Query 035312
Match_columns 68
No_of_seqs 167 out of 1532
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 10:53:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02985 squalene monooxygenas 98.6 8.9E-09 1.9E-13 78.0 1.1 59 3-67 9-67 (514)
2 PF01494 FAD_binding_3: FAD bi 98.5 6.9E-08 1.5E-12 65.9 3.2 25 43-67 1-25 (356)
3 PRK07364 2-octaprenyl-6-methox 98.4 3E-07 6.6E-12 65.8 4.8 26 42-67 17-42 (415)
4 COG0644 FixC Dehydrogenases (f 98.4 2.3E-07 5.1E-12 67.4 3.5 26 42-67 2-27 (396)
5 PRK09126 hypothetical protein; 98.4 3.3E-07 7.2E-12 65.2 3.8 27 42-68 2-28 (392)
6 PRK08013 oxidoreductase; Provi 98.4 4.2E-07 9E-12 65.7 3.8 26 42-67 2-27 (400)
7 COG0492 TrxB Thioredoxin reduc 98.4 4.2E-07 9.1E-12 65.6 3.7 26 42-67 2-27 (305)
8 TIGR02032 GG-red-SF geranylger 98.3 5E-07 1.1E-11 60.8 3.7 24 44-67 1-24 (295)
9 PRK08849 2-octaprenyl-3-methyl 98.3 5.4E-07 1.2E-11 64.7 3.9 25 43-67 3-27 (384)
10 PRK05732 2-octaprenyl-6-methox 98.3 5.2E-07 1.1E-11 64.0 3.7 26 42-67 2-30 (395)
11 TIGR02023 BchP-ChlP geranylger 98.3 5.2E-07 1.1E-11 64.9 3.7 24 44-67 1-24 (388)
12 PRK10157 putative oxidoreducta 98.3 6.6E-07 1.4E-11 65.9 3.9 26 42-67 4-29 (428)
13 PRK08850 2-octaprenyl-6-methox 98.3 6.7E-07 1.5E-11 64.5 3.9 26 42-67 3-28 (405)
14 PF01946 Thi4: Thi4 family; PD 98.3 4.9E-07 1.1E-11 64.0 3.1 27 41-67 15-41 (230)
15 PRK06184 hypothetical protein; 98.3 7E-07 1.5E-11 66.4 3.9 27 42-68 2-28 (502)
16 PRK10015 oxidoreductase; Provi 98.3 7.1E-07 1.5E-11 65.9 3.9 26 42-67 4-29 (429)
17 PRK08773 2-octaprenyl-3-methyl 98.3 7.1E-07 1.5E-11 63.9 3.6 26 42-67 5-30 (392)
18 PRK05714 2-octaprenyl-3-methyl 98.3 6.5E-07 1.4E-11 64.3 3.4 25 43-67 2-26 (405)
19 PRK07494 2-octaprenyl-6-methox 98.3 7.7E-07 1.7E-11 63.4 3.7 27 41-67 5-31 (388)
20 PRK07608 ubiquinone biosynthes 98.3 8.6E-07 1.9E-11 62.8 3.8 26 42-67 4-29 (388)
21 PRK08020 ubiF 2-octaprenyl-3-m 98.3 7.7E-07 1.7E-11 63.4 3.5 26 42-67 4-29 (391)
22 COG1635 THI4 Ribulose 1,5-bisp 98.3 6E-07 1.3E-11 64.3 3.0 27 41-67 28-54 (262)
23 PRK07045 putative monooxygenas 98.3 7.8E-07 1.7E-11 63.6 3.5 26 42-67 4-29 (388)
24 PRK06185 hypothetical protein; 98.3 1E-06 2.2E-11 63.1 4.0 26 42-67 5-30 (407)
25 COG0654 UbiH 2-polyprenyl-6-me 98.3 9.6E-07 2.1E-11 63.8 3.8 25 43-67 2-26 (387)
26 PRK04176 ribulose-1,5-biphosph 98.3 9.8E-07 2.1E-11 61.8 3.6 27 41-67 23-49 (257)
27 PLN00093 geranylgeranyl diphos 98.2 1.3E-06 2.9E-11 65.3 4.3 27 41-67 37-63 (450)
28 PRK08244 hypothetical protein; 98.2 1.1E-06 2.5E-11 65.1 3.9 25 43-67 2-26 (493)
29 TIGR01988 Ubi-OHases Ubiquinon 98.2 1.1E-06 2.3E-11 61.8 3.4 23 45-67 1-23 (385)
30 PRK07236 hypothetical protein; 98.2 1.5E-06 3.2E-11 62.4 3.9 28 41-68 4-31 (386)
31 TIGR00292 thiazole biosynthesi 98.2 1.6E-06 3.4E-11 60.9 3.8 27 41-67 19-45 (254)
32 PRK11259 solA N-methyltryptoph 98.2 1.6E-06 3.4E-11 61.1 3.8 26 42-67 2-27 (376)
33 TIGR03329 Phn_aa_oxid putative 98.2 2.6E-06 5.6E-11 63.0 5.1 25 41-65 22-46 (460)
34 PRK10262 thioredoxin reductase 98.2 2E-06 4.3E-11 60.3 4.2 27 41-67 4-30 (321)
35 PRK06126 hypothetical protein; 98.2 1.7E-06 3.6E-11 64.9 4.0 27 41-67 5-31 (545)
36 TIGR02360 pbenz_hydroxyl 4-hyd 98.2 1.7E-06 3.7E-11 62.6 3.8 26 43-68 2-27 (390)
37 PF01266 DAO: FAD dependent ox 98.2 1.7E-06 3.7E-11 59.0 3.5 23 45-67 1-23 (358)
38 TIGR01984 UbiH 2-polyprenyl-6- 98.2 1.4E-06 3.1E-11 61.6 3.2 23 45-67 1-24 (382)
39 PRK06847 hypothetical protein; 98.2 2E-06 4.3E-11 60.7 3.8 25 43-67 4-28 (375)
40 PRK08163 salicylate hydroxylas 98.2 2E-06 4.3E-11 61.3 3.8 26 43-68 4-29 (396)
41 COG0665 DadA Glycine/D-amino a 98.2 2E-06 4.4E-11 60.5 3.8 27 41-67 2-28 (387)
42 PRK08243 4-hydroxybenzoate 3-m 98.2 2E-06 4.4E-11 61.9 3.7 26 43-68 2-27 (392)
43 PRK08132 FAD-dependent oxidore 98.2 3.8E-06 8.3E-11 63.2 5.2 28 41-68 21-48 (547)
44 PRK07208 hypothetical protein; 98.1 2.5E-06 5.4E-11 62.6 4.0 26 42-67 3-28 (479)
45 PRK07190 hypothetical protein; 98.1 2.3E-06 5.1E-11 64.3 3.9 26 42-67 4-29 (487)
46 TIGR01377 soxA_mon sarcosine o 98.1 2.5E-06 5.3E-11 60.2 3.7 24 44-67 1-24 (380)
47 PRK07333 2-octaprenyl-6-methox 98.1 1.9E-06 4.2E-11 61.3 3.2 23 44-66 2-24 (403)
48 TIGR01292 TRX_reduct thioredox 98.1 2.9E-06 6.2E-11 57.5 3.8 24 44-67 1-24 (300)
49 PRK06753 hypothetical protein; 98.1 2.3E-06 5.1E-11 60.5 3.5 24 45-68 2-25 (373)
50 PRK06996 hypothetical protein; 98.1 2.4E-06 5.3E-11 61.7 3.6 27 41-67 9-35 (398)
51 PRK08010 pyridine nucleotide-d 98.1 2.8E-06 6.1E-11 62.2 3.9 26 42-67 2-27 (441)
52 PRK06834 hypothetical protein; 98.1 2.8E-06 6E-11 63.9 3.9 26 42-67 2-27 (488)
53 PRK06617 2-octaprenyl-6-methox 98.1 2.4E-06 5.2E-11 61.2 3.4 24 44-67 2-25 (374)
54 TIGR01989 COQ6 Ubiquinone bios 98.1 2.9E-06 6.2E-11 62.3 3.3 24 44-67 1-28 (437)
55 PLN02697 lycopene epsilon cycl 98.1 5.4E-06 1.2E-10 63.7 4.9 27 41-67 106-132 (529)
56 PLN02463 lycopene beta cyclase 98.1 5.9E-06 1.3E-10 62.1 5.0 27 41-67 26-52 (447)
57 PRK07251 pyridine nucleotide-d 98.1 4E-06 8.7E-11 61.3 3.9 26 42-67 2-27 (438)
58 PF03486 HI0933_like: HI0933-l 98.1 3.4E-06 7.4E-11 62.9 3.5 24 44-67 1-24 (409)
59 PRK06116 glutathione reductase 98.1 4.9E-06 1.1E-10 61.1 3.9 25 43-67 4-28 (450)
60 PF07992 Pyr_redox_2: Pyridine 98.1 5E-06 1.1E-10 53.6 3.5 23 45-67 1-23 (201)
61 PRK15317 alkyl hydroperoxide r 98.0 5E-06 1.1E-10 62.6 4.0 27 41-67 209-235 (517)
62 PRK11883 protoporphyrinogen ox 98.0 4E-06 8.7E-11 60.3 3.4 23 44-66 1-23 (451)
63 PLN02576 protoporphyrinogen ox 98.0 6.5E-06 1.4E-10 60.6 4.5 27 41-67 10-37 (496)
64 TIGR03364 HpnW_proposed FAD de 98.0 5E-06 1.1E-10 58.8 3.8 24 44-67 1-24 (365)
65 TIGR02028 ChlP geranylgeranyl 98.0 4.6E-06 1E-10 60.9 3.7 24 44-67 1-24 (398)
66 PRK07588 hypothetical protein; 98.0 4.6E-06 9.9E-11 59.7 3.6 24 44-67 1-24 (391)
67 PRK06183 mhpA 3-(3-hydroxyphen 98.0 5.5E-06 1.2E-10 62.3 4.0 27 41-67 8-34 (538)
68 PRK08294 phenol 2-monooxygenas 98.0 4.8E-06 1E-10 64.7 3.7 26 42-67 31-57 (634)
69 PRK07538 hypothetical protein; 98.0 5E-06 1.1E-10 60.2 3.6 24 45-68 2-25 (413)
70 PRK05249 soluble pyridine nucl 98.0 5.9E-06 1.3E-10 60.6 3.9 27 41-67 3-29 (461)
71 PRK07233 hypothetical protein; 98.0 5.7E-06 1.2E-10 59.0 3.7 23 45-67 1-23 (434)
72 PRK06475 salicylate hydroxylas 98.0 6.2E-06 1.3E-10 59.5 3.9 25 44-68 3-27 (400)
73 PRK06292 dihydrolipoamide dehy 98.0 6.1E-06 1.3E-10 60.5 3.9 26 42-67 2-27 (460)
74 TIGR01790 carotene-cycl lycope 98.0 5.5E-06 1.2E-10 59.0 3.5 23 45-67 1-23 (388)
75 TIGR03143 AhpF_homolog putativ 98.0 6.3E-06 1.4E-10 62.8 4.0 25 43-67 4-28 (555)
76 PRK06370 mercuric reductase; V 98.0 6.4E-06 1.4E-10 60.7 3.8 27 41-67 3-29 (463)
77 PRK06115 dihydrolipoamide dehy 98.0 6.6E-06 1.4E-10 61.1 3.9 26 42-67 2-27 (466)
78 TIGR01421 gluta_reduc_1 glutat 98.0 6.5E-06 1.4E-10 61.0 3.8 25 43-67 2-26 (450)
79 TIGR01424 gluta_reduc_2 glutat 98.0 6E-06 1.3E-10 60.9 3.6 25 43-67 2-26 (446)
80 TIGR03140 AhpF alkyl hydropero 98.0 7.1E-06 1.5E-10 61.8 4.0 27 41-67 210-236 (515)
81 COG1233 Phytoene dehydrogenase 98.0 6.3E-06 1.4E-10 62.0 3.6 26 42-67 2-27 (487)
82 PRK11445 putative oxidoreducta 98.0 6.8E-06 1.5E-10 58.7 3.3 22 44-65 2-23 (351)
83 COG2072 TrkA Predicted flavopr 98.0 8.5E-06 1.8E-10 61.0 3.9 28 41-68 6-33 (443)
84 PRK08274 tricarballylate dehyd 98.0 8.7E-06 1.9E-10 59.9 3.9 26 42-67 3-28 (466)
85 KOG0029 Amine oxidase [Seconda 98.0 8.8E-06 1.9E-10 62.3 4.0 28 41-68 13-40 (501)
86 TIGR01373 soxB sarcosine oxida 98.0 1.4E-05 3E-10 57.5 4.7 26 41-66 28-54 (407)
87 COG2081 Predicted flavoprotein 98.0 8E-06 1.7E-10 61.8 3.6 26 42-67 2-27 (408)
88 PRK06416 dihydrolipoamide dehy 98.0 9.6E-06 2.1E-10 59.6 3.9 26 42-67 3-28 (462)
89 PRK07121 hypothetical protein; 97.9 1.6E-05 3.4E-10 59.3 5.0 27 41-67 18-44 (492)
90 PLN02268 probable polyamine ox 97.9 9.2E-06 2E-10 59.0 3.7 24 44-67 1-24 (435)
91 TIGR01350 lipoamide_DH dihydro 97.9 9.5E-06 2.1E-10 59.4 3.7 24 44-67 2-25 (461)
92 PRK14694 putative mercuric red 97.9 1.1E-05 2.5E-10 59.7 4.0 27 41-67 4-30 (468)
93 PRK11728 hydroxyglutarate oxid 97.9 1E-05 2.3E-10 58.2 3.6 25 43-67 2-28 (393)
94 PRK05868 hypothetical protein; 97.9 1.1E-05 2.4E-10 58.2 3.7 24 44-67 2-25 (372)
95 PRK05976 dihydrolipoamide dehy 97.9 1.2E-05 2.6E-10 59.6 3.7 26 42-67 3-28 (472)
96 TIGR00562 proto_IX_ox protopor 97.9 1.2E-05 2.5E-10 58.5 3.7 22 44-65 3-24 (462)
97 TIGR02733 desat_CrtD C-3',4' d 97.9 1.2E-05 2.7E-10 59.5 3.7 24 44-67 2-25 (492)
98 PRK12409 D-amino acid dehydrog 97.9 1.3E-05 2.7E-10 57.7 3.5 24 44-67 2-25 (410)
