 25 14-38 36-60 (275)
183 2olj_A Amino acid ABC transpor 98.0 3.2E-06 1.1E-10 48.4 3.0 26 14-39 52-77 (263)
184 2pze_A Cystic fibrosis transme 98.0 3.8E-06 1.3E-10 47.0 3.2 27 14-40 36-62 (229)
185 1ji0_A ABC transporter; ATP bi 98.0 3.2E-06 1.1E-10 47.6 2.9 26 14-39 34-59 (240)
186 2ihy_A ABC transporter, ATP-bi 98.0 3.7E-06 1.3E-10 48.4 3.2 26 14-39 49-74 (279)
187 1sgw_A Putative ABC transporte 98.0 3.5E-06 1.2E-10 46.9 3.0 26 14-39 37-62 (214)
188 3tr0_A Guanylate kinase, GMP k 98.0 3.4E-06 1.2E-10 45.7 2.9 22 14-35 9-30 (205)
189 1z6g_A Guanylate kinase; struc 98.0 3.3E-06 1.1E-10 46.8 2.8 23 14-36 25-47 (218)
190 3mca_A HBS1, elongation factor 98.0 6E-06 2.1E-10 51.8 4.2 26 9-34 174-199 (592)
191 2dy1_A Elongation factor G; tr 98.0 3.8E-06 1.3E-10 53.3 3.3 28 9-36 6-33 (665)
192 1vpl_A ABC transporter, ATP-bi 98.0 3.7E-06 1.3E-10 47.9 3.0 26 14-39 43-68 (256)
193 2ixe_A Antigen peptide transpo 98.0 4E-06 1.4E-10 48.1 3.1 26 14-39 47-72 (271)
194 1tq4_A IIGP1, interferon-induc 98.0 5.9E-06 2E-10 50.0 3.8 33 13-45 70-102 (413)
195 3fvq_A Fe(3+) IONS import ATP- 98.0 3.3E-06 1.1E-10 50.3 2.6 28 14-41 32-59 (359)
196 2cbz_A Multidrug resistance-as 98.0 3.3E-06 1.1E-10 47.5 2.4 25 14-38 33-57 (237)
197 2qag_B Septin-6, protein NEDD5 98.0 3.7E-06 1.3E-10 51.2 2.7 26 12-37 42-67 (427)
198 2yz2_A Putative ABC transporte 98.0 4.8E-06 1.6E-10 47.6 2.9 26 14-39 35-60 (266)
199 1dar_A EF-G, elongation factor 98.0 1.6E-05 5.3E-10 50.7 5.5 34 1-34 1-34 (691)
200 2pjz_A Hypothetical protein ST 98.0 5.3E-06 1.8E-10 47.5 3.1 27 14-41 32-58 (263)
201 1z47_A CYSA, putative ABC-tran 98.0 4.6E-06 1.6E-10 49.7 2.9 28 14-41 43-70 (355)
202 2qpt_A EH domain-containing pr 98.0 1.1E-05 3.6E-10 50.3 4.6 30 9-38 62-91 (550)
203 1ex7_A Guanylate kinase; subst 98.0 5.7E-06 1.9E-10 45.3 3.0 20 15-34 4-23 (186)
204 3rlf_A Maltose/maltodextrin im 98.0 4.8E-06 1.6E-10 50.0 2.9 28 14-41 31-58 (381)
205 1zp6_A Hypothetical protein AT 98.0 4.9E-06 1.7E-10 44.7 2.7 23 13-35 10-32 (191)
206 2it1_A 362AA long hypothetical 98.0 5E-06 1.7E-10 49.6 2.9 27 14-40 31-57 (362)
207 4a9a_A Ribosome-interacting GT 98.0 3E-05 1E-09 46.5 6.2 50 12-61 72-121 (376)
208 3ney_A 55 kDa erythrocyte memb 98.0 5.8E-06 2E-10 45.7 2.9 23 13-35 20-42 (197)
209 1g29_1 MALK, maltose transport 97.9 5.3E-06 1.8E-10 49.6 2.9 28 14-41 31-58 (372)
210 2yyz_A Sugar ABC transporter, 97.9 5.3E-06 1.8E-10 49.4 2.9 27 14-40 31-57 (359)
211 1kk1_A EIF2gamma; initiation o 97.9 2.6E-05 8.8E-10 46.8 5.8 46 9-54 7-57 (410)
212 3d31_A Sulfate/molybdate ABC t 97.9 4.4E-06 1.5E-10 49.6 2.4 27 14-40 28-54 (348)
213 1v43_A Sugar-binding transport 97.9 5.7E-06 1.9E-10 49.5 2.9 27 14-40 39-65 (372)
214 3sjy_A Translation initiation 97.9 1.3E-05 4.4E-10 48.0 4.4 28 9-36 5-32 (403)
215 3p26_A Elongation factor 1 alp 97.9 9.1E-06 3.1E-10 49.7 3.8 25 11-35 32-56 (483)
216 4gp7_A Metallophosphoesterase; 97.9 6.6E-06 2.3E-10 44.0 2.8 19 14-32 11-29 (171)
217 3nh6_A ATP-binding cassette SU 97.9 5.8E-06 2E-10 48.3 2.7 26 14-39 82-107 (306)
218 3tau_A Guanylate kinase, GMP k 97.9 7.3E-06 2.5E-10 45.0 3.0 23 14-36 10-32 (208)
219 2qi9_C Vitamin B12 import ATP- 97.9 7.9E-06 2.7E-10 46.4 3.1 24 14-37 28-51 (249)
220 3tui_C Methionine import ATP-b 97.9 7.4E-06 2.5E-10 49.0 3.1 26 14-39 56-81 (366)
221 1u0l_A Probable GTPase ENGC; p 97.9 8.9E-06 3E-10 47.1 3.3 29 14-42 171-199 (301)
222 3c8u_A Fructokinase; YP_612366 97.9 6.8E-06 2.3E-10 45.0 2.6 25 11-35 21-45 (208)
223 2nq2_C Hypothetical ABC transp 97.9 9.4E-06 3.2E-10 46.1 3.2 26 14-39 33-58 (253)
224 1puj_A YLQF, conserved hypothe 97.9 1E-05 3.5E-10 46.6 3.3 26 11-36 119-144 (282)
225 1oxx_K GLCV, glucose, ABC tran 97.9 4.2E-06 1.4E-10 49.7 1.7 28 14-41 33-60 (353)
226 2zu0_C Probable ATP-dependent 97.9 1E-05 3.6E-10 46.2 3.3 22 14-35 48-69 (267)
227 2d2e_A SUFC protein; ABC-ATPas 97.9 9.1E-06 3.1E-10 46.0 3.0 22 14-35 31-52 (250)
228 2rcn_A Probable GTPase ENGC; Y 97.9 1.6E-05 5.4E-10 47.4 4.1 24 14-37 217-240 (358)
229 2ghi_A Transport protein; mult 97.9 1.1E-05 3.7E-10 46.0 3.1 23 14-36 48-70 (260)
230 2i3b_A HCR-ntpase, human cance 97.9 9.9E-06 3.4E-10 44.3 2.8 23 14-36 3-25 (189)
231 1lw7_A Transcriptional regulat 97.9 1.2E-05 4.1E-10 47.5 3.2 25 12-36 170-194 (365)
232 2yv5_A YJEQ protein; hydrolase 97.8 2E-05 6.7E-10 45.7 3.9 29 14-43 167-195 (302)
233 2bbs_A Cystic fibrosis transme 97.8 7.4E-06 2.5E-10 47.5 2.1 25 14-38 66-90 (290)
234 2dby_A GTP-binding protein; GD 97.8 9.1E-06 3.1E-10 48.5 2.6 24 13-36 2-25 (368)
235 2bdt_A BH3686; alpha-beta prot 97.8 1.3E-05 4.5E-10 43.1 2.8 21 14-34 4-24 (189)
236 2ehv_A Hypothetical protein PH 97.8 1.5E-05 5E-10 44.2 3.0 20 14-33 32-51 (251)
237 1udx_A The GTP-binding protein 97.8 1.8E-05 6E-10 48.0 3.5 23 14-36 159-181 (416)
238 2j41_A Guanylate kinase; GMP, 97.8 1.4E-05 4.7E-10 43.3 2.8 24 13-36 7-30 (207)
239 2bbw_A Adenylate kinase 4, AK4 97.8 1.8E-05 6.1E-10 44.3 3.3 21 13-33 28-48 (246)
240 2j69_A Bacterial dynamin-like 97.8 2.4E-05 8.4E-10 49.9 4.3 27 11-37 68-94 (695)
241 3b85_A Phosphate starvation-in 97.8 9.1E-06 3.1E-10 45.0 2.1 29 14-43 24-52 (208)
242 1kag_A SKI, shikimate kinase I 97.8 1.6E-05 5.5E-10 42.0 2.9 22 13-34 5-26 (173)
243 2gza_A Type IV secretion syste 97.8 2E-05 6.7E-10 46.8 3.5 32 14-45 177-208 (361)
244 2qor_A Guanylate kinase; phosp 97.8 1.6E-05 5.3E-10 43.4 2.9 22 13-34 13-34 (204)
245 3szr_A Interferon-induced GTP- 97.8 1E-05 3.5E-10 50.9 2.4 33 13-45 46-79 (608)
246 3asz_A Uridine kinase; cytidin 97.8 1.5E-05 5.1E-10 43.4 2.8 23 13-35 7-29 (211)
247 4eun_A Thermoresistant glucoki 97.8 1.6E-05 5.5E-10 43.2 2.9 22 13-34 30-51 (200)
248 4a74_A DNA repair and recombin 97.8 1.4E-05 4.6E-10 43.9 2.6 22 14-35 27-48 (231)
249 2www_A Methylmalonic aciduria 97.8 2E-05 6.7E-10 46.6 3.3 23 12-34 74-96 (349)
250 2pt7_A CAG-ALFA; ATPase, prote 97.8 2E-05 7E-10 46.3 3.2 32 14-45 173-204 (330)
251 3lnc_A Guanylate kinase, GMP k 97.8 1E-05 3.6E-10 44.8 1.8 22 14-35 29-51 (231)
252 3kb2_A SPBC2 prophage-derived 97.8 2.2E-05 7.5E-10 41.3 3.0 21 14-34 3-23 (173)
253 2eyu_A Twitching motility prot 97.8 1.8E-05 6.3E-10 45.1 2.8 23 14-36 27-49 (261)
254 1via_A Shikimate kinase; struc 97.7 2.2E-05 7.5E-10 41.8 2.8 21 14-34 6-26 (175)
255 3ec2_A DNA replication protein 97.7 1.6E-05 5.6E-10 42.4 2.4 24 13-36 39-62 (180)
256 2v9p_A Replication protein E1; 97.7 2.2E-05 7.6E-10 45.9 3.0 22 14-35 128-149 (305)
257 3b5x_A Lipid A export ATP-bind 97.7 3.2E-05 1.1E-09 48.3 3.8 31 14-44 371-401 (582)
258 1t9h_A YLOQ, probable GTPase E 97.7 6.9E-06 2.3E-10 48.0 0.8 26 14-39 175-200 (307)
259 1rj9_A FTSY, signal recognitio 97.7 1.7E-05 5.8E-10 46.2 2.4 25 13-37 103-127 (304)
260 3aez_A Pantothenate kinase; tr 97.7 2.2E-05 7.4E-10 45.9 2.9 25 11-35 89-113 (312)
261 3uie_A Adenylyl-sulfate kinase 97.7 2.4E-05 8.1E-10 42.6 2.8 23 13-35 26-48 (200)
262 1zo1_I IF2, translation initia 97.7 1.6E-06 5.6E-11 53.5 -2.0 30 11-40 3-32 (501)
263 2if2_A Dephospho-COA kinase; a 97.7 2.6E-05 8.8E-10 42.3 2.8 22 13-34 2-23 (204)
264 1yqt_A RNAse L inhibitor; ATP- 97.7 4.5E-05 1.6E-09 47.4 4.1 28 14-41 49-76 (538)
265 3vaa_A Shikimate kinase, SK; s 97.7 3.2E-05 1.1E-09 42.0 3.1 22 13-34 26-47 (199)
266 3gd7_A Fusion complex of cysti 97.7 2.8E-05 9.6E-10 46.8 2.9 23 14-36 49-71 (390)
267 1knq_A Gluconate kinase; ALFA/ 97.7 3.1E-05 1E-09 41.1 2.8 22 13-34 9-30 (175)
268 1zun_B Sulfate adenylate trans 97.7 6.3E-05 2.1E-09 45.5 4.4 28 9-36 21-48 (434)
269 3t61_A Gluconokinase; PSI-biol 97.7 3.2E-05 1.1E-09 42.0 2.8 22 13-34 19-40 (202)
270 3b60_A Lipid A export ATP-bind 97.7 2.6E-05 9E-10 48.6 2.7 26 14-39 371-396 (582)
271 3b9q_A Chloroplast SRP recepto 97.7 3.1E-05 1.1E-09 45.1 2.9 24 13-36 101-124 (302)
272 1cke_A CK, MSSA, protein (cyti 97.7 3.9E-05 1.3E-09 42.1 3.1 22 13-34 6-27 (227)
273 1qhx_A CPT, protein (chloramph 97.6 3.8E-05 1.3E-09 40.7 2.9 21 14-34 5-25 (178)
274 2f1r_A Molybdopterin-guanine d 97.6 1.8E-05 6.2E-10 42.7 1.6 22 14-35 4-25 (171)
275 3euj_A Chromosome partition pr 97.6 3.3E-05 1.1E-09 47.7 2.8 23 14-36 31-53 (483)
276 1nks_A Adenylate kinase; therm 97.6 4.2E-05 1.4E-09 40.8 3.0 22 13-34 2-23 (194)
277 1jjv_A Dephospho-COA kinase; P 97.6 5.2E-05 1.8E-09 41.2 3.4 22 13-34 3-24 (206)
278 3e70_C DPA, signal recognition 97.6 2.4E-05 8.2E-10 46.1 2.1 27 12-38 129-155 (328)
279 2jeo_A Uridine-cytidine kinase 97.6 3.8E-05 1.3E-09 43.0 2.8 22 13-34 26-47 (245)
280 3fb4_A Adenylate kinase; psych 97.6 4.4E-05 1.5E-09 41.7 3.0 22 13-34 1-22 (216)
281 3izq_1 HBS1P, elongation facto 97.6 5.3E-05 1.8E-09 47.8 3.7 26 10-35 165-190 (611)
282 2jaq_A Deoxyguanosine kinase; 97.6 4.8E-05 1.6E-09 41.0 3.1 21 14-34 2-22 (205)
283 1ixz_A ATP-dependent metallopr 97.6 4.2E-05 1.4E-09 42.8 2.9 21 15-35 52-72 (254)
284 1n0u_A EF-2, elongation factor 97.6 9.8E-05 3.4E-09 48.1 4.9 27 9-35 16-42 (842)
285 3ozx_A RNAse L inhibitor; ATP 97.6 6.3E-05 2.2E-09 46.8 3.9 28 14-41 27-54 (538)
286 3j16_B RLI1P; ribosome recycli 97.6 6.4E-05 2.2E-09 47.5 3.9 28 14-41 105-132 (608)
287 3dl0_A Adenylate kinase; phosp 97.6 5.3E-05 1.8E-09 41.4 3.2 22 13-34 1-22 (216)
288 2qm8_A GTPase/ATPase; G protei 97.6 4.8E-05 1.6E-09 44.8 3.1 23 12-34 55-77 (337)
289 1np6_A Molybdopterin-guanine d 97.6 4.8E-05 1.6E-09 41.1 2.9 23 13-35 7-29 (174)
290 1ly1_A Polynucleotide kinase; 97.6 5.3E-05 1.8E-09 40.0 3.0 22 13-34 3-24 (181)
291 1jbk_A CLPB protein; beta barr 97.6 4.8E-05 1.7E-09 40.1 2.9 23 13-35 44-66 (195)
292 3lw7_A Adenylate kinase relate 97.6 5.6E-05 1.9E-09 39.5 3.1 20 13-32 2-21 (179)
293 3tqc_A Pantothenate kinase; bi 97.6 8.3E-05 2.8E-09 43.7 3.9 25 10-34 90-114 (321)
294 2w0m_A SSO2452; RECA, SSPF, un 97.6 5.1E-05 1.8E-09 41.4 2.8 21 14-34 25-45 (235)
295 2x8a_A Nuclear valosin-contain 97.6 5E-05 1.7E-09 43.5 2.8 21 15-35 47-67 (274)
296 3bk7_A ABC transporter ATP-bin 97.6 8.3E-05 2.8E-09 46.9 4.0 28 14-41 119-146 (607)
297 3kta_A Chromosome segregation 97.6 5.2E-05 1.8E-09 40.4 2.7 21 14-34 28-48 (182)
298 2yl4_A ATP-binding cassette SU 97.6 2.8E-05 9.6E-10 48.6 1.8 26 14-39 372-397 (595)
299 2npi_A Protein CLP1; CLP1-PCF1 97.5 4.1E-05 1.4E-09 46.9 2.4 25 14-38 140-164 (460)
300 1ukz_A Uridylate kinase; trans 97.5 0.0001 3.4E-09 39.9 3.8 25 10-34 13-37 (203)
301 2vp4_A Deoxynucleoside kinase; 97.5 7.3E-05 2.5E-09 41.5 3.3 25 11-35 19-43 (230)
302 2og2_A Putative signal recogni 97.5 5.4E-05 1.9E-09 45.1 2.9 24 13-36 158-181 (359)
303 2oap_1 GSPE-2, type II secreti 97.5 6.6E-05 2.2E-09 46.5 3.3 32 14-45 262-293 (511)
304 3avx_A Elongation factor TS, e 97.5 4.5E-05 1.5E-09 51.5 2.7 27 9-35 293-319 (1289)
305 2qt1_A Nicotinamide riboside k 97.5 9.1E-05 3.1E-09 40.3 3.5 24 12-35 21-44 (207)
306 1yqt_A RNAse L inhibitor; ATP- 97.5 0.00011 3.7E-09 45.8 4.2 30 14-43 314-343 (538)
307 3jvv_A Twitching mobility prot 97.5 5.6E-05 1.9E-09 44.9 2.8 22 14-35 125-146 (356)
308 2kjq_A DNAA-related protein; s 97.5 3.2E-05 1.1E-09 40.7 1.6 22 14-35 38-59 (149)
309 3trf_A Shikimate kinase, SK; a 97.5 7.9E-05 2.7E-09 39.8 3.2 22 13-34 6-27 (185)
310 3bk7_A ABC transporter ATP-bin 97.5 0.00011 3.7E-09 46.4 4.2 30 14-43 384-413 (607)
311 1kht_A Adenylate kinase; phosp 97.5 7.9E-05 2.7E-09 39.7 3.2 22 13-34 4-25 (192)
312 1iy2_A ATP-dependent metallopr 97.5 6.3E-05 2.1E-09 42.8 2.9 22 14-35 75-96 (278)
313 4e22_A Cytidylate kinase; P-lo 97.5 6.2E-05 2.1E-09 42.5 2.9 21 13-33 28-48 (252)
314 1f60_A Elongation factor EEF1A 97.5 9.1E-05 3.1E-09 45.2 3.7 26 10-35 5-30 (458)
315 1jny_A EF-1-alpha, elongation 97.5 7E-05 2.4E-09 45.3 3.2 25 11-35 5-29 (435)
316 1in4_A RUVB, holliday junction 97.5 6E-05 2.1E-09 44.1 2.9 22 14-35 53-74 (334)
317 3qf4_B Uncharacterized ABC tra 97.5 3.6E-05 1.2E-09 48.3 2.0 27 14-40 383-409 (598)
318 4a82_A Cystic fibrosis transme 97.5 3E-05 1E-09 48.4 1.6 26 14-39 369-394 (578)
319 2c78_A Elongation factor TU-A; 97.5 8.6E-05 2.9E-09 44.5 3.5 26 9-34 8-33 (405)
320 2obl_A ESCN; ATPase, hydrolase 97.5 6.1E-05 2.1E-09 44.6 2.8 24 14-37 73-96 (347)
321 1sq5_A Pantothenate kinase; P- 97.5 5.6E-05 1.9E-09 43.9 2.6 24 12-35 80-103 (308)
322 2yhs_A FTSY, cell division pro 97.5 6.3E-05 2.2E-09 46.7 2.9 24 13-36 294-317 (503)
323 1odf_A YGR205W, hypothetical 3 97.5 0.0001 3.5E-09 42.7 3.6 25 10-34 29-53 (290)
324 1nij_A Hypothetical protein YJ 97.5 7E-05 2.4E-09 43.6 2.9 24 13-36 5-28 (318)
325 3qf4_A ABC transporter, ATP-bi 97.5 4.7E-05 1.6E-09 47.7 2.2 26 14-39 371-396 (587)
326 3ozx_A RNAse L inhibitor; ATP 97.5 0.00012 4.2E-09 45.6 4.0 29 14-42 296-324 (538)
327 3iij_A Coilin-interacting nucl 97.5 0.0001 3.5E-09 39.3 3.2 23 12-34 11-33 (180)
328 3cm0_A Adenylate kinase; ATP-b 97.5 0.00011 3.8E-09 39.1 3.4 22 13-34 5-26 (186)
329 2dpy_A FLII, flagellum-specifi 97.5 7.6E-05 2.6E-09 45.4 2.8 24 14-37 159-182 (438)
330 2ewv_A Twitching motility prot 97.5 7.6E-05 2.6E-09 44.5 2.8 22 14-35 138-159 (372)
331 1d2e_A Elongation factor TU (E 97.5 0.00011 3.9E-09 43.9 3.5 24 12-35 3-26 (397)
332 3cb4_D GTP-binding protein LEP 97.5 7.5E-05 2.6E-09 47.1 2.8 24 11-34 3-26 (599)
333 1cr0_A DNA primase/helicase; R 97.4 7.6E-05 2.6E-09 42.7 2.6 24 14-37 37-60 (296)
334 3tlx_A Adenylate kinase 2; str 97.4 0.00012 4.3E-09 41.0 3.4 24 11-34 28-51 (243)
335 1r5b_A Eukaryotic peptide chai 97.4 0.00019 6.6E-09 43.8 4.4 25 10-34 41-65 (467)
336 1n0w_A DNA repair protein RAD5 97.4 9.7E-05 3.3E-09 40.8 2.9 22 14-35 26-47 (243)
337 1g7s_A Translation initiation 97.4 9.7E-05 3.3E-09 46.5 3.2 27 12-38 5-31 (594)
338 2p65_A Hypothetical protein PF 97.4 6.3E-05 2.2E-09 39.6 2.1 22 13-34 44-65 (187)
339 2rhm_A Putative kinase; P-loop 97.4 9.1E-05 3.1E-09 39.6 2.7 22 13-34 6-27 (193)
340 3d3q_A TRNA delta(2)-isopenten 97.4 0.00014 4.6E-09 43.2 3.6 22 13-34 8-29 (340)
341 2cdn_A Adenylate kinase; phosp 97.4 0.00014 4.8E-09 39.4 3.4 24 11-34 19-42 (201)
342 1rz3_A Hypothetical protein rb 97.4 8.7E-05 3E-09 40.4 2.6 23 12-34 22-44 (201)
343 3bos_A Putative DNA replicatio 97.4 9.9E-05 3.4E-09 40.4 2.8 22 13-34 53-74 (242)
344 1f5n_A Interferon-induced guan 97.4 0.00012 4.2E-09 46.2 3.5 26 11-36 37-62 (592)
345 1lv7_A FTSH; alpha/beta domain 97.4 0.0001 3.5E-09 41.3 2.9 22 13-34 46-67 (257)
346 1uj2_A Uridine-cytidine kinase 97.4 0.00014 4.6E-09 40.9 3.4 25 10-34 20-44 (252)
347 3sr0_A Adenylate kinase; phosp 97.4 0.00012 4.2E-09 40.5 3.0 22 13-34 1-22 (206)
348 2ze6_A Isopentenyl transferase 97.4 0.00011 3.7E-09 41.6 2.9 21 14-34 3-23 (253)
349 2plr_A DTMP kinase, probable t 97.4 0.00014 4.9E-09 39.3 3.3 22 13-34 5-26 (213)
350 2cvh_A DNA repair and recombin 97.4 0.00011 3.8E-09 39.9 2.8 21 14-34 22-42 (220)
351 1e4v_A Adenylate kinase; trans 97.4 0.00011 3.9E-09 40.2 2.9 21 14-34 2-22 (214)
352 1ak2_A Adenylate kinase isoenz 97.4 0.00014 4.8E-09 40.4 3.3 24 11-34 15-38 (233)
353 1aky_A Adenylate kinase; ATP:A 97.4 0.00015 5E-09 39.9 3.2 23 12-34 4-26 (220)
354 3p32_A Probable GTPase RV1496/ 97.4 0.00015 5.1E-09 42.8 3.4 24 11-34 78-101 (355)
355 1zcb_A G alpha I/13; GTP-bindi 97.4 0.00015 5E-09 43.3 3.3 24 10-33 31-54 (362)
356 2w58_A DNAI, primosome compone 97.4 0.00013 4.4E-09 39.4 2.8 22 13-34 55-76 (202)
357 1zd8_A GTP:AMP phosphotransfer 97.4 0.00013 4.5E-09 40.3 2.9 23 12-34 7-29 (227)
358 3j16_B RLI1P; ribosome recycli 97.4 0.00018 6.1E-09 45.5 3.8 27 15-41 381-407 (608)
359 1gvn_B Zeta; postsegregational 97.4 0.00015 5.1E-09 41.8 3.2 23 12-34 33-55 (287)
360 2pt5_A Shikimate kinase, SK; a 97.4 0.00016 5.5E-09 37.9 3.1 21 14-34 2-22 (168)
361 1y63_A LMAJ004144AAA protein; 97.4 0.00016 5.3E-09 38.9 3.1 23 13-35 11-33 (184)
362 1p9r_A General secretion pathw 97.4 0.00012 4.1E-09 44.4 2.8 23 14-36 169-191 (418)
