Query 035308
Match_columns 68
No_of_seqs 89 out of 91
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 17:54:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035308.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035308hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54j_ f.23.4.1 (J:) Mitochon 11.0 94 0.0069 16.4 2.5 30 11-41 29-58 (58)
2 d1iwga8 f.35.1.1 (A:513-566,A: 8.7 1.2E+02 0.0088 18.4 2.8 24 7-30 98-121 (222)
3 d2if1a_ d.64.1.1 (A:) Eukaryot 8.5 87 0.0063 18.5 1.9 14 53-66 39-52 (126)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 5.0 1.2E+02 0.009 14.4 1.0 10 29-38 17-26 (34)
5 d2gc6a1 c.59.1.2 (A:297-425) F 5.0 24 0.0017 19.2 -2.2 12 26-37 110-121 (129)
6 d2axtf1 f.23.38.1 (F:11-45) Cy 4.3 1.3E+02 0.0093 14.5 0.7 14 15-28 15-28 (35)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 4.0 2.9E+02 0.021 16.1 2.5 22 7-28 80-101 (199)
8 d2riga_ a.26.1.3 (A:) Interfer 3.8 1.4E+02 0.01 17.7 0.8 12 3-14 44-55 (119)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 3.8 1.8E+02 0.013 14.0 1.1 12 4-15 26-37 (37)
10 d2pkgc1 g.92.1.1 (C:91-170) Sm 3.8 1.6E+02 0.012 16.4 1.0 11 13-23 57-67 (80)
No 1
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.01 E-value=94 Score=16.40 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=18.3
Q ss_pred HHHhcccchhhhHhHhHHHhhhhhhccCCCC
Q 035308 11 VYLFNFKPTLQLFLGIIICMMSLHMYFAPPG 41 (68)
Q Consensus 11 v~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~ 41 (68)
..+|..+..+. +.|++-.+-++|..+.|++
T Consensus 29 ~~LYr~Tm~L~-~~G~~~s~~~l~~a~~PkK 58 (58)
T d1v54j_ 29 NILYRVTMTLC-LGGTLYSLYCLGWASFPHK 58 (58)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhCCCC
Confidence 34444444444 4566666777888888874
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.73 E-value=1.2e+02 Score=18.37 Aligned_cols=24 Identities=8% Similarity=0.275 Sum_probs=16.6
Q ss_pred hHHHHHHhcccchhhhHhHhHHHh
Q 035308 7 MVLSVYLFNFKPTLQLFLGIIICM 30 (68)
Q Consensus 7 ~v~Sv~lFgf~ltl~F~lGa~lV~ 30 (68)
++...+++|.+++.....|.++.+
T Consensus 98 ~~~~l~~~g~~~~~~~~~g~i~l~ 121 (222)
T d1iwga8 98 ALLAATFRGLTNDVYFQVGLLTTI 121 (222)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCchhhhhcccccchh
Confidence 345566778888887777766643
No 3
>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.54 E-value=87 Score=18.49 Aligned_cols=14 Identities=7% Similarity=0.387 Sum_probs=9.9
Q ss_pred CCCCcceEEEeeec
Q 035308 53 APDSLREVSVERRT 66 (68)
Q Consensus 53 ~~~kl~~v~~~~~~ 66 (68)
-.++.+++.+++|.
T Consensus 39 ~~~~~I~I~~ekR~ 52 (126)
T d2if1a_ 39 GTEDYIHIRIQQRN 52 (126)
T ss_dssp SCTTCEECCCCCSS
T ss_pred CCcceEEEEEEecC
Confidence 45667788888774
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.01 E-value=1.2e+02 Score=14.45 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=7.2
Q ss_pred HhhhhhhccC
Q 035308 29 CMMSLHMYFA 38 (68)
Q Consensus 29 V~~Si~LY~~ 38 (68)
..+.+|+|+.
T Consensus 17 ~~vG~FfYGs 26 (34)
T d2axtj1 17 VIVGLFFYGA 26 (34)
T ss_dssp HHHHHHHHHT
T ss_pred hheeeeeeee
Confidence 3566899985
No 5
>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Probab=4.96 E-value=24 Score=19.16 Aligned_cols=12 Identities=25% Similarity=0.033 Sum_probs=7.9
Q ss_pred hHHHhhhhhhcc
Q 035308 26 IIICMMSLHMYF 37 (68)
Q Consensus 26 a~lV~~Si~LY~ 37 (68)
.+++++|+||-+
T Consensus 110 ~vli~GS~ylvg 121 (129)
T d2gc6a1 110 PIVITGSLYLAS 121 (129)
T ss_dssp CEEEESCHHHHH
T ss_pred cEEEEehHHHHH
Confidence 356677777754
No 6
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.30 E-value=1.3e+02 Score=14.45 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=10.1
Q ss_pred cccchhhhHhHhHH
Q 035308 15 NFKPTLQLFLGIII 28 (68)
Q Consensus 15 gf~ltl~F~lGa~l 28 (68)
+..+.-.|+||++-
T Consensus 15 ~l~vptvfFlGai~ 28 (35)
T d2axtf1 15 TLAVPTIFFLGAIA 28 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hcccchhhhHhHHH
Confidence 45566778999875
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.97 E-value=2.9e+02 Score=16.13 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=12.2
Q ss_pred hHHHHHHhcccchhhhHhHhHH
Q 035308 7 MVLSVYLFNFKPTLQLFLGIII 28 (68)
Q Consensus 7 ~v~Sv~lFgf~ltl~F~lGa~l 28 (68)
++.-+.++|.+++..-..+..+
T Consensus 80 ~~~~m~~~g~~l~~~s~~~~~i 101 (199)
T d1iwga7 80 TFAVLAAFGFSINTLTMFGMVL 101 (199)
T ss_dssp HHHHHHTTTCCSCHHHHHHHHH
T ss_pred HHHHhhcCCCchHHHHHHHHHH
Confidence 3444666777777655444433
No 8
>d2riga_ a.26.1.3 (A:) Interferon-gamma {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=3.83 E-value=1.4e+02 Score=17.69 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=8.7
Q ss_pred eehhhHHHHHHh
Q 035308 3 MLLTMVLSVYLF 14 (68)
Q Consensus 3 Iils~v~Sv~lF 14 (68)
||+|-|+|+|+-
T Consensus 44 Ii~SQIvs~Y~k 55 (119)
T d2riga_ 44 IIQSQIVSFYFK 55 (119)
T ss_pred hHHHHHHHHHHH
Confidence 567778887763
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.80 E-value=1.8e+02 Score=14.01 Aligned_cols=12 Identities=42% Similarity=0.966 Sum_probs=0.0
Q ss_pred ehhhHHHHHHhc
Q 035308 4 LLTMVLSVYLFN 15 (68)
Q Consensus 4 ils~v~Sv~lFg 15 (68)
++..+.|-|+|+
T Consensus 26 vl~vLFssYfFN 37 (37)
T d2axtl1 26 VLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
No 10
>d2pkgc1 g.92.1.1 (C:91-170) Small t antigen, ST-AG {Simian virus 40 [TaxId: 10633]}
Probab=3.79 E-value=1.6e+02 Score=16.37 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=0.0
Q ss_pred HhcccchhhhH
Q 035308 13 LFNFKPTLQLF 23 (68)
Q Consensus 13 lFgf~ltl~F~ 23 (68)
+|||+++..-+
T Consensus 57 WFG~~~t~~~f 67 (80)
T d2pkgc1 57 WFGLDLCEGTL 67 (80)
T ss_dssp HHTCCSSHHHH
T ss_pred HhCCCchHHHH
Done!