Query 035308
Match_columns 68
No_of_seqs 89 out of 91
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 10:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 99.1 3.6E-11 7.9E-16 92.0 3.5 51 1-52 285-335 (345)
2 TIGR00803 nst UDP-galactose tr 97.5 3.7E-05 8.1E-10 52.5 1.2 35 2-36 188-222 (222)
3 PF04142 Nuc_sug_transp: Nucle 97.2 8.3E-05 1.8E-09 53.4 0.3 29 1-29 216-244 (244)
4 PLN00411 nodulin MtN21 family 95.5 0.014 2.9E-07 44.1 3.2 56 4-59 294-349 (358)
5 PF08449 UAA: UAA transporter 95.4 0.011 2.4E-07 42.4 2.3 40 4-43 263-302 (303)
6 PF06027 DUF914: Eukaryotic pr 94.4 0.047 1E-06 41.5 3.4 39 3-41 270-308 (334)
7 TIGR00817 tpt Tpt phosphate/ph 94.0 0.024 5.1E-07 40.2 1.0 37 4-40 259-295 (302)
8 PTZ00343 triose or hexose phos 92.8 0.1 2.3E-06 38.6 2.8 35 4-38 314-348 (350)
9 PF03151 TPT: Triose-phosphate 92.7 0.11 2.5E-06 32.7 2.5 34 4-37 119-152 (153)
10 PRK10532 threonine and homoser 92.0 0.27 5.9E-06 35.0 3.9 37 4-40 247-283 (293)
11 PF00892 EamA: EamA-like trans 89.2 0.53 1.1E-05 27.8 2.9 34 3-36 91-124 (126)
12 KOG1580 UDP-galactose transpor 88.9 0.91 2E-05 35.2 4.7 48 5-52 280-332 (337)
13 PRK10452 multidrug efflux syst 87.9 0.78 1.7E-05 30.4 3.4 36 2-37 67-102 (120)
14 PRK09541 emrE multidrug efflux 87.1 0.76 1.6E-05 29.8 2.9 36 2-37 67-102 (110)
15 PRK15051 4-amino-4-deoxy-L-ara 87.1 0.58 1.2E-05 30.0 2.3 35 2-36 73-107 (111)
16 PRK02971 4-amino-4-deoxy-L-ara 85.1 1.5 3.2E-05 29.0 3.5 36 5-40 87-124 (129)
17 TIGR03340 phn_DUF6 phosphonate 84.8 0.97 2.1E-05 31.9 2.7 33 3-35 248-280 (281)
18 PRK11453 O-acetylserine/cystei 84.3 1.2 2.6E-05 31.8 3.0 37 4-40 253-289 (299)
19 PRK11431 multidrug efflux syst 83.1 1.2 2.6E-05 28.8 2.4 34 2-35 66-99 (105)
20 PRK11689 aromatic amino acid e 82.0 1.6 3.5E-05 31.1 3.0 34 4-37 253-286 (295)
21 PRK11272 putative DMT superfam 82.0 1.2 2.6E-05 31.6 2.3 35 4-38 251-285 (292)
22 PRK15430 putative chlorampheni 79.5 2.2 4.8E-05 30.4 2.9 31 4-34 251-281 (296)
23 PRK10650 multidrug efflux syst 79.4 2.2 4.8E-05 27.8 2.7 33 3-35 73-105 (109)
24 COG0697 RhaT Permeases of the 79.2 2.7 5.8E-05 28.1 3.1 36 4-39 253-288 (292)
25 KOG1582 UDP-galactose transpor 78.1 2 4.4E-05 33.8 2.5 36 5-40 299-334 (367)
26 KOG2765 Predicted membrane pro 76.1 4.8 0.0001 32.3 4.2 43 1-43 353-395 (416)
27 PF04304 DUF454: Protein of un 74.8 3.4 7.4E-05 24.1 2.4 36 2-37 35-70 (71)
28 PF00893 Multi_Drug_Res: Small 73.6 1.8 3.9E-05 26.7 1.0 26 3-28 67-92 (93)
29 PF13536 EmrE: Multidrug resis 72.6 3.6 7.9E-05 25.4 2.3 36 2-37 70-105 (113)
30 COG2076 EmrE Membrane transpor 72.0 4.2 9E-05 26.9 2.5 33 3-35 68-100 (106)
31 PF04142 Nuc_sug_transp: Nucle 71.8 6.3 0.00014 28.3 3.6 41 3-43 54-94 (244)
32 TIGR00950 2A78 Carboxylate/Ami 70.5 5.1 0.00011 27.1 2.7 30 4-33 230-259 (260)
33 KOG1583 UDP-N-acetylglucosamin 59.3 7.3 0.00016 30.5 2.0 34 5-38 281-314 (330)
34 COG2510 Predicted membrane pro 59.2 8.2 0.00018 27.0 2.1 34 2-35 103-136 (140)
35 TIGR03340 phn_DUF6 phosphonate 56.6 13 0.00028 26.2 2.8 36 3-38 100-135 (281)
36 KOG1581 UDP-galactose transpor 54.7 5.5 0.00012 31.1 0.7 37 5-41 280-316 (327)
37 PF08449 UAA: UAA transporter 52.9 22 0.00047 25.5 3.5 39 3-41 101-139 (303)
38 KOG1441 Glucose-6-phosphate/ph 47.7 4.7 0.0001 30.7 -0.6 36 7-42 276-311 (316)
39 PF04241 DUF423: Protein of un 47.2 23 0.00051 21.9 2.6 21 18-38 54-74 (89)
40 PF10183 ESSS: ESSS subunit of 46.6 20 0.00043 23.0 2.2 29 15-43 58-86 (105)
41 PF04156 IncA: IncA protein; 46.0 15 0.00034 24.6 1.8 17 4-20 19-35 (191)
42 PF11712 Vma12: Endoplasmic re 44.5 19 0.00041 23.8 2.0 6 32-37 127-132 (142)
43 PF02238 COX7a: Cytochrome c o 43.4 17 0.00037 21.6 1.5 29 12-41 28-56 (56)
44 PF04342 DUF486: Protein of un 42.3 25 0.00054 23.6 2.3 32 4-35 74-105 (108)
45 PF10639 UPF0546: Uncharacteri 41.1 16 0.00034 24.2 1.1 34 2-35 78-111 (113)
46 TIGR00688 rarD rarD protein. T 39.4 38 0.00082 23.3 2.9 31 4-34 108-138 (256)
47 PRK15430 putative chlorampheni 36.4 45 0.00097 23.7 3.0 34 4-37 111-144 (296)
48 PF14209 DUF4321: Domain of un 35.5 23 0.00049 20.1 1.1 20 14-36 30-49 (49)
49 PF06027 DUF914: Eukaryotic pr 35.0 52 0.0011 25.1 3.3 36 2-37 115-150 (334)