99 PLN02172 flavin-containing mon 97.9 1.6E-05 3.4E-10 59.9 4.1 26 42-67 9-34 (461)
100 PLN02927 antheraxanthin epoxid 97.9 1.8E-05 3.9E-10 62.6 4.6 27 41-67 79-105 (668)
101 PRK07818 dihydrolipoamide dehy 97.9 1.5E-05 3.3E-10 58.9 3.9 25 43-67 4-28 (466)
102 PLN02661 Putative thiazole syn 97.9 9.9E-06 2.2E-10 60.2 2.9 26 42-67 91-117 (357)
103 PRK12779 putative bifunctional 97.9 1.3E-05 2.9E-10 65.0 3.9 26 42-67 305-330 (944)
104 PF00890 FAD_binding_2: FAD bi 97.9 1.5E-05 3.4E-10 57.3 3.7 23 45-67 1-23 (417)
105 KOG1298 Squalene monooxygenase 97.9 1.1E-05 2.4E-10 61.8 3.0 58 4-67 12-69 (509)
106 PTZ00367 squalene epoxidase; P 97.9 1.6E-05 3.6E-10 61.4 3.8 26 42-67 32-57 (567)
107 PRK05192 tRNA uridine 5-carbox 97.9 1.5E-05 3.2E-10 62.7 3.6 26 42-67 3-28 (618)
108 PF05834 Lycopene_cycl: Lycope 97.8 1.3E-05 2.9E-10 58.0 3.1 23 45-67 1-25 (374)
109 TIGR02053 MerA mercuric reduct 97.8 1.8E-05 3.8E-10 58.4 3.7 24 44-67 1-24 (463)
110 PRK12831 putative oxidoreducta 97.8 2E-05 4.4E-10 58.9 4.0 27 41-67 138-164 (464)
111 PRK13369 glycerol-3-phosphate 97.8 2E-05 4.4E-10 59.1 3.9 26 42-67 5-30 (502)
112 PRK07573 sdhA succinate dehydr 97.8 2.5E-05 5.4E-10 60.8 4.4 43 23-67 17-59 (640)
113 PLN02815 L-aspartate oxidase 97.8 2.6E-05 5.7E-10 60.4 4.4 26 41-66 27-52 (594)
114 PF12831 FAD_oxidored: FAD dep 97.8 1.7E-05 3.7E-10 58.5 3.3 23 45-67 1-23 (428)
115 PRK00711 D-amino acid dehydrog 97.8 1.8E-05 4E-10 56.6 3.3 23 45-67 2-24 (416)
116 PRK12416 protoporphyrinogen ox 97.8 1.8E-05 3.9E-10 58.0 3.2 22 44-65 2-23 (463)
117 PRK13748 putative mercuric red 97.8 2.4E-05 5.3E-10 58.7 4.0 26 42-67 97-122 (561)
118 TIGR03315 Se_ygfK putative sel 97.8 2.2E-05 4.7E-10 64.6 3.9 26 42-67 536-561 (1012)
119 PTZ00052 thioredoxin reductase 97.8 2.6E-05 5.6E-10 58.8 3.7 25 43-67 5-29 (499)
120 PRK06327 dihydrolipoamide dehy 97.8 2.5E-05 5.5E-10 58.1 3.6 26 42-67 3-28 (475)
121 PRK06481 fumarate reductase fl 97.8 2.9E-05 6.3E-10 58.5 4.0 27 41-67 59-85 (506)
122 PRK12266 glpD glycerol-3-phosp 97.8 3E-05 6.6E-10 58.5 3.9 26 42-67 5-30 (508)
123 PRK01747 mnmC bifunctional tRN 97.8 2.7E-05 5.9E-10 60.2 3.7 25 43-67 260-284 (662)
124 PRK06467 dihydrolipoamide dehy 97.8 3.2E-05 7E-10 57.6 3.9 26 42-67 3-28 (471)
125 TIGR03219 salicylate_mono sali 97.8 2.6E-05 5.7E-10 56.4 3.3 22 45-66 2-23 (414)
126 PRK11101 glpA sn-glycerol-3-ph 97.7 3.3E-05 7.1E-10 58.9 3.9 26 42-67 5-30 (546)
127 TIGR02731 phytoene_desat phyto 97.7 3.3E-05 7.1E-10 56.5 3.7 23 45-67 1-23 (453)
128 PRK12769 putative oxidoreducta 97.7 3E-05 6.6E-10 60.0 3.7 26 42-67 326-351 (654)
129 KOG3855 Monooxygenase involved 97.7 4.8E-05 1E-09 58.4 4.7 55 11-65 3-58 (481)
130 PRK05335 tRNA (uracil-5-)-meth 97.7 3.3E-05 7.1E-10 58.8 3.8 24 44-67 3-26 (436)
131 PLN02852 ferredoxin-NADP+ redu 97.7 5.4E-05 1.2E-09 57.9 4.7 27 41-67 24-52 (491)
132 PRK06567 putative bifunctional 97.7 3.8E-05 8.3E-10 63.4 4.0 27 41-67 381-407 (1028)
133 COG3349 Uncharacterized conser 97.7 3.3E-05 7.2E-10 59.5 3.5 25 44-68 1-25 (485)
134 PRK12842 putative succinate de 97.7 4.2E-05 9.2E-10 58.4 4.0 27 41-67 7-33 (574)
135 KOG1399 Flavin-containing mono 97.7 4E-05 8.7E-10 58.2 3.8 27 42-68 5-31 (448)
136 PRK05945 sdhA succinate dehydr 97.7 3.4E-05 7.3E-10 59.0 3.4 25 42-66 2-26 (575)
137 TIGR02730 carot_isom carotene 97.7 4.1E-05 8.8E-10 57.0 3.8 24 44-67 1-24 (493)
138 PRK12775 putative trifunctiona 97.7 3.9E-05 8.5E-10 62.6 3.8 26 42-67 429-454 (1006)
139 TIGR01372 soxA sarcosine oxida 97.7 4.4E-05 9.6E-10 61.9 3.9 26 42-67 162-187 (985)
140 PRK12837 3-ketosteroid-delta-1 97.7 4.8E-05 1E-09 57.4 3.9 26 41-67 5-30 (513)
141 PRK08641 sdhA succinate dehydr 97.7 4.6E-05 9.9E-10 58.7 3.8 26 42-67 2-27 (589)
142 PRK09078 sdhA succinate dehydr 97.7 4.6E-05 9.9E-10 58.8 3.8 26 42-67 11-36 (598)
143 TIGR01789 lycopene_cycl lycope 97.7 4.2E-05 9.1E-10 55.7 3.4 23 45-67 1-25 (370)
144 PRK12778 putative bifunctional 97.7 4.6E-05 9.9E-10 59.9 3.8 26 42-67 430-455 (752)
145 PTZ00383 malate:quinone oxidor 97.7 5.5E-05 1.2E-09 57.7 4.2 25 41-65 43-67 (497)
146 PRK07804 L-aspartate oxidase; 97.7 6.7E-05 1.5E-09 57.1 4.5 27 41-67 14-40 (541)
147 TIGR00551 nadB L-aspartate oxi 97.7 4.6E-05 1E-09 57.0 3.5 24 43-66 2-25 (488)
148 PRK06069 sdhA succinate dehydr 97.7 4.6E-05 1E-09 58.2 3.6 25 42-66 4-28 (577)
149 TIGR01813 flavo_cyto_c flavocy 97.6 4.9E-05 1.1E-09 55.5 3.5 22 45-66 1-22 (439)
150 PTZ00306 NADH-dependent fumara 97.6 0.00011 2.4E-09 60.6 5.9 57 9-67 375-433 (1167)
151 PLN02676 polyamine oxidase 97.6 6E-05 1.3E-09 56.9 4.0 26 42-67 25-50 (487)
152 PRK07057 sdhA succinate dehydr 97.6 5.6E-05 1.2E-09 58.2 3.9 26 42-67 11-36 (591)
153 PRK09853 putative selenate red 97.6 5.6E-05 1.2E-09 62.3 4.0 26 42-67 538-563 (1019)
154 PLN02507 glutathione reductase 97.6 5.8E-05 1.3E-09 57.0 3.8 27 41-67 23-49 (499)
155 PRK08401 L-aspartate oxidase; 97.6 5.4E-05 1.2E-09 56.5 3.5 24 44-67 2-25 (466)
156 TIGR01316 gltA glutamate synth 97.6 6.2E-05 1.3E-09 55.9 3.8 26 42-67 132-157 (449)
157 PTZ00139 Succinate dehydrogena 97.6 5.9E-05 1.3E-09 58.5 3.8 26 42-67 28-53 (617)
158 PRK07803 sdhA succinate dehydr 97.6 5.9E-05 1.3E-09 58.5 3.8 26 42-67 7-32 (626)
159 PRK12834 putative FAD-binding 97.6 6.5E-05 1.4E-09 57.0 3.8 26 42-67 3-28 (549)
160 PRK06452 sdhA succinate dehydr 97.6 7.2E-05 1.6E-09 57.3 4.0 26 42-67 4-29 (566)
161 PLN00128 Succinate dehydrogena 97.6 6.1E-05 1.3E-09 58.8 3.6 26 42-67 49-74 (635)
162 COG1232 HemY Protoporphyrinoge 97.6 5.4E-05 1.2E-09 57.6 3.2 22 45-66 2-23 (444)
163 PLN02464 glycerol-3-phosphate 97.6 7.7E-05 1.7E-09 58.1 4.0 26 42-67 70-95 (627)
164 PRK12835 3-ketosteroid-delta-1 97.6 8.3E-05 1.8E-09 57.3 4.1 27 41-67 9-35 (584)
165 PTZ00058 glutathione reductase 97.6 0.00011 2.3E-09 56.9 4.7 27 41-67 46-72 (561)
166 TIGR02734 crtI_fam phytoene de 97.6 5.5E-05 1.2E-09 56.0 3.0 22 46-67 1-22 (502)
167 PF01134 GIDA: Glucose inhibit 97.6 6.8E-05 1.5E-09 56.3 3.4 23 45-67 1-23 (392)
168 COG1231 Monoamine oxidase [Ami 97.6 6.9E-05 1.5E-09 57.4 3.5 27 41-67 5-31 (450)
169 COG3075 GlpB Anaerobic glycero 97.6 7.1E-05 1.5E-09 56.5 3.5 25 43-67 2-26 (421)
170 PRK14727 putative mercuric red 97.6 0.00011 2.4E-09 54.8 4.5 27 41-67 14-40 (479)
171 PRK11749 dihydropyrimidine deh 97.6 8.5E-05 1.8E-09 54.9 3.8 26 42-67 139-164 (457)
172 KOG2415 Electron transfer flav 97.6 5.6E-05 1.2E-09 58.8 2.9 25 41-65 74-98 (621)
173 TIGR00137 gid_trmFO tRNA:m(5)U 97.6 8.4E-05 1.8E-09 56.4 3.8 24 44-67 1-24 (433)
174 PRK09231 fumarate reductase fl 97.6 6.7E-05 1.4E-09 57.7 3.3 25 42-66 3-27 (582)
175 COG3380 Predicted NAD/FAD-depe 97.6 6.8E-05 1.5E-09 55.3 3.2 25 44-68 2-26 (331)
176 PRK12810 gltD glutamate syntha 97.6 8.8E-05 1.9E-09 55.3 3.8 26 42-67 142-167 (471)
177 PRK08958 sdhA succinate dehydr 97.6 8.7E-05 1.9E-09 57.2 3.8 26 42-67 6-31 (588)
178 PF00732 GMC_oxred_N: GMC oxid 97.6 5.4E-05 1.2E-09 52.1 2.5 23 44-66 1-23 (296)
179 PLN02568 polyamine oxidase 97.6 8.3E-05 1.8E-09 57.1 3.7 25 42-66 4-28 (539)
180 TIGR00031 UDP-GALP_mutase UDP- 97.6 8.6E-05 1.9E-09 55.1 3.7 24 44-67 2-25 (377)
181 PRK08275 putative oxidoreducta 97.6 7E-05 1.5E-09 57.0 3.3 25 41-65 7-31 (554)
182 PRK06854 adenylylsulfate reduc 97.6 7.5E-05 1.6E-09 57.8 3.4 24 42-65 10-33 (608)
183 PRK08626 fumarate reductase fl 97.6 8.6E-05 1.9E-09 58.1 3.8 26 42-67 4-29 (657)
184 TIGR01812 sdhA_frdA_Gneg succi 97.5 8.7E-05 1.9E-09 56.3 3.5 23 45-67 1-23 (566)
185 PRK09754 phenylpropionate diox 97.5 0.00011 2.4E-09 53.3 3.8 25 43-67 3-27 (396)
186 PRK05257 malate:quinone oxidor 97.5 8.1E-05 1.8E-09 56.5 3.2 25 41-65 3-27 (494)
187 PLN02612 phytoene desaturase 97.5 0.00015 3.2E-09 55.7 4.5 27 41-67 91-117 (567)
188 TIGR01320 mal_quin_oxido malat 97.5 0.0001 2.2E-09 55.8 3.5 22 44-65 1-22 (483)
189 TIGR01318 gltD_gamma_fam gluta 97.5 0.00012 2.6E-09 54.8 3.8 26 42-67 140-165 (467)
190 KOG2614 Kynurenine 3-monooxyge 97.5 0.00011 2.5E-09 55.8 3.7 25 43-67 2-26 (420)
191 PRK12844 3-ketosteroid-delta-1 97.5 0.00015 3.2E-09 55.5 4.2 27 41-67 4-30 (557)
192 PRK05329 anaerobic glycerol-3- 97.5 0.00014 2.9E-09 54.7 3.8 25 43-67 2-26 (422)
193 PRK07843 3-ketosteroid-delta-1 97.5 0.00016 3.5E-09 55.3 4.1 26 42-67 6-31 (557)
194 TIGR01438 TGR thioredoxin and 97.5 0.00014 3.1E-09 54.7 3.7 25 43-67 2-26 (484)
195 PLN02546 glutathione reductase 97.4 0.00015 3.2E-09 56.0 3.7 26 42-67 78-103 (558)
196 PRK12814 putative NADPH-depend 97.4 0.00016 3.4E-09 56.4 3.8 26 42-67 192-217 (652)