363 2v54_A DTMP kinase, thymidylat 97.4 0.00016 5.5E-09 39.0 3.1 23 13-35 5-27 (204)
364 1njg_A DNA polymerase III subu 97.4 0.00014 4.6E-09 39.5 2.8 21 14-34 47-67 (250)
365 1zak_A Adenylate kinase; ATP:A 97.4 0.00012 4E-09 40.3 2.5 22 13-34 6-27 (222)
366 1uf9_A TT1252 protein; P-loop, 97.3 0.00017 5.8E-09 38.8 3.1 24 12-35 8-31 (203)
367 1xjc_A MOBB protein homolog; s 97.3 0.00018 6.1E-09 38.8 3.1 23 12-34 4-26 (169)
368 2chg_A Replication factor C sm 97.3 0.00015 5.3E-09 38.9 2.8 21 14-34 40-60 (226)
369 2z0h_A DTMP kinase, thymidylat 97.3 0.00018 6E-09 38.6 3.0 21 14-34 2-22 (197)
370 1tev_A UMP-CMP kinase; ploop, 97.3 0.00022 7.5E-09 38.0 3.4 22 13-34 4-25 (196)
371 2yvu_A Probable adenylyl-sulfa 97.3 0.00027 9.1E-09 37.8 3.7 23 12-34 13-35 (186)
372 2xb4_A Adenylate kinase; ATP-b 97.3 0.0002 6.7E-09 39.6 3.2 21 14-34 2-22 (223)
373 1gtv_A TMK, thymidylate kinase 97.3 4.8E-05 1.6E-09 41.4 0.6 21 14-34 2-22 (214)
374 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00021 7.1E-09 37.5 3.0 20 14-33 25-44 (149)
375 2xtz_A Guanine nucleotide-bind 97.3 0.00034 1.2E-08 41.6 4.1 25 9-33 6-30 (354)
376 2xex_A Elongation factor G; GT 97.3 0.00022 7.4E-09 45.6 3.5 26 9-34 7-32 (693)
377 2h5e_A Peptide chain release f 97.3 0.0002 6.7E-09 44.6 3.2 25 10-34 11-35 (529)
378 3nwj_A ATSK2; P loop, shikimat 97.3 0.00017 5.8E-09 41.0 2.7 22 13-34 49-70 (250)
379 2pez_A Bifunctional 3'-phospho 97.3 0.00021 7E-09 38.1 2.9 22 13-34 6-27 (179)
380 2grj_A Dephospho-COA kinase; T 97.3 0.00029 9.8E-09 38.5 3.5 28 8-35 8-35 (192)
381 2iw3_A Elongation factor 3A; a 97.3 0.00012 4.2E-09 48.5 2.4 27 14-40 701-727 (986)
382 3tr5_A RF-3, peptide chain rel 97.3 0.00022 7.6E-09 44.3 3.3 24 10-33 11-34 (528)
383 2wwf_A Thymidilate kinase, put 97.3 0.0003 1E-08 38.1 3.5 22 13-34 11-32 (212)
384 3h4m_A Proteasome-activating n 97.3 0.00019 6.6E-09 40.6 2.8 22 13-34 52-73 (285)
385 2pbr_A DTMP kinase, thymidylat 97.3 0.00023 8E-09 37.9 3.0 21 14-34 2-22 (195)
386 3qf7_A RAD50; ABC-ATPase, ATPa 97.3 0.00021 7.1E-09 42.5 3.0 19 15-33 26-44 (365)
387 2bwj_A Adenylate kinase 5; pho 97.3 0.00021 7.2E-09 38.3 2.8 22 13-34 13-34 (199)
388 3b9p_A CG5977-PA, isoform A; A 97.3 0.00019 6.6E-09 40.9 2.8 23 12-34 54-76 (297)
389 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.00022 7.4E-09 39.8 2.9 22 13-34 40-61 (262)
390 2c95_A Adenylate kinase 1; tra 97.3 0.00023 7.8E-09 38.1 2.9 22 13-34 10-31 (196)
391 2elf_A Protein translation elo 97.3 0.00017 5.7E-09 43.0 2.6 20 14-33 23-42 (370)
392 1q3t_A Cytidylate kinase; nucl 97.3 0.00025 8.5E-09 39.5 3.1 27 8-34 12-38 (236)
393 1e6c_A Shikimate kinase; phosp 97.3 0.00024 8.1E-09 37.4 2.9 22 13-34 3-24 (173)
394 1qf9_A UMP/CMP kinase, protein 97.2 0.00031 1.1E-08 37.4 3.4 22 13-34 7-28 (194)
395 1yrb_A ATP(GTP)binding protein 97.2 0.00049 1.7E-08 38.4 4.3 26 8-33 10-35 (262)
396 3ec1_A YQEH GTPase; atnos1, at 97.2 0.00019 6.6E-09 42.7 2.8 23 13-35 163-185 (369)
397 2qby_A CDC6 homolog 1, cell di 97.2 0.00018 6.3E-09 41.8 2.6 23 13-35 46-68 (386)
398 1nlf_A Regulatory protein REPA 97.2 0.00019 6.4E-09 40.9 2.6 21 14-34 32-52 (279)
399 1l8q_A Chromosomal replication 97.2 0.00022 7.4E-09 41.3 2.8 22 14-35 39-60 (324)
400 1sxj_E Activator 1 40 kDa subu 97.2 0.00017 5.8E-09 41.9 2.3 20 15-34 39-58 (354)
401 3be4_A Adenylate kinase; malar 97.2 0.00023 7.8E-09 39.1 2.7 23 12-34 5-27 (217)
402 1vht_A Dephospho-COA kinase; s 97.2 0.00033 1.1E-08 38.3 3.3 22 13-34 5-26 (218)
403 2p5t_B PEZT; postsegregational 97.2 0.00018 6.2E-09 40.5 2.3 24 11-34 31-54 (253)
404 3n70_A Transport activator; si 97.2 0.00048 1.6E-08 35.7 3.7 24 13-36 25-48 (145)
405 1nn5_A Similar to deoxythymidy 97.2 0.00028 9.4E-09 38.3 2.9 22 13-34 10-31 (215)
406 1m7g_A Adenylylsulfate kinase; 97.2 0.00028 9.4E-09 38.6 2.8 22 13-34 26-47 (211)
407 2f6r_A COA synthase, bifunctio 97.2 0.00036 1.2E-08 40.0 3.4 25 10-34 73-97 (281)
408 1fnn_A CDC6P, cell division co 97.2 0.00026 9E-09 41.3 2.9 22 14-35 46-67 (389)
409 4f4c_A Multidrug resistance pr 97.2 0.00014 5E-09 49.2 1.9 29 14-42 1107-1135(1321)
410 2dr3_A UPF0273 protein PH0284; 97.2 0.00026 9E-09 39.0 2.7 21 14-34 25-45 (247)
411 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00038 1.3E-08 39.4 3.4 22 13-34 5-26 (260)
412 3zvr_A Dynamin-1; hydrolase, D 97.2 0.00028 9.5E-09 45.8 3.1 28 10-37 49-76 (772)
413 1bif_A 6-phosphofructo-2-kinas 97.2 0.00036 1.2E-08 42.6 3.4 25 11-35 38-62 (469)
414 3umf_A Adenylate kinase; rossm 97.2 0.00044 1.5E-08 38.6 3.5 20 15-34 32-51 (217)
415 4fid_A G protein alpha subunit 97.2 0.0003 1E-08 41.7 3.0 23 10-32 3-25 (340)
416 2iyv_A Shikimate kinase, SK; t 97.2 0.00033 1.1E-08 37.3 3.0 21 14-34 4-24 (184)
417 3cf0_A Transitional endoplasmi 97.2 0.00028 9.4E-09 40.7 2.8 22 13-34 50-71 (301)
418 3g5u_A MCG1178, multidrug resi 97.2 0.00022 7.6E-09 48.2 2.6 26 14-39 418-443 (1284)
419 3r20_A Cytidylate kinase; stru 97.2 0.00037 1.3E-08 39.3 3.2 22 12-33 9-30 (233)
420 2p67_A LAO/AO transport system 97.2 0.00031 1.1E-08 41.3 3.0 23 12-34 56-78 (341)
421 4eaq_A DTMP kinase, thymidylat 97.2 0.00031 1.1E-08 39.2 2.9 24 12-35 26-49 (229)
422 3crm_A TRNA delta(2)-isopenten 97.2 0.00045 1.5E-08 40.8 3.6 22 13-34 6-27 (323)
423 1ofh_A ATP-dependent HSL prote 97.2 0.00031 1.1E-08 39.9 2.9 22 13-34 51-72 (310)
424 2vli_A Antibiotic resistance p 97.1 0.00021 7.2E-09 37.9 2.1 22 13-34 6-27 (183)
425 2qen_A Walker-type ATPase; unk 97.1 0.00031 1.1E-08 40.4 2.9 22 14-35 33-54 (350)
426 1qhl_A Protein (cell division 97.1 6.9E-05 2.4E-09 42.1 0.1 23 15-37 30-52 (227)
427 3ohm_A Guanine nucleotide-bind 97.1 0.00044 1.5E-08 40.8 3.5 24 9-32 4-27 (327)
428 2px0_A Flagellar biosynthesis 97.1 0.00027 9.2E-09 41.0 2.6 23 13-35 106-128 (296)
429 1sxj_C Activator 1 40 kDa subu 97.1 0.0003 1E-08 41.0 2.8 21 15-35 49-69 (340)
430 3syl_A Protein CBBX; photosynt 97.1 0.00028 9.6E-09 40.3 2.6 23 12-34 67-89 (309)
431 3h2y_A GTPase family protein; 97.1 0.00022 7.6E-09 42.4 2.2 23 13-35 161-183 (368)
432 4fcw_A Chaperone protein CLPB; 97.1 0.00033 1.1E-08 40.0 2.9 23 13-35 48-70 (311)
433 1d2n_A N-ethylmaleimide-sensit 97.1 0.00033 1.1E-08 39.6 2.8 23 12-34 64-86 (272)
434 1svm_A Large T antigen; AAA+ f 97.1 0.00033 1.1E-08 42.0 2.8 21 14-34 171-191 (377)
435 4f4c_A Multidrug resistance pr 97.1 0.00026 9E-09 47.9 2.6 27 14-40 446-472 (1321)
436 2iw3_A Elongation factor 3A; a 97.1 0.00038 1.3E-08 46.2 3.3 23 14-36 463-485 (986)
437 2fna_A Conserved hypothetical 97.1 0.0003 1E-08 40.5 2.6 21 14-34 32-52 (357)
438 1vma_A Cell division protein F 97.1 0.00036 1.2E-08 40.7 2.9 23 13-35 105-127 (306)
439 3t15_A Ribulose bisphosphate c 97.1 0.00033 1.1E-08 40.3 2.6 23 12-34 36-58 (293)
440 2rdo_7 EF-G, elongation factor 97.1 0.00058 2E-08 43.7 3.9 27 8-34 6-32 (704)
441 1ltq_A Polynucleotide kinase; 97.1 0.00043 1.5E-08 39.5 3.0 22 13-34 3-24 (301)
442 1tf7_A KAIC; homohexamer, hexa 97.1 0.00033 1.1E-08 43.2 2.7 19 14-32 41-59 (525)
443 1pzn_A RAD51, DNA repair and r 97.1 0.00034 1.2E-08 41.4 2.6 22 14-35 133-154 (349)
444 3g5u_A MCG1178, multidrug resi 97.1 0.00036 1.2E-08 47.2 2.8 26 14-39 1061-1086(1284)
445 3qks_A DNA double-strand break 97.0 0.00051 1.8E-08 37.6 3.0 20 14-33 25-44 (203)
446 1cip_A Protein (guanine nucleo 97.0 0.00058 2E-08 40.6 3.4 24 10-33 30-53 (353)
447 2v1u_A Cell division control p 97.0 0.00035 1.2E-08 40.7 2.4 23 12-34 44-66 (387)
448 3cr8_A Sulfate adenylyltranfer 97.0 0.00027 9.4E-09 44.2 2.1 23 13-35 370-392 (552)
449 1sxj_D Activator 1 41 kDa subu 97.0 0.00046 1.6E-08 39.9 2.8 21 15-35 61-81 (353)
450 3pfi_A Holliday junction ATP-d 97.0 0.00047 1.6E-08 39.9 2.8 22 13-34 56-77 (338)
451 3m6a_A ATP-dependent protease 97.0 0.00043 1.5E-08 43.0 2.8 21 14-34 110-130 (543)
452 1zuh_A Shikimate kinase; alpha 97.0 0.00058 2E-08 35.9 2.9 23 12-34 7-29 (168)
453 3uk6_A RUVB-like 2; hexameric 97.0 0.00043 1.5E-08 40.4 2.6 21 14-34 72-92 (368)
454 3a8t_A Adenylate isopentenyltr 97.0 0.00059 2E-08 40.5 3.1 22 14-35 42-63 (339)
455 2qmh_A HPR kinase/phosphorylas 97.0 0.00055 1.9E-08 38.1 2.8 23 13-35 35-57 (205)
456 3exa_A TRNA delta(2)-isopenten 97.0 0.00058 2E-08 40.3 3.0 22 14-35 5-26 (322)
457 2bjv_A PSP operon transcriptio 97.0 0.00062 2.1E-08 38.3 3.0 24 13-36 30-53 (265)
458 2qgz_A Helicase loader, putati 97.0 0.00057 1.9E-08 39.7 2.8 22 13-34 153-174 (308)
459 3zvl_A Bifunctional polynucleo 97.0 0.0006 2.1E-08 41.1 3.0 23 12-34 258-280 (416)
460 1um8_A ATP-dependent CLP prote 97.0 0.00058 2E-08 40.3 2.9 23 12-34 72-94 (376)
461 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.00056 1.9E-08 39.9 2.8 23 13-35 46-68 (322)
462 3pxg_A Negative regulator of g 97.0 0.00051 1.8E-08 41.9 2.7 23 13-35 202-224 (468)
463 2z4s_A Chromosomal replication 96.9 0.00055 1.9E-08 41.6 2.8 21 14-34 132-152 (440)
464 3eie_A Vacuolar protein sortin 96.9 0.00057 1.9E-08 39.7 2.8 23 12-34 51-73 (322)
465 1w1w_A Structural maintenance 96.9 0.00058 2E-08 41.1 2.8 21 14-34 28-48 (430)
466 2qby_B CDC6 homolog 3, cell di 96.9 0.00053 1.8E-08 40.1 2.6 23 13-35 46-68 (384)
467 2r62_A Cell division protease 96.9 0.0002 6.9E-09 40.2 0.8 21 14-34 46-66 (268)
468 3ake_A Cytidylate kinase; CMP 96.9 0.00069 2.4E-08 36.5 2.8 21 14-34 4-24 (208)
469 3lda_A DNA repair protein RAD5 96.9 0.00056 1.9E-08 41.3 2.7 20 14-33 180-199 (400)
470 2o5v_A DNA replication and rep 96.9 0.00072 2.5E-08 40.3 3.0 21 14-34 28-48 (359)
471 4aby_A DNA repair protein RECN 96.9 0.00017 5.9E-09 42.9 0.4 20 14-33 62-81 (415)
472 3foz_A TRNA delta(2)-isopenten 96.9 0.00096 3.3E-08 39.3 3.5 22 13-34 11-32 (316)
473 2r44_A Uncharacterized protein 96.9 0.00057 1.9E-08 39.6 2.5 21 14-34 48-68 (331)
474 3d8b_A Fidgetin-like protein 1 96.9 0.0007 2.4E-08 39.9 2.9 23 12-34 117-139 (357)
475 2ywe_A GTP-binding protein LEP 96.9 0.00079 2.7E-08 42.6 3.2 25 10-34 4-28 (600)
476 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00066 2.3E-08 42.1 2.8 22 14-35 66-87 (499)
477 3qkt_A DNA double-strand break 96.9 0.00079 2.7E-08 39.5 3.0 19 15-33 26-44 (339)
478 3hws_A ATP-dependent CLP prote 96.9 0.00073 2.5E-08 39.7 2.9 23 12-34 51-73 (363)
479 1tf7_A KAIC; homohexamer, hexa 96.9 0.00063 2.1E-08 42.0 2.6 23 14-36 283-305 (525)
480 1p5z_B DCK, deoxycytidine kina 96.9 0.00054 1.8E-08 38.7 2.1 24 11-34 23-46 (263)
481 1azs_C GS-alpha; complex (lyas 96.9 0.00096 3.3E-08 40.4 3.3 24 10-33 38-61 (402)
482 3ux8_A Excinuclease ABC, A sub 96.9 0.00053 1.8E-08 43.5 2.2 19 14-32 350-368 (670)
483 2qp9_X Vacuolar protein sortin 96.8 0.00078 2.7E-08 39.8 2.8 22 13-34 85-106 (355)
484 3k1j_A LON protease, ATP-depen 96.8 0.00077 2.6E-08 42.3 2.9 23 14-36 62-84 (604)
485 3co5_A Putative two-component 96.8 0.00034 1.2E-08 36.2 1.1 23 13-35 28-50 (143)
486 1e69_A Chromosome segregation 96.8 0.00049 1.7E-08 40.0 1.7 20 14-33 26-45 (322)
487 2ce7_A Cell division protein F 96.8 0.00088 3E-08 41.3 2.9 21 14-34 51-71 (476)
488 3vfd_A Spastin; ATPase, microt 96.8 0.00093 3.2E-08 39.7 2.8 23 12-34 148-170 (389)
489 1hqc_A RUVB; extended AAA-ATPa 96.8 0.00047 1.6E-08 39.6 1.5 22 13-34 39-60 (324)
490 3pvs_A Replication-associated 96.8 0.00093 3.2E-08 40.8 2.8 23 13-35 51-73 (447)
491 3tqf_A HPR(Ser) kinase; transf 96.8 0.0011 3.8E-08 36.2 2.8 22 14-35 18-39 (181)
492 1ewq_A DNA mismatch repair pro 96.8 0.00095 3.3E-08 43.3 2.9 22 14-35 578-599 (765)
493 1jr3_A DNA polymerase III subu 96.7 0.0011 3.8E-08 38.6 2.9 21 14-34 40-60 (373)
494 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0014 4.8E-08 39.2 3.3 23 12-34 24-46 (359)
495 1wb9_A DNA mismatch repair pro 96.7 0.001 3.6E-08 43.3 2.9 21 14-34 609-629 (800)
496 4b4t_K 26S protease regulatory 96.7 0.0012 4.1E-08 40.3 3.0 22 13-34 207-228 (428)
497 3ux8_A Excinuclease ABC, A sub 96.7 0.00093 3.2E-08 42.4 2.6 16 14-29 46-61 (670)
498 1zu4_A FTSY; GTPase, signal re 96.7 0.0012 4.1E-08 38.7 2.9 22 13-34 106-127 (320)
499 2j37_W Signal recognition part 96.7 0.0017 5.6E-08 40.4 3.6 23 11-33 100-122 (504)
500 1iqp_A RFCS; clamp loader, ext 96.7 0.0013 4.4E-08 37.6 2.9 22 14-35 48-69 (327)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.74 E-value=3.2e-18 Score=95.51 Aligned_cols=66 Identities=29% Similarity=0.538 Sum_probs=41.9
Q ss_pred CCCCCCc-CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 1 MARRADE-EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 1 m~~~~~~-~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
|+...+. ++...|||+++|+++||||||+++|+.+.|.+.+.||+|.+|..+.+.+++..+ +++||
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v--~l~iw 67 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTI--RLQLW 67 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEE--EEEEE
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEE--EEEEE
Confidence 4443332 345679999999999999999999999999999999999999999999998885 77887
No 2
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=4.8e-15 Score=81.44 Aligned_cols=62 Identities=42% Similarity=0.770 Sum_probs=52.5
Q ss_pred CCcCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 5 ADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 5 ~~~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+.+++..+||+++|+++||||||++++.+..+...+.+|++.++..+.+.+++..+ .+++|
T Consensus 19 ~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~l~l~ 80 (201)
T 2ew1_A 19 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKV--KLQIW 80 (201)
T ss_dssp ---CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEE--EEEEE
T ss_pred CccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEE--EEEEE
Confidence 344567789999999999999999999999999888899999999888999998775 56665
No 3
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.60 E-value=8.2e-15 Score=79.73 Aligned_cols=60 Identities=77% Similarity=1.115 Sum_probs=52.3
Q ss_pred cCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 7 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 7 ~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+.+..+|++++|++|||||||++++++..++..+.+|++.++....+.+++..+ .+++|
T Consensus 24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~--~~~i~ 83 (191)
T 1oix_A 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI--KAQIW 83 (191)
T ss_dssp CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE--EEEEE
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE--EEEEE
Confidence 3456789999999999999999999999999888999999999889999999875 44554
No 4
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=78.16 Aligned_cols=62 Identities=56% Similarity=0.964 Sum_probs=52.1
Q ss_pred CCcCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 5 ADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 5 ~~~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+++..+||+++|+.+||||||++++.+..+...+.++++.++..+.+.+++... .+.+|
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~i~ 79 (193)
T 2oil_A 18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAV--KAQIW 79 (193)
T ss_dssp --CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEE--EEEEE
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE--EEEEE
Confidence 344567789999999999999999999999999888889999999888888887775 56665
No 5
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.58 E-value=1.6e-14 Score=76.87 Aligned_cols=66 Identities=27% Similarity=0.508 Sum_probs=50.2
Q ss_pred CCCCCCcCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 1 m~~~~~~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
|+......+...+||+++|+.++|||||++++.+..+...+.++++.++..+.+.+++... .+.+|
T Consensus 3 m~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 68 (179)
T 2y8e_A 3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV--RLQLW 68 (179)
