Query 035304
Match_columns 68
No_of_seqs 103 out of 115
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 17:51:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035304.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035304hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 31.7 21 0.0015 18.2 2.7 17 47-63 14-30 (37)
2 d1hbnb2 d.58.31.2 (B:2-188) Be 20.9 7.6 0.00056 26.0 -0.5 29 21-50 111-142 (187)
3 d1e32a3 d.31.1.1 (A:107-200) M 19.4 19 0.0014 21.2 1.1 23 17-39 40-62 (94)
4 d1x4ka2 g.39.1.3 (A:8-34) Four 17.6 25 0.0019 16.8 1.2 10 25-35 9-18 (27)
5 d1uf3a_ d.159.1.6 (A:) Hypothe 16.8 33 0.0024 19.1 1.8 15 22-38 214-228 (228)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 15.5 61 0.0045 15.6 2.4 15 48-62 7-21 (30)
7 d1tmka_ c.37.1.1 (A:) Thymidyl 13.6 62 0.0045 19.3 2.6 23 27-49 1-23 (214)
8 d1jb0m_ f.23.19.1 (M:) Subunit 12.4 22 0.0016 17.5 0.1 12 11-22 10-21 (31)
9 d1rqpa1 b.141.1.1 (A:193-298) 9.2 17 0.0012 20.8 -1.3 13 30-42 15-29 (106)
10 d1kr7a_ a.1.1.4 (A:) Nerve tis 8.9 46 0.0033 18.3 0.6 15 1-17 1-15 (110)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=31.70 E-value=21 Score=18.21 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 035304 47 HTVLYGLFLILFLVILN 63 (68)
Q Consensus 47 Ha~ifF~l~~if~~ai~ 63 (68)
+|-+|.+++.||.+++-
T Consensus 14 rtsLy~GlLlifvl~vL 30 (37)
T d2axtl1 14 RTSLYLGLLLILVLALL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45688888888888764
No 2
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.86 E-value=7.6 Score=25.99 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=23.8
Q ss_pred eeEEecCCCC---eeeeecCcchHHHHHHHHHH
Q 035304 21 LVVQMPAKNR---AVDFLNMKTSIAAIFVHTVL 50 (68)
Q Consensus 21 LLfq~PG~~r---~veFgn~~Tsg~si~VHa~i 50 (68)
+|.|+|-+ | --||..--|+..+.++|++|
T Consensus 111 llvqvPs~-Ri~~aa~Y~v~~t~~~~A~~~aIi 142 (187)
T d1hbnb2 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (187)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HHhhhhhhhHHHHHHHHHHHHHHH
Confidence 78999955 4 56788888999999999987
No 3
>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2, P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.43 E-value=19 Score=21.22 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.3
Q ss_pred hcCceeEEecCCCCeeeeecCcc
Q 035304 17 LSPGLVVQMPAKNRAVDFLNMKT 39 (68)
Q Consensus 17 LsPGLLfq~PG~~r~veFgn~~T 39 (68)
++.|=.|.+-|..|.|||-=++|
T Consensus 40 v~~gD~f~v~g~~r~VEFKVv~~ 62 (94)
T d1e32a3 40 IRKGDIFLVRGGMRAVEFKVVET 62 (94)
T ss_dssp EETTCEEEEEETTEEEEEEEEEE
T ss_pred ccCCCEEEEccCCeeEEEEEEee
Confidence 46788999999999999976655
No 4
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.58 E-value=25 Score=16.82 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=7.2
Q ss_pred ecCCCCeeeee
Q 035304 25 MPAKNRAVDFL 35 (68)
Q Consensus 25 ~PG~~r~veFg 35 (68)
+||. |..||-
T Consensus 9 MPGs-rKme~k 18 (27)
T d1x4ka2 9 MPGT-RKMEYK 18 (27)
T ss_dssp CSSS-CEEEET
T ss_pred cCCc-eeeccc
Confidence 6887 578874
No 5
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=16.76 E-value=33 Score=19.11 Aligned_cols=15 Identities=13% Similarity=0.381 Sum_probs=10.8
Q ss_pred eEEecCCCCeeeeecCc
Q 035304 22 VVQMPAKNRAVDFLNMK 38 (68)
Q Consensus 22 Lfq~PG~~r~veFgn~~ 38 (68)
+.++.++ .+||||.+
T Consensus 214 ~i~~~~~--~ie~~~~~ 228 (228)
T d1uf3a_ 214 LLDLRAR--KLETGNVR 228 (228)
T ss_dssp EEETTTT--EEEEEECC
T ss_pred EEEccCC--EEEEEeeC
Confidence 5666665 79999864
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.48 E-value=61 Score=15.59 Aligned_cols=15 Identities=13% Similarity=0.558 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 035304 48 TVLYGLFLILFLVIL 62 (68)
Q Consensus 48 a~ifF~l~~if~~ai 62 (68)
.+||-+++.+|..|+
T Consensus 7 v~ifac~i~lfffai 21 (30)
T d2axtt1 7 VFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777777765
No 7
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.57 E-value=62 Score=19.32 Aligned_cols=23 Identities=0% Similarity=0.036 Sum_probs=18.7
Q ss_pred CCCCeeeeecCcchHHHHHHHHH
Q 035304 27 AKNRAVDFLNMKTSIAAIFVHTV 49 (68)
Q Consensus 27 G~~r~veFgn~~Tsg~si~VHa~ 49 (68)
||++.+-|-+..-||+|-.++.+
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L 23 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNIL 23 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEECCCCCcHHHHHHHH
Confidence 78888888888888888877754
No 8
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=12.36 E-value=22 Score=17.50 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=8.2
Q ss_pred HHHHHHhcCcee
Q 035304 11 AALFAFLSPGLV 22 (68)
Q Consensus 11 vvLFvlLsPGLL 22 (68)
++|-+.|.||.|
T Consensus 10 valvial~pg~l 21 (31)
T d1jb0m_ 10 VALVIALLPAVL 21 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677888865
No 9
>d1rqpa1 b.141.1.1 (A:193-298) 5'-fluoro-5'-deoxyadenosine synthase {Streptomyces cattleya [TaxId: 29303]}
Probab=9.16 E-value=17 Score=20.78 Aligned_cols=13 Identities=46% Similarity=0.542 Sum_probs=9.6
Q ss_pred Ceee--eecCcchHH
Q 035304 30 RAVD--FLNMKTSIA 42 (68)
Q Consensus 30 r~ve--Fgn~~Tsg~ 42 (68)
..+| |||..||..
T Consensus 15 ~~iDh~FGN~iTNI~ 29 (106)
T d1rqpa1 15 SAIDHPFGNVWTNIH 29 (106)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEEecCCCcEEEecC
Confidence 3566 999999853
No 10
>d1kr7a_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon-worm (Cerebratulus lacteus) [TaxId: 6221]}
Probab=8.87 E-value=46 Score=18.35 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=10.0
Q ss_pred CCCchHHHHHHHHHHHh
Q 035304 1 MNDWAAPLIAAALFAFL 17 (68)
Q Consensus 1 M~DWgpV~i~vvLFvlL 17 (68)
|.+|++|.-- +|.-|
T Consensus 1 ~~swa~v~~~--ff~~L 15 (110)
T d1kr7a_ 1 MVNWAAVVDD--FYQEL 15 (110)
T ss_dssp CCCHHHHHHH--HHHHH
T ss_pred CCCHHHHHHH--HHHHH
Confidence 7889988653 55544
Done!