Query 035311
Match_columns 68
No_of_seqs 119 out of 503
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ku1_A ARF guanine-nucleotide 99.6 1.4E-16 4.8E-21 110.6 4.7 43 1-43 185-227 (230)
2 1r8s_E ARNO; protein transport 99.6 5.8E-16 2E-20 105.9 5.0 43 1-43 159-201 (203)
3 3ltl_A Brefeldin A-inhibited g 99.6 7.6E-16 2.6E-20 105.9 5.0 43 1-43 167-209 (211)
4 1xsz_A Guanine nucleotide exch 99.4 2.1E-13 7.2E-18 99.7 5.0 43 1-43 159-201 (356)
5 2r09_A Cytohesin-3; autoinhibi 99.3 1.1E-12 3.8E-17 93.6 3.6 55 1-55 161-219 (347)
6 2d8d_A Aroag, phospho-2-dehydr 43.5 15 0.0005 20.8 2.1 27 10-37 57-83 (90)
7 1b0n_B Protein (SINI protein); 37.7 19 0.00063 19.6 1.8 15 51-65 12-26 (57)
8 1jw2_A Hemolysin expression mo 37.2 51 0.0017 18.9 3.7 28 1-33 6-33 (72)
9 4i1o_B LEPB; GAP, rabgap, hydr 33.5 14 0.00047 26.2 1.0 37 25-62 1-38 (302)
10 2hiy_A Hypothetical protein; C 33.2 15 0.00052 23.7 1.1 33 5-37 6-40 (183)
11 3ret_A Salicylate biosynthesis 33.0 10 0.00036 22.1 0.3 20 16-35 67-86 (101)
12 2gbb_A Putative chorismate mut 31.4 13 0.00044 23.7 0.5 30 7-36 41-70 (156)
13 1wlm_A Protein CGI-38; structu 29.1 58 0.002 20.7 3.3 34 1-34 37-72 (151)
14 1yrx_A Hypothetical protein RS 28.3 41 0.0014 20.5 2.4 16 20-35 56-71 (121)
15 2fp1_A Chorismate mutase; alph 28.1 18 0.00061 23.2 0.8 30 7-36 44-73 (166)
16 1eh1_A Ribosome recycling fact 27.9 79 0.0027 20.7 3.9 47 18-64 70-121 (185)
17 2iyg_A APPA, antirepressor of 27.4 41 0.0014 20.6 2.3 16 20-35 68-83 (124)
18 1dd5_A Ribosome recycling fact 26.1 1.1E+02 0.0036 20.1 4.3 47 18-64 69-120 (185)
19 1fs1_A SKP2 F-BOX, cyclin A/CD 26.0 42 0.0014 16.5 1.9 15 17-31 10-24 (53)
20 1ise_A Ribosome recycling fact 25.5 1E+02 0.0036 20.1 4.2 47 18-64 69-120 (185)
21 2iue_A Pactolus I-domain; memb 25.0 40 0.0014 22.4 2.1 36 4-39 64-102 (212)
22 2jrf_A Tubulin polymerization- 24.5 73 0.0025 21.0 3.3 34 1-34 30-65 (184)
23 2gtv_X CM, chorismate mutase; 24.1 9.1 0.00031 23.0 -1.1 19 15-33 70-88 (104)
24 2ffs_A Hypothetical protein PA 24.0 49 0.0017 21.2 2.3 18 51-68 23-40 (157)
25 1wqg_A Ribosome recycling fact 23.7 1.1E+02 0.0038 19.9 4.0 47 18-64 69-120 (185)
26 2b67_A COG0778: nitroreductase 23.7 1.1E+02 0.0038 18.5 3.9 35 1-35 4-40 (204)
27 2jqt_A H-NS/STPA-binding prote 22.7 40 0.0014 19.3 1.5 28 1-33 1-28 (71)
28 3t49_A SCIN-B, fibrinogen-bind 22.3 38 0.0013 19.4 1.3 12 21-32 57-68 (73)
29 3of4_A Nitroreductase; structu 21.9 1.2E+02 0.004 19.0 3.8 36 1-36 2-39 (209)
30 1x0p_A Hypothetical protein TL 21.7 49 0.0017 20.5 1.9 16 20-35 55-70 (143)
31 3gr3_A Nitroreductase; structu 21.2 1.6E+02 0.0055 18.4 4.4 35 1-35 7-43 (230)
32 1is1_A Ribosome recycling fact 21.2 1E+02 0.0036 20.1 3.5 47 18-64 69-120 (185)
33 2qff_A Hypothetical protein; c 21.1 41 0.0014 19.7 1.3 12 21-32 67-78 (82)
34 2k89_A PLA2P, PLAP, phospholip 20.5 52 0.0018 19.0 1.7 17 18-34 53-69 (80)
35 1ecm_A Endo-oxabicyclic transi 20.4 69 0.0023 18.5 2.3 20 17-36 66-85 (109)
36 3eo8_A BLUB-like flavoprotein; 20.4 1.6E+02 0.0054 18.0 4.3 35 1-35 2-38 (219)
37 2bf9_A Pancreatic hormone; tur 20.4 95 0.0033 15.5 2.9 20 13-32 6-25 (36)
38 2hfn_A Synechocystis photorece 20.3 54 0.0019 20.6 1.9 16 20-35 58-73 (153)
39 2win_M Staphylococcal compleme 20.1 44 0.0015 19.9 1.3 13 21-33 74-86 (92)
No 1
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=99.64 E-value=1.4e-16 Score=110.59 Aligned_cols=43 Identities=28% Similarity=0.345 Sum_probs=38.8
Q ss_pred CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCc
Q 035311 1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQC 43 (68)
Q Consensus 1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~ 43 (68)
||+++||+|+||+|+|+|||++||++||++|+++||+|++|++
T Consensus 185 MT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~~ 227 (230)
T 1ku1_A 185 MSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEHH 227 (230)
