BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035308
         (68 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LGE9|CSTR1_ARATH CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760
           PE=2 SV=1
          Length = 340

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 58/68 (85%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 60
           MAMLLTMV S+YLF+FKPTLQLFLGI+IC+MSLHMYFAPP  LVD+P T +A   +L++V
Sbjct: 273 MAMLLTMVASIYLFSFKPTLQLFLGIVICIMSLHMYFAPPHTLVDLPVTNEAHAKTLKQV 332

Query: 61  SVERRTDS 68
            VE +TDS
Sbjct: 333 VVEEKTDS 340


>sp|F4JN00|CSTR4_ARATH CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335
           PE=2 SV=1
          Length = 352

 Score = 38.5 bits (88), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFA 38
           +AMLLT V+SV+LFNF  +L  FLG  +  +S++++ A
Sbjct: 311 VAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVYLHSA 348


>sp|Q9C5H6|CSTR3_ARATH CMP-sialic acid transporter 3 OS=Arabidopsis thaliana GN=UTR6 PE=2
           SV=1
          Length = 405

 Score = 30.8 bits (68), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAP 39
           +A + T + S  LF    T+   LGI I  +S+H +F+P
Sbjct: 312 VATIFTGIASAALFGHVITMNFLLGISIVFISMHQFFSP 350


>sp|Q8GY97|CSTR2_ARATH CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240
           PE=2 SV=1
          Length = 406

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAP 39
           +A + T + S  LF    T+   LGI I  +S+H +F+P
Sbjct: 314 VATIFTGIASAALFGHILTMNFLLGISIVFISMHQFFSP 352


>sp|Q6DCG9|S35A5_XENLA Probable UDP-sugar transporter protein SLC35A5 OS=Xenopus laevis
           GN=slc35a5 PE=2 SV=1
          Length = 413

 Score = 29.6 bits (65), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 25/38 (65%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFA 38
           +  ++  ++S ++F+FKP+L  FL   + ++S+ +Y A
Sbjct: 326 ITTVIITIVSYFVFSFKPSLDFFLEAPVVLLSIFIYNA 363


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.330    0.139    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,781,727
Number of Sequences: 539616
Number of extensions: 627677
Number of successful extensions: 1872
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1866
Number of HSP's gapped (non-prelim): 6
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)