197 PRK07395 L-aspartate oxidase; 97.4 0.00015 3.3E-09 55.6 3.6 25 41-66 7-31 (553)
198 PRK06263 sdhA succinate dehydr 97.4 0.00017 3.8E-09 54.7 3.7 26 41-67 5-30 (543)
199 TIGR02732 zeta_caro_desat caro 97.4 0.00019 4.1E-09 53.8 3.7 23 45-67 1-23 (474)
200 PLN02529 lysine-specific histo 97.4 0.00028 6.1E-09 56.5 4.9 27 41-67 158-184 (738)
201 PRK12809 putative oxidoreducta 97.4 0.00019 4.2E-09 55.6 3.7 26 42-67 309-334 (639)
202 PRK09077 L-aspartate oxidase; 97.4 0.00019 4E-09 54.6 3.5 25 41-65 6-30 (536)
203 TIGR01176 fum_red_Fp fumarate 97.4 0.00016 3.4E-09 55.8 3.1 24 43-66 3-26 (580)
204 PRK13800 putative oxidoreducta 97.4 0.0002 4.3E-09 57.6 3.8 27 41-67 11-37 (897)
205 PRK12843 putative FAD-binding 97.4 0.00034 7.4E-09 53.7 4.8 28 40-67 13-40 (578)
206 PRK12771 putative glutamate sy 97.4 0.00022 4.7E-09 54.3 3.7 26 42-67 136-161 (564)
207 TIGR01423 trypano_reduc trypan 97.3 0.00023 5E-09 53.8 3.6 26 42-67 2-28 (486)
208 COG1249 Lpd Pyruvate/2-oxoglut 97.3 0.00026 5.5E-09 53.9 3.8 27 41-67 2-28 (454)
209 PRK13977 myosin-cross-reactive 97.3 0.00026 5.5E-09 55.6 3.8 25 42-66 21-45 (576)
210 PRK12839 hypothetical protein; 97.3 0.00031 6.8E-09 54.1 4.2 27 41-67 6-32 (572)
211 PRK08255 salicylyl-CoA 5-hydro 97.3 0.00021 4.6E-09 56.6 3.3 21 45-65 2-22 (765)
212 PRK13339 malate:quinone oxidor 97.3 0.00025 5.4E-09 54.3 3.6 25 41-65 4-28 (497)
213 PRK08071 L-aspartate oxidase; 97.3 0.00022 4.8E-09 54.0 3.2 22 43-64 3-24 (510)
214 PRK08205 sdhA succinate dehydr 97.3 0.00024 5.2E-09 54.6 3.4 24 42-65 4-27 (583)
215 COG3634 AhpF Alkyl hydroperoxi 97.3 0.00019 4.1E-09 54.9 2.7 27 41-67 209-235 (520)
216 COG0579 Predicted dehydrogenas 97.3 0.00026 5.7E-09 53.8 3.4 25 42-66 2-26 (429)
217 PTZ00363 rab-GDP dissociation 97.3 0.00025 5.4E-09 53.5 3.2 26 42-67 3-28 (443)
218 TIGR01317 GOGAT_sm_gam glutama 97.3 0.00033 7.2E-09 52.7 3.8 26 42-67 142-167 (485)
219 PTZ00153 lipoamide dehydrogena 97.3 0.00032 7E-09 55.3 3.9 25 43-67 116-140 (659)
220 COG1053 SdhA Succinate dehydro 97.3 0.00033 7.2E-09 54.4 3.8 27 41-67 4-30 (562)
221 PRK06175 L-aspartate oxidase; 97.2 0.0003 6.4E-09 52.3 3.3 24 42-66 3-26 (433)
222 PRK06134 putative FAD-binding 97.2 0.0004 8.7E-09 53.3 4.0 27 41-67 10-36 (581)
223 PLN02328 lysine-specific histo 97.2 0.00044 9.6E-09 55.9 4.2 27 41-67 236-262 (808)
224 PRK12770 putative glutamate sy 97.2 0.00049 1.1E-08 49.2 3.9 26 42-67 17-42 (352)
225 TIGR02061 aprA adenosine phosp 97.2 0.00038 8.3E-09 54.4 3.5 23 45-67 1-27 (614)
226 PF00743 FMO-like: Flavin-bind 97.2 0.00036 7.8E-09 53.7 3.2 24 44-67 2-25 (531)
227 PRK02106 choline dehydrogenase 97.1 0.00051 1.1E-08 52.2 3.7 26 42-67 4-30 (560)
228 KOG2820 FAD-dependent oxidored 97.1 0.00034 7.4E-09 52.8 2.7 27 41-67 5-31 (399)
229 TIGR02462 pyranose_ox pyranose 97.1 0.0005 1.1E-08 53.4 3.6 24 44-67 1-24 (544)
230 PRK12845 3-ketosteroid-delta-1 97.1 0.00061 1.3E-08 52.5 3.9 26 41-67 14-39 (564)
231 PLN02487 zeta-carotene desatur 97.1 0.00056 1.2E-08 53.2 3.7 25 43-67 75-99 (569)
232 PTZ00188 adrenodoxin reductase 97.1 0.00084 1.8E-08 52.1 4.4 26 42-67 38-64 (506)
233 PRK06912 acoL dihydrolipoamide 97.1 0.00063 1.4E-08 50.4 3.5 23 45-67 2-24 (458)
234 KOG0685 Flavin-containing amin 97.1 0.00064 1.4E-08 52.7 3.6 26 42-67 20-45 (498)
235 PF00070 Pyr_redox: Pyridine n 97.1 0.00092 2E-08 38.6 3.5 23 45-67 1-23 (80)
236 COG0493 GltD NADPH-dependent g 97.1 0.00059 1.3E-08 51.9 3.4 26 42-67 122-147 (457)
237 PRK07512 L-aspartate oxidase; 97.0 0.00044 9.5E-09 52.4 2.5 23 42-64 8-30 (513)
238 PRK09564 coenzyme A disulfide 97.0 0.00059 1.3E-08 49.7 3.1 22 45-66 2-23 (444)
239 PRK13984 putative oxidoreducta 97.0 0.00075 1.6E-08 51.6 3.7 26 42-67 282-307 (604)
240 COG1148 HdrA Heterodisulfide r 97.0 0.00067 1.5E-08 53.4 3.4 26 42-67 123-148 (622)
241 TIGR03378 glycerol3P_GlpB glyc 97.0 0.00082 1.8E-08 50.9 3.6 24 44-67 1-24 (419)
242 KOG1276 Protoporphyrinogen oxi 97.0 0.00071 1.5E-08 52.3 3.2 26 41-66 9-34 (491)
243 PRK04965 NADH:flavorubredoxin 96.9 0.0012 2.5E-08 47.5 3.5 23 44-66 3-25 (377)
244 TIGR00136 gidA glucose-inhibit 96.9 0.0011 2.3E-08 52.5 3.6 24 44-67 1-24 (617)
245 PF04820 Trp_halogenase: Trypt 96.9 0.00085 1.8E-08 50.4 2.7 22 45-66 1-22 (454)
246 PRK07845 flavoprotein disulfid 96.8 0.0014 3.1E-08 48.7 3.7 24 44-67 2-25 (466)
247 TIGR01811 sdhA_Bsu succinate d 96.8 0.0012 2.5E-08 51.3 3.0 22 46-67 1-22 (603)
248 PRK09897 hypothetical protein; 96.8 0.0014 2.9E-08 50.8 3.3 23 44-66 2-24 (534)
249 PLN02785 Protein HOTHEAD 96.7 0.0025 5.5E-08 49.5 4.2 25 41-65 53-77 (587)
250 COG2907 Predicted NAD/FAD-bind 96.7 0.0012 2.6E-08 50.3 2.3 24 42-65 7-30 (447)
251 COG3573 Predicted oxidoreducta 96.6 0.0021 4.6E-08 49.3 3.6 27 41-67 3-29 (552)
252 PRK13512 coenzyme A disulfide 96.6 0.0019 4.2E-08 47.6 3.1 21 45-65 3-23 (438)
253 COG0578 GlpA Glycerol-3-phosph 96.6 0.0025 5.5E-08 49.7 3.7 27 41-67 10-36 (532)
254 PLN03000 amine oxidase 96.6 0.0027 5.9E-08 52.0 3.9 26 42-67 183-208 (881)
255 TIGR01810 betA choline dehydro 96.5 0.0019 4E-08 48.8 2.7 22 45-66 1-22 (532)
256 COG0445 GidA Flavin-dependent 96.3 0.003 6.5E-08 50.1 2.5 26 42-67 3-28 (621)
257 PTZ00318 NADH dehydrogenase-li 96.3 0.004 8.6E-08 45.8 3.0 26 41-66 8-33 (424)
258 PLN02976 amine oxidase 96.3 0.0052 1.1E-07 53.2 4.0 26 42-67 692-717 (1713)
259 COG2303 BetA Choline dehydroge 96.2 0.0037 8E-08 48.0 2.8 27 41-67 5-31 (542)
260 KOG2853 Possible oxidoreductas 96.2 0.0051 1.1E-07 47.2 3.4 25 41-65 84-108 (509)
261 COG0562 Glf UDP-galactopyranos 96.1 0.0065 1.4E-07 45.7 3.5 24 44-67 2-25 (374)
262 KOG1335 Dihydrolipoamide dehyd 96.1 0.0049 1.1E-07 47.6 2.9 26 42-67 38-63 (506)
263 KOG2960 Protein involved in th 96.1 0.00024 5.2E-09 51.6 -4.0 23 43-65 76-98 (328)
264 COG0029 NadB Aspartate oxidase 96.1 0.0035 7.6E-08 48.9 2.0 21 45-65 9-29 (518)
265 COG0446 HcaD Uncharacterized N 96.0 0.0095 2.1E-07 41.6 3.6 25 43-67 136-160 (415)
266 TIGR03452 mycothione_red mycot 95.9 0.0074 1.6E-07 44.9 2.8 20 43-62 2-21 (452)
267 COG4529 Uncharacterized protei 95.8 0.009 2E-07 46.2 3.2 22 44-65 2-23 (474)
268 PF13434 K_oxygenase: L-lysine 95.8 0.0066 1.4E-07 44.2 2.2 23 43-65 2-24 (341)
269 PRK07846 mycothione reductase; 95.8 0.0096 2.1E-07 44.3 3.1 20 43-62 1-20 (451)
270 KOG2844 Dimethylglycine dehydr 95.7 0.018 4E-07 46.9 4.5 27 41-67 37-63 (856)
271 TIGR03169 Nterm_to_SelD pyridi 95.6 0.01 2.2E-07 42.1 2.6 21 45-65 1-21 (364)
272 KOG2311 NAD/FAD-utilizing prot 95.6 0.011 2.5E-07 46.8 3.0 27 41-67 26-52 (679)
273 KOG1800 Ferredoxin/adrenodoxin 95.6 0.012 2.7E-07 45.2 3.1 24 42-65 19-42 (468)
274 PRK01438 murD UDP-N-acetylmura 95.6 0.017 3.6E-07 43.0 3.6 25 43-67 16-40 (480)
275 PRK02705 murD UDP-N-acetylmura 95.5 0.016 3.5E-07 42.6 3.4 23 45-67 2-24 (459)
276 PF13738 Pyr_redox_3: Pyridine 95.3 0.017 3.6E-07 37.3 2.7 25 42-66 166-190 (203)
277 KOG0399 Glutamate synthase [Am 95.3 0.014 3.1E-07 50.3 2.8 26 42-67 1784-1809(2142)
278 KOG2665 Predicted FAD-dependen 95.1 0.016 3.4E-07 44.1 2.4 25 41-65 46-70 (453)
279 KOG2852 Possible oxidoreductas 95.0 0.0072 1.6E-07 45.3 0.3 26 42-67 9-34 (380)
280 PRK14989 nitrite reductase sub 95.0 0.029 6.2E-07 45.5 3.6 22 44-65 4-25 (847)
281 KOG4254 Phytoene desaturase [C 94.8 0.029 6.2E-07 44.1 3.1 27 41-67 12-38 (561)
282 PF01210 NAD_Gly3P_dh_N: NAD-d 94.7 0.045 9.9E-07 35.4 3.4 23 45-67 1-23 (157)
283 COG1206 Gid NAD(FAD)-utilizing 94.7 0.025 5.5E-07 43.1 2.5 25 43-67 3-27 (439)
284 PF03721 UDPG_MGDP_dh_N: UDP-g 94.6 0.033 7.2E-07 37.4 2.6 23 45-67 2-24 (185)
285 PF02558 ApbA: Ketopantoate re 94.6 0.063 1.4E-06 33.6 3.7 22 46-67 1-22 (151)
286 TIGR02374 nitri_red_nirB nitri 94.5 0.034 7.3E-07 44.5 2.8 21 46-66 1-21 (785)
287 PRK04965 NADH:flavorubredoxin 94.4 0.052 1.1E-06 39.0 3.5 25 43-67 141-165 (377)
288 COG1252 Ndh NADH dehydrogenase 94.3 0.049 1.1E-06 41.3 3.3 24 42-65 2-25 (405)
289 PRK09754 phenylpropionate diox 94.3 0.065 1.4E-06 38.9 3.7 25 43-67 144-168 (396)
290 PRK14106 murD UDP-N-acetylmura 94.2 0.064 1.4E-06 39.3 3.6 26 42-67 4-29 (450)
291 KOG4716 Thioredoxin reductase 94.2 0.041 8.8E-07 42.4 2.6 27 41-67 17-43 (503)
292 PRK05976 dihydrolipoamide dehy 94.2 0.062 1.3E-06 39.9 3.5 25 43-67 180-204 (472)
293 PRK07251 pyridine nucleotide-d 94.1 0.067 1.5E-06 39.2 3.6 25 43-67 157-181 (438)
294 TIGR03385 CoA_CoA_reduc CoA-di 94.0 0.075 1.6E-06 38.7 3.6 25 43-67 137-161 (427)
295 PF06039 Mqo: Malate:quinone o 94.0 0.058 1.3E-06 42.0 3.2 24 42-65 2-25 (488)
296 KOG0404 Thioredoxin reductase 94.0 0.055 1.2E-06 39.7 2.8 24 43-66 8-31 (322)