T ss_dssp CCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC----
T ss_pred CCHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhCcccCCccCC
Confidence 9999999999999999999999999999999999999999975
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=99.60 E-value=5.8e-16 Score=105.86 Aligned_cols=43 Identities=37% Similarity=0.559 Sum_probs=40.6
Q ss_pred CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCc
Q 035311 1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQC 43 (68)
Q Consensus 1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~ 43 (68)
||+++||+|+||+|+|+|||+++|+.||++|+++||+++++++
T Consensus 159 Mt~~~Fi~n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~~ 201 (203)
T 1r8s_E 159 MGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDG 201 (203)
T ss_dssp CCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC--
T ss_pred cCHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhCCCCCccCcC
Confidence 9999999999999999999999999999999999999999875
No 3
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=99.60 E-value=7.6e-16 Score=105.89 Aligned_cols=43 Identities=37% Similarity=0.650 Sum_probs=38.7
Q ss_pred CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCc
Q 035311 1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQC 43 (68)
Q Consensus 1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~ 43 (68)
||+++||+|+||+|+|+|||+++|+.||++|+++||+|+++..
T Consensus 167 Mt~~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~~ 209 (211)
T 3ltl_A 167 MTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKE 209 (211)
T ss_dssp CCHHHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC----
T ss_pred CCHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhCCccCCCCCC
Confidence 9999999999999999999999999999999999999998864
No 4
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=99.40 E-value=2.1e-13 Score=99.71 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=40.6
Q ss_pred CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCc
Q 035311 1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQC 43 (68)
Q Consensus 1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~ 43 (68)
||+++||+|+||+|+|+|||+++|+.||++|+++||+++..+.
T Consensus 159 MT~~dFikN~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~~ 201 (356)
T 1xsz_A 159 MTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKT 201 (356)
T ss_dssp CCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCSS
T ss_pred CCHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhCCCccCCccc
Confidence 9999999999999999999999999999999999999986543
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=99.30 E-value=1.1e-12 Score=93.57 Aligned_cols=55 Identities=35% Similarity=0.541 Sum_probs=47.7
Q ss_pred CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCcC----CCCccchHHHH
Q 035311 1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCA----GFPEITQSCWI 55 (68)
Q Consensus 1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~~----~~~~~~~~~W~ 55 (68)
||+++||+|+||+|+|+|||+++|+.+|++|+++||.++++++. .+.++...||+
T Consensus 161 mt~~~fi~n~~~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~~~l~~~f~~~~k~G~L 219 (347)
T 2r09_A 161 PTAERFITMNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTYTFFNPDREGWL 219 (347)
T ss_dssp CCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCSCCGGGCCCCCCEEEEE
T ss_pred CCHHHHHHHhhcccCCCCCCHHHHHHHHHhhccCcccccccccccccccccccccCCee
Confidence 89999999999999999999999999999999999999987642 34455566665
No 6
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=43.52 E-value=15 Score=20.81 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=19.1
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHhcCCcc
Q 035311 10 NGHINGGNDLPREFLSKLYHSICKNEIG 37 (68)
Q Consensus 10 nrGin~G~Dlp~e~L~~iY~sI~~~ei~ 37 (68)
.+..+ ...||+++++.||..|-+..+.