50 PRK11453 O-acetylserine/cystei 34.3 49 0.0011 23.5 2.9 34 4-37 98-131 (299)
51 TIGR00817 tpt Tpt phosphate/ph 33.8 51 0.0011 23.3 2.9 35 3-37 102-136 (302)
52 PF10856 DUF2678: Protein of u 33.1 20 0.00044 24.4 0.7 29 4-32 42-74 (118)
53 PRK10873 hypothetical protein; 32.4 48 0.001 22.2 2.5 20 19-38 73-92 (131)
54 TIGR00950 2A78 Carboxylate/Ami 32.2 62 0.0013 21.8 3.0 35 4-38 85-119 (260)
55 TIGR00776 RhaT RhaT L-rhamnose 30.7 47 0.001 23.9 2.3 37 3-39 97-137 (290)
56 KOG1623 Multitransmembrane pro 29.6 18 0.00039 26.9 0.0 43 7-49 111-153 (243)
57 TIGR00966 3a0501s07 protein-ex 28.7 62 0.0013 23.1 2.7 26 6-31 137-162 (246)
58 PTZ00343 triose or hexose phos 28.3 70 0.0015 23.7 3.0 34 4-37 152-185 (350)
59 PF05232 BTP: Bacterial Transm 28.1 71 0.0015 19.0 2.5 31 2-32 17-47 (67)
60 PF07857 DUF1632: CEO family ( 28.0 65 0.0014 23.9 2.7 33 13-45 104-141 (254)
61 PRK10527 hypothetical protein; 28.0 63 0.0014 21.6 2.4 35 6-41 84-118 (125)
62 PRK14789 lipoprotein signal pe 27.3 62 0.0013 23.1 2.4 28 19-46 132-159 (191)
63 PRK07118 ferredoxin; Validated 26.6 47 0.001 24.6 1.7 30 2-37 2-31 (280)
64 PF07444 Ycf66_N: Ycf66 protei 26.4 57 0.0012 20.7 1.9 24 15-38 2-25 (84)
65 PF03899 ATP_synt_I: ATP synth 26.3 70 0.0015 18.7 2.2 31 7-37 14-44 (100)
66 PF06522 B12D: NADH-ubiquinone 25.8 60 0.0013 19.5 1.9 20 18-37 7-26 (73)
67 TIGR00776 RhaT RhaT L-rhamnose 25.5 56 0.0012 23.5 2.0 33 4-36 250-286 (290)
68 PRK12887 ubiA tocopherol phyty 24.0 66 0.0014 23.9 2.2 19 30-48 130-148 (308)
69 CHL00024 psbI photosystem II p 23.8 44 0.00095 18.5 0.9 13 31-43 16-28 (36)
70 PRK04570 cell division protein 23.3 1.2E+02 0.0026 22.9 3.4 19 27-45 16-34 (243)
71 KOG2766 Predicted membrane pro 22.5 80 0.0017 24.8 2.4 28 11-38 272-299 (336)
72 PF11026 DUF2721: Protein of u 21.2 62 0.0014 21.2 1.4 33 2-34 72-113 (130)
73 PRK05113 electron transport co 21.0 97 0.0021 21.6 2.4 29 2-36 2-30 (191)
74 PRK05812 secD preprotein trans 20.8 87 0.0019 25.2 2.4 25 7-31 372-396 (498)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.13 E-value=3.6e-11 Score=91.98 Aligned_cols=51 Identities=29% Similarity=0.486 Sum_probs=42.7
Q ss_pred CceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCCCccCCCCCCCC
Q 035308 1 MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKA 52 (68)
Q Consensus 1 ~AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~~~~~~~~~~~~ 52 (68)
+||++++++|+++|||+||++|++|+.+|+.|+++|+.+|... +.++..+.
T Consensus 285 ~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~-~~~~~~~~ 335 (345)
T KOG2234|consen 285 VAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD-AQKNYNPL 335 (345)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc-ccccCCCC
Confidence 4899999999999999999999999999999999999655544 44444333
No 2
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.51 E-value=3.7e-05 Score=52.54 Aligned_cols=35 Identities=29% Similarity=0.619 Sum_probs=33.1
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhc
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMY 36 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY 36 (68)
.+++|+++|+++||.+++.++++|+.+|..++++|
T Consensus 188 ~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 188 SIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 46789999999999999999999999999999998
No 3
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.23 E-value=8.3e-05 Score=53.37 Aligned_cols=29 Identities=45% Similarity=0.835 Sum_probs=27.0
Q ss_pred CceehhhHHHHHHhcccchhhhHhHhHHH
Q 035308 1 MAMLLTMVLSVYLFNFKPTLQLFLGIIIC 29 (68)
Q Consensus 1 ~AIils~v~Sv~lFgf~ltl~F~lGa~lV 29 (68)
++|++++++|+++||++++..|++|+.+|
T Consensus 216 ~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 216 VSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 47899999999999999999999999875
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=95.55 E-value=0.014 Score=44.10 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=42.3
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCCCccCCCCCCCCCCCCcce
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLRE 59 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~~~~~~~~~~~~~~~kl~~ 59 (68)
+.+++.+++++|.++++.-++|..+++.++++-..++.+-.+.+...+.++++++.
