BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035308
MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV
SVERRTDS

High Scoring Gene Products

Symbol, full name Information P value
AT5G41760 protein from Arabidopsis thaliana 3.0e-21

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035308
        (68 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2152955 - symbol:AT5G41760 species:3702 "Arabi...   249  3.0e-21   1


>TAIR|locus:2152955 [details] [associations]
            symbol:AT5G41760 species:3702 "Arabidopsis thaliana"
            [GO:0000139 "Golgi membrane" evidence=IEA] [GO:0005338
            "nucleotide-sugar transmembrane transporter activity"
            evidence=IEA;ISS] [GO:0005351 "sugar:hydrogen symporter activity"
            evidence=IEA] [GO:0005456 "CMP-N-acetylneuraminate transmembrane
            transporter activity" evidence=ISS] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0015780 "nucleotide-sugar transport"
            evidence=ISS] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0055085 "transmembrane transport" evidence=ISS;IDA] [GO:0015136
            "sialic acid transmembrane transporter activity" evidence=IDA]
            [GO:0015739 "sialic acid transport" evidence=IDA] [GO:0000394 "RNA
            splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
            [GO:0009086 "methionine biosynthetic process" evidence=RCA]
            InterPro:IPR004689 InterPro:IPR007271 Pfam:PF04142 GO:GO:0016021
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000139
            eggNOG:COG0697 GO:GO:0005338 EMBL:AB016871 EMBL:BT004304
            EMBL:BT005532 EMBL:AY084311 IPI:IPI00525249 RefSeq:NP_001031992.1
            RefSeq:NP_568596.1 UniGene:At.30210 EnsemblPlants:AT5G41760.1
            EnsemblPlants:AT5G41760.2 GeneID:834180 KEGG:ath:AT5G41760
            TAIR:At5g41760 HOGENOM:HOG000005861 InParanoid:Q8LGE9 KO:K15272
            OMA:WYFVAVL PhylomeDB:Q8LGE9 ProtClustDB:CLSN2689907
            Genevestigator:Q8LGE9 GO:GO:0015136 GO:GO:0005351 GO:GO:0015780
            GO:GO:0015739 InterPro:IPR021189 PANTHER:PTHR10231
            PIRSF:PIRSF005799 TIGRFAMs:TIGR00803 Uniprot:Q8LGE9
        Length = 340

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 48/68 (70%), Positives = 58/68 (85%)

Query:     1 MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 60
             MAMLLTMV S+YLF+FKPTLQLFLGI+IC+MSLHMYFAPP  LVD+P T +A   +L++V
Sbjct:   273 MAMLLTMVASIYLFSFKPTLQLFLGIVICIMSLHMYFAPPHTLVDLPVTNEAHAKTLKQV 332

Query:    61 SVERRTDS 68
              VE +TDS
Sbjct:   333 VVEEKTDS 340


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.139   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       68        68   0.00091  102 3  11 22  0.49    27
                                                     29  0.38    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  412 (44 KB)
  Total size of DFA:  71 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.99u 0.14s 9.13t   Elapsed:  00:00:01
  Total cpu time:  8.99u 0.14s 9.13t   Elapsed:  00:00:01
  Start:  Fri May 10 07:26:47 2013   End:  Fri May 10 07:26:48 2013

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