T Consensus 57 ~~~~~-~~~l~~~~i~~if~~ii~~s~~ 83 (90)
T 2d8d_A 57 LTAEN-PGPFPDETIRKLFKEIFKASLD 83 (90)
T ss_dssp HHHHC-CSSSCHHHHHHHHHHHHHHTC-
T ss_pred HHHHc-cCCCCHHHHHHHHHHHHHHHHH
Confidence 33344 4689999999999998765543
No 7
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=37.69 E-value=19 Score=19.61 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhhc
Q 035311 51 QSCWIDLMRSLRKQL 65 (68)
Q Consensus 51 ~~~W~~l~~~~~~~~ 65 (68)
+..|..||++++..|
T Consensus 12 d~ewl~LI~~Ak~lG 26 (57)
T 1b0n_B 12 DQEWVELMVEAKEAN 26 (57)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 788999999999887
No 8
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=37.23 E-value=51 Score=18.86 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=22.0
Q ss_pred CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhc
Q 035311 1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICK 33 (68)
Q Consensus 1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~ 33 (68)
||+++|+--.|-++. .|-|+.+|+..+.
T Consensus 6 Mtk~d~L~k~Rrc~s-----~eTLEkv~e~~~y 33 (72)
T 1jw2_A 6 LTKTDYLMRLRRCQT-----IDTLERVIEKNKY 33 (72)
T ss_dssp CCHHHHHHHHHTSSC-----HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcCc-----HHHHHHHHHHhhc
Confidence 689999988887764 6788888877663
No 9
>4i1o_B LEPB; GAP, rabgap, hydrolase activator, RAB1B, LPG2490, GTPase-ACT proteins, hydrolysis, RAB1 hydrolase, GTP hydrolase; HET: GDP PEG; 2.70A {Legionella pneumophila subsp} PDB: 4i1m_A*
Probab=33.50 E-value=14 Score=26.17 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=21.1
Q ss_pred HHHHHHHh-cCCcccCCCCcCCCCccchHHHHHHHHHHH
Q 035311 25 SKLYHSIC-KNEIGTTPEQCAGFPEITQSCWIDLMRSLR 62 (68)
Q Consensus 25 ~~iY~sI~-~~ei~~~~~~~~~~~~~~~~~W~~l~~~~~ 62 (68)
+++|.||- ..|..++.++...|++ +--.|.+++..+.
T Consensus 1 ~~~yqsi~~~~p~~L~m~q~t~F~E-~in~Wa~iL~~~d 38 (302)
T 4i1o_B 1 EELYQSILELKPLTLLMTSSTSFSE-TINQWADILKTTD 38 (302)
T ss_dssp -----------CCSCCCTTCSSHHH-HHHHHHHHHHC--
T ss_pred CcHHHhHHhcCCceeecccccchHH-HHHHHHHHHhccc
Confidence 36899987 6788888888888877 5778999998765
No 10
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=33.19 E-value=15 Score=23.73 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=25.4
Q ss_pred HHHHHhcCCCCCC--CCCHHHHHHHHHHHhcCCcc
Q 035311 5 DFIRSNGHINGGN--DLPREFLSKLYHSICKNEIG 37 (68)
Q Consensus 5 ~FirnnrGin~G~--Dlp~e~L~~iY~sI~~~ei~ 37 (68)
.||--+||||-|+ -+|-+-|.++...+=-...+
T Consensus 6 ~yiaLLRGINVGG~nkv~MadLr~~l~~lGf~~V~ 40 (183)
T 2hiy_A 6 RYALLVRGINVGGKNKVVMAELRQELTNLGLEKVE 40 (183)
T ss_dssp EEEEECSSCSCC-CCCCCHHHHHHHHHHHTCEEEE
T ss_pred hhhhhccceecCCCCcccHHHHHHHHHHcCCccce
Confidence 3677799999995 59999999999987544433
No 11
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=32.95 E-value=10 Score=22.06 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=15.2
Q ss_pred CCCCCHHHHHHHHHHHhcCC
Q 035311 16 GNDLPREFLSKLYHSICKNE 35 (68)
Q Consensus 16 G~Dlp~e~L~~iY~sI~~~e 35 (68)
...||+++++.||..|-+..