T Consensus 294 V~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~ 349 (358)
T PLN00411 294 LIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFSGKEKTPL 349 (358)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCccccccchh
Confidence 56888999999999999999999999999999775544433333343346676654
No 5
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=95.44 E-value=0.011 Score=42.39 Aligned_cols=40 Identities=20% Similarity=0.430 Sum_probs=35.8
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCCCc
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGML 43 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~~~ 43 (68)
++|.++|+++||.+++..-+.|+.+|..++.+|..++++.
T Consensus 263 ~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 263 FLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 4678999999999999999999999999999999877653
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=94.41 E-value=0.047 Score=41.52 Aligned_cols=39 Identities=10% Similarity=0.413 Sum_probs=33.7
Q ss_pred eehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCC
Q 035308 3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPG 41 (68)
Q Consensus 3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~ 41 (68)
.+.+.+.++++|+.++++.+.+|..++++.+.+|..-++
T Consensus 270 d~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 270 DFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred hHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 445678899999999999999999999999999995333
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=94.02 E-value=0.024 Score=40.23 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=32.6
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCC
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPP 40 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~ 40 (68)
+++++.|+++||.+++..-.+|..+++.++++|+.-|
T Consensus 259 v~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 259 VVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred hheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 3556788999999999999999999999999999644
No 8
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=92.79 E-value=0.1 Score=38.65 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=32.3
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccC
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFA 38 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~ 38 (68)
+++.+.|+++||-+++..-.+|..+++.++++|+.
T Consensus 314 V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~ 348 (350)
T PTZ00343 314 VVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL 348 (350)
T ss_pred HHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence 46778899999999999999999999999999985
No 9
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=92.73 E-value=0.11 Score=32.71 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=31.5
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~ 37 (68)
+++.+.|+++||-+++..-.+|..+.++..++|+
T Consensus 119 ~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 119 ILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 4678899999999999999999999999999996
No 10
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=91.96 E-value=0.27 Score=35.04 Aligned_cols=37 Identities=14% Similarity=-0.004 Sum_probs=33.0
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCC
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPP 40 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~ 40 (68)
+.+++.++.+||.+++..-.+|..++++++..+..+.
T Consensus 247 v~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 247 ALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 5788899999999999999999999999998887543
No 11
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=89.22 E-value=0.53 Score=27.76 Aligned_cols=34 Identities=15% Similarity=0.443 Sum_probs=30.2
Q ss_pred eehhhHHHHHHhcccchhhhHhHhHHHhhhhhhc
Q 035308 3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMY 36 (68)
Q Consensus 3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY 36 (68)
.+++.+.++++++.+++..-.+|..++++++++-
T Consensus 91 pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 91 PVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999987763
No 12
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=88.87 E-value=0.91 Score=35.16 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=36.2
Q ss_pred hhhHHHHHHhcccchhhhHhHhHHHhhhhh---hcc--CCCCCccCCCCCCCC
Q 035308 5 LTMVLSVYLFNFKPTLQLFLGIIICMMSLH---MYF--APPGMLVDIPSTAKA 52 (68)
Q Consensus 5 ls~v~Sv~lFgf~ltl~F~lGa~lV~~Si~---LY~--~p~~~~~~~~~~~~~ 52 (68)
.|.++|+.+||-+++-.-++|+++|..++. .|| .|...+++++.+.+.
T Consensus 280 FTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~a~~t~akkp~~~~~~ 332 (337)
T KOG1580|consen 280 FTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKKAPMTAAKKPLAATEP 332 (337)
T ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCcCccccccCCCcCCCc
Confidence 467899999999999999999999988865 566 455555555444433
No 13
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=87.91 E-value=0.78 Score=30.41 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=31.5
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~ 37 (68)
.++.++++++++||-++++.=.+|..+.++++.+-.
T Consensus 67 G~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 67 GILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 356789999999999999999999999999976644
No 14
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=87.12 E-value=0.76 Score=29.84 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=31.8
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~ 37 (68)
.++.+++.++++||-++++.=.+|..+.++++.+-.
T Consensus 67 G~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 67 GIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999977754
No 15
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=87.06 E-value=0.58 Score=29.95 Aligned_cols=35 Identities=9% Similarity=0.189 Sum_probs=30.5
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhc
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMY 36 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY 36 (68)
..+.++++|+++||.+++..=.+|..+.++.+.+-
T Consensus 73 ~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 73 NFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999998887653
No 16
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=85.07 E-value=1.5 Score=29.03 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=29.4
Q ss_pred hhhHHHHH--HhcccchhhhHhHhHHHhhhhhhccCCC
Q 035308 5 LTMVLSVY--LFNFKPTLQLFLGIIICMMSLHMYFAPP 40 (68)
Q Consensus 5 ls~v~Sv~--lFgf~ltl~F~lGa~lV~~Si~LY~~p~ 40 (68)
+.++++++ +||.++++.-.+|..++++.+++-..++
T Consensus 87 ~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 87 LVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 45556664 7999999999999999999999966533
No 17
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=84.79 E-value=0.97 Score=31.86 Aligned_cols=33 Identities=21% Similarity=0.467 Sum_probs=29.8
Q ss_pred eehhhHHHHHHhcccchhhhHhHhHHHhhhhhh
Q 035308 3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHM 35 (68)
Q Consensus 3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~L 35 (68)
.+.+.+.++++||.+++..-++|..++++++++
T Consensus 248 pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 248 IVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 467889999999999999999999999998875
No 18
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=84.32 E-value=1.2 Score=31.76 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=31.3
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCC
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPP 40 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~ 40 (68)
+.+++.+++++|.+++....+|+.++++++++-..|+
T Consensus 253 v~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 253 VVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 4677888999999999999999999999988754443
No 19
>PRK11431 multidrug efflux system protein; Provisional
Probab=83.14 E-value=1.2 Score=28.81 Aligned_cols=34 Identities=6% Similarity=0.095 Sum_probs=29.8
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhh
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHM 35 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~L 35 (68)
.++.++++++++||-++++.=.+|..+.++++.+
T Consensus 66 G~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~ 99 (105)
T PRK11431 66 GAVGAAITGIVLLGESASPARLLSLALIVAGIIG 99 (105)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999888654
No 20
>PRK11689 aromatic amino acid exporter; Provisional
Probab=82.05 E-value=1.6 Score=31.08 Aligned_cols=34 Identities=12% Similarity=0.333 Sum_probs=29.9
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~ 37 (68)
+++.+.++.++|.+++....+|..+++.++++--
T Consensus 253 v~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 253 VLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 4678889999999999999999999999987643
No 21
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=81.95 E-value=1.2 Score=31.63 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=31.2
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccC
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFA 38 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~ 38 (68)
+.+++.+++++|.+++..-.+|+.+++.++++-..
