Query 035304
Match_columns 68
No_of_seqs 103 out of 115
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 17:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kv5_A FST, putative uncharact 32.6 21 0.00072 19.1 1.4 11 5-15 10-20 (33)
2 3arc_L Photosystem II reaction 17.8 1.2E+02 0.0042 16.5 2.7 16 48-63 15-30 (37)
3 3lti_A DNA-directed RNA polyme 15.0 72 0.0025 23.5 1.7 8 17-24 4-11 (296)
4 1v54_D Cytochrome C oxidase su 12.6 88 0.003 21.0 1.5 19 2-20 76-94 (147)
5 1cse_I Eglin C; complex(serine 12.5 44 0.0015 19.3 -0.0 8 33-40 2-9 (70)
6 1xd7_A YWNA; structural genomi 11.6 1.4E+02 0.0047 18.3 2.1 18 36-53 2-19 (145)
7 4e0e_A Putative uncharacterize 10.2 1.1E+02 0.0037 21.2 1.3 16 24-40 4-19 (178)
8 2y69_D Cytochrome C oxidase su 9.9 1.2E+02 0.0041 20.8 1.5 18 2-19 98-115 (169)
9 1e6y_B Methyl-coenzyme M reduc 9.0 50 0.0017 26.1 -0.8 29 21-50 108-139 (433)
10 1hbn_B Methyl-coenzyme M reduc 8.3 55 0.0019 25.9 -0.8 29 21-50 111-142 (442)
No 1
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=32.58 E-value=21 Score=19.10 Aligned_cols=11 Identities=18% Similarity=0.123 Sum_probs=8.8
Q ss_pred hHHHHHHHHHH
Q 035304 5 AAPLIAAALFA 15 (68)
Q Consensus 5 gpV~i~vvLFv 15 (68)
||+++|++|=.
T Consensus 10 aPivVGvvl~L 20 (33)
T 2kv5_A 10 APIFVGLVLEM 20 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 79999998743
No 2
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=17.78 E-value=1.2e+02 Score=16.47 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 035304 48 TVLYGLFLILFLVILN 63 (68)
Q Consensus 48 a~ifF~l~~if~~ai~ 63 (68)
|-+|.+++.||.+|+-
T Consensus 15 TSLy~GLLlifvlavl 30 (37)
T 3arc_L 15 TSLYLGLLLILVLALL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4478888888887763
No 3
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=15.01 E-value=72 Score=23.54 Aligned_cols=8 Identities=38% Similarity=0.920 Sum_probs=6.9
Q ss_pred hcCceeEE
Q 035304 17 LSPGLVVQ 24 (68)
Q Consensus 17 LsPGLLfq 24 (68)
+|||.-|+
T Consensus 4 ~SPGv~f~ 11 (296)
T 3lti_A 4 MSPGVFFD 11 (296)
T ss_dssp CCCEEEEE
T ss_pred CCCEEEEe
Confidence 69999997
No 4
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=12.62 E-value=88 Score=20.98 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=13.2
Q ss_pred CCchHHHHHHHHHHHhcCc
Q 035304 2 NDWAAPLIAAALFAFLSPG 20 (68)
Q Consensus 2 ~DWgpV~i~vvLFvlLsPG 20 (68)
.+|.+|+-++.+|+-+|=+
T Consensus 76 gewK~v~g~v~~~i~~s~~ 94 (147)
T 1v54_D 76 NEWKTVVGAAMFFIGFTAL 94 (147)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 4688888777777766533
No 5
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=12.46 E-value=44 Score=19.30 Aligned_cols=8 Identities=25% Similarity=0.185 Sum_probs=1.4
Q ss_pred eeecCcch
Q 035304 33 DFLNMKTS 40 (68)
Q Consensus 33 eFgn~~Ts 40 (68)
|||+.|||
T Consensus 2 ~~~~~k~s 9 (70)
T 1cse_I 2 EFGSELKS 9 (70)
T ss_dssp ------CB
T ss_pred CcCCCCCc