T Consensus 67 ~~~l~~~~i~~if~~ii~~s 86 (101)
T 3ret_A 67 ENGLDAPFVEGLFAQIIHWY 86 (101)
T ss_dssp HTTSCHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHH
Confidence 35689999999998886543
No 12
>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str}
Probab=31.37 E-value=13 Score=23.70 Aligned_cols=30 Identities=17% Similarity=0.001 Sum_probs=22.6
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHhcCCc
Q 035311 7 IRSNGHINGGNDLPREFLSKLYHSICKNEI 36 (68)
Q Consensus 7 irnnrGin~G~Dlp~e~L~~iY~sI~~~ei 36 (68)
+...+..+.+..+++++++.||..|-+..+
T Consensus 41 L~~l~~~a~~~gL~~~~i~~ifr~Ii~~S~ 70 (156)
T 2gbb_A 41 INSAMAQAESLGLNGESIKPLMVAQINAAK 70 (156)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence 445555566779999999999999876544
No 13
>1wlm_A Protein CGI-38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.39.1.11
Probab=29.06 E-value=58 Score=20.69 Aligned_cols=34 Identities=6% Similarity=0.222 Sum_probs=29.3
Q ss_pred CChHHHHHHhc--CCCCCCCCCHHHHHHHHHHHhcC
Q 035311 1 MTEEDFIRSNG--HINGGNDLPREFLSKLYHSICKN 34 (68)
Q Consensus 1 Mt~e~Firnnr--Gin~G~Dlp~e~L~~iY~sI~~~ 34 (68)
|+-..|.+..| ||-+|+.|...-..=||..++.+
T Consensus 37 M~~~~f~Kl~kD~~lidgk~~T~tdvDiiF~KvK~k 72 (151)
T 1wlm_A 37 MNGKNWAKLCKDCKVADGKAVTGTDVDIVFSKVKAK 72 (151)
T ss_dssp EEHHHHHHHHHHTSCCCSSSSCHHHHHHHHHHHSCS
T ss_pred CCHHHHHHHHHHCCCCcCCCCChhhcceehheeccC
Confidence 66778999887 68889999999999999999844
No 14
>1yrx_A Hypothetical protein RSPH03001874; ferredoxin-like fold, flavin binding, photoreceptor, transcr; HET: FMN D9G; 2.30A {Rhodobacter sphaeroides 2} SCOP: d.58.10.2 PDB: 2bun_A*
Probab=28.26 E-value=41 Score=20.50 Aligned_cols=16 Identities=6% Similarity=0.169 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHhcCC
Q 035311 20 PREFLSKLYHSICKNE 35 (68)
Q Consensus 20 p~e~L~~iY~sI~~~e 35 (68)
|++-+..+|++|+.++
T Consensus 56 ~~~~V~~Ly~rI~~D~ 71 (121)
T 1yrx_A 56 RPAAVAEVMTHIQRDR 71 (121)
T ss_dssp CHHHHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHhcCC
Confidence 8899999999999876
No 15
>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A*
Probab=28.15 E-value=18 Score=23.21 Aligned_cols=30 Identities=3% Similarity=0.247 Sum_probs=21.5
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHhcCCc
Q 035311 7 IRSNGHINGGNDLPREFLSKLYHSICKNEI 36 (68)
Q Consensus 7 irnnrGin~G~Dlp~e~L~~iY~sI~~~ei 36 (68)
+.+.+..+....|++++++.||..|-+..+
T Consensus 44 L~r~~~~a~~~gL~~~~i~~ifr~Ii~~S~ 73 (166)
T 2fp1_A 44 LAKLGEDARSQHIDPDYVTRVFDDQIRATE 73 (166)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 344444555578999999999999876433
No 16
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=27.86 E-value=79 Score=20.69 Aligned_cols=47 Identities=21% Similarity=0.410 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHhcCCcccCCCCcC-----CCCccchHHHHHHHHHHHhh
Q 035311 18 DLPREFLSKLYHSICKNEIGTTPEQCA-----GFPEITQSCWIDLMRSLRKQ 64 (68)
Q Consensus 18 Dlp~e~L~~iY~sI~~~ei~~~~~~~~-----~~~~~~~~~W~~l~~~~~~~ 64 (68)
.++..++..|..+|....+-+....++ .++.+|..+-++|.+.++..