T Consensus 251 i~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 251 VVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999888664
No 22
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=79.50 E-value=2.2 Score=30.42 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=26.1
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhh
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLH 34 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~ 34 (68)
+++.+.++++||.+++....+|..++..++-
T Consensus 251 v~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~ 281 (296)
T PRK15430 251 TLMFLLAVTFYGEKPGADKMVTFAFIWVALA 281 (296)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999855543
No 23
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=79.38 E-value=2.2 Score=27.81 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=28.5
Q ss_pred eehhhHHHHHHhcccchhhhHhHhHHHhhhhhh
Q 035308 3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHM 35 (68)
Q Consensus 3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~L 35 (68)
++.++++++++||-++++.=.+|..+.+.++-+
T Consensus 73 ~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~ 105 (109)
T PRK10650 73 IAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM 105 (109)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998887654
No 24
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=79.23 E-value=2.7 Score=28.09 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=30.6
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCC
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAP 39 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p 39 (68)
+.+.+.+++++|..++..-.+|+.+++.++.+....
T Consensus 253 v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 253 VFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 344556999999999999999999999998887754
No 25
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=78.09 E-value=2 Score=33.75 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=30.9
Q ss_pred hhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCC
Q 035308 5 LTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPP 40 (68)
Q Consensus 5 ls~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~ 40 (68)
+|-++|+.+|.-++|.|-.-|..+|...|||-=.|+
T Consensus 299 vTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 299 VTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 466899999999999999999999999999744444
No 26
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=76.06 E-value=4.8 Score=32.33 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=36.5
Q ss_pred CceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCCCc
Q 035308 1 MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGML 43 (68)
Q Consensus 1 ~AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~~~ 43 (68)
+.|.|++++.+.+-|-+++..+.+|++.+.++.+.-..+.+..
T Consensus 353 ltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 353 LTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred EeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccc
Confidence 3688999999999999999999999999999988766544433
No 27
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=74.78 E-value=3.4 Score=24.08 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=27.9
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~ 37 (68)
.|.++...|.+++.-++.....++++..++++|+..
T Consensus 35 ~m~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~i~~ 70 (71)
T PF04304_consen 35 MMWLSMGISAFFFVPNLWVRIVLAAILLIVAIYILR 70 (71)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhee
Confidence 355677777777777788888999999888888753
No 28
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=73.60 E-value=1.8 Score=26.71 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=12.3
Q ss_pred eehhhHHHHHHhcccchhhhHhHhHH
Q 035308 3 MLLTMVLSVYLFNFKPTLQLFLGIII 28 (68)
Q Consensus 3 Iils~v~Sv~lFgf~ltl~F~lGa~l 28 (68)
++.++++|+++||.++++.=.+|..+
T Consensus 67 ~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 67 IVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHhheee
Confidence 45667777777777777777777665
No 29
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=72.63 E-value=3.6 Score=25.44 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=30.4
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~ 37 (68)
+.+.+++.+.++|+.+++....+|+.++.+.+.+=.
T Consensus 70 ~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~ 105 (113)
T PF13536_consen 70 SPIFTALLSWLFFKERLSPRRWLAILLILIGVILIA 105 (113)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999888866543
No 30
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=71.96 E-value=4.2 Score=26.89 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=28.3
Q ss_pred eehhhHHHHHHhcccchhhhHhHhHHHhhhhhh
Q 035308 3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHM 35 (68)
Q Consensus 3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~L 35 (68)
++.++++++++||-+++..=.+|..+.++.+-.
T Consensus 68 ~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~ 100 (106)
T COG2076 68 IVGTALVGVLLFGESLSLIKLLGLALILAGVIG 100 (106)
T ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999998887654
No 31
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=71.82 E-value=6.3 Score=28.30 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=35.8
Q ss_pred eehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCCCc
Q 035308 3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGML 43 (68)
Q Consensus 3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~~~ 43 (68)
|+.|++.|+++++-+++..=+++..+.++++-+...+....
T Consensus 54 Il~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 54 ILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 68899999999999999999999999999988877655554
No 32
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=70.48 E-value=5.1 Score=27.13 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=26.6
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhh
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSL 33 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si 33 (68)
+.+.+.+++++|.+++..-.+|+.+++.++
T Consensus 230 v~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 230 LVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 567889999999999999999999988764
No 33
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=59.27 E-value=7.3 Score=30.47 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=30.9
Q ss_pred hhhHHHHHHhcccchhhhHhHhHHHhhhhhhccC
Q 035308 5 LTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFA 38 (68)
Q Consensus 5 ls~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~ 38 (68)
+|-+.|+.+|.=+.+++-++|+.+|..+..+|..