T ss_dssp ---------CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEE--EEEEE
T ss_pred cccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEE--EEEEE
Confidence 3444444455679999999999999999999999999888899999999888898988775 45555
No 6
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.57 E-value=1.8e-14 Score=78.01 Aligned_cols=63 Identities=40% Similarity=0.610 Sum_probs=49.3
Q ss_pred CCCcCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 4 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 4 ~~~~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..+......+||+++|+.+||||||++++.+..+...+.++++.++..+.+.+++... .+++|
T Consensus 13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~i~ 75 (191)
T 2a5j_A 13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQI--KLQIW 75 (191)
T ss_dssp CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEE--EEEEE
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEE--EEEEE
Confidence 3445667899999999999999999999999999888889999888888888888775 56665
No 7
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=78.89 Aligned_cols=60 Identities=42% Similarity=0.796 Sum_probs=42.2
Q ss_pred cCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 7 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 7 ~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+.+..+||+++|+.+||||||++++.+..+...+.+|++.++..+.+.+++..+ .+++|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~l~i~ 83 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV--KLQIW 83 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEE--EEEEE
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEE--EEEEE
Confidence 3456789999999999999999999999999888889999999888899988764 56666
No 8
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.55 E-value=3.4e-14 Score=77.47 Aligned_cols=57 Identities=77% Similarity=1.091 Sum_probs=47.6
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
++.+|++++|++|||||||++++++..+...+.++++.++....+.+++..+ .+++|
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~--~~~i~ 59 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI--KAQIW 59 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE--EEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE--EEEEE
Confidence 5679999999999999999999999999888889999898888999999875 45555
No 9
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.54 E-value=4.4e-14 Score=75.12 Aligned_cols=61 Identities=44% Similarity=0.785 Sum_probs=51.5
Q ss_pred CcCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 6 ~~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+.+.+..+||+++|+.++|||||++++.+..+...+.++.+.++..+.+.+++... .+.+|
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~l~ 69 (179)
T 1z0f_A 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI--KLQIW 69 (179)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEE--EEEEE
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEE--EEEEE
Confidence 34567789999999999999999999999999888889999888888888888765 55655
No 10
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.54 E-value=5.1e-14 Score=75.65 Aligned_cols=56 Identities=38% Similarity=0.687 Sum_probs=46.7
Q ss_pred CCCcCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeE-EEEEEECCe
Q 035301 4 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFA-TRTLQVTNF 59 (68)
Q Consensus 4 ~~~~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~ 59 (68)
|...+++..+||+++|+.++|||||++++.+..+...+.+|++.++. .+.+.+++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 59 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANG 59 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTS
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCC
Confidence 44556788999999999999999999999999998888899999887 667777765
No 11
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.54 E-value=7.5e-14 Score=75.38 Aligned_cols=61 Identities=33% Similarity=0.621 Sum_probs=51.9
Q ss_pred CcCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 6 ~~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+...+..+||+++|+.+||||||++++.+..+...+.++++.++..+.+..++... .+.+|
T Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~l~ 76 (189)
T 2gf9_A 16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRI--KLQIW 76 (189)
T ss_dssp CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEE--EEEEE
T ss_pred CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEE--EEEEE
Confidence 34456789999999999999999999999999888889999998888888888765 55665
No 12
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.53 E-value=9.9e-14 Score=74.41 Aligned_cols=59 Identities=41% Similarity=0.743 Sum_probs=51.6
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+.+..+||+++|+.+||||||++++.+..+...+.++++.++..+.+.+++... .+++|
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ 64 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYV--KLQIW 64 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEE--EEEEE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEE--EEEEE
Confidence 457789999999999999999999999999888889999999888888888764 56665
No 13
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.53 E-value=4.4e-14 Score=76.68 Aligned_cols=61 Identities=36% Similarity=0.737 Sum_probs=44.5
Q ss_pred CcCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 6 ~~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+...+..+||+++|+.+||||||++++.+..+...+.++++.++..+.+.+++..+ .+.+|
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~l~l~ 80 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI--RLQIW 80 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEE--EEEEE
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEE--EEEEE
Confidence 34456789999999999999999999999999888889999999888899988764 56665
No 14
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.53 E-value=5.3e-14 Score=74.40 Aligned_cols=58 Identities=34% Similarity=0.608 Sum_probs=49.9
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+..+||+++|++++|||||++++.+..+...+.++++.++..+.+.+++..+ .+.+|
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~l~i~ 60 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRV--NLAIW 60 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEE--EEEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEE--EEEEE
Confidence 46789999999999999999999999999888899999998888888888775 55655
No 15
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.53 E-value=3.3e-14 Score=77.65 Aligned_cols=59 Identities=42% Similarity=0.714 Sum_probs=40.1
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+.+..+||+++|+.+||||||++++.++.+...+.++++.++..+.+.+++... .+++|
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~l~l~ 79 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTV--KLQIW 79 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEE--EEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeee--EEEEE
Confidence 456789999999999999999999999999888889999888888888888764 56665
No 16
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.6e-14 Score=78.16 Aligned_cols=66 Identities=62% Similarity=0.929 Sum_probs=45.8
Q ss_pred CCCCCC-cCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 1 MARRAD-EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 1 m~~~~~-~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
|+.... ..++..+||+++|+.+||||||++++.+..+...+.++++.++..+.+.+++..+ .+++|
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~i~ 67 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRI--KAQIW 67 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEE--EEEEE
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEE--EEEEE
Confidence 444333 2457789999999999999999999999999888889999999888888988765 56665
No 17
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.52 E-value=8.7e-14 Score=74.06 Aligned_cols=58 Identities=41% Similarity=0.717 Sum_probs=47.2
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
....+||+++|+.++|||||++++.+..+...+.++++.++....+.+++... .+.+|
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 61 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFV--TMQIW 61 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEE--EEEEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEE--EEEEE
Confidence 45689999999999999999999999998888889999999888888988764 56665
No 18
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.52 E-value=7.7e-14 Score=75.53 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=47.7
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.....+||+++|+.+||||||++++.++.|...+.+|++.++ ...+.+++..+ .+++|
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~l~i~ 74 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPV--HLRVM 74 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEE--EEEEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEE--EEEEE
Confidence 345679999999999999999999999999988999999887 56677888775 56665
No 19
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.52 E-value=1.4e-13 Score=74.93 Aligned_cols=59 Identities=32% Similarity=0.687 Sum_probs=51.5
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..+..+||+++|+.+||||||++++.+..+...+.++++.++..+.+.+++... .+++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~l~ 62 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI--KLQIW 62 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEE--EEEEE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEE--EEEEE
Confidence 356789999999999999999999999999888889999999888888888775 56665
No 20
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.52 E-value=7.1e-14 Score=74.63 Aligned_cols=61 Identities=34% Similarity=0.560 Sum_probs=50.2
Q ss_pred CcCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 6 ~~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+......+||+++|+.++|||||++++.+..+...+.++++.++..+.+.+++... .+++|
T Consensus 6 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 66 (181)
T 2efe_B 6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV--KFEIW 66 (181)
T ss_dssp ----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEE--EEEEE
T ss_pred CCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEE--EEEEE
Confidence 34456789999999999999999999999999888889999888888888888765 56665
No 21
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=73.64 Aligned_cols=59 Identities=47% Similarity=0.799 Sum_probs=48.6
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+++..+||+++|+.++|||||++++.+..+...+.++++.++....+.+++... .+.+|
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 63 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKV--KLQIW 63 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEE--EEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEE--EEEEE
Confidence 456789999999999999999999999999888899999999888999988775 45555
No 22
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.52 E-value=1.4e-13 Score=74.31 Aligned_cols=60 Identities=50% Similarity=0.827 Sum_probs=52.3
Q ss_pred cCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 7 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 7 ~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+..+||+++|+.+||||||++++.+..+...+.++++.++....+.+++..+ .+++|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 70 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI--KLQIW 70 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEE--EEEEE
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEE--EEEEE
Confidence 3456789999999999999999999999999988999999999889999998775 55555
No 23
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.51 E-value=2.3e-14 Score=76.80 Aligned_cols=59 Identities=46% Similarity=0.802 Sum_probs=36.0
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+.+..+||+++|+.+||||||++++.+..+...+.++++.++..+.+.+++... .+++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~l~ 62 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI--KLQIW 62 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEE--EEEEE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEE--EEEEE
Confidence 356789999999999999999999999988888889999999888888888765 56665
No 24
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.51 E-value=7.9e-14 Score=73.51 Aligned_cols=57 Identities=33% Similarity=0.643 Sum_probs=49.4
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+..+||+++|++|+|||||++++.+..+...+.++++.++..+.+.+++... .+.+|
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~l~ 59 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDV--RLMLW 59 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEE--EEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEE--EEEEE
Confidence 4679999999999999999999999999888899999888888888888764 56665
No 25
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.51 E-value=1.1e-13 Score=75.59 Aligned_cols=59 Identities=47% Similarity=0.836 Sum_probs=51.8
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+.+..+||+++|+.+||||||++++.+..+...+.++++.++..+.+.+++..+ .+++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~l~ 62 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV--KLQIW 62 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEE--EEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEE--EEEEE
Confidence 456789999999999999999999999999888899999999888899988775 56665
No 26
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=9.4e-14 Score=75.30 Aligned_cols=62 Identities=32% Similarity=0.499 Sum_probs=50.0
Q ss_pred CCcCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 5 ADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 5 ~~~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+...++..+||+++|+.++|||||++++.+..+...+.++++.++..+.+.+++... .+.+|
T Consensus 16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 77 (192)
T 2fg5_A 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH--KFLIW 77 (192)
T ss_dssp -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEE--EEEEE
T ss_pred cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEE--EEEEE
Confidence 344567789999999999999999999999998888899999998888888877764 56665
No 27
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=1.6e-13 Score=73.98 Aligned_cols=59 Identities=41% Similarity=0.653 Sum_probs=51.1
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+....+||+++|+.+||||||++++.+..+...+.++++.++..+.+.+++... .+.+|
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~i~ 69 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKA--KLAIW 69 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEE--EEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEE--EEEEE
Confidence 345679999999999999999999999999888999999999888888888775 56665
No 28
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.50 E-value=1.2e-13 Score=74.61 Aligned_cols=57 Identities=33% Similarity=0.632 Sum_probs=49.6
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+||+++|+.+||||||++++.++.+...+.++++.++..+.+.+++... .+.+|
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~l~ 74 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI--KIQLW 74 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEE--EEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEE--EEEEE
Confidence 4579999999999999999999999999888899999999888899988764 56665
No 29
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.49 E-value=1.3e-13 Score=75.78 Aligned_cols=53 Identities=38% Similarity=0.731 Sum_probs=45.9
Q ss_pred cCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCe
Q 035301 7 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNF 59 (68)
Q Consensus 7 ~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 59 (68)
.+++..+||+++|+.+||||||++++.+..+...+.+|++.++..+.+.+++.