Confidence 78888876
No 6
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=11.55 E-value=1.4e+02 Score=18.30 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=11.6
Q ss_pred cCcchHHHHHHHHHHHHH
Q 035304 36 NMKTSIAAIFVHTVLYGL 53 (68)
Q Consensus 36 n~~Tsg~si~VHa~ifF~ 53 (68)
.|+|+....-+|+++|.+
T Consensus 2 ~M~s~~~~yAl~~L~~La 19 (145)
T 1xd7_A 2 SLINSRLAVAIHILSLIS 19 (145)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 467778888899988865
No 7
>4e0e_A Putative uncharacterized protein; DUF4450 family, structural genomics, joint center for struct genomics, JCSG; 2.90A {Bacteroides thetaiotaomicron}
Probab=10.21 E-value=1.1e+02 Score=21.17 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=12.8
Q ss_pred EecCCCCeeeeecCcch
Q 035304 24 QMPAKNRAVDFLNMKTS 40 (68)
Q Consensus 24 q~PG~~r~veFgn~~Ts 40 (68)
|+||.++.+.|| .+++
T Consensus 4 ~~p~~~Gnirfg-i~~g 19 (178)
T 4e0e_A 4 QLTPPAGTFRLG-ISKG 19 (178)
T ss_dssp CCCCSSSEEEEE-EEET
T ss_pred cCCCCCceEEEE-EEcC
Confidence 789999999998 4443
No 8
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.93 E-value=1.2e+02 Score=20.80 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=12.8
Q ss_pred CCchHHHHHHHHHHHhcC
Q 035304 2 NDWAAPLIAAALFAFLSP 19 (68)
Q Consensus 2 ~DWgpV~i~vvLFvlLsP 19 (68)
.+|.+|+-++.+|+-+|=
T Consensus 98 gEWK~V~ggv~~~i~~s~ 115 (169)
T 2y69_D 98 NEWKTVVGAAMFFIGFTA 115 (169)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 478888877777776553
No 9
>1e6y_B Methyl-coenzyme M reductase I beta subunit; biological methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP: a.89.1.1 d.58.31.2
Probab=8.99 E-value=50 Score=26.10 Aligned_cols=29 Identities=34% Similarity=0.541 Sum_probs=23.2
Q ss_pred eeEEecCCCCe---eeeecCcchHHHHHHHHHH
Q 035304 21 LVVQMPAKNRA---VDFLNMKTSIAAIFVHTVL 50 (68)
Q Consensus 21 LLfq~PG~~r~---veFgn~~Tsg~si~VHa~i 50 (68)
+|.|+|-+ |. -||..--|+..+.++|++|
T Consensus 108 llvqvPs~-R~~~aa~y~~~~~~~a~A~~~aIi 139 (433)
T 1e6y_B 108 LLIQSPKS-RIIAGADFMSATTVGAAAVTQTIM 139 (433)
T ss_dssp EEEECCHH-HHHTSSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HhhhhhhhhHHHHHHHHHHHHHHH
Confidence 78899954 43 6777778889999999986
No 10
>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} SCOP: a.89.1.1 d.58.31.2 PDB: 1hbm_B* 1hbo_B* 1hbu_B* 1mro_B* 3m1v_B* 3m2r_B* 3m2u_B* 3m2v_B* 3m30_B* 3m32_B* 3pot_B* 1e6v_B*
Probab=8.34 E-value=55 Score=25.92 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=23.1
Q ss_pred eeEEecCCCCe---eeeecCcchHHHHHHHHHH
Q 035304 21 LVVQMPAKNRA---VDFLNMKTSIAAIFVHTVL 50 (68)
Q Consensus 21 LLfq~PG~~r~---veFgn~~Tsg~si~VHa~i 50 (68)
+|.|+|-+ |. -||----|+..+.++|++|
T Consensus 111 llvqvPs~-R~~~aa~y~~~~~~~a~A~~~aii 142 (442)
T 1hbn_B 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (442)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HhhhhcchhHHHHHHHHHHHHHHH
Confidence 78899954 43 6777778889999999987
Done!