T Consensus 281 vSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 281 VSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999999999983
No 34
>COG2510 Predicted membrane protein [Function unknown]
Probab=59.25 E-value=8.2 Score=26.98 Aligned_cols=34 Identities=18% Similarity=0.514 Sum_probs=28.7
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhh
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHM 35 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~L 35 (68)
+-+++++.|+.++|.+++++=++|+.|..+..-+
T Consensus 103 svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail 136 (140)
T COG2510 103 SVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL 136 (140)
T ss_pred cHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence 3467889999999999999999999998776443
No 35
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=56.57 E-value=13 Score=26.16 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=30.5
Q ss_pred eehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccC
Q 035308 3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFA 38 (68)
Q Consensus 3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~ 38 (68)
.+++++.+.++||.+++..-.+|..+....+.+-..
T Consensus 100 p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 100 PLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999999998888776443
No 36
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=54.67 E-value=5.5 Score=31.13 Aligned_cols=37 Identities=16% Similarity=0.360 Sum_probs=31.2
Q ss_pred hhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCC
Q 035308 5 LTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPG 41 (68)
Q Consensus 5 ls~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~ 41 (68)
.+.++|.++||.+++..=++|...|.+++++=-.-++
T Consensus 280 ~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~ 316 (327)
T KOG1581|consen 280 VSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKK 316 (327)
T ss_pred HHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHH
Confidence 5678899999999999999999999999987543333
No 37
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=52.92 E-value=22 Score=25.50 Aligned_cols=39 Identities=10% Similarity=0.332 Sum_probs=33.9
Q ss_pred eehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCC
Q 035308 3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPG 41 (68)
Q Consensus 3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~ 41 (68)
++.+++.++++++-+.+..=.+|..++++.+.+......
T Consensus 101 ~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~ 139 (303)
T PF08449_consen 101 PIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDS 139 (303)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccc
Confidence 677899999999999999999999999999888775443
No 38
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=47.68 E-value=4.7 Score=30.74 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=30.2
Q ss_pred hHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCCC
Q 035308 7 MVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGM 42 (68)
Q Consensus 7 ~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~~ 42 (68)
-+.|+++|+-+++..=.+|..+-++.+++|+.-+.+
T Consensus 276 i~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~ 311 (316)
T KOG1441|consen 276 IVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLK 311 (316)
T ss_pred EEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 356888887799999999999999999999964443
No 39
>PF04241 DUF423: Protein of unknown function (DUF423); InterPro: IPR006696 This is a potential integral membrane protein with no known function.
Probab=47.23 E-value=23 Score=21.93 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=18.2
Q ss_pred chhhhHhHhHHHhhhhhhccC
Q 035308 18 PTLQLFLGIIICMMSLHMYFA 38 (68)
Q Consensus 18 ltl~F~lGa~lV~~Si~LY~~ 38 (68)
-...|.+|+++.|.|+|.+..
T Consensus 54 a~~l~~~G~~lFsGslY~~al 74 (89)
T PF04241_consen 54 AGWLFLLGTLLFSGSLYYLAL 74 (89)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 356789999999999999884
No 40
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=46.64 E-value=20 Score=23.01 Aligned_cols=29 Identities=3% Similarity=0.126 Sum_probs=22.2
Q ss_pred cccchhhhHhHhHHHhhhhhhccCCCCCc
Q 035308 15 NFKPTLQLFLGIIICMMSLHMYFAPPGML 43 (68)
Q Consensus 15 gf~ltl~F~lGa~lV~~Si~LY~~p~~~~ 43 (68)
|.+....|..+..+|++.++++..|....
T Consensus 58 ~we~~~f~~~~~~~v~~~~~~~y~PD~~i 86 (105)
T PF10183_consen 58 GWELPFFFGFSGSLVFGGVFLAYKPDTSI 86 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 45566777788888999999998886543
No 41
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=46.05 E-value=15 Score=24.56 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=8.5
Q ss_pred ehhhHHHHHHhcccchh
Q 035308 4 LLTMVLSVYLFNFKPTL 20 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl 20 (68)
+++.++-..+|+..++.
T Consensus 19 i~~gI~~Lv~~~~~l~~ 35 (191)
T PF04156_consen 19 IASGIAALVLFISGLGA 35 (191)
T ss_pred HHHHHHHHHHHHhhhHH
Confidence 44555555566544333
No 42
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=44.52 E-value=19 Score=23.79 Aligned_cols=6 Identities=17% Similarity=0.645 Sum_probs=3.9
Q ss_pred hhhhcc
Q 035308 32 SLHMYF 37 (68)
Q Consensus 32 Si~LY~ 37 (68)
=+++|-
T Consensus 127 Ev~l~~ 132 (142)
T PF11712_consen 127 EVVLYI 132 (142)
T ss_pred HHHHHH
Confidence 377775
No 43
>PF02238 COX7a: Cytochrome c oxidase subunit VIIa; InterPro: IPR003177 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. This family is composed of the heart and liver isoforms of cytochrome c oxidase subunit VIIa. ; GO: 0004129 cytochrome-c oxidase activity, 0009055 electron carrier activity, 0005746 mitochondrial respiratory chain; PDB: 2DYS_J 3AG3_W 3AG1_J 1OCC_J 3ABL_J 3AG4_J 3ABM_J 2EIL_W 3AG2_W 2EIM_W ....