T Consensus 70 p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~ 121 (185)
T 1eh1_A 70 SWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQY 121 (185)
T ss_dssp CSSHHHHHHHHHHHSSSTTCCCEEEETTEEEEECCCCCTTHHHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999988876542 38889999999999887654
No 17
>2iyg_A APPA, antirepressor of PPSR, sensor of blue light; signal transduction; HET: FMN; 2.3A {Rhodobacter sphaeroides} PDB: 2iyi_A*
Probab=27.36 E-value=41 Score=20.61 Aligned_cols=16 Identities=6% Similarity=0.169 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHhcCC
Q 035311 20 PREFLSKLYHSICKNE 35 (68)
Q Consensus 20 p~e~L~~iY~sI~~~e 35 (68)
|++-+..+|++|+.++
T Consensus 68 ~~~~V~~Ly~rI~~D~ 83 (124)
T 2iyg_A 68 RPAAVAEVMTHIQRDR 83 (124)
T ss_dssp CHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHhcCC
Confidence 8899999999999876
No 18
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=26.12 E-value=1.1e+02 Score=20.06 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHhcCCcccCCCCcC-----CCCccchHHHHHHHHHHHhh
Q 035311 18 DLPREFLSKLYHSICKNEIGTTPEQCA-----GFPEITQSCWIDLMRSLRKQ 64 (68)
Q Consensus 18 Dlp~e~L~~iY~sI~~~ei~~~~~~~~-----~~~~~~~~~W~~l~~~~~~~ 64 (68)
.++..++..|..+|....+-+....++ .++.+|..+-++|.+.++..
T Consensus 69 p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~ 120 (185)
T 1dd5_A 69 PWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEI 120 (185)
T ss_dssp ESSTTHHHHHHHHHHHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ecCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467889999999999999988876542 38899999999999887654
No 19
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=26.02 E-value=42 Score=16.52 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHH
Q 035311 17 NDLPREFLSKLYHSI 31 (68)
Q Consensus 17 ~Dlp~e~L~~iY~sI 31 (68)
.+||.|.|..|+..+
T Consensus 10 ~~LP~eil~~I~~~L 24 (53)
T 1fs1_A 10 DSLPDELLLGIFSCL 24 (53)
T ss_dssp CSSCHHHHHHHHTTS
T ss_pred HHCCHHHHHHHHHcC
Confidence 579999999999765
No 20
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=25.49 E-value=1e+02 Score=20.09 Aligned_cols=47 Identities=19% Similarity=0.378 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHhcCCcccCCCCcC-----CCCccchHHHHHHHHHHHhh
Q 035311 18 DLPREFLSKLYHSICKNEIGTTPEQCA-----GFPEITQSCWIDLMRSLRKQ 64 (68)
Q Consensus 18 Dlp~e~L~~iY~sI~~~ei~~~~~~~~-----~~~~~~~~~W~~l~~~~~~~ 64 (68)
.++..++..|..+|....+-+....++ .++.+|..+-++|.+.++..
T Consensus 69 p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~ 120 (185)
T 1ise_A 69 VFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE 120 (185)
T ss_dssp ESSGGGHHHHHHHHHTTCTTCCCEESSSEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467889999999999999988876543 38899999999999887654
No 21
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=24.96 E-value=40 Score=22.38 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=25.5
Q ss_pred HHHHHHhcC--CCCCCCCCHHHHHHHHHHHhc-CCcccC
Q 035311 4 EDFIRSNGH--INGGNDLPREFLSKLYHSICK-NEIGTT 39 (68)
Q Consensus 4 e~FirnnrG--in~G~Dlp~e~L~~iY~sI~~-~ei~~~ 39 (68)
..|.+-..+ +.+|.|.|+.-+..|+..+.. ++|.+.