297 TIGR01350 lipoamide_DH dihydro 94.0 0.078 1.7E-06 38.9 3.6 25 43-67 170-194 (461)
298 PF01488 Shikimate_DH: Shikima 93.8 0.12 2.5E-06 32.8 3.9 26 42-67 11-36 (135)
299 KOG2755 Oxidoreductase [Genera 93.8 0.036 7.9E-07 41.1 1.6 21 45-65 1-21 (334)
300 KOG3923 D-aspartate oxidase [A 93.7 0.046 1E-06 40.8 2.1 24 42-65 2-25 (342)
301 PRK06912 acoL dihydrolipoamide 93.6 0.1 2.2E-06 38.7 3.7 25 43-67 170-194 (458)
302 PF00899 ThiF: ThiF family; I 93.6 0.089 1.9E-06 32.9 2.9 25 43-67 2-26 (135)
303 TIGR02053 MerA mercuric reduct 93.5 0.1 2.2E-06 38.5 3.7 25 43-67 166-190 (463)
304 KOG1238 Glucose dehydrogenase/ 93.4 0.08 1.7E-06 42.3 3.1 25 41-65 55-79 (623)
305 PRK06416 dihydrolipoamide dehy 93.4 0.11 2.3E-06 38.3 3.6 25 43-67 172-196 (462)
306 PRK12921 2-dehydropantoate 2-r 93.3 0.12 2.5E-06 35.8 3.5 23 45-67 2-24 (305)
307 PF02737 3HCDH_N: 3-hydroxyacy 93.2 0.13 2.8E-06 34.3 3.4 23 45-67 1-23 (180)
308 PRK06292 dihydrolipoamide dehy 93.1 0.14 3E-06 37.7 3.8 26 42-67 168-193 (460)
309 PRK09564 coenzyme A disulfide 93.0 0.14 3E-06 37.4 3.6 25 43-67 149-173 (444)
310 PRK15116 sulfur acceptor prote 93.0 0.15 3.3E-06 36.5 3.8 26 42-67 29-54 (268)
311 PRK06370 mercuric reductase; V 93.0 0.13 2.8E-06 38.0 3.6 25 43-67 171-195 (463)
312 cd05292 LDH_2 A subgroup of L- 93.0 0.13 2.8E-06 36.9 3.4 23 45-67 2-24 (308)
313 PRK05249 soluble pyridine nucl 93.0 0.14 3E-06 37.7 3.6 25 43-67 175-199 (461)
314 PF00056 Ldh_1_N: lactate/mala 92.9 0.17 3.7E-06 32.5 3.5 23 45-67 2-25 (141)
315 PRK07846 mycothione reductase; 92.8 0.15 3.2E-06 38.1 3.6 25 43-67 166-190 (451)
316 TIGR02354 thiF_fam2 thiamine b 92.8 0.18 3.8E-06 34.3 3.7 26 42-67 20-45 (200)
317 PRK13512 coenzyme A disulfide 92.8 0.14 3.1E-06 37.8 3.5 25 43-67 148-172 (438)
318 TIGR01292 TRX_reduct thioredox 92.8 0.15 3.2E-06 34.5 3.3 24 43-66 141-164 (300)
319 PRK07818 dihydrolipoamide dehy 92.7 0.15 3.2E-06 37.9 3.4 25 43-67 172-196 (466)
320 PRK12770 putative glutamate sy 92.6 0.17 3.6E-06 36.2 3.6 25 43-67 172-196 (352)
321 PRK14694 putative mercuric red 92.6 0.16 3.5E-06 37.7 3.6 25 43-67 178-202 (468)
322 PRK06115 dihydrolipoamide dehy 92.6 0.18 4E-06 37.6 3.9 25 43-67 174-198 (466)
323 PRK06467 dihydrolipoamide dehy 92.5 0.17 3.7E-06 37.8 3.7 25 43-67 174-198 (471)
324 COG1063 Tdh Threonine dehydrog 92.5 0.15 3.3E-06 36.9 3.3 23 45-67 171-193 (350)
325 PRK06249 2-dehydropantoate 2-r 92.4 0.21 4.5E-06 35.4 3.8 25 43-67 5-29 (313)
326 TIGR01421 gluta_reduc_1 glutat 92.4 0.19 4.1E-06 37.4 3.7 25 43-67 166-190 (450)
327 PRK13748 putative mercuric red 92.3 0.2 4.2E-06 37.9 3.8 25 43-67 270-294 (561)
328 COG1252 Ndh NADH dehydrogenase 92.3 0.12 2.6E-06 39.2 2.6 21 44-64 156-176 (405)
329 PRK05690 molybdopterin biosynt 92.2 0.22 4.7E-06 34.8 3.6 26 42-67 31-56 (245)
330 PRK06129 3-hydroxyacyl-CoA deh 92.2 0.19 4.1E-06 35.6 3.3 23 45-67 4-26 (308)
331 TIGR02374 nitri_red_nirB nitri 92.1 0.18 4E-06 40.3 3.6 25 43-67 140-164 (785)
332 PRK06116 glutathione reductase 92.1 0.22 4.8E-06 36.6 3.7 25 43-67 167-191 (450)
333 cd05293 LDH_1 A subgroup of L- 92.1 0.22 4.8E-06 36.0 3.7 25 43-67 3-27 (312)
334 PF01262 AlaDh_PNT_C: Alanine 92.1 0.23 5.1E-06 32.4 3.5 26 42-67 19-44 (168)
335 PRK09424 pntA NAD(P) transhydr 92.0 0.3 6.4E-06 38.0 4.5 25 42-66 164-188 (509)
336 TIGR03140 AhpF alkyl hydropero 92.0 0.18 4E-06 38.1 3.3 24 43-66 352-375 (515)
337 TIGR02355 moeB molybdopterin s 92.0 0.24 5.3E-06 34.5 3.7 26 42-67 23-48 (240)
338 KOG0042 Glycerol-3-phosphate d 92.0 0.032 6.9E-07 44.7 -0.8 26 42-67 66-91 (680)
339 TIGR03452 mycothione_red mycot 92.0 0.23 4.9E-06 37.0 3.7 25 43-67 169-193 (452)
340 cd00757 ThiF_MoeB_HesA_family 92.0 0.26 5.5E-06 33.7 3.7 26 42-67 20-45 (228)
341 TIGR01470 cysG_Nterm siroheme 92.0 0.24 5.2E-06 33.8 3.6 26 42-67 8-33 (205)
342 PRK08293 3-hydroxybutyryl-CoA 92.0 0.22 4.9E-06 34.8 3.5 24 44-67 4-27 (287)
343 PF06100 Strep_67kDa_ant: Stre 91.9 0.16 3.4E-06 39.8 2.8 24 43-66 2-25 (500)
344 cd01080 NAD_bind_m-THF_DH_Cycl 91.8 0.24 5.3E-06 33.0 3.4 27 41-67 42-69 (168)
345 cd05290 LDH_3 A subgroup of L- 91.8 0.25 5.4E-06 35.7 3.7 23 45-67 1-23 (307)
346 COG0569 TrkA K+ transport syst 91.8 0.23 5.1E-06 34.2 3.4 23 45-67 2-24 (225)
347 TIGR01316 gltA glutamate synth 91.8 0.24 5.1E-06 37.0 3.6 25 43-67 272-296 (449)
348 PRK12831 putative oxidoreducta 91.8 0.24 5.1E-06 37.3 3.7 26 42-67 280-305 (464)
349 PRK08644 thiamine biosynthesis 91.7 0.29 6.4E-06 33.5 3.8 26 42-67 27-52 (212)
350 PRK12549 shikimate 5-dehydroge 91.7 0.11 2.4E-06 36.9 1.7 26 42-67 126-151 (284)
351 PRK03369 murD UDP-N-acetylmura 91.6 0.25 5.4E-06 37.4 3.6 25 43-67 12-36 (488)
352 PTZ00052 thioredoxin reductase 91.6 0.25 5.5E-06 37.4 3.7 25 43-67 182-206 (499)
353 TIGR02356 adenyl_thiF thiazole 91.6 0.32 6.9E-06 32.9 3.8 26 42-67 20-45 (202)
354 PRK12475 thiamine/molybdopteri 91.6 0.27 5.9E-06 36.0 3.8 26 42-67 23-48 (338)
355 PRK00066 ldh L-lactate dehydro 91.6 0.3 6.5E-06 35.3 3.9 26 42-67 5-30 (315)
356 PRK07530 3-hydroxybutyryl-CoA 91.6 0.29 6.2E-06 34.3 3.7 24 44-67 5-28 (292)
357 TIGR01763 MalateDH_bact malate 91.6 0.26 5.6E-06 35.4 3.5 24 44-67 2-25 (305)
358 PRK06327 dihydrolipoamide dehy 91.6 0.28 6E-06 36.7 3.8 25 43-67 183-207 (475)
359 TIGR01424 gluta_reduc_2 glutat 91.5 0.26 5.5E-06 36.5 3.6 25 43-67 166-190 (446)
360 PRK09260 3-hydroxybutyryl-CoA 91.5 0.27 5.9E-06 34.4 3.5 23 45-67 3-25 (288)
361 PRK15317 alkyl hydroperoxide r 91.5 0.24 5.2E-06 37.5 3.5 24 43-66 351-374 (517)
362 PRK06522 2-dehydropantoate 2-r 91.5 0.26 5.6E-06 34.0 3.4 23 45-67 2-24 (304)
363 TIGR03169 Nterm_to_SelD pyridi 91.5 0.24 5.2E-06 35.1 3.3 22 43-64 145-166 (364)
364 TIGR00518 alaDH alanine dehydr 91.5 0.28 6E-06 36.2 3.7 26 42-67 166-191 (370)
365 TIGR01438 TGR thioredoxin and 91.5 0.27 5.8E-06 37.2 3.6 25 43-67 180-204 (484)
366 PF13241 NAD_binding_7: Putati 91.5 0.13 2.8E-06 31.3 1.6 25 42-66 6-30 (103)
367 PRK14727 putative mercuric red 91.4 0.27 5.9E-06 36.8 3.6 25 43-67 188-212 (479)
368 PRK10262 thioredoxin reductase 91.3 0.26 5.7E-06 34.5 3.3 25 43-67 146-170 (321)
369 PRK08229 2-dehydropantoate 2-r 91.3 0.29 6.2E-06 34.6 3.5 23 45-67 4-26 (341)
370 PRK08328 hypothetical protein; 91.3 0.34 7.3E-06 33.5 3.7 26 42-67 26-51 (231)
371 PRK05808 3-hydroxybutyryl-CoA 91.3 0.29 6.3E-06 34.1 3.4 24 44-67 4-27 (282)
372 PRK12810 gltD glutamate syntha 91.2 0.28 6E-06 36.7 3.5 24 43-66 281-304 (471)
373 cd05291 HicDH_like L-2-hydroxy 91.1 0.31 6.8E-06 34.7 3.6 23 45-67 2-24 (306)
374 TIGR03143 AhpF_homolog putativ 91.0 0.28 6.1E-06 37.6 3.4 25 43-67 143-167 (555)
375 PRK07688 thiamine/molybdopteri 90.9 0.36 7.7E-06 35.4 3.8 26 42-67 23-48 (339)
376 PRK05708 2-dehydropantoate 2-r 90.9 0.34 7.4E-06 34.5 3.6 24 44-67 3-26 (305)
377 PRK06719 precorrin-2 dehydroge 90.9 0.39 8.5E-06 31.5 3.6 26 42-67 12-37 (157)
378 PRK11749 dihydropyrimidine deh 90.9 0.33 7.1E-06 36.0 3.6 26 42-67 272-297 (457)
379 PRK06035 3-hydroxyacyl-CoA deh 90.9 0.33 7.1E-06 34.0 3.4 24 44-67 4-27 (291)
380 PRK02472 murD UDP-N-acetylmura 90.8 0.31 6.7E-06 35.7 3.4 25 43-67 5-29 (447)
381 PRK14989 nitrite reductase sub 90.8 0.3 6.5E-06 39.8 3.5 25 43-67 145-169 (847)
382 PRK08010 pyridine nucleotide-d 90.7 0.38 8.1E-06 35.3 3.7 25 43-67 158-182 (441)
383 PRK07845 flavoprotein disulfid 90.7 0.34 7.4E-06 36.1 3.6 25 43-67 177-201 (466)
384 cd05311 NAD_bind_2_malic_enz N 90.5 0.39 8.5E-06 33.1 3.5 26 42-67 24-49 (226)
385 cd01487 E1_ThiF_like E1_ThiF_l 90.5 0.44 9.5E-06 31.6 3.6 23 45-67 1-23 (174)
386 cd01483 E1_enzyme_family Super 90.5 0.49 1.1E-05 29.7 3.7 23 45-67 1-23 (143)
387 cd00755 YgdL_like Family of ac 90.5 0.44 9.5E-06 33.3 3.7 26 42-67 10-35 (231)
388 PRK11064 wecC UDP-N-acetyl-D-m 90.4 0.33 7.2E-06 36.2 3.3 24 44-67 4-27 (415)
389 PTZ00318 NADH dehydrogenase-li 90.4 0.32 7E-06 35.8 3.2 21 44-64 174-194 (424)
390 cd01492 Aos1_SUMO Ubiquitin ac 90.4 0.43 9.3E-06 32.3 3.6 26 42-67 20-45 (197)
391 PRK01710 murD UDP-N-acetylmura 90.3 0.38 8.2E-06 35.9 3.5 25 43-67 14-38 (458)
392 PF13434 K_oxygenase: L-lysine 90.3 0.27 5.8E-06 35.9 2.6 26 41-66 188-213 (341)
393 PF00996 GDI: GDP dissociation 90.2 0.39 8.5E-06 36.7 3.5 27 41-67 2-28 (438)
394 COG3634 AhpF Alkyl hydroperoxi 90.2 0.24 5.1E-06 38.4 2.3 22 42-63 353-374 (520)
395 cd00401 AdoHcyase S-adenosyl-L 90.1 0.42 9E-06 36.3 3.6 26 42-67 201-226 (413)
396 TIGR01759 MalateDH-SF1 malate 90.1 0.42 9.1E-06 34.9 3.5 26 43-68 3-29 (323)
