Query 035308
Match_columns 68
No_of_seqs 89 out of 91
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 17:54:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 96.0 0.0018 6.3E-08 42.4 1.0 38 3-40 68-105 (137)
2 3b5d_A Multidrug transporter E 93.7 0.05 1.7E-06 33.6 2.9 38 2-39 67-104 (110)
3 3arc_I Photosystem II reaction 15.4 40 0.0014 18.1 0.3 8 31-38 16-23 (38)
4 1q90_L Cytochrome B6F complex 12.5 87 0.003 16.0 1.1 9 6-14 2-10 (32)
5 3ne5_A Cation efflux system pr 11.6 1.5E+02 0.0053 23.8 2.8 25 7-31 918-942 (1054)
6 2yev_C CAA3-type cytochrome ox 15.1 51 0.0017 19.5 0.0 25 21-45 6-30 (66)
7 3ne5_A Cation efflux system pr 10.4 1.8E+02 0.0061 23.4 2.8 24 7-30 384-407 (1054)
8 4dx5_A Acriflavine resistance 10.1 1.8E+02 0.0062 23.4 2.8 24 7-30 379-402 (1057)
9 2ls4_A High affinity copper up 13.0 64 0.0022 15.7 0.0 16 2-17 8-23 (26)
10 4dx5_A Acriflavine resistance 9.3 2.1E+02 0.0072 23.0 2.8 25 7-31 912-936 (1057)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=95.98 E-value=0.0018 Score=42.39 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=27.7
Q ss_pred eehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCC
Q 035308 3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPP 40 (68)
Q Consensus 3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~ 40 (68)
.++++++++++||-+++..-.+|+.++++++++.....
T Consensus 68 pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 68 IVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 56789999999999999999999999999999887543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=93.71 E-value=0.05 Score=33.61 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=33.5
Q ss_pred ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCC
Q 035308 2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAP 39 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p 39 (68)
..++++++++++||.+++..=.+|+.+++..+.+....
T Consensus 67 ~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 67 GIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999999999998887653
No 3
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=15.42 E-value=40 Score=18.10 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=3.8
Q ss_pred hhhhhccC
Q 035308 31 MSLHMYFA 38 (68)
Q Consensus 31 ~Si~LY~~ 38 (68)
+|+|.+|.
T Consensus 16 vsLFiFGf 23 (38)
T 3arc_I 16 VLLFVFGF 23 (38)
T ss_dssp HHHHHHHH
T ss_pred HHHHHccc
Confidence 34555553
No 4
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=12.49 E-value=87 Score=16.02 Aligned_cols=9 Identities=11% Similarity=-0.090 Sum_probs=5.6
Q ss_pred hhHHHHHHh
Q 035308 6 TMVLSVYLF 14 (68)
Q Consensus 6 s~v~Sv~lF 14 (68)
.++.|+|.|
T Consensus 2 ~tiisYf~f 10 (32)
T 1q90_L 2 LTITSYVGL 10 (32)
T ss_dssp HHHHHHHHH
T ss_pred chHHHHHHH
Confidence 456777664
No 5
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=11.58 E-value=1.5e+02 Score=23.79 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=19.6
Q ss_pred hHHHHHHhcccchhhhHhHhHHHhh
Q 035308 7 MVLSVYLFNFKPTLQLFLGIIICMM 31 (68)
Q Consensus 7 ~v~Sv~lFgf~ltl~F~lGa~lV~~ 31 (68)
++..++++|.++++...+|.+++++
T Consensus 918 ~~~~l~l~g~~l~~~~~~g~i~l~G 942 (1054)
T 3ne5_A 918 GIWLLWWMGFHLSVATGTGFIALAG 942 (1054)
T ss_dssp HHHHHHHHTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHHHHHH
Confidence 4455778899999999999877655
No 6
>2yev_C CAA3-type cytochrome oxidase subunit IV; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=15.14 E-value=51 Score=19.55 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=19.7
Q ss_pred hhHhHhHHHhhhhhhccCCCCCccC
Q 035308 21 QLFLGIIICMMSLHMYFAPPGMLVD 45 (68)
Q Consensus 21 ~F~lGa~lV~~Si~LY~~p~~~~~~ 45 (68)
.|++|+.+|-.-.|+--.|+.-+.+
T Consensus 6 lF~iGa~lVt~~~Yl~lnPR~late 30 (66)
T 2yev_C 6 LFALGAALVTLFFYLILNPRVLTTE 30 (66)
Confidence 5899999998888887777765544
No 7
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=10.41 E-value=1.8e+02 Score=23.42 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=17.1
Q ss_pred hHHHHHHhcccchhhhHhHhHHHh
Q 035308 7 MVLSVYLFNFKPTLQLFLGIIICM 30 (68)
Q Consensus 7 ~v~Sv~lFgf~ltl~F~lGa~lV~ 30 (68)
++.-++++|+++++....|.++.+
T Consensus 384 ~~~~l~~~g~~ln~~sl~gl~l~i 407 (1054)
T 3ne5_A 384 AFIVMHFQGLNANIMSLGGIAIAV 407 (1054)
T ss_dssp HHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Confidence 444567789999988877765443
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=10.10 E-value=1.8e+02 Score=23.40 Aligned_cols=24 Identities=13% Similarity=0.355 Sum_probs=17.2
Q ss_pred hHHHHHHhcccchhhhHhHhHHHh
Q 035308 7 MVLSVYLFNFKPTLQLFLGIIICM 30 (68)
Q Consensus 7 ~v~Sv~lFgf~ltl~F~lGa~lV~ 30 (68)
++..++++|+++++.-.+|.++.+
T Consensus 379 ~~~~l~~~g~~ln~~sl~gl~~~i 402 (1057)
T 4dx5_A 379 TFAVLAAFGFSINTLTMFGMVLAI 402 (1057)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHe
Confidence 444567789998888887766554
No 9
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=13.03 E-value=64 Score=15.71 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=9.2
Q ss_pred ceehhhHHHHHHhccc
Q 035308 2 AMLLTMVLSVYLFNFK 17 (68)
Q Consensus 2 AIils~v~Sv~lFgf~ 17 (68)
|+++-+.+-.|+||..
T Consensus 8 avvlGa~~Gyf~F~~~ 23 (26)
T 2ls4_A 8 AVAAGAGTGYFLFSWK 23 (26)
Confidence 4555555666666543
No 10
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=9.25 E-value=2.1e+02 Score=23.03 Aligned_cols=25 Identities=8% Similarity=0.218 Sum_probs=18.7
Q ss_pred hHHHHHHhcccchhhhHhHhHHHhh
Q 035308 7 MVLSVYLFNFKPTLQLFLGIIICMM 31 (68)
Q Consensus 7 ~v~Sv~lFgf~ltl~F~lGa~lV~~ 31 (68)
++..++++|.++++...+|.++.++
T Consensus 912 ~~~~l~~~g~~l~~~~~~g~i~l~G 936 (1057)
T 4dx5_A 912 ALLAATFRGLTNDVYFQVGLLTTIG 936 (1057)
T ss_dssp HHHHHHHHTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHHHHHH
Confidence 4445677899999988888876544
Done!