Probab=43.44 E-value=17 Score=21.57 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=18.7
Q ss_pred HHhcccchhhhHhHhHHHhhhhhhccCCCC
Q 035308 12 YLFNFKPTLQLFLGIIICMMSLHMYFAPPG 41 (68)
Q Consensus 12 ~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~ 41 (68)
.++...+.+. +.|++.++.+++.|+.|++
T Consensus 28 ~Ly~~Tm~L~-~~gt~~~l~~l~~a~~p~k 56 (56)
T PF02238_consen 28 ILYRVTMPLT-VAGTSYCLYGLGIANMPKK 56 (56)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHTS---
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHhCCCC
Confidence 3444455554 4688888999999998864
No 44
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=42.35 E-value=25 Score=23.59 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=27.2
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhh
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHM 35 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~L 35 (68)
.+=+..|++.+|-++.+....|-.+.++++|+
T Consensus 74 ~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 74 VVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred heeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 34467788888999999999999999998775
No 45
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=41.06 E-value=16 Score=24.23 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=27.4
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhh
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHM 35 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~L 35 (68)
+.+.|++.+.++..-..+..=.+|..++++.+.+
T Consensus 78 ~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 78 AFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 4567888898887777788889999999887654
No 46
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=39.43 E-value=38 Score=23.28 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=24.9
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhh
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLH 34 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~ 34 (68)
+.+++.+.++|+.+++..-.+|..+..+.+.
T Consensus 108 i~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~ 138 (256)
T TIGR00688 108 LVMVALGRVFLKERISRFQFIAVIIATLGVI 138 (256)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4578889999999999988888777766644
No 47
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=36.41 E-value=45 Score=23.73 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=27.9
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~ 37 (68)
+.+++.+.++++.+++..-++|..+..+.+.+-.
T Consensus 111 i~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 111 LVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999999988887766543
No 48
>PF14209 DUF4321: Domain of unknown function (DUF4321)
Probab=35.45 E-value=23 Score=20.15 Aligned_cols=20 Identities=40% Similarity=0.813 Sum_probs=13.3
Q ss_pred hcccchhhhHhHhHHHhhhhhhc
Q 035308 14 FNFKPTLQLFLGIIICMMSLHMY 36 (68)
Q Consensus 14 Fgf~ltl~F~lGa~lV~~Si~LY 36 (68)
|.+++++.-.+|.++ |+++|
T Consensus 30 l~~~inl~sIlGiil---a~~lY 49 (49)
T PF14209_consen 30 LSFKINLASILGIIL---AIWLY 49 (49)
T ss_pred EEEeecHHHHHHHHH---HhhhC
Confidence 356677777777665 66665
No 49
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=35.03 E-value=52 Score=25.13 Aligned_cols=36 Identities=19% Similarity=0.469 Sum_probs=31.8
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~ 37 (68)
+|+.++++|+++..-+.++.=++|..++++.+-+=.
T Consensus 115 ~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~ 150 (334)
T PF06027_consen 115 SIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV 150 (334)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence 578899999999999999999999999988876544
No 50
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=34.28 E-value=49 Score=23.51 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=28.3
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~ 37 (68)
+++.+++.++++.+++....+|..+.++.+.+-.
T Consensus 98 i~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 98 FFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 4677889999999999999999988888866544
No 51
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=33.76 E-value=51 Score=23.29 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=28.8
Q ss_pred eehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308 3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~ 37 (68)
-+++++.+.++++-+++....+|..+.++.+.+-+
T Consensus 102 Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 102 PFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred hHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 45688899999999999999999888888876643
No 52
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=33.06 E-value=20 Score=24.39 Aligned_cols=29 Identities=17% Similarity=0.388 Sum_probs=22.4
Q ss_pred ehhhHHHHHHhccc----chhhhHhHhHHHhhh
Q 035308 4 LLTMVLSVYLFNFK----PTLQLFLGIIICMMS 32 (68)
Q Consensus 4 ils~v~Sv~lFgf~----ltl~F~lGa~lV~~S 32 (68)
++.+++|.+.|+-. +.+.|+..+++++++
T Consensus 42 VLvtii~afvf~~~~p~p~~iffavcI~l~~~s 74 (118)
T PF10856_consen 42 VLVTIISAFVFPQDPPKPLHIFFAVCILLICIS 74 (118)
T ss_pred HHHHHhheEEecCCCCCceEEehHHHHHHHHHH
Confidence 46688888999844 467888888888887
No 53
>PRK10873 hypothetical protein; Provisional
Probab=32.45 E-value=48 Score=22.18 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=17.3
Q ss_pred hhhhHhHhHHHhhhhhhccC
Q 035308 19 TLQLFLGIIICMMSLHMYFA 38 (68)
Q Consensus 19 tl~F~lGa~lV~~Si~LY~~ 38 (68)
...|++|+++.+.|+|.+..
T Consensus 73 ~~l~~~G~~lFsGSlY~~al 92 (131)
T PRK10873 73 SVFLALGTVLFSGSLYCLAL 92 (131)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 35788999999999999985
No 54
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=32.22 E-value=62 Score=21.81 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=29.4
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccC
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFA 38 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~ 38 (68)
+++++.+.++++.+++..-..|..+..+.+.+...
T Consensus 85 ~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 85 LYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 56788888889999999999999998888777553
No 55
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=30.68 E-value=47 Score=23.91 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=29.4
Q ss_pred eehhhHHHHHHhcccchhhh----HhHhHHHhhhhhhccCC
Q 035308 3 MLLTMVLSVYLFNFKPTLQL----FLGIIICMMSLHMYFAP 39 (68)
Q Consensus 3 Iils~v~Sv~lFgf~ltl~F----~lGa~lV~~Si~LY~~p 39 (68)
++.+++.+.++|+...+..= .+|..++++++++....
