BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035312
(68 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+GAGP GL+L LL K GI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGI 26
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 29.3 bits (64), Expect = 0.62, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 37 IVSNEAVVP-VLIVGAGPVGLVLSILLTKLG 66
I E + P ++I+GAGP GL ++ LT+LG
Sbjct: 2 IAMAELLTPKIVIIGAGPTGLGAAVRLTELG 32
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+G GPVGL ++ LL + GI
Sbjct: 9 VAIIGGGPVGLTMAKLLQQNGI 30
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
Length = 398
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+G GPVGL ++ LL + GI
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGI 50
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+G GPVGL ++ LL + GI
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGI 50
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
Length = 398
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+G GPVGL ++ LL + GI
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGI 50
>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43
Length = 421
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 44 VPVLIVGAGPVGLVLSILLTKLG 66
V VL++GAGP G V + L+ K G
Sbjct: 6 VDVLVIGAGPAGTVAASLVNKSG 28
>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With
A Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With
A Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
Length = 507
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 27 PCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI 67
P R L+D VP L++G+G G V ++ LT+ GI
Sbjct: 2 PSRTLADGDR-------VPALVIGSGYGGAVAALRLTQAGI 35
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 40 NEAVVPVLIVGAGPVGLVLSILLTK 64
+E+ VLIVGAGP GL+ + +L++
Sbjct: 5 SESYCDVLIVGAGPAGLMAARVLSE 29
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 40 NEAVVPVLIVGAGPVGLVLSILLTK 64
+E+ VLIVGAGP GL+ + +L++
Sbjct: 4 SESYCDVLIVGAGPAGLMAARVLSE 28
>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CD9|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CDA|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
pdb|2CDA|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
Length = 366
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
VL+VG GP+G++ ++L G+
Sbjct: 184 VLVVGTGPIGVLFTLLFRTYGL 205
>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDC|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
Length = 366
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
VL+VG GP+G++ ++L G+
Sbjct: 184 VLVVGTGPIGVLFTLLFRTYGL 205
>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase
pdb|3M6I|B Chain B, L-Arabinitol 4-Dehydrogenase
Length = 363
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 45 PVLIVGAGPVGLV 57
PVLI GAGP+GL+
Sbjct: 182 PVLICGAGPIGLI 194
>pdb|2GDR|A Chain A, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|B Chain B, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|C Chain C, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|D Chain D, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|E Chain E, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|F Chain F, Crystal Structure Of A Bacterial Glutathione Transferase
Length = 202
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 22 PYGYTPCRALSDSKTIVSNEAVV 44
P GY PC L D +T+ A+V
Sbjct: 48 PAGYVPCLQLDDGRTLTEGPAIV 70
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From
Streptomyces Sp. X-119-6
Length = 376
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 46 VLIVGAGPVGLVLSILLTKLG 66
+LIVGAG GLV LLT+ G
Sbjct: 47 ILIVGAGIAGLVAGDLLTRAG 67
>pdb|2DSA|A Chain A, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|B Chain B, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|C Chain C, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|D Chain D, Ternary Complex Of Bphk, A Bacterial Gst
Length = 203
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 22 PYGYTPCRALSDSKTIVSNEAVV 44
P GY PC L D +T+ A+V
Sbjct: 48 PAGYVPCLQLDDGRTLTEGPAIV 70
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+G GPVGL + LL + GI
Sbjct: 9 VAIIGGGPVGLTXAKLLQQNGI 30
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V I+G GPVGL + LL + GI
Sbjct: 30 VAIIGGGPVGLTXAKLLQQNGI 51
>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf
Whitefly
Length = 352
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 46 VLIVGAGPVGLVLSILLTKLGIF 68
VL++GAGP+GLV + G F
Sbjct: 172 VLVIGAGPIGLVSVLAAKAYGAF 194
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 37 IVSNEAVVP------VLIVGAGPVGLVLSILLTKLG 66
I S EA+ P +++VG G +GL L I KLG
Sbjct: 159 ISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLG 194
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V IVGAGP GL + L K G+
Sbjct: 8 VAIVGAGPSGLAAATALRKAGL 29
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V IVGAGP GL + L K G+
Sbjct: 8 VAIVGAGPSGLAAATALRKAGL 29
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V IVGAGP GL + L K G+
Sbjct: 8 VAIVGAGPSGLAAATALRKAGL 29
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 44 VPVLIVGAGPVGLVLSILL 62
V VLIVG GP GL L+ L
Sbjct: 33 VDVLIVGCGPAGLTLAAQL 51
>pdb|2AFR|A Chain A, The Crystal Structure Of Putative Precorrin Isomerase Cbic
In Cobalamin Biosynthesis
pdb|2AFV|A Chain A, The Crystal Structure Of Putative Precorrin Isomerase Cbic
In Cobalamin Biosynthesis
pdb|2AFV|B Chain B, The Crystal Structure Of Putative Precorrin Isomerase Cbic
In Cobalamin Biosynthesis
Length = 231
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 2 RIVAFTRRLNCFSRIKTFPYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLV 57
R + ++ N F+ + G P AL + + ++ E + P LIVG PVG V
Sbjct: 118 RAIESIQKANSFNLLNESIIVIGNAPT-ALLEIEKLIRQEGIKPALIVGV-PVGFV 171
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 40 NEAVVPVLIVGAGPVGLVLSILLTKLGI 67
N+ V VL+VGAG GL ++ L + G+
Sbjct: 2 NDHEVDVLVVGAGLGGLSTAMFLARQGV 29
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
V+++GAGP G V +I +LG+
Sbjct: 6 VVVIGAGPGGYVAAIRAAQLGL 27
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.145 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,871,956
Number of Sequences: 62578
Number of extensions: 54578
Number of successful extensions: 535
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 53
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)