397 PRK08223 hypothetical protein; 90.0 0.46 1E-05 34.6 3.6 26 42-67 26-51 (287)
398 PLN02507 glutathione reductase 89.9 0.44 9.4E-06 36.2 3.6 25 43-67 203-227 (499)
399 PRK06130 3-hydroxybutyryl-CoA 89.9 0.46 1E-05 33.4 3.5 24 44-67 5-28 (311)
400 PRK05600 thiamine biosynthesis 89.8 0.51 1.1E-05 35.0 3.8 26 42-67 40-65 (370)
401 PRK06223 malate dehydrogenase; 89.8 0.46 1E-05 33.5 3.4 24 44-67 3-26 (307)
402 cd01338 MDH_choloroplast_like 89.7 0.43 9.3E-06 34.7 3.3 25 44-68 3-28 (322)
403 PRK04308 murD UDP-N-acetylmura 89.7 0.49 1.1E-05 34.9 3.6 25 43-67 5-29 (445)
404 PRK06718 precorrin-2 dehydroge 89.6 0.54 1.2E-05 31.9 3.6 26 42-67 9-34 (202)
405 cd01485 E1-1_like Ubiquitin ac 89.6 0.56 1.2E-05 31.7 3.6 26 42-67 18-43 (198)
406 TIGR03026 NDP-sugDHase nucleot 89.4 0.39 8.5E-06 35.4 3.0 23 45-67 2-24 (411)
407 KOG2404 Fumarate reductase, fl 89.4 0.33 7.2E-06 37.3 2.6 23 44-66 10-32 (477)
408 PRK12778 putative bifunctional 89.4 0.48 1E-05 37.6 3.6 25 43-67 570-594 (752)
409 PTZ00117 malate dehydrogenase; 89.3 0.55 1.2E-05 33.9 3.6 26 42-67 4-29 (319)
410 PRK00141 murD UDP-N-acetylmura 89.3 0.53 1.2E-05 35.4 3.6 25 43-67 15-39 (473)
411 PRK13984 putative oxidoreducta 89.3 0.46 1E-05 36.5 3.3 24 43-66 418-441 (604)
412 PTZ00058 glutathione reductase 89.1 0.52 1.1E-05 36.7 3.5 25 43-67 237-261 (561)
413 KOG2495 NADH-dehydrogenase (ub 89.1 0.15 3.2E-06 39.8 0.5 21 44-64 219-239 (491)
414 PRK05597 molybdopterin biosynt 89.1 0.57 1.2E-05 34.4 3.6 26 42-67 27-52 (355)
415 COG2509 Uncharacterized FAD-de 89.0 0.38 8.2E-06 37.6 2.7 24 41-64 16-39 (486)
416 PRK07819 3-hydroxybutyryl-CoA 88.9 0.54 1.2E-05 33.3 3.3 24 44-67 6-29 (286)
417 PLN02353 probable UDP-glucose 88.9 0.48 1E-05 36.3 3.2 22 45-66 3-24 (473)
418 PRK08762 molybdopterin biosynt 88.8 0.62 1.4E-05 34.2 3.6 26 42-67 134-159 (376)
419 PLN02602 lactate dehydrogenase 88.7 0.62 1.4E-05 34.4 3.6 24 44-67 38-61 (350)
420 PRK00683 murD UDP-N-acetylmura 88.7 0.52 1.1E-05 34.7 3.2 24 44-67 4-27 (418)
421 PLN02546 glutathione reductase 88.5 0.6 1.3E-05 36.3 3.5 25 43-67 252-276 (558)
422 PRK14620 NAD(P)H-dependent gly 88.5 0.61 1.3E-05 33.0 3.3 23 45-67 2-24 (326)
423 COG1249 Lpd Pyruvate/2-oxoglut 88.4 0.67 1.4E-05 35.5 3.6 26 42-67 172-197 (454)
424 cd05191 NAD_bind_amino_acid_DH 88.4 0.88 1.9E-05 26.5 3.5 25 42-66 22-46 (86)
425 PRK07066 3-hydroxybutyryl-CoA 88.3 0.65 1.4E-05 34.0 3.5 24 44-67 8-31 (321)
426 PRK00045 hemA glutamyl-tRNA re 88.3 0.65 1.4E-05 34.7 3.5 26 42-67 181-206 (423)
427 COG1004 Ugd Predicted UDP-gluc 88.3 0.57 1.2E-05 36.0 3.2 24 45-68 2-25 (414)
428 PRK04690 murD UDP-N-acetylmura 88.1 0.62 1.3E-05 35.1 3.3 25 43-67 8-32 (468)
429 PTZ00082 L-lactate dehydrogena 88.0 0.76 1.7E-05 33.3 3.6 24 44-67 7-30 (321)
430 PRK00094 gpsA NAD(P)H-dependen 88.0 0.75 1.6E-05 32.0 3.4 23 45-67 3-25 (325)
431 PRK02006 murD UDP-N-acetylmura 87.9 0.64 1.4E-05 35.0 3.3 25 43-67 7-31 (498)
432 cd00300 LDH_like L-lactate deh 87.9 0.62 1.3E-05 33.2 3.1 22 46-67 1-22 (300)
433 PRK07502 cyclohexadienyl dehyd 87.9 0.75 1.6E-05 32.4 3.5 24 44-67 7-30 (307)
434 TIGR01757 Malate-DH_plant mala 87.9 0.78 1.7E-05 34.6 3.7 27 42-68 43-70 (387)
435 TIGR01035 hemA glutamyl-tRNA r 87.8 0.77 1.7E-05 34.3 3.6 26 42-67 179-204 (417)
436 cd05294 LDH-like_MDH_nadp A la 87.8 0.75 1.6E-05 33.0 3.4 23 45-67 2-25 (309)
437 PLN02172 flavin-containing mon 87.8 0.51 1.1E-05 35.7 2.7 25 42-66 203-227 (461)
438 TIGR00507 aroE shikimate 5-deh 87.7 0.34 7.5E-06 33.8 1.6 25 43-67 117-141 (270)
439 PTZ00153 lipoamide dehydrogena 87.7 0.75 1.6E-05 36.7 3.7 25 43-67 312-336 (659)
440 TIGR01202 bchC 2-desacetyl-2-h 87.7 0.85 1.8E-05 31.9 3.6 25 43-67 145-169 (308)
441 TIGR01772 MDH_euk_gproteo mala 87.6 0.81 1.8E-05 33.3 3.6 23 45-67 1-24 (312)
442 PRK03803 murD UDP-N-acetylmura 87.5 0.69 1.5E-05 34.2 3.2 24 44-67 7-30 (448)
443 COG0446 HcaD Uncharacterized N 87.5 0.6 1.3E-05 32.6 2.7 21 46-66 1-21 (415)
444 PRK05442 malate dehydrogenase; 87.4 0.73 1.6E-05 33.7 3.2 26 43-68 4-30 (326)
445 PLN02545 3-hydroxybutyryl-CoA 87.4 0.85 1.8E-05 31.9 3.5 24 44-67 5-28 (295)
446 TIGR01809 Shik-DH-AROM shikima 87.4 0.88 1.9E-05 32.2 3.6 26 42-67 124-149 (282)
447 PRK00258 aroE shikimate 5-dehy 87.4 0.39 8.5E-06 33.7 1.8 26 42-67 122-147 (278)
448 cd01339 LDH-like_MDH L-lactate 87.3 0.68 1.5E-05 32.7 3.0 22 46-67 1-22 (300)
449 PRK12814 putative NADPH-depend 87.3 0.75 1.6E-05 36.1 3.4 26 42-67 322-347 (652)
450 PRK07878 molybdopterin biosynt 87.2 0.92 2E-05 33.7 3.7 26 42-67 41-66 (392)
451 PRK07411 hypothetical protein; 87.2 0.89 1.9E-05 33.8 3.6 26 42-67 37-62 (390)
452 COG1748 LYS9 Saccharopine dehy 87.2 0.75 1.6E-05 34.9 3.3 23 44-66 2-24 (389)
453 PRK08306 dipicolinate synthase 87.2 0.93 2E-05 32.4 3.6 26 42-67 151-176 (296)
454 KOG3851 Sulfide:quinone oxidor 87.1 0.48 1E-05 36.3 2.2 25 41-65 37-61 (446)
455 COG2072 TrkA Predicted flavopr 87.1 0.62 1.3E-05 35.1 2.8 25 42-66 174-198 (443)
456 cd00704 MDH Malate dehydrogena 87.0 0.83 1.8E-05 33.3 3.3 24 45-68 2-26 (323)
457 COG1893 ApbA Ketopantoate redu 87.0 0.82 1.8E-05 33.0 3.3 22 45-66 2-23 (307)
458 cd01337 MDH_glyoxysomal_mitoch 86.9 0.85 1.8E-05 33.2 3.3 23 45-67 2-25 (310)
459 PRK07417 arogenate dehydrogena 86.8 0.8 1.7E-05 32.0 3.0 23 45-67 2-24 (279)
460 KOG0405 Pyridine nucleotide-di 86.7 0.93 2E-05 35.1 3.5 27 41-67 18-44 (478)
461 cd05213 NAD_bind_Glutamyl_tRNA 86.7 0.96 2.1E-05 32.4 3.5 25 42-66 177-201 (311)
462 PF07991 IlvN: Acetohydroxy ac 86.6 1.1 2.4E-05 30.5 3.6 25 43-67 4-28 (165)
463 PRK04148 hypothetical protein; 86.6 0.54 1.2E-05 30.8 2.0 24 43-67 17-40 (134)
464 TIGR00561 pntA NAD(P) transhyd 86.6 0.84 1.8E-05 35.7 3.3 26 42-67 163-188 (511)
465 cd01065 NAD_bind_Shikimate_DH 86.5 1.3 2.8E-05 27.6 3.6 24 43-66 19-42 (155)
466 cd01078 NAD_bind_H4MPT_DH NADP 86.1 1.3 2.7E-05 29.2 3.6 26 42-67 27-53 (194)
467 PRK14027 quinate/shikimate deh 86.1 1.2 2.5E-05 32.0 3.6 25 43-67 127-151 (283)
468 PLN00112 malate dehydrogenase 86.1 1.1 2.3E-05 34.5 3.6 26 42-67 99-125 (444)
469 PF10727 Rossmann-like: Rossma 86.0 0.36 7.8E-06 31.1 0.9 27 41-67 8-34 (127)
470 COG4716 Myosin-crossreactive a 86.0 0.27 5.9E-06 38.5 0.4 27 41-67 20-46 (587)
471 PRK14618 NAD(P)H-dependent gly 85.9 1.1 2.3E-05 31.9 3.3 23 45-67 6-28 (328)
472 PRK12779 putative bifunctional 85.9 0.97 2.1E-05 37.4 3.5 25 43-67 447-471 (944)
473 TIGR01758 MDH_euk_cyt malate d 85.6 1.1 2.4E-05 32.6 3.4 23 45-67 1-24 (324)
474 TIGR01317 GOGAT_sm_gam glutama 85.5 1.1 2.4E-05 33.9 3.5 25 42-66 282-306 (485)
475 PRK00421 murC UDP-N-acetylmura 85.5 0.84 1.8E-05 34.0 2.8 25 43-67 7-32 (461)
476 TIGR03736 PRTRC_ThiF PRTRC sys 85.4 1.2 2.7E-05 31.5 3.4 25 42-66 10-34 (244)
477 PRK12548 shikimate 5-dehydroge 85.3 1.3 2.9E-05 31.4 3.6 26 42-67 125-150 (289)
478 PF10100 DUF2338: Uncharacteri 85.2 1.1 2.3E-05 34.7 3.2 23 44-66 2-24 (429)
479 PLN02852 ferredoxin-NADP+ redu 85.0 1.2 2.5E-05 34.5 3.4 23 43-65 166-188 (491)
480 PRK12439 NAD(P)H-dependent gly 85.0 1.3 2.7E-05 32.1 3.4 24 43-66 7-30 (341)
481 cd08230 glucose_DH Glucose deh 84.9 1.5 3.3E-05 31.0 3.7 25 43-67 173-197 (355)
482 PRK14619 NAD(P)H-dependent gly 84.9 1.5 3.3E-05 31.0 3.7 24 44-67 5-28 (308)
483 PRK09496 trkA potassium transp 84.8 1.3 2.9E-05 32.3 3.5 23 45-67 2-24 (453)
484 cd01336 MDH_cytoplasmic_cytoso 84.7 1.3 2.8E-05 32.2 3.4 24 44-67 3-27 (325)
485 cd01075 NAD_bind_Leu_Phe_Val_D 84.7 1.7 3.8E-05 29.3 3.8 26 42-67 27-52 (200)
486 TIGR00936 ahcY adenosylhomocys 84.6 1.3 2.9E-05 33.6 3.5 26 42-67 194-219 (406)
487 PLN00106 malate dehydrogenase 84.6 1.7 3.8E-05 31.8 4.0 26 42-67 17-43 (323)
488 PRK01390 murD UDP-N-acetylmura 84.5 1.2 2.6E-05 33.0 3.2 25 43-67 9-33 (460)
489 PLN02520 bifunctional 3-dehydr 84.5 1.4 3E-05 34.1 3.6 26 42-67 378-403 (529)
490 TIGR03366 HpnZ_proposed putati 84.3 1.7 3.6E-05 29.8 3.6 25 43-67 121-145 (280)
491 PRK08017 oxidoreductase; Provi 84.2 1.6 3.5E-05 28.8 3.5 24 44-67 3-27 (256)
492 PRK06153 hypothetical protein; 84.2 1.1 2.4E-05 34.1 2.9 26 42-67 175-200 (393)
493 PRK12550 shikimate 5-dehydroge 84.2 1.6 3.5E-05 31.1 3.6 24 44-67 123-146 (272)
494 cd01488 Uba3_RUB Ubiquitin act 84.1 1.6 3.5E-05 31.7 3.6 23 45-67 1-23 (291)
495 PF13460 NAD_binding_10: NADH( 84.0 2 4.3E-05 27.2 3.7 22 46-67 1-23 (183)
496 TIGR02853 spore_dpaA dipicolin 84.0 1.5 3.3E-05 31.3 3.5 26 42-67 150-175 (287)
497 PRK12769 putative oxidoreducta 83.7 1.5 3.2E-05 34.3 3.5 24 43-66 468-491 (654)
498 cd01491 Ube1_repeat1 Ubiquitin 83.5 1.7 3.8E-05 31.4 3.6 27 41-67 17-43 (286)