T Consensus 64 ~~F~~~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr 102 (212)
T 2iue_A 64 SQFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWR 102 (212)
T ss_dssp HHHHHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCC
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHHHhhhhcccC
Confidence 456665555 567789999999999999854 334443
No 22
>2jrf_A Tubulin polymerization-promoting protein family member 3; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=24.46 E-value=73 Score=21.00 Aligned_cols=34 Identities=6% Similarity=0.223 Sum_probs=29.2
Q ss_pred CChHHHHHHhc--CCCCCCCCCHHHHHHHHHHHhcC
Q 035311 1 MTEEDFIRSNG--HINGGNDLPREFLSKLYHSICKN 34 (68)
Q Consensus 1 Mt~e~Firnnr--Gin~G~Dlp~e~L~~iY~sI~~~ 34 (68)
|+-..|.+..| ||-+|+.|...-..=||..++.+
T Consensus 30 Md~~~F~KlcKD~~liDgk~~T~tdvDIiF~KvK~k 65 (184)
T 2jrf_A 30 MNGKNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGK 65 (184)
T ss_dssp EEHHHHHHHHHHTTCCCSSSSCHHHHHHHHHHHCCS
T ss_pred CcHHHHHHHHHHcCCccCCCCChhhcchhhheeccC
Confidence 67778999987 67889999999999999999843
No 23
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=24.07 E-value=9.1 Score=22.96 Aligned_cols=19 Identities=5% Similarity=0.242 Sum_probs=11.5
Q ss_pred CCCCCCHHHHHHHHHHHhc
Q 035311 15 GGNDLPREFLSKLYHSICK 33 (68)
Q Consensus 15 ~G~Dlp~e~L~~iY~sI~~ 33 (68)
.+..+|+++++.||..|-+
T Consensus 70 ~~~~l~~~~i~~if~~ii~ 88 (104)
T 2gtv_X 70 KEHNVDENIGIKIFQRLIE 88 (104)
T ss_dssp HHHTSCSHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHH
Confidence 3446666666666666643
No 24
>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7
Probab=24.03 E-value=49 Score=21.17 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHhhccCC
Q 035311 51 QSCWIDLMRSLRKQLHLL 68 (68)
Q Consensus 51 ~~~W~~l~~~~~~~~~~~ 68 (68)
.+.|.-|++|++.+-+||
T Consensus 23 ~QlW~GL~~kar~p~~Fv 40 (157)
T 2ffs_A 23 LQLWEGLVCRAREPQYFV 40 (157)
T ss_dssp HHHHHHHHHHHHCGGGTC
T ss_pred HHHHHHHHHHhcChhhcc
Confidence 789999999999998886
No 25
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=23.74 E-value=1.1e+02 Score=19.93 Aligned_cols=47 Identities=15% Similarity=0.343 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHhcCCcccCCCCcC-----CCCccchHHHHHHHHHHHhh
Q 035311 18 DLPREFLSKLYHSICKNEIGTTPEQCA-----GFPEITQSCWIDLMRSLRKQ 64 (68)
Q Consensus 18 Dlp~e~L~~iY~sI~~~ei~~~~~~~~-----~~~~~~~~~W~~l~~~~~~~ 64 (68)
.++..++..|..+|....+-+....++ .++.+|..+-++|.+.++..
T Consensus 69 p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~ 120 (185)
T 1wqg_A 69 PYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHK 120 (185)
T ss_dssp ESSGGGHHHHHHHHHHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHH
T ss_pred eCCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467889999999999999988876542 38899999999999887654
No 26
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=23.70 E-value=1.1e+02 Score=18.51 Aligned_cols=35 Identities=3% Similarity=-0.118 Sum_probs=27.4
Q ss_pred CChHHHHHHhcCCCC--CCCCCHHHHHHHHHHHhcCC
Q 035311 1 MTEEDFIRSNGHING--GNDLPREFLSKLYHSICKNE 35 (68)
Q Consensus 1 Mt~e~FirnnrGin~--G~Dlp~e~L~~iY~sI~~~e 35 (68)
|.+.+.++.-|-+.. .+.+|.+.|++|.+....-|
T Consensus 4 m~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~AP 40 (204)
T 2b67_A 4 MKFLELNKKRHATKHFTDKLVDPKDVRTAIEIATLAP 40 (204)
T ss_dssp CHHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHhhhhhhccCCCCCCHHHHHHHHHHHHhCc
Confidence 566778888887764 45699999999999886544
No 27
>2jqt_A H-NS/STPA-binding protein 2; CNU, YDGT, replication origin associated, ORIC, protein binding; NMR {Escherichia coli}
Probab=22.68 E-value=40 Score=19.25 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=21.5
Q ss_pred CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhc
Q 035311 1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICK 33 (68)
Q Consensus 1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~ 33 (68)
||+++|+--.|-++. .|-|+++|+..+.