T Consensus 97 ~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 97 LVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 34567789999998887766 88899999999987654
No 56
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=29.55 E-value=18 Score=26.92 Aligned_cols=43 Identities=23% Similarity=0.445 Sum_probs=33.3
Q ss_pred hHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCCCccCCCCC
Q 035308 7 MVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPST 49 (68)
Q Consensus 7 ~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~~~~~~~~~ 49 (68)
.+....++..+......+|.+++..++.+|+.|........++
T Consensus 111 i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIkt 153 (243)
T KOG1623|consen 111 ILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKT 153 (243)
T ss_pred HHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheec
Confidence 3344556677777788999999999999999998877765444
No 57
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=28.73 E-value=62 Score=23.06 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=19.7
Q ss_pred hhHHHHHHhcccchhhhHhHhHHHhh
Q 035308 6 TMVLSVYLFNFKPTLQLFLGIIICMM 31 (68)
Q Consensus 6 s~v~Sv~lFgf~ltl~F~lGa~lV~~ 31 (68)
-++..+.++|+++++....|..+.++
T Consensus 137 ~~~~~l~~~g~~ln~~sl~gli~~iG 162 (246)
T TIGR00966 137 ITVGVYSLFGIEVNLTTVAALLTIIG 162 (246)
T ss_pred HHHHHHHHHCCcccHHHHHHHHHHHH
Confidence 34556778899999999988877544
No 58
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=28.27 E-value=70 Score=23.72 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=28.1
Q ss_pred ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308 4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~ 37 (68)
+++++.|.++++-+++..-.+|..+.++.+.+-.
T Consensus 152 vft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 152 VFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 4688899999999999999888888888877643
No 59
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=28.10 E-value=71 Score=18.99 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=25.3
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhh
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMS 32 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~S 32 (68)
++++++-+-.+++|..+.-.+.++.++.+.+
T Consensus 17 ~l~~~~P~~a~~~~~~~~~a~~l~v~~s~~a 47 (67)
T PF05232_consen 17 ALLISVPLIAWWLGISLWQAGALDVGLSLFA 47 (67)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4566777777888999999999999888777
No 60
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=27.98 E-value=65 Score=23.87 Aligned_cols=33 Identities=15% Similarity=0.323 Sum_probs=24.0
Q ss_pred Hhcccc-----hhhhHhHhHHHhhhhhhccCCCCCccC
Q 035308 13 LFNFKP-----TLQLFLGIIICMMSLHMYFAPPGMLVD 45 (68)
Q Consensus 13 lFgf~l-----tl~F~lGa~lV~~Si~LY~~p~~~~~~ 45 (68)
|||.+. .+.=.+|..+++++..+|+..|++..+
T Consensus 104 lFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~ 141 (254)
T PF07857_consen 104 LFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKE 141 (254)
T ss_pred eccccccccchhHHHHHHHHHHHHHHHheeeecCCCCC
Confidence 676642 345578999999999999976666533
No 61
>PRK10527 hypothetical protein; Provisional
Probab=27.97 E-value=63 Score=21.61 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=21.8
Q ss_pred hhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCC
Q 035308 6 TMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPG 41 (68)
Q Consensus 6 s~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~ 41 (68)
+...|++ +.-++-....++.+.+++++|+...|..
T Consensus 84 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~i~~~pt~ 118 (125)
T PRK10527 84 TFAISLW-LVQMPWVRILLLVILACLLIFMWRIPVI 118 (125)
T ss_pred HHHHHHH-HhhHHHHHHHHHHHHHHHHHheeecCCC
Confidence 3344443 3445566667777777777888887763
No 62
>PRK14789 lipoprotein signal peptidase; Provisional
Probab=27.35 E-value=62 Score=23.09 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=18.9
Q ss_pred hhhhHhHhHHHhhhhhhccCCCCCccCC
Q 035308 19 TLQLFLGIIICMMSLHMYFAPPGMLVDI 46 (68)
Q Consensus 19 tl~F~lGa~lV~~Si~LY~~p~~~~~~~ 46 (68)
+..-++|+++.+..+++.+.+++.....
T Consensus 132 Di~I~iGvilLl~~~~~~~~~~~~~~~~ 159 (191)
T PRK14789 132 DSAITIGVAALAFHIIFIGEEPAPTEPE 159 (191)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCccCC
Confidence 3455789888888888877655544444
No 63
>PRK07118 ferredoxin; Validated
Probab=26.57 E-value=47 Score=24.57 Aligned_cols=30 Identities=33% Similarity=0.456 Sum_probs=21.2
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~ 37 (68)
.+|+.+++++.. +.+++|.+|.+.|-.+|=
T Consensus 2 ~~i~~~~~~~~~------~g~~~g~~l~~a~~~f~v 31 (280)
T PRK07118 2 NMILFAVLSLGA------LGLVFGILLAFASKKFAV 31 (280)
T ss_pred chHHHHHHHHHH------HHHHHHHHHHHHeeeeec
Confidence 456666666655 447889999999876654
No 64
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=26.38 E-value=57 Score=20.69 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=19.5
Q ss_pred cccchhhhHhHhHHHhhhhhhccC
Q 035308 15 NFKPTLQLFLGIIICMMSLHMYFA 38 (68)
Q Consensus 15 gf~ltl~F~lGa~lV~~Si~LY~~ 38 (68)
++..+....+|+++.++++.+|..
T Consensus 2 n~~~~~~~iLgi~l~~~~~~Ly~l 25 (84)
T PF07444_consen 2 NFGFGPSYILGIILILGGLALYFL 25 (84)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHH
Confidence 455667789999999999999974
No 65
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=26.28 E-value=70 Score=18.66 Aligned_cols=31 Identities=16% Similarity=0.447 Sum_probs=23.2
Q ss_pred hHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308 7 MVLSVYLFNFKPTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 7 ~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~ 37 (68)
+++..+.+|.+..+.+.+|..+.+...++..