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~ 72 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 72 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCc
Confidence 34677899999999999999999999999998888899999988788887765
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.49 E-value=2.7e-13 Score=71.57 Aligned_cols=58 Identities=36% Similarity=0.533 Sum_probs=50.2
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
....+|++++|+.++|||||++++.+..+...+.++.+.++..+.+.+++... .+.+|
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 60 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELH--KFLIW 60 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEE--EEEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEE--EEEEE
Confidence 35679999999999999999999999998888899999998888888888765 55555
No 31
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.49 E-value=2.3e-13 Score=71.74 Aligned_cols=58 Identities=36% Similarity=0.576 Sum_probs=50.1
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+...+||+++|+.++|||||++++.++.+...+.++++.++..+.+.+++... .+++|
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 60 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTV--KFEIW 60 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEE--EEEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEE--EEEEE
Confidence 34679999999999999999999999999888889999999888888888765 55655
No 32
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.49 E-value=1.2e-13 Score=76.28 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=45.7
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.....+||+++|+.+||||||++++.++.+...+.+|++.++ .+.+.+++..+ .+++|
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~l~i~ 80 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRV--ELSLW 80 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEE--EEEEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEE--EEEEE
Confidence 345579999999999999999999999999999999999887 56777777765 56666
No 33
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.49 E-value=2.7e-13 Score=72.61 Aligned_cols=58 Identities=29% Similarity=0.412 Sum_probs=49.8
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.....+||+++|+.+||||||++++.+..+...+.++++..+ .+.+.+++... .+++|
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~l~i~ 71 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWA--ILDVL 71 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEE--EEEEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEE--EEEEE
Confidence 345689999999999999999999999999989999999888 78888888875 45555
No 34
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=2.8e-13 Score=71.40 Aligned_cols=55 Identities=31% Similarity=0.644 Sum_probs=48.4
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+||+++|+.++|||||++++.++.+...+.++++.++..+.+.+++... .+++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 57 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTV--KFEIW 57 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEE--EEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE--EEEEE
Confidence 58999999999999999999999999888889999998888888888765 55655
No 35
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.49 E-value=2.8e-13 Score=73.30 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=47.4
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.....+||+++|++|||||||+++++++.|...+.+|. .++ .+.+.+++..+ .+++|
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~--~l~i~ 72 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVDGQSY--LLLIR 72 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEETTEEE--EEEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEECCEEE--EEEEE
Confidence 34558999999999999999999999999988888884 455 58888998875 56666
No 36
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=1.2e-13 Score=74.69 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=49.9
Q ss_pred CCcCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 5 ADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 5 ~~~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
........+||+++|+.+||||||++++.+..+...+.+|++..+ .+.+.+++..+ .+++|
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~i~ 71 (194)
T 2atx_A 11 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQY--LLGLY 71 (194)
T ss_dssp SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEE--EEEEE
T ss_pred CCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEE--EEEEE
Confidence 334456789999999999999999999999999888899998776 56777777764 56665
No 37
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=75.14 Aligned_cols=59 Identities=37% Similarity=0.618 Sum_probs=40.1
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..+..+||+++|+.+||||||++++.+..+...+.++++.++..+.+.+++... .+++|
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~l~i~ 82 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERT--VLQLW 82 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEE--EEEEE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEE--EEEEE
Confidence 345579999999999999999999999998888889999999888899988775 56665
No 38
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.48 E-value=6.3e-14 Score=76.50 Aligned_cols=59 Identities=31% Similarity=0.374 Sum_probs=45.0
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..+..+||+++|+++||||||++++.+..+...+.++.+.++..+.+.+++..+ .+++|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~ 77 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEV--TLVVY 77 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEE--EEEEE
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEE--EEEEE
Confidence 445689999999999999999999986555444556777777778888888875 56666
No 39
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.47 E-value=1.7e-13 Score=73.14 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=46.1
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..+||+++|+++||||||+++++++.+.. +.+|++..+ .+.+.+++..+ .+++|
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~--~l~i~ 59 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTH--LVLIR 59 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEE--EEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEE--EEEEE
Confidence 46999999999999999999999999876 788988666 68888888775 66766
No 40
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.47 E-value=1.2e-13 Score=72.95 Aligned_cols=56 Identities=39% Similarity=0.700 Sum_probs=42.2
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..+||+++|+.++|||||++++.+..+...+.++++.++..+.+.+++... .+.+|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ 57 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV--KLQIW 57 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEE--EEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEE--EEEEE
Confidence 468999999999999999999999999888889999888888888887764 56665
No 41
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.47 E-value=4.1e-13 Score=72.72 Aligned_cols=58 Identities=28% Similarity=0.419 Sum_probs=48.3
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.....+||+++|+++||||||++++.+..+...+.+|++.++. ..+.+++..+ .+++|
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~--~~~i~ 76 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEF--ILHLW 76 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEE--EEEEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEE--EEEEE
Confidence 3456899999999999999999999999998889999998884 5777888775 55665
No 42
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.47 E-value=4.3e-14 Score=78.04 Aligned_cols=65 Identities=29% Similarity=0.452 Sum_probs=53.7
Q ss_pred CCCCCcCCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 2 ARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 2 ~~~~~~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+.+........+||+++|+.+||||||+++++.+.+...+.+++|.++....+.+++... .+++|
T Consensus 5 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~i~ 69 (221)
T 3gj0_A 5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI--KFNVW 69 (221)
T ss_dssp -CCSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEE--EEEEE
T ss_pred ccccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEE--EEEEE
Confidence 344555667789999999999999999999888888888889999988888888888775 56665
No 43
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=3.9e-14 Score=76.68 Aligned_cols=59 Identities=32% Similarity=0.682 Sum_probs=51.2
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+++..+||+++|+.+||||||++++.+..+...+.++++.++..+.+.+++... .++||
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~i~ 77 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV--KLQIW 77 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTE--EEEEE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEE--EEEEE
Confidence 456789999999999999999999999998888889999888888888887764 56665
No 44
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.47 E-value=2.9e-13 Score=73.71 Aligned_cols=58 Identities=33% Similarity=0.670 Sum_probs=49.3
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+..+||+++|+.++|||||++++.+..+...+.++++.++....+.+++... .+.+|
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~l~ 62 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLV--TMQIW 62 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEE--EEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEE--EEEEE
Confidence 45679999999999999999999999999888999999999888888888764 55655
No 45
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.46 E-value=2.2e-13 Score=74.93 Aligned_cols=57 Identities=25% Similarity=0.407 Sum_probs=47.4
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+..+||+++|+.+||||||++++.+..+...+.+|++.++ .+.+.+++..+ .+++|
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~l~i~ 81 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRI--ELSLW 81 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEE--EEEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEE--EEEEE
Confidence 45679999999999999999999999999888899998887 56777777764 56666
No 46
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.46 E-value=2.8e-13 Score=72.93 Aligned_cols=57 Identities=25% Similarity=0.407 Sum_probs=47.2
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
....+||+++|+++||||||++++.+..+...+.+|++.++ .+.+.+++..+ .+++|
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~i~ 60 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRI--ELSLW 60 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEE--EEEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEE--EEEEE
Confidence 45679999999999999999999999999888899998877 56777777764 56665
No 47
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.46 E-value=2.6e-13 Score=74.77 Aligned_cols=56 Identities=34% Similarity=0.457 Sum_probs=40.8
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+||+++|+.+||||||++++.++.+...+.+|++..+ ...+.+++..+ .+++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~l~l~ 87 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPV--HLHIW 87 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEE--EEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEE--EEEEE
Confidence 4579999999999999999999999999888889988766 56778888775 55665
No 48
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.46 E-value=8.3e-14 Score=74.19 Aligned_cols=58 Identities=28% Similarity=0.537 Sum_probs=48.9
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECC-eEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN-FSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~l~~w 68 (68)
....+||+++|+++||||||++++.+..+...+.+|++.++..+.+.+++ ... .+++|
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~~~ 61 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNV--TLQIW 61 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEE--EEEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEE--EEEEE
Confidence 34579999999999999999999999998877889999888888888887 343 56666
No 49
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=7.1e-13 Score=70.66 Aligned_cols=60 Identities=42% Similarity=0.711 Sum_probs=49.8
Q ss_pred cCCceeeEEEEECCCCChHHHHHHHHhcCcCc-CCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 7 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFC-LESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 7 ~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..++..+||+++|+.++|||||++++.+..+. ..+.++++.++....+.+++... .+++|
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~~~ 65 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV--KLQMW 65 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEE--EEEEE
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEE--EEEEE
Confidence 34567899999999999999999999998885 56778999998777778888765 55655
No 50
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.45 E-value=7.1e-13 Score=70.54 Aligned_cols=57 Identities=26% Similarity=0.419 Sum_probs=48.5
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+...+||+++|+.++|||||++++.+..+...+.+|++..+. +.+.+++... .+++|
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~--~~~~~ 62 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPA--RLDIL 62 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEE--EEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEE--EEEEE
Confidence 455799999999999999999999999998889999998874 7788888764 55665
No 51
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.45 E-value=4.2e-13 Score=73.31 Aligned_cols=58 Identities=41% Similarity=0.753 Sum_probs=48.8
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+..+||+++|+.+||||||++++.+..+...+.++++.++....+.+++... .+.+|
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ 74 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV--KLQLW 74 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEE--EEEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEE--EEEEE
Confidence 45679999999999999999999999999888889999999888888888765 56665
No 52
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.45 E-value=3.4e-13 Score=72.75 Aligned_cols=52 Identities=33% Similarity=0.614 Sum_probs=44.9
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeE
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
.+..+||+++|+.++|||||++++++..+...+.+|++.++..+.+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 55 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDIN 55 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC--
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcc
Confidence 3457999999999999999999999999988899999999888888877644
No 53
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=3.5e-13 Score=74.84 Aligned_cols=58 Identities=31% Similarity=0.459 Sum_probs=42.0
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCc--CcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNE--FCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.....+||+++|+++||||||++++++.. +...+ ++++.++..+.+.+++..+ .+.+|
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~--~l~~~ 92 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESA--TIILL 92 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEE--EEEEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeee--EEEEe
Confidence 44567999999999999999999999643 34433 4577788788889998875 44443
No 54
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.44 E-value=7.5e-13 Score=70.78 Aligned_cols=56 Identities=27% Similarity=0.373 Sum_probs=48.7
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+||+++|+.+||||||++++.++.+...+.+|.+..+ .+.+.+++..+ .+++|
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~l~ 59 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEY--HLQLV 59 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEE--EEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEE--EEEEE
Confidence 4579999999999999999999999889999999999888 78888888775 55665
No 55
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.43 E-value=5.6e-13 Score=72.43 Aligned_cols=58 Identities=28% Similarity=0.343 Sum_probs=39.3
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.....+||+++|+.+||||||++++.+..+...+.+|++..+ ...+.+++..+ .+++|
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~i~ 73 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPV--RLQLC 73 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEE--EEEEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEE--EEEEE
Confidence 345689999999999999999999999989888889998776 56778888765 55665
No 56
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=1.1e-12 Score=71.22 Aligned_cols=56 Identities=25% Similarity=0.424 Sum_probs=47.1
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+||+++|+.+||||||++++.+..+...+.+|++..+ .+.+.+++... .+++|
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~l~ 81 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVV--SMEIL 81 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEE--EEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEE--EEEEE
Confidence 4578999999999999999999999999888999998777 56778888775 56665
No 57
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.42 E-value=3.7e-13 Score=71.71 Aligned_cols=58 Identities=31% Similarity=0.697 Sum_probs=44.4
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEEC-CeEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVT-NFSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~~w 68 (68)
....+||+++|+.++|||||++++.+..+...+.++++.++....+.++ +... .+.+|
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ 63 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVA--TMQVW 63 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCE--EEEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEE--EEEEE
Confidence 4567999999999999999999999999988889999988887888777 3332 45555
No 58
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.41 E-value=8.6e-13 Score=72.28 Aligned_cols=56 Identities=27% Similarity=0.407 Sum_probs=47.2
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+||+++|+.+||||||++++.++.+...+.+|++..+ ...+.+++..+ .+++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~i~ 62 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIV--NLGLW 62 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEE--EEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEE--EEEEE
Confidence 4579999999999999999999999999888899998766 56777787764 56666
No 59
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.41 E-value=1.3e-12 Score=68.75 Aligned_cols=54 Identities=28% Similarity=0.468 Sum_probs=45.5
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+||+++|+.+||||||++++.++.+...+.+|.+..+ .+.+.+++... .+++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~l~ 56 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQC--MLEIL 56 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEE--EEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEE--EEEEE
Confidence 58999999999999999999999999888889998777 46677777764 55655
No 60
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.41 E-value=1.9e-12 Score=70.35 Aligned_cols=57 Identities=25% Similarity=0.398 Sum_probs=47.6
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
....+||+++|+.+||||||++++.+..+...+.+|.+..+ ...+.+++..+ .+.+|
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~l~ 67 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEV--QIDIL 67 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEE--EEEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEE--EEEEE
Confidence 34579999999999999999999999999888889998776 56778888764 55665
No 61
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.41 E-value=9.3e-14 Score=74.86 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=45.5
Q ss_pred CCCCCCcCCceeeEEEEECCCCChHHHHHHHHhcCcCcCC-----------CccceeeEeEEEEE-EECCeEEEEEEEeC
Q 035301 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLE-----------SKSTIGVEFATRTL-QVTNFSSFTSLHFY 68 (68)
Q Consensus 1 m~~~~~~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~-----------~~~t~~~~~~~~~~-~~~~~~~~~~l~~w 68 (68)
|+.......+..+||+++|+++||||||++.+ .+.+... +.+|++.++..+.+ .+++..+ .+++|
T Consensus 3 m~~~~~~~~~~~~ki~vvG~~~~GKssL~~~l-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~i~ 79 (198)
T 3t1o_A 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWI-YSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT--RFHLY 79 (198)
T ss_dssp -CEEETTTTEEEEEEEEECSTTSSHHHHHHHH-HHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEE--EEEEE
T ss_pred ccccchhccccccEEEEECCCCCCHHHHHHHH-HhhccccccccccccccccccceeeeecccccccccCCce--EEEEE
Confidence 44445556778999999999999999999544 4455544 34688888766655 5666664 56665
No 62
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.40 E-value=2.4e-12 Score=68.78 Aligned_cols=57 Identities=25% Similarity=0.398 Sum_probs=46.4
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
....+||+++|+.++|||||++++.+..+...+.++.+..+ ...+.+++..+ .+.+|
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~l~ 71 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEV--QIDIL 71 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEE--EEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEE--EEEEE
Confidence 34579999999999999999999999999888889988777 56677888764 55555
No 63
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.39 E-value=1.4e-12 Score=69.18 Aligned_cols=55 Identities=35% Similarity=0.484 Sum_probs=41.4
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..+||+++|+++||||||++++.+..+...+ ++.+.++..+.+.+++... .+++|
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~ 57 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDT--TLVVV 57 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEE--EEEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEE--EEEEE
Confidence 4689999999999999999999998876544 5677777778888888764 55555
No 64
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.39 E-value=3.3e-12 Score=68.27 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=46.6
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..+||+++|++++|||||++++.++.+...+.+|++..+ ...+.+++..+ .+++|
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~i~ 58 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPV--NLGLW 58 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEE--EEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEE--EEEEE
Confidence 468999999999999999999999999888889988766 56777888775 56665
No 65
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.39 E-value=1.8e-13 Score=74.37 Aligned_cols=57 Identities=32% Similarity=0.470 Sum_probs=19.4
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcC--cCcCCCccceeeEeEEEEEEECCe--EEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFCLESKSTIGVEFATRTLQVTNF--SSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~l~~w 68 (68)
...+||+++|+.+||||||++++.+. .+...+.+|++.++..+.+.+++. .. .+++|
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~--~~~l~ 78 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSV--ELFLL 78 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEE--EEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEE--EEEEE
Confidence 45789999999999999999999998 888888899998888888998886 43 56666
No 66
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.38 E-value=5e-13 Score=72.10 Aligned_cols=45 Identities=22% Similarity=0.504 Sum_probs=29.7
Q ss_pred eeEEEEECCCCChHHHHHHHHhcC--cCcCCCccceeeEeEEEEEEE
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRN--EFCLESKSTIGVEFATRTLQV 56 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~ 56 (68)
.+|++++|++|||||||++++++. .+...+.+|+|.++....+.+
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~ 48 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQI 48 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeecc
Confidence 479999999999999999999984 566678899999887666554
No 67
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=2.9e-12 Score=69.29 Aligned_cols=56 Identities=27% Similarity=0.433 Sum_probs=46.0
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+||+++|+.+||||||++++.++.+...+.++++..+ ...+..++... .+.+|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~l~ 61 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVC--TLQIT 61 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEE--EEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEE--EEEEE
Confidence 4568999999999999999999999998888889988766 45667777764 55665
No 68
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.38 E-value=3.9e-12 Score=66.73 Aligned_cols=54 Identities=31% Similarity=0.489 Sum_probs=45.5
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+||+++|+.++|||||++++.++.+...+.++.+..+ .+.+.+++... .+.+|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~ 56 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPS--VLEIL 56 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEE--EEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEE--EEEEE
Confidence 58999999999999999999999999888888888655 67788888775 45555
No 69
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.38 E-value=2e-12 Score=68.27 Aligned_cols=55 Identities=31% Similarity=0.394 Sum_probs=37.1
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+||+++|+++||||||++++.+..+...+.++.+.++..+.+.+++... .+.+|
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 56 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEV--TLIVY 56 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEE--EEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEE--EEEEE
Confidence 58999999999999999999998877766667777778788888888875 55555
No 70
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.38 E-value=3.8e-12 Score=66.81 Aligned_cols=54 Identities=26% Similarity=0.469 Sum_probs=45.4
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+||+++|+.++|||||++++.+..+...+.++.+..+ ...+.+++... .+.+|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~l~ 57 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEV--QIDIL 57 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEE--EEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEE--EEEEE
Confidence 58999999999999999999999998888889988777 46677888764 45555
No 71
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.38 E-value=2.3e-12 Score=70.26 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=47.3
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+||+++|+.+||||||++++.+..+...+.++++.++. ..+.+++... .+++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~--~l~i~ 78 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQV--ELALW 78 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEE--EEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEE--EEEEE
Confidence 45789999999999999999999999998888999988874 5577888764 56665
No 72
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.37 E-value=1.4e-12 Score=71.05 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=43.7
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+||+++|+.+||||||++++.+..+...+.+|.+..+ ...+.+++..+ .+++|
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~l~ 77 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEF--HLHLV 77 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CE--EEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEE--EEEEE
Confidence 4579999999999999999999999999988999999877 66666666654 45555
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=5.1e-12 Score=66.62 Aligned_cols=54 Identities=24% Similarity=0.433 Sum_probs=44.5
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+||+++|+.++|||||++++.++.+...+.++++..+ ...+..++... .+.+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~~~ 56 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSIC--TLQIT 56 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEE--EEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEE--EEEEE
Confidence 58999999999999999999999998888888888776 45666777664 45555
No 74
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.36 E-value=6.7e-12 Score=67.18 Aligned_cols=56 Identities=27% Similarity=0.437 Sum_probs=46.0
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
+..+||+++|+.+||||||++++.+..+...+.++.+..+ ...+.+++... .+++|
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~i~ 57 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETC--LLDIL 57 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEETTEEE--EEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEECCcEE--EEEEE
Confidence 3578999999999999999999999998888888886555 57777888775 45555
No 75
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.36 E-value=2.4e-12 Score=70.04 Aligned_cols=51 Identities=35% Similarity=0.488 Sum_probs=38.7
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcC--cCcCCCccceeeEeEEEEEEECCeEE
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFCLESKSTIGVEFATRTLQVTNFSS 61 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~ 61 (68)
...+||+++|+++||||||++++++. .+...+ ++++.++..+.+.+++..+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 56 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESA 56 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEE
Confidence 34689999999999999999999963 344444 4577777788889998875
No 76
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.36 E-value=1.4e-13 Score=75.02 Aligned_cols=59 Identities=51% Similarity=0.844 Sum_probs=51.2
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..+..+||+++|+.+||||||++++.+..+...+.++++.++....+.+++..+ .+.+|
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 87 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI--KLQIW 87 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEE--EEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEE--EEEEE
Confidence 346789999999999999999999999999888889999888888899988775 55665
No 77
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.35 E-value=8.3e-12 Score=67.20 Aligned_cols=55 Identities=27% Similarity=0.441 Sum_probs=45.4
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..+||+++|+.|||||||++++.+..+...+.++.+..+ .+.+.+++... .+.+|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~l~ 74 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETC--LLDIL 74 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEE--EEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEE--EEEEE
Confidence 468999999999999999999999988888888887666 56777787764 45555
No 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=5.2e-12 Score=69.13 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=39.8
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..+||+++|+.+||||||++++.+..+...+.++++.++. ..+.+++... .+.+|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~--~~~i~ 78 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQV--ELALW 78 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEE--EEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEE--EEEEE
Confidence 4689999999999999999999999998888899988774 4577788764 55665
No 79
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.33 E-value=9.4e-12 Score=65.09 Aligned_cols=54 Identities=28% Similarity=0.473 Sum_probs=44.7
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+|++++|+.|+|||||++++.+..+...+.++.+..+ .+.+.+++... .+.+|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~ 56 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETC--LLDIL 56 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEE--EEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEE--EEEEE
Confidence 47999999999999999999999988888888887666 57777887764 45554
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.32 E-value=5.8e-12 Score=68.95 Aligned_cols=56 Identities=29% Similarity=0.398 Sum_probs=43.9
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+||+++|+.+||||||++++.++.+...+.++++..+ ...+.+++..+ .+++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~l~i~ 83 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPV--NLGLW 83 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEE--EEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEE--EEEEE
Confidence 4578999999999999999999999999888888887555 67777888775 55555
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.32 E-value=6.1e-12 Score=68.00 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=32.8
Q ss_pred cCCceeeEEEEECCCCChHHHHHHHHhcCcCcC-CCccceeeEe
Q 035301 7 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCL-ESKSTIGVEF 49 (68)
Q Consensus 7 ~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~ 49 (68)
......+||+++|+.+||||||++++.+..+.. .+.+|++..+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~ 55 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV 55 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE
Confidence 445678999999999999999999999999988 7889998544
No 82
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.28 E-value=7.9e-13 Score=70.58 Aligned_cols=56 Identities=29% Similarity=0.439 Sum_probs=31.1
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+|++++|+.++|||||++++.+..+...+.+|++..+ ...+.+++..+ .+++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~i~ 61 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATV--NLGLW 61 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC---------CEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEE--EEEEE
Confidence 3468999999999999999999999998888889988666 33445555543 44454
No 83
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.28 E-value=8.1e-12 Score=66.41 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=42.5
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeE
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
...++|+++|+.+||||||++++.+..+...+.+++..++....+.+++..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK 56 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce
Confidence 456899999999999999999999999887777777766666677777755
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.26 E-value=3.3e-11 Score=65.04 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=36.9
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeE
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFA 50 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~ 50 (68)
...+||+++|+.+||||||++++.+..+...+.+|++.++.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 60 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR 60 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE
Confidence 45799999999999999999999999998888899998764
No 85
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.26 E-value=2.1e-11 Score=64.74 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=34.7
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCe
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNF 59 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 59 (68)
.++++++|++|||||||++++.+..+.....|+...++....+.+++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~ 50 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE 50 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCc
Confidence 479999999999999999999988776555566655665666666654
No 86
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.24 E-value=7.7e-12 Score=68.69 Aligned_cols=60 Identities=23% Similarity=0.392 Sum_probs=44.5
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.....+||+++|+.+||||||++++++..+...+.++.+..+.......++... +.+.+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~l~ 66 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNV-IKFNVW 66 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCE-EEEEEE
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcE-EEEEEE
Confidence 345689999999999999999999999888888888988877655555443321 245555
No 87
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.23 E-value=2.6e-11 Score=63.78 Aligned_cols=53 Identities=34% Similarity=0.510 Sum_probs=35.4
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
.+||+++|+++||||||++++.+..+. ...++.+..+ .+.+.+++... .+++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~--~~~i~ 54 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEA--SLMVY 54 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEE--EEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEE--EEEEE
Confidence 589999999999999999999977654 3456677666 57778888775 55555
No 88
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.23 E-value=7.7e-13 Score=74.99 Aligned_cols=48 Identities=33% Similarity=0.623 Sum_probs=37.7
Q ss_pred CcCCceeeEEEEECCC---------CChHHHHHHHHhc---CcCcCCCccce-eeEeEEEE
Q 035301 6 DEEYDYLFKVVLIGDS---------GVGKSNLLSRFTR---NEFCLESKSTI-GVEFATRT 53 (68)
Q Consensus 6 ~~~~~~~~ki~~iG~~---------~vGKtsl~~~~~~---~~~~~~~~~t~-~~~~~~~~ 53 (68)
+......+||+++|++ +||||||++++++ +.+...+.+++ +.+|..+.