T Consensus 1 Mtk~d~L~kfRkc~s-----~eTLEkv~e~~~y 28 (71)
T 2jqt_A 1 MTVQDYLLKFRKISS-----LESLEKLYDHLNY 28 (71)
T ss_dssp CCCCCTHHHHHHCCC-----SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCc-----HHHHHHHHHHhhc
Confidence 788888877776664 5788999987764
No 28
>3t49_A SCIN-B, fibrinogen-binding protein; secreted, virulence, immune system; HET: GOL; 1.45A {Staphylococcus aureus subsp} PDB: 3t4a_G
Probab=22.29 E-value=38 Score=19.39 Aligned_cols=12 Identities=33% Similarity=0.503 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHh
Q 035311 21 REFLSKLYHSIC 32 (68)
Q Consensus 21 ~e~L~~iY~sI~ 32 (68)
..-|+.||.+|.
T Consensus 57 K~~LE~IY~eI~ 68 (73)
T 3t49_A 57 KVALEKIYKEID 68 (73)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356899999985
No 29
>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} SCOP: d.90.1.0
Probab=21.86 E-value=1.2e+02 Score=18.96 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=28.8
Q ss_pred CChHHHHHHhcCCCC--CCCCCHHHHHHHHHHHhcCCc
Q 035311 1 MTEEDFIRSNGHING--GNDLPREFLSKLYHSICKNEI 36 (68)
Q Consensus 1 Mt~e~FirnnrGin~--G~Dlp~e~L~~iY~sI~~~ei 36 (68)
|.+.+.++.-|-+.. .+.+|.+.|++|.+....-|-
T Consensus 2 M~~~~~i~~RrS~R~f~~~~v~~e~l~~il~~a~~aPs 39 (209)
T 3of4_A 2 MYLEKLQQWRYATADFSGAHITDDVLDKLLNTTRLTAS 39 (209)
T ss_dssp CHHHHHHHHCCBCSSBCSCCCCHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHhhhHHhcCCCCCCHHHHHHHHHHHHHCcC
Confidence 677888888887765 467999999999999876553
No 30
>1x0p_A Hypothetical protein TLL0078; BLUF, FAD, structural genomics, electron transport; HET: FAD; 2.00A {Thermosynechococcus elongatus} SCOP: d.58.10.2
Probab=21.67 E-value=49 Score=20.49 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHhcCC
Q 035311 20 PREFLSKLYHSICKNE 35 (68)
Q Consensus 20 p~e~L~~iY~sI~~~e 35 (68)
|++-+..+|++|+.++
T Consensus 55 ~~~~V~~l~~rI~~D~ 70 (143)
T 1x0p_A 55 DRQKVSETYARILKDP 70 (143)
T ss_dssp EHHHHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHhcCC
Confidence 7889999999999876
No 31
>3gr3_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella henselae str}
Probab=21.24 E-value=1.6e+02 Score=18.39 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=28.4
Q ss_pred CChHHHHHHhcCCCC--CCCCCHHHHHHHHHHHhcCC
Q 035311 1 MTEEDFIRSNGHING--GNDLPREFLSKLYHSICKNE 35 (68)
Q Consensus 1 Mt~e~FirnnrGin~--G~Dlp~e~L~~iY~sI~~~e 35 (68)
|.+.+.+++-|-+.. .+.+|.+.|++|-+.-..-|
T Consensus 7 m~~~~~i~~RRSvR~f~~~pV~~e~l~~il~aA~~AP 43 (230)
T 3gr3_A 7 IDIFQSILSRKSIRAFTDQPVTQETIREILKLAARAP 43 (230)
T ss_dssp CBHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHhCeehhccCCCCCCHHHHHHHHHHHHhCc
Confidence 678889999988864 46799999999999886443
No 32
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=21.17 E-value=1e+02 Score=20.06 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHhcCCcccCCCCcC-----CCCccchHHHHHHHHHHHhh
Q 035311 18 DLPREFLSKLYHSICKNEIGTTPEQCA-----GFPEITQSCWIDLMRSLRKQ 64 (68)
Q Consensus 18 Dlp~e~L~~iY~sI~~~ei~~~~~~~~-----~~~~~~~~~W~~l~~~~~~~ 64 (68)
.++..++..|..+|....+-+....++ .++.+|..+-++|.+.++..
T Consensus 69 p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~ 120 (185)
T 1is1_A 69 VFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGE 120 (185)
T ss_dssp ESSTTTHHHHHHHHHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ecCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467788999999999999988876543 38899999999999887654
No 33
>2qff_A Hypothetical protein; complement, inhibitor, inflammation, bacterial, molecular BI hydrolase inhibitor; HET: MSE; 1.80A {Staphylococcus aureus subsp} PDB: 3l5n_M* 3l3o_M* 3nms_M* 3nsa_M* 3ohx_M*
Probab=21.11 E-value=41 Score=19.68 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHh
Q 035311 21 REFLSKLYHSIC 32 (68)
Q Consensus 21 ~e~L~~iY~sI~ 32 (68)
..-|+.||++|.