499 TIGR01423 trypano_reduc trypan 83.5 1.6 3.6E-05 33.1 3.6 22 43-64 187-208 (486)
500 TIGR01087 murD UDP-N-acetylmur 83.4 1.4 3.1E-05 32.3 3.1 23 45-67 1-23 (433)
No 1
>PLN02985 squalene monooxygenase
Probab=98.63 E-value=8.9e-09 Score=78.03 Aligned_cols=59 Identities=27% Similarity=0.343 Sum_probs=41.4
Q ss_pred eeeeeceeeeeeecCCcCCccccccCCCCCCCcccccCccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 3 IVAFTRRLNCFSRIKTFPYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++|+++|+.++..+. ........+.......+..+||+|||||++|+++|+.|+++|+
T Consensus 9 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~DViIVGAG~aGlalA~aLa~~G~ 67 (514)
T PLN02985 9 LLAFVLTWTVFYVTNR------KKKATELADAVAEERKDGATDVIIVGAGVGGSALAYALAKDGR 67 (514)
T ss_pred HHHHHHHHHHHHHhhh------hhhhcchhhhhcccCcCCCceEEEECCCHHHHHHHHHHHHcCC
Confidence 3688999999998887 1111111111111123456899999999999999999999986
No 2
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.53 E-value=6.9e-08 Score=65.88 Aligned_cols=25 Identities=48% Similarity=0.775 Sum_probs=21.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
++||+||||||+|+++|+.|+++|+
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~ 25 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGI 25 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTC
T ss_pred CceEEEECCCHHHHHHHHHHHhccc
Confidence 3799999999999999999999986
No 3
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.45 E-value=3e-07 Score=65.79 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=24.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+||||||+|+++|+.|+++|+
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~ 42 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGL 42 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCC
Confidence 46899999999999999999999986
No 4
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.41 E-value=2.3e-07 Score=67.35 Aligned_cols=26 Identities=42% Similarity=0.594 Sum_probs=24.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+|||+||||++||+.|+++|+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~ 27 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGL 27 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCC
Confidence 46999999999999999999999984
No 5
>PRK09126 hypothetical protein; Provisional
Probab=98.39 E-value=3.3e-07 Score=65.16 Aligned_cols=27 Identities=33% Similarity=0.568 Sum_probs=24.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
.++||+||||||+|+++|+.|+++|+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~ 28 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLK 28 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCc
Confidence 468999999999999999999999873
No 6
>PRK08013 oxidoreductase; Provisional
Probab=98.36 E-value=4.2e-07 Score=65.69 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=24.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+++||+||||||+|+++|+.|+++|+
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~ 27 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGL 27 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCC
Confidence 35899999999999999999999986
No 7
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.2e-07 Score=65.62 Aligned_cols=26 Identities=35% Similarity=0.774 Sum_probs=24.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.+||+|||+||+||+||+++++.++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l 27 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGL 27 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCC
Confidence 46999999999999999999999885
No 8
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.35 E-value=5e-07 Score=60.80 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=22.7
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+||||||+|+++|+.|+++|+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~ 24 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGL 24 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC
Confidence 699999999999999999999986
No 9
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.33 E-value=5.4e-07 Score=64.67 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=23.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+||+||||||+|+++|+.|+++|+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~ 27 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGR 27 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC
Confidence 4799999999999999999999986
No 10
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.33 E-value=5.2e-07 Score=63.96 Aligned_cols=26 Identities=38% Similarity=0.752 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHC---CC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKL---GI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~---G~ 67 (68)
..+||+||||||+|+++|+.|+++ |+
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~ 30 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGL 30 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCC
Confidence 468999999999999999999998 76
No 11
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.33 E-value=5.2e-07 Score=64.94 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=22.9
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+||||||+|+++|+.|+++|+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~ 24 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGI 24 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC
Confidence 699999999999999999999986
No 12
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.31 E-value=6.6e-07 Score=65.90 Aligned_cols=26 Identities=35% Similarity=0.624 Sum_probs=24.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.+||+||||||+|++||+.|+++|+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~ 29 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGA 29 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCC
Confidence 35999999999999999999999986
No 13
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.31 E-value=6.7e-07 Score=64.46 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=24.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+||||||+|+++|+.|+++|+
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~ 28 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDL 28 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCC
Confidence 45899999999999999999999986
No 14
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.31 E-value=4.9e-07 Score=64.01 Aligned_cols=27 Identities=44% Similarity=0.631 Sum_probs=22.8
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++||+|||+||+||+||++|+++|+
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~ 41 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGL 41 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCC
Confidence 356999999999999999999999886
No 15
>PRK06184 hypothetical protein; Provisional
Probab=98.30 E-value=7e-07 Score=66.40 Aligned_cols=27 Identities=52% Similarity=0.824 Sum_probs=24.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
.++||+||||||+||++|+.|+++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~ 28 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS 28 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc
Confidence 458999999999999999999999973
No 16
>PRK10015 oxidoreductase; Provisional
Probab=98.30 E-value=7.1e-07 Score=65.94 Aligned_cols=26 Identities=27% Similarity=0.608 Sum_probs=24.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+||||||+|++||+.|+++|+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~ 29 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGL 29 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCC
Confidence 45999999999999999999999986
No 17
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.29 E-value=7.1e-07 Score=63.86 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=24.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+||||||+|+++|+.|+++|+
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~ 30 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGL 30 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCC
Confidence 46899999999999999999999986
No 18
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.29 E-value=6.5e-07 Score=64.31 Aligned_cols=25 Identities=44% Similarity=0.650 Sum_probs=23.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
++||+||||||+|+++|+.|+++|+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~ 26 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGL 26 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCC