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~ 73 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRV 73 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTT
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeE
Confidence 3445678999999999 9999999999998 66777777776 56654333
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.23 E-value=1.9e-11 Score=65.92 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=38.2
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCc-CcCCCccceeeEeEEEEEEECCe
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNE-FCLESKSTIGVEFATRTLQVTNF 59 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~ 59 (68)
....+||+++|+.+||||||++++.+.. +...+.+|++ +..+.+.+++.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~~ 67 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSSL 67 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSSC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECCE
Confidence 3457899999999999999999999887 6777888887 44466666653
No 90
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.22 E-value=3.7e-11 Score=64.47 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=39.3
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeE
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
..+|++++|++|||||||++++++..+...+.+++..++....+.+++..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 46899999999999999999999877665556666666666677776643
No 91
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.20 E-value=8.2e-11 Score=67.83 Aligned_cols=55 Identities=31% Similarity=0.430 Sum_probs=46.6
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..+|++++|++++|||||++++.++.+...+.+|++..+ ...+.+++..+ .+++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~~~l~ 208 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPV--NLGLW 208 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEE--EEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEE--EEEEE
Confidence 358999999999999999999999999888889998766 56778888775 55665
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.20 E-value=1.6e-11 Score=65.91 Aligned_cols=47 Identities=28% Similarity=0.497 Sum_probs=36.5
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 58 (68)
....+||+++|+.+||||||++++.+..+ ..+.+|++..+ +.+.+++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~ 64 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN 64 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC
Confidence 44579999999999999999999999888 56678887544 5666665
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.18 E-value=1.1e-10 Score=62.65 Aligned_cols=47 Identities=21% Similarity=0.498 Sum_probs=37.7
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCe
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNF 59 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 59 (68)
...+||+++|+.+||||||++++.++. ...+.||++.. .+.+.+++.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~~ 62 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRGF 62 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETTE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECCE
Confidence 457999999999999999999999887 66788888844 356666643
No 94
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.78 E-value=2.8e-12 Score=69.96 Aligned_cols=56 Identities=29% Similarity=0.398 Sum_probs=44.7
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+||+++|+.+||||||++++.++.+...+.+|++..+ ...+.+++..+ .+++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~--~l~i~ 83 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPV--NLGLW 83 (204)
Confidence 4578999999999999999999999998888888887666 45566666653 45555
No 95
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.14 E-value=7.1e-11 Score=62.02 Aligned_cols=43 Identities=23% Similarity=0.495 Sum_probs=33.6
Q ss_pred eEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 58 (68)
+||+++|+++||||||++++.++.+.. +.||++. ....+..++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~ 43 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN 43 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEECSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEECC
Confidence 589999999999999999999888764 6788873 334555444
No 96
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.13 E-value=5.9e-11 Score=63.85 Aligned_cols=46 Identities=28% Similarity=0.522 Sum_probs=37.2
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 58 (68)
...+||+++|+.+||||||++++.++.+. .+.+|++.. .+.+.+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~ 59 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN 59 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC
Confidence 34689999999999999999999988887 677888743 35666665
No 97
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.13 E-value=6.1e-11 Score=63.91 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=29.4
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 58 (68)
....++++++|+.|+|||||++++.+..+...+.++.+.........+++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~ 69 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND 69 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC
Confidence 34579999999999999999999999887666667766555444444443
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.13 E-value=8.4e-11 Score=63.21 Aligned_cols=47 Identities=23% Similarity=0.472 Sum_probs=36.8
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCe
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNF 59 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 59 (68)
...+|++++|+++||||||++++.+..+ ..+.||+|.. .+.+.+++.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~~ 60 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQGF 60 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEETTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEECCE
Confidence 4579999999999999999999998765 3466888743 456666643
No 99
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.13 E-value=1.1e-10 Score=63.92 Aligned_cols=54 Identities=24% Similarity=0.256 Sum_probs=38.3
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCe-EEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNF-SSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~~w 68 (68)
...+||+++|+++||||||++++.+..+...+.+ ++.++. .+.+++. .. .+++|
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~--~~~i~ 59 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSA--IYKVNNNRGN--SLTLI 59 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEE--EEECSSTTCC--EEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeE--EEEecCCCcc--EEEEE
Confidence 4568999999999999999999999988877754 444553 3666643 32 45655
No 100
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.11 E-value=3.5e-10 Score=59.61 Aligned_cols=46 Identities=26% Similarity=0.500 Sum_probs=36.4
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCe
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNF 59 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 59 (68)
..+||+++|+.++|||||++++.++.+. .+.||++... +.+.+++.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~~ 51 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYKNL 51 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEECCE
Confidence 4689999999999999999999988875 4668887443 55666643
No 101
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.11 E-value=2.4e-10 Score=61.88 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=36.2
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 58 (68)
..+|++++|++|||||||++++.++.+. .+.+|++.. ...+.+++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~ 66 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN 66 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC
Confidence 4579999999999999999999998875 567888764 45677777
No 102
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.10 E-value=2.9e-10 Score=63.55 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=35.8
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCcc--ceeeEeEEEEEEECCeE
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKS--TIGVEFATRTLQVTNFS 60 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~ 60 (68)
...++|+++|++|+|||||++++++..+.....+ ++..++....+.+++..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 79 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE 79 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce
Confidence 4579999999999999999999999887666655 33444445566666655
No 103
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.09 E-value=6.7e-11 Score=63.14 Aligned_cols=46 Identities=30% Similarity=0.567 Sum_probs=36.9
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 58 (68)
...+||+++|+.+||||||++++.++.+ ..+.+|++.. ...+.+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~ 61 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN 61 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC
Confidence 4579999999999999999999998887 5667888743 35566655
No 104
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.09 E-value=1.5e-10 Score=62.84 Aligned_cols=46 Identities=22% Similarity=0.448 Sum_probs=35.9
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 58 (68)
...+||+++|+.+||||||++++.++.+. .+.||++. ..+.+..++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~--~~~~~~~~~ 72 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYKN 72 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE--EEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce--eEEEEEECC
Confidence 44689999999999999999999988876 45678773 334555554
No 105
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.09 E-value=1.5e-10 Score=63.09 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=32.9
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 58 (68)
..+|++++|++|||||||++++.++.+. .+.+|++... ..+.+++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~ 68 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG 68 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC
Confidence 4679999999999999999999988875 4678887653 5667776
No 106
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.08 E-value=4.3e-10 Score=58.73 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=31.4
Q ss_pred eEEEEECCCCChHHHHHHHHhcCcCc-CCCccceeeEeEEEEEEECCeE
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNEFC-LESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
+|++++|+.|+|||||++++.+..+. ....+....++....+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGR 50 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCce
Confidence 69999999999999999999987753 2223344445555666777654
No 107
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.06 E-value=3.7e-11 Score=65.26 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=34.4
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEE--EC-CeEEEEEEEeC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQ--VT-NFSSFTSLHFY 68 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~-~~~~~~~l~~w 68 (68)
..+..+||+++|+++||||||++++.+. +... ++++.++..+.+. ++ +..+ .+++|
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~--~l~i~ 74 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFV--NFQIW 74 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSC--CEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCee--EEEEE
Confidence 4566899999999999999999987764 3322 5555555443333 32 3433 45555
No 108
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.06 E-value=6.1e-10 Score=59.54 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=36.4
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCc-CCCccceeeEeEEEEEEECCeE
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFC-LESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
.+|++++|++|||||||++++.+..+. ....++...++....+.+++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 53 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP 53 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE
Confidence 479999999999999999999987643 1222344456666777888754
No 109
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.04 E-value=2.2e-10 Score=61.57 Aligned_cols=47 Identities=30% Similarity=0.495 Sum_probs=36.5
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCe
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNF 59 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 59 (68)
...+||+++|+.+||||||++++.++.+.. +.||++. ..+.+.+++.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~~~ 66 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYKNI 66 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEETTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEECCE
Confidence 457899999999999999999999888764 6678773 3455666543
No 110
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.04 E-value=2.7e-10 Score=65.05 Aligned_cols=58 Identities=24% Similarity=0.388 Sum_probs=34.5
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcC-cCcCCC-------ccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRN-EFCLES-------KSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~-~~~~~~-------~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
....++|+++|.+|+|||||++++.+. .+...+ .+|++.++....+..++... .+.+|
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~l~li 70 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQL--LLTIV 70 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCE--EEEEE
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEE--EEEEE
Confidence 345799999999999999999997654 444444 67777777656655555543 45554
No 111
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.03 E-value=7.6e-10 Score=62.97 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=35.7
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 58 (68)
...++|+++|+++||||||++++.+..+.....|.+..+.....+..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~ 51 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG 51 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC
Confidence 4578999999999999999999998776544445444444444455444
No 112
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.02 E-value=5.2e-10 Score=63.71 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=40.4
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeE
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
.++++++|++|+|||||++++.+..+.....+++..+.....+.+++..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~ 51 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE 51 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce
Confidence 5799999999999999999999988765566777777766777777665
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.02 E-value=4.6e-11 Score=73.48 Aligned_cols=44 Identities=32% Similarity=0.398 Sum_probs=29.3
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEE
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATR 52 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~ 52 (68)
....+||+++|+++||||||++++.+..+...+.+|++.++..+
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~ 81 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTK 81 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEe
Confidence 45679999999999999999999999999888889999888654
No 114
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.00 E-value=1e-09 Score=60.82 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=26.2
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCc
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
...+||+++|++|||||||++++++..+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~ 55 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD 55 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 45689999999999999999999988775
No 115
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.98 E-value=2.1e-09 Score=62.36 Aligned_cols=53 Identities=32% Similarity=0.386 Sum_probs=38.8
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCc--Cc-CCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNE--FC-LESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
..+|++++|+++||||||++++.++. +. ..+.+|++.++. .+.+++. +.+++|
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~~---~~l~i~ 57 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLGN---MTLNLW 57 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETTT---EEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCCc---eEEEEE
Confidence 35899999999999999999998763 32 356688888775 3444442 256666
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.96 E-value=4.1e-10 Score=60.30 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=29.9
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCcccee
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIG 46 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~ 46 (68)
.+||+++|+.|||||||++++.+..+...+.+++.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t 35 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT 35 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc
Confidence 36999999999999999999999988777766553
No 117
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.94 E-value=1.5e-09 Score=61.72 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=38.7
Q ss_pred eEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeE
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
.+|+++|+++||||||++++.+..+.....|.+..+.....+.+++..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~ 49 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHL 49 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeE
Confidence 589999999999999999999887665555666666766777777764
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.94 E-value=4.1e-09 Score=56.46 Aligned_cols=41 Identities=27% Similarity=0.245 Sum_probs=31.4
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEe
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEF 49 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~ 49 (68)
.....+|++++|+.|+|||||++++.+..+ ..+.++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~ 59 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTR 59 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCcc
Confidence 345678999999999999999999998874 34445555444
No 119
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.93 E-value=4e-10 Score=66.45 Aligned_cols=48 Identities=23% Similarity=0.167 Sum_probs=36.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC---CCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL---ESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
|++++|++|||||||++++.++.++. .+.||+|.++.. ++ .. +++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~--v~LqIW 51 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TL--IDLAVM 51 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SS--SCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cE--EEEEEE
Confidence 78999999999999999888665543 256899988842 23 22 478888
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.91 E-value=1.7e-09 Score=61.85 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=38.3
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeE
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
.++|+++|++++|||||++++.+..+.....+.+..+.....+..++..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~ 51 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQ 51 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCc
Confidence 4899999999999999999999887655555666556656666666654
No 121
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.90 E-value=4.8e-09 Score=59.17 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=35.8
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCc-CcCCCccc-eeeEeEEEEEEECCeE
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNE-FCLESKST-IGVEFATRTLQVTNFS 60 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~ 60 (68)
...++|+++|..|+|||||++++++.. +...+.++ +..+.....+..++..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 72 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE 72 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCE
Confidence 356899999999999999999999876 55444443 3334444455566654
No 122
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.89 E-value=1.4e-09 Score=59.67 Aligned_cols=42 Identities=17% Similarity=0.331 Sum_probs=31.6
Q ss_pred cCCceeeEEEEECCCCChHHHHHHHHhcCcCcC---CCccceeeE
Q 035301 7 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCL---ESKSTIGVE 48 (68)
Q Consensus 7 ~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~---~~~~t~~~~ 48 (68)
......++++++|++|+|||||++++.+..+.. .+.++++.+
T Consensus 7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~ 51 (218)
T 1nrj_B 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD 51 (218)
T ss_dssp ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT
T ss_pred CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE
Confidence 334567999999999999999999999887754 355665543
No 123
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=4e-09 Score=62.51 Aligned_cols=57 Identities=21% Similarity=0.375 Sum_probs=33.0
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcC-cCcCCCc--------cceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRN-EFCLESK--------STIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~-~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...++|+++|++|+|||||++++.+. .+...+. +|++.++....+..++.. +.+.+|
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~--~~l~i~ 100 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVK--LRLTVV 100 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEE--EEEEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcc--cceEEE
Confidence 45689999999999999999997653 3433332 566665544444444544 355555
No 124
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.86 E-value=2.6e-09 Score=60.32 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=31.0
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeE--eEEEEEEECCeE
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVE--FATRTLQVTNFS 60 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~ 60 (68)
...++|+++|.+|||||||++++.+..+.....++.+.. .....+..++..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~ 71 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCH 71 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEE
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcE
Confidence 457999999999999999999999877654433332221 222344555544
No 125
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.85 E-value=2.3e-09 Score=62.20 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=21.9
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcC-cCcCCC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRN-EFCLES 41 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~-~~~~~~ 41 (68)
....++++++|++|+|||||++++.+. .++..+
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC--------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 345789999999999999999998875 565544
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.84 E-value=2.4e-09 Score=58.82 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=25.7
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
....++|+++|+.|+|||||++++.+..+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~ 54 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKR 54 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSS
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 44578999999999999999999998863
No 127
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.83 E-value=3.6e-09 Score=61.97 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=34.7
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 58 (68)
..+||+++|+.+||||||++++.+..+... .||++..+. .+..++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~~ 208 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYKN 208 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEETT
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecCc
Confidence 357999999999999999999999887654 378776653 344444
No 128
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.83 E-value=3.1e-09 Score=60.96 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=26.0
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCcc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKS 43 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~ 43 (68)
..+||+++|+++||||||++++.+..+.....|
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p 34 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP 34 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC
Confidence 358999999999999999999998764333334
No 129
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.81 E-value=1.9e-09 Score=58.77 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=26.2
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEE
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 56 (68)
...+++++|++|+|||||++++++..+...+.++.|..+....+.+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~ 70 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 70 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe
Confidence 4579999999999999999999988765555666665543333333
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.79 E-value=1.4e-08 Score=61.29 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=33.7
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCc-CCCccceeeEeEEEEEEECCeE
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFC-LESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
+..+|++++|+++||||||++++.+..+. ....+....+.....+.+++..
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~ 224 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE 224 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE
Confidence 35689999999999999999999987763 2333444445555677777765
No 131
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.78 E-value=4.4e-09 Score=57.96 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=34.1
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeE
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFA 50 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~ 50 (68)
..++++++|++|||||||+++++...+...+.++++.++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 4689999999999999999999987776666778887764
No 132
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.78 E-value=1.2e-08 Score=61.63 Aligned_cols=30 Identities=27% Similarity=0.647 Sum_probs=25.9
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCc
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
....++++++|++|+|||||++.+++..++
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCC
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 345789999999999999999999988763
No 133
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.78 E-value=5.2e-09 Score=56.26 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=26.2
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
...++|+++|+.|||||||++++.+..+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~ 75 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP 75 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc
Confidence 457899999999999999999999887654
No 134
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.77 E-value=2e-08 Score=61.17 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=36.6
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCe
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNF 59 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 59 (68)
...+|++++|+++||||||++++.+..+. .+.+|++..+. .+..++.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~~~~ 366 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYKNV 366 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEESSSC
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEeCCE
Confidence 34689999999999999999999988865 45688886653 4444443
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.74 E-value=1.7e-08 Score=61.00 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=30.1
Q ss_pred eEEEEECCCCChHHHHHHHHhcCcCc-CCCccceeeEeEEEEEEECCeE
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNEFC-LESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
.+|+++|.++||||||++++++.... ....|.+..++....+.+++..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~ 50 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT 50 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE
Confidence 48999999999999999999987643 2233444455656777777765
No 136
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.73 E-value=4.9e-08 Score=55.38 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=24.8
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
..++|+++|+.|+|||||++++.+..+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998774
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.72 E-value=3.6e-08 Score=59.54 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=32.5
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCc-CCCccceeeEeEEEEEEECCeE
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFC-LESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
..+|++++|++|||||||++++++..+. ....+....+.....+.+++..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 4689999999999999999999987642 1222333334444566667664
No 138
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.65 E-value=2.7e-08 Score=56.61 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=24.8
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
..++|+++|+.|+|||||++++++..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~ 64 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERV 64 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 478999999999999999999998775
No 139
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.59 E-value=9.1e-08 Score=58.04 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=36.5
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCc-CcCCCccceeeEeEEEEEEECCeEEEEEEEeC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNE-FCLESKSTIGVEFATRTLQVTNFSSFTSLHFY 68 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~~w 68 (68)
...+|++++|++++|||||++++.+.. ......++...+.....+..++.. +++|
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~----~~l~ 248 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE----FVIV 248 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEE----EEET
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCce----EEEE
Confidence 457899999999999999999999765 223333444555555677777764 5565
No 140
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.56 E-value=8.3e-08 Score=58.82 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=27.7
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCc-CCCccceeeEeEEEEEEECCeE
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFC-LESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
.++|+++|+++||||||++++.+.... ....+....++....+.+++..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~ 282 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTM 282 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE
Confidence 478999999999999999999987532 2333444455555677777754
No 141
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.56 E-value=4.2e-07 Score=52.76 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.6
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCc
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
....+++++|.++||||||++++++..+.
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ 33 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVA 33 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCcee
Confidence 34678999999999999999999988774
No 142
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.53 E-value=1.5e-07 Score=55.94 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=30.0
Q ss_pred eE-EEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeE
Q 035301 13 FK-VVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 13 ~k-i~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
++ ++++|++|+|||||++++.+..+.....+....+.....+.+++..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 44 9999999999999999999877643222222234555677777754
No 143
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.52 E-value=3.9e-08 Score=60.08 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=34.3
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCc-CCCccceeeEeEEEEEEECCeE
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFC-LESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
.++++++|++++|||||++++.+..+. ....++...++....+.+++..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~ 273 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP 273 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE
Confidence 578999999999999999999986543 2233444444444555666654
No 144
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.51 E-value=2.7e-08 Score=60.24 Aligned_cols=52 Identities=12% Similarity=0.274 Sum_probs=31.3
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcCcCc-CCCccceeeEeEEEEEEECCe
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFC-LESKSTIGVEFATRTLQVTNF 59 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~ 59 (68)
.....++|+++|+.++|||||++++.+..+. .+..+....+...+.+.+++.