T Consensus 67 K~~LE~IY~eId 78 (82)
T 2qff_A 67 KYQLQKIYNEID 78 (82)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356899999985
No 34
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=20.47 E-value=52 Score=19.02 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHhcC
Q 035311 18 DLPREFLSKLYHSICKN 34 (68)
Q Consensus 18 Dlp~e~L~~iY~sI~~~ 34 (68)
+||..||.+|-+-|..+
T Consensus 53 ~Lp~~yldqI~~FI~~N 69 (80)
T 2k89_A 53 DLNPMFLDQVAKFIIDN 69 (80)
T ss_dssp TCCTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 49999999999999865
No 35
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=20.40 E-value=69 Score=18.52 Aligned_cols=20 Identities=15% Similarity=0.577 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHhcCCc
Q 035311 17 NDLPREFLSKLYHSICKNEI 36 (68)
Q Consensus 17 ~Dlp~e~L~~iY~sI~~~ei 36 (68)
..||+++++.||..|-+..+
T Consensus 66 ~~l~~~~i~~if~~ii~~s~ 85 (109)
T 1ecm_A 66 HHLDAHYITRLFQLIIEDSV 85 (109)
T ss_dssp HTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999965443
No 36
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}
Probab=20.39 E-value=1.6e+02 Score=18.01 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=29.0
Q ss_pred CChHHHHHHhcCCCC--CCCCCHHHHHHHHHHHhcCC
Q 035311 1 MTEEDFIRSNGHING--GNDLPREFLSKLYHSICKNE 35 (68)
Q Consensus 1 Mt~e~FirnnrGin~--G~Dlp~e~L~~iY~sI~~~e 35 (68)
|.+.+.+++-|-+.. .+.+|.+.|+.|.+.-..-|
T Consensus 2 M~~~~~i~~RrSiR~f~~~~v~~e~l~~il~aa~~AP 38 (219)
T 3eo8_A 2 MELQDTIFKRQSVRKFKNQDVSDEDILKMIKAAGAAP 38 (219)
T ss_dssp CBHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHHTSC
T ss_pred CchHHHHHhCeehhccCCCCCCHHHHHHHHHHHHhCC
Confidence 778889999888755 35799999999999988554
No 37
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=20.38 E-value=95 Score=15.46 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=16.8
Q ss_pred CCCCCCCCHHHHHHHHHHHh
Q 035311 13 INGGNDLPREFLSKLYHSIC 32 (68)
Q Consensus 13 in~G~Dlp~e~L~~iY~sI~ 32 (68)
-+.|.|-+.|-|..-|.+++
T Consensus 6 ~~PG~dA~~Eela~Y~~~Lr 25 (36)
T 2bf9_A 6 TYPGDDAPVEDLIRFYNDLQ 25 (36)
T ss_dssp CCCCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 36789999999999998875
No 38
>2hfn_A Synechocystis photoreceptor (SLR1694); beta sheet ferredoxin-like fold, flavin binding protein, electron transport; HET: FMN; 1.80A {Synechocystis SP} PDB: 2hfo_A* 3mzi_A*
Probab=20.30 E-value=54 Score=20.55 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHhcCC
Q 035311 20 PREFLSKLYHSICKNE 35 (68)
Q Consensus 20 p~e~L~~iY~sI~~~e 35 (68)
|++-+..+|++|+.++
T Consensus 58 ~~~~V~~l~~rI~~D~ 73 (153)
T 2hfn_A 58 ECEQVNETYHRIVQDE 73 (153)
T ss_dssp EHHHHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHhcCC
Confidence 7889999999999876
No 39
>2win_M Staphylococcal complement inhibitor; serine protease, immune response, innate immunity, zymogen, secreted, protease, glycation; HET: NDG NAG MAN BMA; 3.90A {Staphylococcus aureus}
Probab=20.10 E-value=44 Score=19.92 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhc
Q 035311 21 REFLSKLYHSICK 33 (68)
Q Consensus 21 ~e~L~~iY~sI~~ 33 (68)
..-|+.||++|..
T Consensus 74 K~~LEnIY~eIde 86 (92)
T 2win_M 74 KYQLQKIYNEIDE 86 (92)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3568999999863
Done!