T Consensus 14 ~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~ 44 (100)
T PF03899_consen 14 ALVFFLFFGWPVALSFLLGGLISLLNFFLLA 44 (100)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555688999999999999888765544
No 66
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=25.78 E-value=60 Score=19.47 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=14.9
Q ss_pred chhhhHhHhHHHhhhhhhcc
Q 035308 18 PTLQLFLGIIICMMSLHMYF 37 (68)
Q Consensus 18 ltl~F~lGa~lV~~Si~LY~ 37 (68)
+.|.+++|..++.++-+++.
T Consensus 7 ~PL~~~vg~a~~~a~~~~~r 26 (73)
T PF06522_consen 7 YPLFVIVGVAVGGATFYLYR 26 (73)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 45677888888887777765
No 67
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=25.48 E-value=56 Score=23.53 Aligned_cols=33 Identities=15% Similarity=0.392 Sum_probs=26.2
Q ss_pred ehhhHHHHHHhcccchhhhH----hHhHHHhhhhhhc
Q 035308 4 LLTMVLSVYLFNFKPTLQLF----LGIIICMMSLHMY 36 (68)
Q Consensus 4 ils~v~Sv~lFgf~ltl~F~----lGa~lV~~Si~LY 36 (68)
+.+++.++++|+.+.+..=. +|.++++.++.+=
T Consensus 250 via~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~ 286 (290)
T TIGR00776 250 IISTLGGILILGEKKTKREMIAISVGIILIIIAANIL 286 (290)
T ss_pred HHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHH
Confidence 56778889999988876666 9999988887653
No 68
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=24.03 E-value=66 Score=23.89 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=13.3
Q ss_pred hhhhhhccCCCCCccCCCC
Q 035308 30 MMSLHMYFAPPGMLVDIPS 48 (68)
Q Consensus 30 ~~Si~LY~~p~~~~~~~~~ 48 (68)
..-.++|+.||...++.+-
T Consensus 130 ~~lg~~Ys~pP~rlKr~~~ 148 (308)
T PRK12887 130 LLIGTAYSLPPIRLKRFPL 148 (308)
T ss_pred HHHHHHHcCCchhhcccch
Confidence 4457899988877766543
No 69
>CHL00024 psbI photosystem II protein I
Probab=23.79 E-value=44 Score=18.54 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=6.3
Q ss_pred hhhhhccCCCCCc
Q 035308 31 MSLHMYFAPPGML 43 (68)
Q Consensus 31 ~Si~LY~~p~~~~ 43 (68)
+|+|.+|...++.
T Consensus 16 vsLFifGFlsnDp 28 (36)
T CHL00024 16 VSLFIFGFLSNDP 28 (36)
T ss_pred HHHHHccccCCCC
Confidence 4555555444433
No 70
>PRK04570 cell division protein ZipA; Provisional
Probab=23.28 E-value=1.2e+02 Score=22.95 Aligned_cols=19 Identities=5% Similarity=0.207 Sum_probs=14.9
Q ss_pred HHHhhhhhhccCCCCCccC
Q 035308 27 IICMMSLHMYFAPPGMLVD 45 (68)
Q Consensus 27 ~lV~~Si~LY~~p~~~~~~ 45 (68)
.|.+.+||+++-||++.-.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~ 34 (243)
T PRK04570 16 LLLVAAIFLFGRPKKSPQG 34 (243)
T ss_pred HHHHHHHHHhcCCCCCccc
Confidence 3457889999999987655
No 71
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=22.49 E-value=80 Score=24.84 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=24.6
Q ss_pred HHHhcccchhhhHhHhHHHhhhhhhccC
Q 035308 11 VYLFNFKPTLQLFLGIIICMMSLHMYFA 38 (68)
Q Consensus 11 v~lFgf~ltl~F~lGa~lV~~Si~LY~~ 38 (68)
+..||+|.++..++.-.+.+....+|+.
T Consensus 272 i~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 272 IRTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred HHHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 3788999999999999999999999953
No 72
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=21.17 E-value=62 Score=21.18 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=20.4
Q ss_pred ceehhhHHHHHHh---------cccchhhhHhHhHHHhhhhh
Q 035308 2 AMLLTMVLSVYLF---------NFKPTLQLFLGIIICMMSLH 34 (68)
Q Consensus 2 AIils~v~Sv~lF---------gf~ltl~F~lGa~lV~~Si~ 34 (68)
|.+++|+.++.+| +.-+.+.|.+|-.+.+.|..
T Consensus 72 s~ll~~l~i~~lf~~~~~~~~~~~~~~~lF~~am~~l~~sl~ 113 (130)
T PF11026_consen 72 SALLVCLVILLLFLSALLSIDLSWLVAILFVLAMLLLIASLV 113 (130)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665555 22356777777777777743
No 73
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=20.97 E-value=97 Score=21.56 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=20.5
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhc
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMY 36 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY 36 (68)
.+++.+++++.. |.|++|.+|.+.+-.++
T Consensus 2 ~~~~~~~~~~~~------lg~~~g~~l~~a~~~~~ 30 (191)
T PRK05113 2 SAIWIAVAALSL------LALVFGAILGFASRRFK 30 (191)
T ss_pred chHHHHHHHHHH------HHHHHHHHHHHHhcCcc
Confidence 345566666655 55889999988887665
No 74
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=20.81 E-value=87 Score=25.24 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=19.0
Q ss_pred hHHHHHHhcccchhhhHhHhHHHhh
Q 035308 7 MVLSVYLFNFKPTLQLFLGIIICMM 31 (68)
Q Consensus 7 ~v~Sv~lFgf~ltl~F~lGa~lV~~ 31 (68)
++..+.+||+.+++....|.++.++
T Consensus 372 ~l~~~~l~g~~l~l~siaGlil~iG 396 (498)
T PRK05812 372 ILAVLSLLGATLTLPGIAGIVLTIG 396 (498)
T ss_pred HHHHHHHHCCCchHHHHHHHHHhhe
Confidence 3445677799999999998887654
Done!