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~ 82 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI 82 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC
Confidence 3456789999999999999999999988763 222333334455566676665
No 145
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.49 E-value=7.5e-07 Score=51.72 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=27.2
Q ss_pred cCCceeeEEEEECCCCChHHHHHHHHhcCcCc
Q 035301 7 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 7 ~~~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
+.+...-.++++|.++||||||++++.+..+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~ 36 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS 36 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 45567889999999999999999999998765
No 146
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.46 E-value=5.4e-08 Score=59.03 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=26.3
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEE
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQ 55 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~ 55 (68)
..+|+++|.+|||||||++++.+..+. ....+.|.........
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~ 65 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSS 65 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEE
Confidence 579999999999999999999987764 2233445444333333
No 147
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.41 E-value=5.7e-07 Score=53.04 Aligned_cols=28 Identities=36% Similarity=0.404 Sum_probs=24.8
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
...++++++|.+|||||||++++++..+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~ 192 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP 192 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467999999999999999999998764
No 148
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.40 E-value=7.8e-08 Score=59.03 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=35.9
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCc-CCCccceeeEeEEEEEEECCeE
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFC-LESKSTIGVEFATRTLQVTNFS 60 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~ 60 (68)
.++|+++|.++||||||++++.+..+. ....+....++....+.+++..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~ 292 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL 292 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE
Confidence 379999999999999999999987542 2223433445656777777765
No 149
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.40 E-value=1.1e-07 Score=57.37 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=23.7
Q ss_pred eEEEEECCCCChHHHHHHHHhcCcCcCCCccceee
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGV 47 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~ 47 (68)
++|+++|.++||||||++++++..+. ...++.|.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~ 37 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGV 37 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCC
Confidence 68999999999999999999987653 23344444
No 150
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.39 E-value=1.3e-07 Score=54.16 Aligned_cols=29 Identities=28% Similarity=0.630 Sum_probs=23.5
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLE 40 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~ 40 (68)
.|+++++|++|+|||||++.+++...+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~ 30 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRK 30 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC---
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 58999999999999999999998655443
No 151
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.35 E-value=3.3e-07 Score=52.30 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=26.0
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcCc
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
...++|+++|++++|||||++++.+..+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 45689999999999999999999998873
No 152
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.31 E-value=3.1e-07 Score=54.82 Aligned_cols=25 Identities=36% Similarity=0.607 Sum_probs=22.6
Q ss_pred eEEEEECCCCChHHHHHHHHhcCcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
++++++|.++||||||++++.+..+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~ 27 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI 27 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 6899999999999999999998664
No 153
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.30 E-value=6.2e-07 Score=54.03 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=26.6
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTN 58 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 58 (68)
..+++.++|.++||||||++++.+..+.....|....+.....+.+++
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 357999999999999999999998765433333322233333444443
No 154
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.25 E-value=4.6e-06 Score=50.57 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.7
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhc
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
....++++++|..++|||||++++..
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~ 39 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMY 39 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHH
Confidence 34578999999999999999999954
No 155
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.24 E-value=1.1e-06 Score=51.75 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=25.0
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
...+|+++|++|+|||||++++.+..|.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~l 60 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFL 60 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCS
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcC
Confidence 3559999999999999999999998774
No 156
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.23 E-value=2.5e-06 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=20.9
Q ss_pred eEEEEECCCCChHHHHHHHHhcCc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
+||+++|.++||||||++++.+..
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 589999999999999999999876
No 157
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.23 E-value=8.3e-07 Score=52.48 Aligned_cols=25 Identities=40% Similarity=0.413 Sum_probs=22.0
Q ss_pred eEEEEECCCCChHHHHHHHHhcCcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
.+|+++|.++||||||++++.+...
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~ 183 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKP 183 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCC
Confidence 4688999999999999999997653
No 158
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.22 E-value=2.9e-08 Score=61.61 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=33.8
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEE
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 56 (68)
..++++++|..++|||||++++.+..+.....+++..++....+..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~ 48 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL 48 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEe
Confidence 3578999999999999999999987776555565555443333333
No 159
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.20 E-value=1.1e-06 Score=47.57 Aligned_cols=23 Identities=30% Similarity=0.733 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
+++++|++|+|||||++.+++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988643
No 160
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.19 E-value=2.4e-06 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.6
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
..++.++|.+|+|||||++.+.+...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 56999999999999999999998665
No 161
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.17 E-value=7.1e-06 Score=47.50 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=24.6
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
...+++++|.+|+|||||++++++..+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~ 34 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS 34 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc
Confidence 4568999999999999999999987753
No 162
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.13 E-value=1.3e-05 Score=48.08 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=29.5
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcC---cCcCCCcc--ceeeEeEEEEE
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRN---EFCLESKS--TIGVEFATRTL 54 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~---~~~~~~~~--t~~~~~~~~~~ 54 (68)
...++++++|..++|||||++++.+. .+.++..+ |+...|....+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~ 55 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEI 55 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccccccc
Confidence 45689999999999999999999843 34444444 67666654443
No 163
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.13 E-value=1.6e-06 Score=48.73 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 57899999999999999999865443
No 164
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.13 E-value=1.7e-06 Score=46.51 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999863
No 165
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.13 E-value=2.6e-06 Score=48.65 Aligned_cols=26 Identities=19% Similarity=0.485 Sum_probs=23.0
Q ss_pred eEEEEECCCCChHHHHHHHHhcCcCc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
++++++|.+|||||||++++.+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc
Confidence 69999999999999999999987653
No 166
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.12 E-value=2e-06 Score=49.50 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=25.3
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
...++|+++|+.++|||||++++++..+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 4567999999999999999999998876
No 167
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.10 E-value=2e-06 Score=47.03 Aligned_cols=21 Identities=52% Similarity=0.759 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.++++|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999886
No 168
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.10 E-value=3.6e-06 Score=47.47 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=24.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESK 42 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~~ 42 (68)
.+.++|++|+|||||++.+++...+.++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 58 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGE 58 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 68899999999999999999876554443
No 169
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.10 E-value=9.3e-06 Score=49.82 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=23.7
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
..++++++|..++|||||++++.+..
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~ 43 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA 43 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC
Confidence 36899999999999999999999766
No 170
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.09 E-value=1.7e-06 Score=47.39 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.8
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
...+++++|..|+|||||+++++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998653
No 171
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.09 E-value=1.5e-06 Score=51.18 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=25.3
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
..++|+++|++++|||||++++.+..+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4579999999999999999999998873
No 172
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.08 E-value=2.5e-06 Score=48.21 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=22.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 57899999999999999999865443
No 173
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.08 E-value=3.4e-06 Score=48.30 Aligned_cols=28 Identities=36% Similarity=0.389 Sum_probs=23.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLES 41 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~ 41 (68)
.+.++|++|+|||||++.+++...+..+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G 66 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSPSHG 66 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 5789999999999999999987655444
No 174
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.08 E-value=2.3e-06 Score=46.88 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
-+.++|++|+|||||++.+++..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999998643
No 175
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.08 E-value=2.1e-06 Score=47.98 Aligned_cols=26 Identities=38% Similarity=0.359 Sum_probs=22.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 57899999999999999999865443
No 176
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.08 E-value=2.4e-06 Score=48.74 Aligned_cols=26 Identities=35% Similarity=0.368 Sum_probs=22.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 57899999999999999999865443
No 177
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.08 E-value=2.8e-06 Score=45.34 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=22.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESK 42 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~~ 42 (68)
.+.++|++|+|||||++.+++.. +....
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 57899999999999999998765 44443
No 178
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.07 E-value=2.5e-06 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
-++++|++|+|||||++.+++..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999998743
No 179
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.06 E-value=2.9e-06 Score=48.03 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 67899999999999999999865443
No 180
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.06 E-value=2.7e-06 Score=48.35 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 57899999999999999999865443
No 181
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.06 E-value=2.7e-06 Score=45.90 Aligned_cols=21 Identities=43% Similarity=0.724 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 035301 15 VVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 15 i~~iG~~~vGKtsl~~~~~~~ 35 (68)
++++|++|+||||+++.+++.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999864
No 182
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.05 E-value=2.8e-06 Score=48.89 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
.+.++|++|+|||||++.+++...+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5789999999999999999986544
No 183
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.04 E-value=3.2e-06 Score=48.37 Aligned_cols=26 Identities=42% Similarity=0.415 Sum_probs=22.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Confidence 57899999999999999999865443
No 184
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.03 E-value=3.8e-06 Score=47.04 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=22.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLE 40 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~ 40 (68)
.+.++|++|+|||||++.+++...+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 62 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEPSE 62 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCc
Confidence 578999999999999999998654443
No 185
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.03 E-value=3.2e-06 Score=47.61 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 57899999999999999999865443
No 186
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.03 E-value=3.7e-06 Score=48.45 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 57899999999999999999865443
No 187
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.03 E-value=3.5e-06 Score=46.93 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 57899999999999999999865443
No 188
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.03 E-value=3.4e-06 Score=45.71 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-++++|++|+||||+++.+++.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999864
No 189
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.03 E-value=3.3e-06 Score=46.78 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
.++++|++|+|||||++.+++..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999998743
No 190
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.02 E-value=6e-06 Score=51.81 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.6
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhc
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
....++|+++|..++|||||+++++.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHH
Confidence 34568999999999999999999963
No 191
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.02 E-value=3.8e-06 Score=53.26 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=23.7
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCc
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
.+...+++++|..|+|||||++++++..
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 3456799999999999999999998543
No 192
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.02 E-value=3.7e-06 Score=47.93 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 57899999999999999999865443
No 193
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.02 E-value=4e-06 Score=48.06 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 57899999999999999999865443
No 194
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.00 E-value=5.9e-06 Score=50.03 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=26.4
Q ss_pred eEEEEECCCCChHHHHHHHHhcCcCcCCCccce
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTI 45 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~ 45 (68)
..+.++|++|+|||||++.+++...+..+..++
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~ 102 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT 102 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEE
Confidence 478999999999999999999866555554433
No 195
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.99 E-value=3.3e-06 Score=50.34 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=23.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLES 41 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~ 41 (68)
.+.++|++|+|||||++.+++...+.++
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p~~G 59 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQPDSG 59 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 4789999999999999999987655443
No 196
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.99 E-value=3.3e-06 Score=47.54 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=21.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
.+.++|++|+|||||++.+++...+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6789999999999999999986543
No 197
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.99 E-value=3.7e-06 Score=51.16 Aligned_cols=26 Identities=31% Similarity=0.774 Sum_probs=22.8
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
.++++++|++|+|||||++.+++..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccc
Confidence 35699999999999999999998754
No 198
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.97 E-value=4.8e-06 Score=47.59 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p~ 60 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEPT 60 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 57899999999999999999865443
No 199
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.97 E-value=1.6e-05 Score=50.72 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=27.9
Q ss_pred CCCCCCcCCceeeEEEEECCCCChHHHHHHHHhc
Q 035301 1 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 1 m~~~~~~~~~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
|+.......+...+++++|..++|||||+++++.
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHHHHH
Confidence 5544444567789999999999999999999984
No 200
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.97 E-value=5.3e-06 Score=47.49 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLES 41 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~ 41 (68)
.+.++|++|+|||||++.+++.. +.++
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p~~G 58 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-PYSG 58 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence 57899999999999999999876 5443
No 201
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.97 E-value=4.6e-06 Score=49.65 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=23.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLES 41 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~ 41 (68)
.+.++|++|+|||||++.+++...+.++
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p~~G 70 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERPTKG 70 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence 5789999999999999999987654433
No 202
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.97 E-value=1.1e-05 Score=50.32 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=26.5
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCcCc
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
.+..++|+++|..++|||||++++++..+.
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 345789999999999999999999998763
No 203
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.97 E-value=5.7e-06 Score=45.28 Aligned_cols=20 Identities=45% Similarity=0.745 Sum_probs=18.5
Q ss_pred EEEECCCCChHHHHHHHHhc
Q 035301 15 VVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 15 i~~iG~~~vGKtsl~~~~~~ 34 (68)
|+++|++|+|||||+++++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 204
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.97 E-value=4.8e-06 Score=50.02 Aligned_cols=28 Identities=39% Similarity=0.466 Sum_probs=23.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLES 41 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~ 41 (68)
.+.++|++|+|||||++.+++...+.++
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p~~G 58 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETITSG 58 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCe
Confidence 4789999999999999999987654433
No 205
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.96 E-value=4.9e-06 Score=44.65 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-.++++|++|+||||+++.+++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999875
No 206
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.96 E-value=5e-06 Score=49.57 Aligned_cols=27 Identities=33% Similarity=0.309 Sum_probs=22.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLE 40 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~ 40 (68)
.+.++|++|+|||||++.+++...+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~ 57 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKPTS 57 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCc
Confidence 578999999999999999998765443
No 207
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.95 E-value=3e-05 Score=46.52 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=31.8
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCcCCCccceeeEeEEEEEEECCeEE
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVTNFSS 61 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 61 (68)
...|.++|.++||||||++++.+..-.-...|..-.+-....+.+++.++
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 46899999999999999999997543222212111222234556666654
No 208
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.95 E-value=5.8e-06 Score=45.66 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.0
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
--++++|++|+|||||++.++..
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 36789999999999999999853
No 209
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.95 E-value=5.3e-06 Score=49.61 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=23.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLES 41 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~ 41 (68)
.+.++|++|+|||||++.+++...+.++
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEPSRG 58 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence 5789999999999999999987654443
No 210
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.95 E-value=5.3e-06 Score=49.42 Aligned_cols=27 Identities=30% Similarity=0.261 Sum_probs=22.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLE 40 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~ 40 (68)
.+.++|++|+|||||++.+++...+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~ 57 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKPTS 57 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCCCc
Confidence 578999999999999999998765443
No 211
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.94 E-value=2.6e-05 Score=46.76 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=32.1
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcC---cCcCCCcc--ceeeEeEEEEE
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRN---EFCLESKS--TIGVEFATRTL 54 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~---~~~~~~~~--t~~~~~~~~~~ 54 (68)
....++++++|..++|||||++++.+. .+.++..+ |+...|....+
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~ 57 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEI 57 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeec
Confidence 356789999999999999999999843 34444444 66666544333
No 212
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.94 E-value=4.4e-06 Score=49.58 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLE 40 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~ 40 (68)
.+.++|++|+|||||++.+++...+.+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p~~ 54 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVPDS 54 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCSE
T ss_pred EEEEECCCCccHHHHHHHHHcCCCCCC
Confidence 578999999999999999998765443
No 213
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.94 E-value=5.7e-06 Score=49.50 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=22.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLE 40 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~ 40 (68)
.+.++|++|+|||||++.+++...+.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p~~ 65 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEPTE 65 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCc
Confidence 578999999999999999998765443
No 214
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.94 E-value=1.3e-05 Score=48.01 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=24.6
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCc
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
....++|+++|..++|||||++++.+..
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 4457899999999999999999999754
No 215
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.93 E-value=9.1e-06 Score=49.71 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.5
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
..+|++++|..++|||||++++++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999999754
No 216
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.92 E-value=6.6e-06 Score=43.96 Aligned_cols=19 Identities=53% Similarity=0.765 Sum_probs=16.8
Q ss_pred EEEEECCCCChHHHHHHHH
Q 035301 14 KVVLIGDSGVGKSNLLSRF 32 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~ 32 (68)
-++++|++|+|||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999943
No 217
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.92 E-value=5.8e-06 Score=48.31 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCC
Confidence 68999999999999999999765443
No 218
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.92 E-value=7.3e-06 Score=45.00 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
-++++|++|+||||+++.+++..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999998653
No 219
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.92 E-value=7.9e-06 Score=46.39 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
.+.++|++|+|||||++.+++...
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999998654
No 220
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.91 E-value=7.4e-06 Score=48.97 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+.+...+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p~ 81 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERPT 81 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCCC
Confidence 57899999999999999999865543
No 221
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.91 E-value=8.9e-06 Score=47.10 Aligned_cols=29 Identities=34% Similarity=0.319 Sum_probs=22.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESK 42 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~~ 42 (68)
.+.++|++|+|||||++.+.+...+..+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~~G~ 199 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLRVSE 199 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC---
T ss_pred eEEEECCCCCcHHHHHHHhcccccccccc
Confidence 57899999999999999999866554443
No 222
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.90 E-value=6.8e-06 Score=45.04 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.3
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
....+.++|++|+|||||++.+.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988753
No 223
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.90 E-value=9.4e-06 Score=46.12 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~p~ 58 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHRPI 58 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 57899999999999999999865443
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.89 E-value=1e-05 Score=46.60 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=23.5
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
..++++++|.++||||||++++.+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 45799999999999999999999765
No 225
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.89 E-value=4.2e-06 Score=49.71 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=23.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLES 41 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~ 41 (68)
.+.++|++|+|||||++.+++...+.++
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p~~G 60 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVPSTG 60 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 5789999999999999999987654444
No 226
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.88 E-value=1e-05 Score=46.23 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.+.++|++|+|||||++.+++.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999986
No 227
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.88 E-value=9.1e-06 Score=46.03 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.+.++|++|+|||||++.+++.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999985
No 228
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.88 E-value=1.6e-05 Score=47.43 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
.++++|++|+|||||++.+++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998665
No 229
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.86 E-value=1.1e-05 Score=46.01 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
.+.++|++|+|||||++.+++..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999999854
No 230
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.86 E-value=9.9e-06 Score=44.28 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
++.++|++|+||||+++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999988754
No 231
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.85 E-value=1.2e-05 Score=47.52 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.1
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
.-++.++|++|+|||||++.+++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 232
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.84 E-value=2e-05 Score=45.74 Aligned_cols=29 Identities=45% Similarity=0.576 Sum_probs=23.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCCcc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKS 43 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~ 43 (68)
.++++|++|+|||||++.+. ...+..+..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~i 195 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQEV 195 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSCC
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCccccc
Confidence 57899999999999999999 655444443
No 233
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.84 E-value=7.4e-06 Score=47.47 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
.+.++|++|+|||||++.+++...+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5789999999999999999986543
No 234
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.84 E-value=9.1e-06 Score=48.54 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.8
Q ss_pred eEEEEECCCCChHHHHHHHHhcCc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
+++.++|.+|+|||||++++.+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998754
No 235
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.82 E-value=1.3e-05 Score=43.05 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.++++|++|+||||+++.+++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 236
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.81 E-value=1.5e-05 Score=44.22 Aligned_cols=20 Identities=35% Similarity=0.752 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 035301 14 KVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~ 33 (68)
-++++|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999887
No 237
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.81 E-value=1.8e-05 Score=47.99 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
.+.++|++|+|||||++++.+..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 57899999999999999999764
No 238
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.81 E-value=1.4e-05 Score=43.28 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.0
Q ss_pred eEEEEECCCCChHHHHHHHHhcCc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
..++++|++|+||||+++.+.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999998754
No 239
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.81 E-value=1.8e-05 Score=44.31 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=19.7
Q ss_pred eEEEEECCCCChHHHHHHHHh
Q 035301 13 FKVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~ 33 (68)
..++++|++|+||||+++.++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 240
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.81 E-value=2.4e-05 Score=49.86 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=24.5
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
..++|+++|+.++|||||++++++..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~ 94 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENL 94 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998764
No 241
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.80 E-value=9.1e-06 Score=45.02 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=23.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCCcc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKS 43 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~ 43 (68)
.+.++|++|+|||||++.+++. .+.++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 5789999999999999999987 5544433
No 242
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.79 E-value=1.6e-05 Score=42.02 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.8
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..++++|.+|+||||+.+.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 243
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.79 E-value=2e-05 Score=46.79 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=25.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCCccce
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTI 45 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~ 45 (68)
.++++|++|+|||||++.+++..-+..+..++
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~i 208 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPFDQRLITI 208 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCCceEEEE
Confidence 78999999999999999999765444444443
No 244
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.79 E-value=1.6e-05 Score=43.43 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.6
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.-++++|++|+||||+.+.+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 245
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.79 E-value=1e-05 Score=50.87 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=23.4
Q ss_pred eEEEEECCCCChHHHHHHHHhcCcCc-CCCccce
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNEFC-LESKSTI 45 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~~~-~~~~~t~ 45 (68)
..++++|++|+|||||++.+++..++ .++..++
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~ 79 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTR 79 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-------CCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEE
Confidence 35999999999999999999998655 3454443
No 246
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.79 E-value=1.5e-05 Score=43.45 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
..+.++|++|+||||+++.+.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988763
No 247
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.79 E-value=1.6e-05 Score=43.25 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..++++|++|+||||+++.+++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 248
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.78 E-value=1.4e-05 Score=43.85 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-+.++|++|+|||||++.+++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 249
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.78 E-value=2e-05 Score=46.58 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=21.5
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+.++|.+|+|||||++++.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999986
No 250
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.76 E-value=2e-05 Score=46.27 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCCccce
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTI 45 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~ 45 (68)
.++++|++|+|||||++.+++...+.+...++
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i 204 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 204 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE
Confidence 68999999999999999999865544444443
No 251
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.75 E-value=1e-05 Score=44.83 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=14.9
Q ss_pred EEEEECCCCChHHHHHHHHh-cC
Q 035301 14 KVVLIGDSGVGKSNLLSRFT-RN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~-~~ 35 (68)
-++++|++|+||||+++.++ +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58899999999999999999 54
No 252
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.75 E-value=2.2e-05 Score=41.27 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.|++.|.+|+||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
No 253
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.75 E-value=1.8e-05 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
.++++|++|+||||+++.+++..
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhC
Confidence 68999999999999999988643
No 254
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.74 E-value=2.2e-05 Score=41.76 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
+++++|.+|+||||+...++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 255
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.74 E-value=1.6e-05 Score=42.43 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHhcCc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
-.+++.|++|+|||+|+..+++.-
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999887643
No 256
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.73 E-value=2.2e-05 Score=45.89 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.+.++|++|+|||||++.+++.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999988753
No 257
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.72 E-value=3.2e-05 Score=48.26 Aligned_cols=31 Identities=35% Similarity=0.387 Sum_probs=25.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCCccc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKST 44 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t 44 (68)
.+.++|++|+|||||++.+++...+.++...
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 401 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 6889999999999999999987655554433
No 258
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.72 E-value=6.9e-06 Score=48.05 Aligned_cols=26 Identities=38% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.++++|++|+|||||++.+.+...+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-----
T ss_pred EEEEECCCCCCHHHHHHHhccccccc
Confidence 78999999999999999999765443
No 259
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.72 E-value=1.7e-05 Score=46.22 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.2
Q ss_pred eEEEEECCCCChHHHHHHHHhcCcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
-.++++|++|+||||++..+++..-
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4788999999999999999886443
No 260
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.72 E-value=2.2e-05 Score=45.90 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.6
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
...-+.++|++|+|||||++.+.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3467899999999999999998864
No 261
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.72 E-value=2.4e-05 Score=42.58 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.0
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.-++++|++|+||||+.+.+.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999988753
No 262
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.71 E-value=1.6e-06 Score=53.55 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=25.1
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCcCcCC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNEFCLE 40 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~~~~~ 40 (68)
..++++++|..++|||||++++.+..+...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~ 32 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASG 32 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccc
Confidence 457899999999999999999987655433
No 263
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.70 E-value=2.6e-05 Score=42.31 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.1
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.+|+++|.+|+||||+.+.+++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 264
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.69 E-value=4.5e-05 Score=47.41 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=23.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLES 41 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~ 41 (68)
.+.++|++|+|||||++.+++...+..+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~p~~G 76 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLIPNLC 76 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 6889999999999999999986554433
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=3.2e-05 Score=42.04 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.7
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-.++++|.+|+||||+...++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999998874
No 266
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.67 E-value=2.8e-05 Score=46.79 Aligned_cols=23 Identities=52% Similarity=0.720 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
.+.++|++|+|||||++.+++..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68899999999999999999753
No 267
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.67 E-value=3.1e-05 Score=41.09 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..++++|.+|+||||+.+.+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 268
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.67 E-value=6.3e-05 Score=45.47 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.0
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcCc
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
....++++++|..++|||||++++++..
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhc
Confidence 3456899999999999999999998543
No 269
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.66 E-value=3.2e-05 Score=41.99 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.7
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|+++|.+|+||||+.+.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 270
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.66 E-value=2.6e-05 Score=48.65 Aligned_cols=26 Identities=42% Similarity=0.408 Sum_probs=22.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
++.++|++|+|||||++.+++...+.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p~ 396 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDID 396 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhhccCCC
Confidence 78999999999999999999865443
No 271
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.66 E-value=3.1e-05 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=20.9
Q ss_pred eEEEEECCCCChHHHHHHHHhcCc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
--++++|++|+||||++..+++..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999988643
No 272
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.65 E-value=3.9e-05 Score=42.14 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..+.++|++|+||||+.+.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.64 E-value=3.8e-05 Score=40.70 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-|++.|.+|+||||+.+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 274
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.64 E-value=1.8e-05 Score=42.66 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.+.++|++|+|||||+..+++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998864
No 275
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.63 E-value=3.3e-05 Score=47.68 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
.+.++|++|+|||||++.+++..
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999988643
No 276
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.63 E-value=4.2e-05 Score=40.78 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.4
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|.+|+||||+...+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
No 277
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.63 E-value=5.2e-05 Score=41.20 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
+.+.++|.+|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999986
No 278
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.63 E-value=2.4e-05 Score=46.06 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=22.4
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
.--++++|++|+||||++..+++...+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999998865433
No 279
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.62 E-value=3.8e-05 Score=43.03 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.1
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..+.++|++|+||||+++.+++
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 280
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.62 E-value=4.4e-05 Score=41.71 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.4
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
++|++.|.+|+||||+...++.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 281
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.62 E-value=5.3e-05 Score=47.78 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.2
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
...++|+++|..++|||||++++++.
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHh
Confidence 34689999999999999999999865
No 282
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.61 E-value=4.8e-05 Score=40.95 Aligned_cols=21 Identities=29% Similarity=0.673 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.|++.|.+|+||||+.+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998875
No 283
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.61 E-value=4.2e-05 Score=42.85 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=19.3
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 035301 15 VVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 15 i~~iG~~~vGKtsl~~~~~~~ 35 (68)
++++|++|+|||+|++.+++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998863
No 284
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.61 E-value=9.8e-05 Score=48.05 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.6
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.....+|+++|..++|||||+++++..
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHh
Confidence 445789999999999999999999853
No 285
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.61 E-value=6.3e-05 Score=46.85 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=23.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLES 41 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~ 41 (68)
-+.++|++|+|||||++.+++...+..+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~p~~G 54 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEIIPNFG 54 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 5789999999999999999986655444
No 286
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.60 E-value=6.4e-05 Score=47.47 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=23.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLES 41 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~ 41 (68)
.+.++|++|+|||||++.+++...+..+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P~~G 132 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKPNLG 132 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 5789999999999999999986655444
No 287
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.60 E-value=5.3e-05 Score=41.43 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
++|++.|.+|+||||+...++.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 288
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.59 E-value=4.8e-05 Score=44.79 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.6
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+.++|++|+|||||++.+.+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 289
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.59 E-value=4.8e-05 Score=41.14 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.1
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.-++++|.+|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999998853
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.59 E-value=5.3e-05 Score=40.03 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.8
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999886
No 291
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.59 E-value=4.8e-05 Score=40.07 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=19.6
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-.+++.|++|+|||+++..++..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999888753
No 292
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.59 E-value=5.6e-05 Score=39.52 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.2
Q ss_pred eEEEEECCCCChHHHHHHHH
Q 035301 13 FKVVLIGDSGVGKSNLLSRF 32 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~ 32 (68)
.-|++.|.+|+||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999988
No 293
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.58 E-value=8.3e-05 Score=43.74 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.5
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhc
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+-+.++|++|+||||+++.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 294
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.57 E-value=5.1e-05 Score=41.44 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-++++|++|+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999884
No 295
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.57 E-value=5e-05 Score=43.47 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 035301 15 VVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 15 i~~iG~~~vGKtsl~~~~~~~ 35 (68)
++++|++|+|||+|++.+++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999998863
No 296
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.56 E-value=8.3e-05 Score=46.91 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=23.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLES 41 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~ 41 (68)
.+.++|++|+|||||++.+++...+..+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~p~~G 146 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLIPNLC 146 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCCCC
Confidence 6889999999999999999986554443
No 297
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.56 E-value=5.2e-05 Score=40.41 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.3
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-.+++|++|+|||+|+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999998754
No 298
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.55 E-value=2.8e-05 Score=48.65 Aligned_cols=26 Identities=38% Similarity=0.365 Sum_probs=22.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+++...+.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~p~ 397 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYDPA 397 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 68899999999999999999865443
No 299
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.55 E-value=4.1e-05 Score=46.90 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
.++++|++|+|||||++.+++...+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred EEEEECCCCCCHHHHHHHHhCcccc
Confidence 6899999999999999999876543
No 300
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.55 E-value=0.0001 Score=39.93 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=21.0
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhc
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.....|++.|.+|+||||+...++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999988863
No 301
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.55 E-value=7.3e-05 Score=41.54 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=21.6
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.-.-+.+.|.+|+||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467899999999999999998864
No 302
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.54 E-value=5.4e-05 Score=45.12 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=20.9
Q ss_pred eEEEEECCCCChHHHHHHHHhcCc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
-.++++|++|+||||++..+++..
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Confidence 468899999999999999988643
No 303
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.54 E-value=6.6e-05 Score=46.53 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=24.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCCccce
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTI 45 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~t~ 45 (68)
.++++|++|+||||+++.+++.-.+.....++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giiti 293 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSI 293 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence 48999999999999999998755444443343
No 304
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.54 E-value=4.5e-05 Score=51.51 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=23.6
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhcC
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
....++|+++|..++|||||++++.+.
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 345689999999999999999999863
No 305
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.54 E-value=9.1e-05 Score=40.30 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.4
Q ss_pred eeEEEEECCCCChHHHHHHHHhcC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
...+.++|.+|+||||+++.+.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999864
No 306
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.54 E-value=0.00011 Score=45.76 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=24.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCCcc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKS 43 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~ 43 (68)
.+.++|++|+|||||++.+++...+..+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i 343 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKI 343 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 578999999999999999998765554443
No 307
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.53 E-value=5.6e-05 Score=44.95 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.++++|++|+||||+++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999988764
No 308
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.53 E-value=3.2e-05 Score=40.66 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.++++|++|+|||+|++.+++.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998864
No 309
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.53 E-value=7.9e-05 Score=39.75 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.6
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|+++|.+|+||||+...++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998874
No 310
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.53 E-value=0.00011 Score=46.40 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=24.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCCcc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKS 43 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~~~ 43 (68)
.+.++|++|+|||||++.+++...+..+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 413 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 578999999999999999998765555443
No 311
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.53 E-value=7.9e-05 Score=39.69 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|.+|+||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998764
No 312
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.53 E-value=6.3e-05 Score=42.77 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-++++|++|+|||+|++.+++.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999998863
No 313
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.53 E-value=6.2e-05 Score=42.47 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHh
Q 035301 13 FKVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~ 33 (68)
..+.++|++|+||||+++.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999988
No 314
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.53 E-value=9.1e-05 Score=45.16 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.0
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
...++++++|..++|||||++++++.
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34689999999999999999999864
No 315
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.53 E-value=7e-05 Score=45.32 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.6
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
..++++++|..++|||||+++++..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999864
No 316
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.53 E-value=6e-05 Score=44.05 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.+++.|++|+|||+|++.+++.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999998864
No 317
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.52 E-value=3.6e-05 Score=48.27 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLE 40 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~ 40 (68)
.+.++|++|+|||||++.+++...+.+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~p~~ 409 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYDVDR 409 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSCCSE
T ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCC
Confidence 789999999999999999998654443
No 318
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.52 E-value=3e-05 Score=48.39 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+.+...+.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~p~ 394 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYDVT 394 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCS
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCC
Confidence 78899999999999999988765443
No 319
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.52 E-value=8.6e-05 Score=44.45 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.9
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhc
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
....++++++|..++|||||++++.+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHh
Confidence 34568999999999999999999986
No 320
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.52 E-value=6.1e-05 Score=44.63 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
++.++|++|+|||||++.+++...
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 789999999999999999998653
No 321
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.51 E-value=5.6e-05 Score=43.85 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.2
Q ss_pred eeEEEEECCCCChHHHHHHHHhcC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
...+.++|++|+|||||++.+.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998864
No 322
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.51 E-value=6.3e-05 Score=46.68 Aligned_cols=24 Identities=29% Similarity=0.711 Sum_probs=20.8
Q ss_pred eEEEEECCCCChHHHHHHHHhcCc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
-.++++|.+|+||||++..+++..
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHh
Confidence 368899999999999999988643
No 323
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.51 E-value=0.0001 Score=42.69 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.3
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhc
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.....|.+.|++|+|||||++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988764
No 324
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.50 E-value=7e-05 Score=43.65 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.0
Q ss_pred eEEEEECCCCChHHHHHHHHhcCc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
--++++|.+|+||||+++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 457899999999999999999764
No 325
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.49 E-value=4.7e-05 Score=47.68 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
.+.++|++|+|||||++.+.+...+.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~~ 396 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDPE 396 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCC
Confidence 78999999999999999998765443
No 326
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.48 E-value=0.00012 Score=45.58 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=24.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESK 42 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~~ 42 (68)
.+.++|++|+|||||++.+++...+.++.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 324 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITADEGS 324 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 47899999999999999999876555443
No 327
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.48 E-value=0.0001 Score=39.26 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.0
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...|++.|.+|+|||++...+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999998873
No 328
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.48 E-value=0.00011 Score=39.12 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.7
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..++++|.+|+||||+...++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998873
No 329
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.46 E-value=7.6e-05 Score=45.45 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=21.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
++.++|++|+|||||++.+++...
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 789999999999999999997653
No 330
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.46 E-value=7.6e-05 Score=44.48 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.++++|++|+||||+++.+++.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998864
No 331
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.46 E-value=0.00011 Score=43.88 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=22.0
Q ss_pred eeEEEEECCCCChHHHHHHHHhcC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.++++++|..++|||||++++.+.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 589999999999999999999863
No 332
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.46 E-value=7.5e-05 Score=47.11 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=17.9
Q ss_pred eeeEEEEECCCCChHHHHHHHHhc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+++++|..++|||||+.+++.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~ 26 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQ 26 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999985
No 333
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.45 E-value=7.6e-05 Score=42.71 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
-++++|++|+|||+|+..+++...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999886543
No 334
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.44 E-value=0.00012 Score=41.02 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.2
Q ss_pred eeeEEEEECCCCChHHHHHHHHhc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..+.|++.|.+|+||||+..+++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998874
No 335
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.44 E-value=0.00019 Score=43.83 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.3
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhc
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...++++++|..++|||||++++..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 4568999999999999999999864
No 336
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.44 E-value=9.7e-05 Score=40.75 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-+.++|++|+|||+|+..++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999873
No 337
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.44 E-value=9.7e-05 Score=46.53 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.7
Q ss_pred eeEEEEECCCCChHHHHHHHHhcCcCc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRNEFC 38 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~~~~ 38 (68)
.++++++|..++|||||++++.+..+.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~ 31 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA 31 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc
Confidence 579999999999999999999876543
No 338
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.44 E-value=6.3e-05 Score=39.64 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=19.2
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..+++.|++|+|||+++..++.
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999988875
No 339
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.44 E-value=9.1e-05 Score=39.59 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.6
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|.+|+||||+...+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
No 340
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.44 E-value=0.00014 Score=43.23 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.-|++.|++|+|||+|...++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988874
No 341
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.44 E-value=0.00014 Score=39.39 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.8
Q ss_pred eeeEEEEECCCCChHHHHHHHHhc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
....|++.|.+|+||||+.+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998874
No 342
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.44 E-value=8.7e-05 Score=40.43 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.2
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+.++|.+|+||||+++.+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998764
No 343
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.43 E-value=9.9e-05 Score=40.39 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.6
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-.+++.|++|+|||+++..++.
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 344
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.43 E-value=0.00012 Score=46.15 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.5
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcCc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
....|+++|.+++|||+|++++.+..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 45789999999999999999999865
No 345
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.43 E-value=0.0001 Score=41.33 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.7
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..+++.|++|+|||++++.+++
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999999998875
No 346
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.42 E-value=0.00014 Score=40.93 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.1
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhc
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+.|.+.|.+|+||||+...+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 347
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.41 E-value=0.00012 Score=40.46 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=19.6
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
+.|+++|++|+||+|...+++.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998885
No 348
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.41 E-value=0.00011 Score=41.56 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-++++|++|+||||+...++.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 349
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.41 E-value=0.00014 Score=39.25 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.9
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|.+|+||||+...+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 350
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.41 E-value=0.00011 Score=39.95 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-++++|++|+|||+|+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 351
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.41 E-value=0.00011 Score=40.21 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
+|++.|.+|+||||+...++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
No 352
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.41 E-value=0.00014 Score=40.38 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCChHHHHHHHHhc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
....|+++|..|+||||+...++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998874
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.39 E-value=0.00015 Score=39.87 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.2
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...|+++|.+|+||||+...++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 354
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.39 E-value=0.00015 Score=42.79 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred eeeEEEEECCCCChHHHHHHHHhc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..+.++++|..|+|||||+++++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 355
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.39 E-value=0.00015 Score=43.25 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.0
Q ss_pred ceeeEEEEECCCCChHHHHHHHHh
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~ 33 (68)
....|++++|.+++||||+++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 447899999999999999998863
No 356
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.38 E-value=0.00013 Score=39.45 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..+++.|++|+|||+|+..++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999988775
No 357
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.38 E-value=0.00013 Score=40.26 Aligned_cols=23 Identities=39% Similarity=0.731 Sum_probs=20.4
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...|++.|.+|+||||+.+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998874
No 358
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00018 Score=45.49 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.0
Q ss_pred EEEECCCCChHHHHHHHHhcCcCcCCC
Q 035301 15 VVLIGDSGVGKSNLLSRFTRNEFCLES 41 (68)
Q Consensus 15 i~~iG~~~vGKtsl~~~~~~~~~~~~~ 41 (68)
+.++|++|+|||||++.+++...+.++
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 689999999999999999987655444
No 359
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.37 E-value=0.00015 Score=41.77 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.4
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..-+++.|++|+||||+...+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999874
No 360
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.37 E-value=0.00016 Score=37.93 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 361
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.37 E-value=0.00016 Score=38.87 Aligned_cols=23 Identities=17% Similarity=0.533 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
..|+++|.+|+||||+.+.+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999988754
No 362
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.37 E-value=0.00012 Score=44.41 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
-++++|++|+||||+++.+++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999988644
No 363
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.36 E-value=0.00016 Score=38.98 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=20.7
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
..|++.|..|+||||+...+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 364
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.36 E-value=0.00014 Score=39.52 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-+++.|++|+|||+++..++.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998874
No 365
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.35 E-value=0.00012 Score=40.31 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.7
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|+++|.+|+||||+...++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 366
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.35 E-value=0.00017 Score=38.82 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.3
Q ss_pred eeEEEEECCCCChHHHHHHHHhcC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
...|.+.|.+|+||||+...+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999998864
No 367
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.34 E-value=0.00018 Score=38.84 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.8
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..-+.++|.+|+||||++.+++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999998875
No 368
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.34 E-value=0.00015 Score=38.92 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.+++.|++|+|||+++..++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999988875
No 369
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.34 E-value=0.00018 Score=38.58 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.|++.|..|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 370
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.34 E-value=0.00022 Score=38.00 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.3
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|.+|+||||+...++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999988764
No 371
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.33 E-value=0.00027 Score=37.84 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.1
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...++++|.+|+||||+...++.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999998764
No 372
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.32 E-value=0.0002 Score=39.64 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.|++.|.+|+||||+...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 373
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.31 E-value=4.8e-05 Score=41.36 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.|++.|.+|+||||++..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998874
No 374
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.30 E-value=0.00021 Score=37.53 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=17.1
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 035301 14 KVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~ 33 (68)
-.+++|++|+|||+++..+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35788999999999998865
No 375
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.29 E-value=0.00034 Score=41.58 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.8
Q ss_pred CceeeEEEEECCCCChHHHHHHHHh
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~ 33 (68)
.....|++++|.+++||||+++++.
T Consensus 6 ~~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 6 GIHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceeEEEECCCCCcHHHHHHHHH
Confidence 4567899999999999999998865
No 376
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.29 E-value=0.00022 Score=45.58 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=23.4
Q ss_pred CceeeEEEEECCCCChHHHHHHHHhc
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.+...+++++|..++|||||+++++.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999984
No 377
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.29 E-value=0.0002 Score=44.57 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=22.8
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhc
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
....+++++|..++|||||+++++.
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHHHHHh
Confidence 4578999999999999999999985
No 378
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.28 E-value=0.00017 Score=41.01 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.6
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-.++++|.+|+||||+.+.+++
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998875
No 379
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.28 E-value=0.00021 Score=38.06 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..++++|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998875
No 380
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.28 E-value=0.00029 Score=38.54 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=22.4
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhcC
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.-...+.|.+.|..|+||||+.+.+...
T Consensus 8 ~~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 8 HHHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHHh
Confidence 3445688999999999999999988753
No 381
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.28 E-value=0.00012 Score=48.45 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLE 40 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~ 40 (68)
.+.++|++|+|||||++.+++...+.+
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll~P~s 727 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGELLPTS 727 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 689999999999999999998655443
No 382
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.27 E-value=0.00022 Score=44.34 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.8
Q ss_pred ceeeEEEEECCCCChHHHHHHHHh
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~ 33 (68)
....+++++|..++|||||+++++
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHH
T ss_pred hcCCEEEEECCCCCcHHHHHHHHH
Confidence 456899999999999999999996
No 383
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.27 E-value=0.0003 Score=38.09 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=19.9
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|..|+||||+.+.+..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 384
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.26 E-value=0.00019 Score=40.59 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.8
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-.+++.|++|+|||++++.++.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999999875
No 385
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.26 E-value=0.00023 Score=37.92 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.|++.|..|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 386
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.26 E-value=0.00021 Score=42.47 Aligned_cols=19 Identities=37% Similarity=0.649 Sum_probs=17.0
Q ss_pred EEEECCCCChHHHHHHHHh
Q 035301 15 VVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 15 i~~iG~~~vGKtsl~~~~~ 33 (68)
.+++|++|+|||||+..++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876
No 387
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.26 E-value=0.00021 Score=38.32 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|.+|+||||+...++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988874
No 388
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.26 E-value=0.00019 Score=40.86 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.--+++.|++|+|||++++.++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34789999999999999999875
No 389
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.26 E-value=0.00022 Score=39.79 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.-+++.|++|+|||++++.++.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998875
No 390
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.26 E-value=0.00023 Score=38.09 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.6
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|.+|+||||+...++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 391
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.25 E-value=0.00017 Score=43.01 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 035301 14 KVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~ 33 (68)
+++++|..++|||||++++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999998
No 392
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.25 E-value=0.00025 Score=39.45 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhc
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
++.....+.++|.+|+||||+...++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445567899999999999999988774
No 393
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.25 E-value=0.00024 Score=37.38 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=19.4
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|.+|+||||+...+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
No 394
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.25 E-value=0.00031 Score=37.37 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.6
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|.+|+||||+...+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 395
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.25 E-value=0.00049 Score=38.43 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHh
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~ 33 (68)
.......+++.|..||||||++..++
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHH
Confidence 34557889999999999999999998
No 396
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.25 E-value=0.00019 Score=42.69 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.1
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.+++++|.+++|||||++.+.+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 47999999999999999999875
No 397
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.24 E-value=0.00018 Score=41.80 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.1
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
--+++.|++|+|||+|++.++..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988753
No 398
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.24 E-value=0.00019 Score=40.85 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-++++|++|+|||+|+..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998875
No 399
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.23 E-value=0.00022 Score=41.26 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-+++.|++|+|||++++.++..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999988753
No 400
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=0.00017 Score=41.92 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=18.8
Q ss_pred EEEECCCCChHHHHHHHHhc
Q 035301 15 VVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 15 i~~iG~~~vGKtsl~~~~~~ 34 (68)
+++.|++|+|||++++.+++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 401
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.22 E-value=0.00023 Score=39.13 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.2
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...|+++|..|+||||+...++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 402
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.22 E-value=0.00033 Score=38.33 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.1
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
+.|++.|.+|+||||+.+.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 403
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.21 E-value=0.00018 Score=40.51 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.8
Q ss_pred eeeEEEEECCCCChHHHHHHHHhc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
....++++|.+|+||||+...+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998875
No 404
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.20 E-value=0.00048 Score=35.68 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.7
Q ss_pred eEEEEECCCCChHHHHHHHHhcCc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
..+++.|++|+|||++.+.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999987643
No 405
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.19 E-value=0.00028 Score=38.28 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.9
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|..|+||||+.+.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 406
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.19 E-value=0.00028 Score=38.61 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.3
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..++++|.+|+||||+...+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998764
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.19 E-value=0.00036 Score=40.02 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.5
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhc
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+.|++.|.+|+||||+.+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998873
No 408
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.19 E-value=0.00026 Score=41.35 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.+++.|++|+|||++++.++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998854
No 409
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.18 E-value=0.00014 Score=49.15 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=24.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCCCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESK 42 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~~~ 42 (68)
++.++|++|+|||||+..+.+-..+.++.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1135 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFYDTLGGE 1135 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSSCCSSSE
T ss_pred EEEEECCCCChHHHHHHHHhcCccCCCCE
Confidence 88999999999999999998765554443
No 410
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.18 E-value=0.00026 Score=39.02 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=17.9
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-++++|++|+|||+|+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999887753
No 411
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.18 E-value=0.00038 Score=39.36 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.7
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|.+|+||||+...+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 412
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.18 E-value=0.00028 Score=45.79 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=25.2
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhcCcC
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
....+|+++|+.++||||+++.+.+..+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 3467999999999999999999999876
No 413
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.17 E-value=0.00036 Score=42.57 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.8
Q ss_pred eeeEEEEECCCCChHHHHHHHHhcC
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
...+|+++|.+|+||||+.++++..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998754
No 414
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.17 E-value=0.00044 Score=38.59 Aligned_cols=20 Identities=20% Similarity=0.576 Sum_probs=17.6
Q ss_pred EEEECCCCChHHHHHHHHhc
Q 035301 15 VVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 15 i~~iG~~~vGKtsl~~~~~~ 34 (68)
|+++|++|+||+|...+++.
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999998875
No 415
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.17 E-value=0.0003 Score=41.71 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=19.7
Q ss_pred ceeeEEEEECCCCChHHHHHHHH
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRF 32 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~ 32 (68)
...+|++++|..++||||++++.
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQm 25 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQL 25 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHHH
T ss_pred CCcceEEEECCCCCcHHHHHHHH
Confidence 35689999999999999998764
No 416
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.17 E-value=0.00033 Score=37.29 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.|++.|.+|+||||+...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988864
No 417
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.17 E-value=0.00028 Score=40.68 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
--+++.|++|+|||++++.++.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 3589999999999999999885
No 418
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.16 E-value=0.00022 Score=48.17 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=22.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
++.++|++|+|||||++.+.+...+.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~~~~ 443 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLYDPL 443 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 78999999999999999998755433
No 419
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.16 E-value=0.00037 Score=39.34 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.0
Q ss_pred eeEEEEECCCCChHHHHHHHHh
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~ 33 (68)
.+.+.+.|++|+||||+.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999887
No 420
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.15 E-value=0.00031 Score=41.27 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.6
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+.++|.+|+||||+++.+++
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46889999999999999999874
No 421
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.15 E-value=0.00031 Score=39.21 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.7
Q ss_pred eeEEEEECCCCChHHHHHHHHhcC
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
...|++.|.+|+||||++..+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999998753
No 422
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.15 E-value=0.00045 Score=40.76 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..++++|++|+|||++...++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 423
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.15 E-value=0.00031 Score=39.93 Aligned_cols=22 Identities=32% Similarity=0.761 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..+++.|++|+|||++++.++.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 424
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.15 E-value=0.00021 Score=37.89 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=15.6
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998863
No 425
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.15 E-value=0.00031 Score=40.40 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-+++.|+.|+|||+|+..+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999998753
No 426
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.14 E-value=6.9e-05 Score=42.11 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEECCCCChHHHHHHHHhcCcC
Q 035301 15 VVLIGDSGVGKSNLLSRFTRNEF 37 (68)
Q Consensus 15 i~~iG~~~vGKtsl~~~~~~~~~ 37 (68)
+.++|++|+|||||+..+++-..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 46789999999999999886444
No 427
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.14 E-value=0.00044 Score=40.79 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.4
Q ss_pred CceeeEEEEECCCCChHHHHHHHH
Q 035301 9 YDYLFKVVLIGDSGVGKSNLLSRF 32 (68)
Q Consensus 9 ~~~~~ki~~iG~~~vGKtsl~~~~ 32 (68)
....+|++++|...+||||+++++
T Consensus 4 ~~~~~klLlLG~geSGKSTi~KQm 27 (327)
T 3ohm_A 4 ARRELKLLLLGTGESGKSTFIKQM 27 (327)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHH
T ss_pred hcccceEEEEcCCCccHHHHHHHH
Confidence 345789999999999999999864
No 428
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.14 E-value=0.00027 Score=40.99 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.9
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-.++++|++|+||||++..++..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999988753
No 429
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.0003 Score=40.97 Aligned_cols=21 Identities=24% Similarity=0.605 Sum_probs=18.9
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 035301 15 VVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 15 i~~iG~~~vGKtsl~~~~~~~ 35 (68)
+++.|++|+|||+++..+++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988753
No 430
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.13 E-value=0.00028 Score=40.30 Aligned_cols=23 Identities=17% Similarity=0.484 Sum_probs=19.4
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+++.|++|+|||+++..++.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999986653
No 431
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.13 E-value=0.00022 Score=42.44 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.1
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.+++++|.+++|||||++.+.+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhh
Confidence 47999999999999999999875
No 432
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.13 E-value=0.00033 Score=40.00 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.1
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
--+++.|++|+|||++++.++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36899999999999999988754
No 433
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.13 E-value=0.00033 Score=39.55 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.4
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+++.|++|+|||+++..++.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999998875
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.12 E-value=0.00033 Score=42.03 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.++++|++|+|||||++.+++
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 688999999999999998875
No 435
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.11 E-value=0.00026 Score=47.93 Aligned_cols=27 Identities=41% Similarity=0.577 Sum_probs=22.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcCC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCLE 40 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~~ 40 (68)
++.++|++|+|||||++.+.+...+.+
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~~ 472 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVLK 472 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCSE
T ss_pred EEEEEecCCCcHHHHHHHhcccccccc
Confidence 789999999999999999997554433
No 436
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.11 E-value=0.00038 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
.+.++|++|+|||||++.++++.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999654
No 437
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.11 E-value=0.0003 Score=40.50 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-+++.|+.|+|||+|+..+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 438
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.10 E-value=0.00036 Score=40.71 Aligned_cols=23 Identities=22% Similarity=0.587 Sum_probs=19.9
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
--++++|++|+||||++..++..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHH
Confidence 46889999999999999988853
No 439
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.09 E-value=0.00033 Score=40.33 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=19.1
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..-+++.|++|+|||++++.++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34567779999999999998874
No 440
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.08 E-value=0.00058 Score=43.75 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=23.7
Q ss_pred CCceeeEEEEECCCCChHHHHHHHHhc
Q 035301 8 EYDYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 8 ~~~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..+...+++++|..++|||||+.+++.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999999974
No 441
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.08 E-value=0.00043 Score=39.53 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.7
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999885
No 442
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.07 E-value=0.00033 Score=43.24 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=17.4
Q ss_pred EEEEECCCCChHHHHHHHH
Q 035301 14 KVVLIGDSGVGKSNLLSRF 32 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~ 32 (68)
-++++|++|+|||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5789999999999999995
No 443
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.06 E-value=0.00034 Score=41.35 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-+.++|++|+|||+|+..++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 444
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.05 E-value=0.00036 Score=47.18 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNEFCL 39 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~~~~ 39 (68)
++.++|++|+|||||++.+.+...+.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~~p~ 1086 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFYDPM 1086 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 78999999999999999999765443
No 445
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.04 E-value=0.00051 Score=37.65 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=16.9
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 035301 14 KVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~ 33 (68)
-.+++|++|+|||+++..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45788999999999998764
No 446
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.04 E-value=0.00058 Score=40.56 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.6
Q ss_pred ceeeEEEEECCCCChHHHHHHHHh
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~ 33 (68)
...+|++++|...+||||+++++.
T Consensus 30 ~~~~klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 30 AREVKLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEEcCCCCCchhHHHHHH
Confidence 457899999999999999988754
No 447
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.04 E-value=0.00035 Score=40.71 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.0
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.-.+++.|++|+|||+++..++.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998875
No 448
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.04 E-value=0.00027 Score=44.21 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
..++++|.+|+|||||++.+++.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 57899999999999999998764
No 449
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.03 E-value=0.00046 Score=39.95 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=18.8
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 035301 15 VVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 15 i~~iG~~~vGKtsl~~~~~~~ 35 (68)
+++.|++|+|||++++.++..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999888753
No 450
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.02 E-value=0.00047 Score=39.94 Aligned_cols=22 Identities=23% Similarity=0.461 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..+++.|++|+|||+++..++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999999999874
No 451
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.02 E-value=0.00043 Score=43.05 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-++++|++|+|||++++.+++
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 452
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.01 E-value=0.00058 Score=35.89 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=19.7
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.-.|++.|..|+||||+...+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 453
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.99 E-value=0.00043 Score=40.40 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-+++.|++|+|||+++..++.
T Consensus 72 ~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 454
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.99 E-value=0.00059 Score=40.53 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-|+++|+.|+|||+|...++..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
No 455
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.98 E-value=0.00055 Score=38.13 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.3
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
..++++|++|+|||+|...++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999854
No 456
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.98 E-value=0.00058 Score=40.33 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-++++|++|+|||+|...++..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4788999999999999999853
No 457
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.97 E-value=0.00062 Score=38.27 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.7
Q ss_pred eEEEEECCCCChHHHHHHHHhcCc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
.-+++.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 468999999999999999988643
No 458
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.96 E-value=0.00057 Score=39.72 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..+++.|++|+|||+|+..++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988775
No 459
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.96 E-value=0.0006 Score=41.10 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.0
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..-|+++|.+|+||||+.++++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688899999999999999875
No 460
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.96 E-value=0.00058 Score=40.28 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.1
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+++.|++|+|||+++..++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998875
No 461
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.95 E-value=0.00056 Score=39.88 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
--+++.|++|+|||++++.++..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999998853
No 462
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.95 E-value=0.00051 Score=41.94 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=19.6
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-.++++|++|+|||+++..++..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 36799999999999999987753
No 463
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.95 E-value=0.00055 Score=41.55 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-+++.|++|+|||+|++.+.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 464
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.95 E-value=0.00057 Score=39.67 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.2
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+++.|++|+|||++++.++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34699999999999999998875
No 465
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.94 E-value=0.00058 Score=41.15 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-.+++|++|+|||+|+..+..
T Consensus 28 ~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999998875
No 466
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.94 E-value=0.00053 Score=40.09 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.0
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
--+++.|++|+|||+++..++..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988753
No 467
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.93 E-value=0.0002 Score=40.23 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-+++.|++|+|||+++..++.
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999998875
No 468
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.93 E-value=0.00069 Score=36.50 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.+.+.|.+|+||||+.+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988765
No 469
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.92 E-value=0.00056 Score=41.28 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=18.0
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 035301 14 KVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~ 33 (68)
-+.++|++|+|||+|+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 57899999999999999775
No 470
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.91 E-value=0.00072 Score=40.29 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-.+++|++|+|||+++..+..
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 578999999999999998764
No 471
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.91 E-value=0.00017 Score=42.89 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.1
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 035301 14 KVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~ 33 (68)
.++++|++|+|||+|+..+.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998774
No 472
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.90 E-value=0.00096 Score=39.33 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=19.3
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.-++++|++|+|||+|...++.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3578899999999999999875
No 473
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.90 E-value=0.00057 Score=39.56 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
.+++.|++|+|||++++.++.
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999998875
No 474
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.90 E-value=0.0007 Score=39.92 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.3
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+++.|++|+|||++++.++.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 475
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.89 E-value=0.00079 Score=42.60 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=20.5
Q ss_pred ceeeEEEEECCCCChHHHHHHHHhc
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
+...+++++|..++|||||+++++.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~ 28 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLE 28 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999999975
No 476
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.89 E-value=0.00066 Score=42.07 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
-++++|++|+|||+|++.+++.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998853
No 477
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.88 E-value=0.00079 Score=39.48 Aligned_cols=19 Identities=42% Similarity=0.718 Sum_probs=16.4
Q ss_pred EEEECCCCChHHHHHHHHh
Q 035301 15 VVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 15 i~~iG~~~vGKtsl~~~~~ 33 (68)
.+++|++|+|||+++..+.
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4688999999999999763
No 478
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.88 E-value=0.00073 Score=39.72 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.3
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+++.|++|+|||++.+.++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 479
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.87 E-value=0.00063 Score=42.03 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
-++++|++|+|||+|+..+++..
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998643
No 480
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.86 E-value=0.00054 Score=38.66 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.8
Q ss_pred eeeEEEEECCCCChHHHHHHHHhc
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
....|++.|..|+||||+++.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988875
No 481
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.85 E-value=0.00096 Score=40.40 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.0
Q ss_pred ceeeEEEEECCCCChHHHHHHHHh
Q 035301 10 DYLFKVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 10 ~~~~ki~~iG~~~vGKtsl~~~~~ 33 (68)
...+|++++|...+||||+++++.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 457899999999999999998754
No 482
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.85 E-value=0.00053 Score=43.47 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=16.6
Q ss_pred EEEEECCCCChHHHHHHHH
Q 035301 14 KVVLIGDSGVGKSNLLSRF 32 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~ 32 (68)
.+.++|++|+|||||++.+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 5789999999999999643
No 483
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.85 E-value=0.00078 Score=39.75 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
--+++.|++|+|||++++.++.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998875
No 484
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.84 E-value=0.00077 Score=42.31 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRNE 36 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~~ 36 (68)
.++++|++|+|||++++.+++..
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 68999999999999999998754
No 485
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.83 E-value=0.00034 Score=36.23 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.7
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
..+++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 35899999999999999887754
No 486
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.81 E-value=0.00049 Score=40.04 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 035301 14 KVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~ 33 (68)
-.+++|++|+|||+|+..+.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 57899999999999999987
No 487
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.81 E-value=0.00088 Score=41.31 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-+++.|++|+|||++++.+++
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999885
No 488
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.79 E-value=0.00093 Score=39.70 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.4
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...+++.|++|+|||++++.++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 489
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.78 E-value=0.00047 Score=39.57 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.4
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
..+++.|++|+|||+++..+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 490
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.78 E-value=0.00093 Score=40.75 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.1
Q ss_pred eEEEEECCCCChHHHHHHHHhcC
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
..+++.|++|+|||++++.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999998853
No 491
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.77 E-value=0.0011 Score=36.25 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
=+++.|++|+|||++...+...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 5889999999999999988753
No 492
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.75 E-value=0.00095 Score=43.27 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.++++|++|+||||+++.+++.
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhh
Confidence 5889999999999999987753
No 493
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.74 E-value=0.0011 Score=38.58 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-+++.|+.|+|||+++..++.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998874
No 494
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.73 E-value=0.0014 Score=39.24 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=19.5
Q ss_pred eeEEEEECCCCChHHHHHHHHhc
Q 035301 12 LFKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 12 ~~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
...++++|.+|+|||++...++.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999986653
No 495
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.72 E-value=0.001 Score=43.26 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 035301 14 KVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~ 34 (68)
-++++|++|+||||+++.+++
T Consensus 609 i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 588999999999999998765
No 496
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0012 Score=40.27 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.8
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
--+++.|++|+|||++++.+++
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999885
No 497
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.71 E-value=0.00093 Score=42.39 Aligned_cols=16 Identities=63% Similarity=0.713 Sum_probs=14.9
Q ss_pred EEEEECCCCChHHHHH
Q 035301 14 KVVLIGDSGVGKSNLL 29 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~ 29 (68)
.+.++|++|+|||||+
T Consensus 46 ~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHh
Confidence 6899999999999996
No 498
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.71 E-value=0.0012 Score=38.73 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.1
Q ss_pred eEEEEECCCCChHHHHHHHHhc
Q 035301 13 FKVVLIGDSGVGKSNLLSRFTR 34 (68)
Q Consensus 13 ~ki~~iG~~~vGKtsl~~~~~~ 34 (68)
--++++|.+|+||||++..++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688899999999999988775
No 499
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.71 E-value=0.0017 Score=40.40 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.7
Q ss_pred eeeEEEEECCCCChHHHHHHHHh
Q 035301 11 YLFKVVLIGDSGVGKSNLLSRFT 33 (68)
Q Consensus 11 ~~~ki~~iG~~~vGKtsl~~~~~ 33 (68)
....|+++|..||||||++.+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999988
No 500
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.70 E-value=0.0013 Score=37.57 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 035301 14 KVVLIGDSGVGKSNLLSRFTRN 35 (68)
Q Consensus 14 ki~~iG~~~vGKtsl~~~~~~~ 35 (68)
.+++.|++|+|||+++..++..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
Done!