Confidence 4799999999999999999999986
No 19
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.29 E-value=7.7e-07 Score=63.35 Aligned_cols=27 Identities=30% Similarity=0.658 Sum_probs=24.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+..+||+||||||+|+++|+.|+++|+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~ 31 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGA 31 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCC
Confidence 456899999999999999999999986
No 20
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.28 E-value=8.6e-07 Score=62.84 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=24.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+||||||+|+++|+.|++.|+
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~ 29 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGL 29 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCC
Confidence 46899999999999999999999986
No 21
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.27 E-value=7.7e-07 Score=63.41 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=24.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+++||+||||||+|+++|+.|+++|+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~ 29 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGF 29 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCC
Confidence 46999999999999999999999986
No 22
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.27 E-value=6e-07 Score=64.33 Aligned_cols=27 Identities=44% Similarity=0.668 Sum_probs=24.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+.||+|||+||+||+|||+|+++|+
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~ 54 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGL 54 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCc
Confidence 356899999999999999999999986
No 23
>PRK07045 putative monooxygenase; Reviewed
Probab=98.27 E-value=7.8e-07 Score=63.56 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=24.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+||||||+||++|+.|+++|+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~ 29 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGH 29 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCC
Confidence 45899999999999999999999986
No 24
>PRK06185 hypothetical protein; Provisional
Probab=98.26 E-value=1e-06 Score=63.08 Aligned_cols=26 Identities=38% Similarity=0.828 Sum_probs=24.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+||||||+|+++|+.|+++|+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~ 30 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGV 30 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC
Confidence 56999999999999999999999986
No 25
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.26 E-value=9.6e-07 Score=63.77 Aligned_cols=25 Identities=48% Similarity=0.913 Sum_probs=23.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+||+||||||+||++|+.|+++|+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~ 26 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGL 26 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC
Confidence 5799999999999999999999996
No 26
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.25 E-value=9.8e-07 Score=61.79 Aligned_cols=27 Identities=48% Similarity=0.673 Sum_probs=24.7
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++||+|||+||+|+++|+.|++.|+
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~ 49 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGL 49 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCC
Confidence 456999999999999999999999886
No 27
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.24 E-value=1.3e-06 Score=65.27 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=24.9
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+||+||||||+|+++|+.|+++|+
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~ 63 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGI 63 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCC
Confidence 456999999999999999999999986
No 28
>PRK08244 hypothetical protein; Provisional
Probab=98.24 E-value=1.1e-06 Score=65.06 Aligned_cols=25 Identities=44% Similarity=0.779 Sum_probs=23.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
++||+||||||+||++|+.|+++|+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~ 26 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGV 26 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC
Confidence 4899999999999999999999986
No 29
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.23 E-value=1.1e-06 Score=61.79 Aligned_cols=23 Identities=43% Similarity=0.845 Sum_probs=22.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
||+||||||+|+++|+.|+++|+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~ 23 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL 23 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC
Confidence 79999999999999999999986
No 30
>PRK07236 hypothetical protein; Provisional
Probab=98.21 E-value=1.5e-06 Score=62.35 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=25.2
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
+...||+|||||++||++|+.|+++|+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~ 31 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWD 31 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCC
Confidence 4568999999999999999999999873
No 31
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.21 E-value=1.6e-06 Score=60.86 Aligned_cols=27 Identities=48% Similarity=0.690 Sum_probs=24.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++||+|||+||+||++|+.|+++|+
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~ 45 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGL 45 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCC
Confidence 356999999999999999999999885
No 32
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.20 E-value=1.6e-06 Score=61.15 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||||++|+++|++|+++|+
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~ 27 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGL 27 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCC
Confidence 35899999999999999999999985
No 33
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.20 E-value=2.6e-06 Score=62.99 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=23.2
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
+.++||+|||+|++|+++|++|+++
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~ 46 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQ 46 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHh
Confidence 4568999999999999999999987
No 34
>PRK10262 thioredoxin reductase; Provisional
Probab=98.20 E-value=2e-06 Score=60.32 Aligned_cols=27 Identities=22% Similarity=0.534 Sum_probs=24.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++||+|||+||+||++|..|+++|+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~ 30 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANL 30 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCC
Confidence 457999999999999999999999885
No 35
>PRK06126 hypothetical protein; Provisional
Probab=98.19 E-value=1.7e-06 Score=64.86 Aligned_cols=27 Identities=52% Similarity=0.912 Sum_probs=24.8
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+||+||||||+||++|+.|+++|+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~ 31 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGV 31 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCC
Confidence 346899999999999999999999997
No 36
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.18 E-value=1.7e-06 Score=62.64 Aligned_cols=26 Identities=54% Similarity=0.773 Sum_probs=24.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
.+||+||||||+|+++|+.|+++|+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~ 27 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGID 27 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCC
Confidence 47999999999999999999999973
No 37
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.18 E-value=1.7e-06 Score=59.04 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=22.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
||+|||+|++|+++|++|+++|+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~ 23 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH 23 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC
Confidence 79999999999999999999986
No 38
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.18 E-value=1.4e-06 Score=61.59 Aligned_cols=23 Identities=57% Similarity=0.967 Sum_probs=22.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-C
Q 035312 45 PVLIVGAGPVGLVLSILLTKLG-I 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G-~ 67 (68)
||+||||||+|+++|+.|+++| +
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~ 24 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI 24 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc
Confidence 7999999999999999999999 5
No 39
>PRK06847 hypothetical protein; Provisional
Probab=98.17 E-value=2e-06 Score=60.72 Aligned_cols=25 Identities=52% Similarity=0.692 Sum_probs=23.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..||+||||||+||++|+.|++.|+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~ 28 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGI 28 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC
Confidence 5799999999999999999999986
No 40
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.17 E-value=2e-06 Score=61.26 Aligned_cols=26 Identities=50% Similarity=0.754 Sum_probs=24.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
..||+||||||+||++|+.|+++|+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~ 29 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIK 29 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCc
Confidence 57999999999999999999999863
No 41
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.17 E-value=2e-06 Score=60.54 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=24.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.+.||+|||+|++|+++|++|+++|.
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~ 28 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGA 28 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCC
Confidence 356899999999999999999999984
No 42
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.16 E-value=2e-06 Score=61.87 Aligned_cols=26 Identities=50% Similarity=0.715 Sum_probs=24.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
++||+||||||+||++|+.|+++|+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~ 27 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID 27 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC
Confidence 47999999999999999999999873
No 43
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.15 E-value=3.8e-06 Score=63.19 Aligned_cols=28 Identities=54% Similarity=0.833 Sum_probs=25.3
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
+..+||+||||||+||++|+.|+++|+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~ 48 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVP 48 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCc
Confidence 3568999999999999999999999863
No 44
>PRK07208 hypothetical protein; Provisional
Probab=98.15 E-value=2.5e-06 Score=62.61 Aligned_cols=26 Identities=42% Similarity=0.627 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+..||+|||||++||++|+.|+++|+
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~ 28 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGY 28 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC
Confidence 46899999999999999999999886
No 45
>PRK07190 hypothetical protein; Provisional
Probab=98.15 E-value=2.3e-06 Score=64.35 Aligned_cols=26 Identities=46% Similarity=0.742 Sum_probs=24.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+||||||+||++|+.|+++|+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi 29 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGL 29 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCC
Confidence 45899999999999999999999986
No 46
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.14 E-value=2.5e-06 Score=60.25 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=22.6
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+|||||++|+++|++|+++|.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~ 24 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGK 24 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC
Confidence 599999999999999999999885
No 47
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.14 E-value=1.9e-06 Score=61.33 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.9
Q ss_pred cCEEEECCCHHHHHHHHHHHHCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
+||+||||||+|+++|+.|+++|
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g 24 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAA 24 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCC
Confidence 79999999999999999999985
No 48
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.14 E-value=2.9e-06 Score=57.52 Aligned_cols=24 Identities=38% Similarity=0.742 Sum_probs=22.5
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+|||||++||++|..|++.|+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~ 24 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANL 24 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC
Confidence 589999999999999999999875
No 49
>PRK06753 hypothetical protein; Provisional
Probab=98.13 E-value=2.3e-06 Score=60.46 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=22.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
||+||||||+||++|+.|+++|+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~ 25 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE 25 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc
Confidence 799999999999999999999873
No 50
>PRK06996 hypothetical protein; Provisional
Probab=98.13 E-value=2.4e-06 Score=61.67 Aligned_cols=27 Identities=41% Similarity=0.593 Sum_probs=24.2
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+||+||||||+|+++|+.|+++|+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~ 35 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSA 35 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCC
Confidence 356899999999999999999999873
No 51
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.12 E-value=2.8e-06 Score=62.19 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+++||+|||+||+|+.+|+.|+++|+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~ 27 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGW 27 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCC
Confidence 35899999999999999999999885
No 52
>PRK06834 hypothetical protein; Provisional
Probab=98.12 E-value=2.8e-06 Score=63.90 Aligned_cols=26 Identities=38% Similarity=0.623 Sum_probs=24.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+||||||+|+++|+.|+++|+
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~ 27 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGV 27 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCC
Confidence 45899999999999999999999986
No 53
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.12 E-value=2.4e-06 Score=61.25 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=22.8
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.||+||||||+|+++|+.|+++|+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~ 25 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGI 25 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCC
Confidence 689999999999999999999986
No 54
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.09 E-value=2.9e-06 Score=62.29 Aligned_cols=24 Identities=46% Similarity=0.764 Sum_probs=22.3
Q ss_pred cCEEEECCCHHHHHHHHHHHH----CCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTK----LGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~----~G~ 67 (68)
+||+||||||+|+++|+.|++ +|+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~ 28 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDL 28 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCC
Confidence 699999999999999999998 675
No 55
>PLN02697 lycopene epsilon cyclase
Probab=98.09 E-value=5.4e-06 Score=63.72 Aligned_cols=27 Identities=33% Similarity=0.775 Sum_probs=24.4
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+||+||||||+|+++|+.|+++|+
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl 132 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGL 132 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCC
Confidence 345899999999999999999999986
No 56
>PLN02463 lycopene beta cyclase
Probab=98.09 E-value=5.9e-06 Score=62.08 Aligned_cols=27 Identities=33% Similarity=0.741 Sum_probs=24.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+||+||||||+|+++|..|+++|+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl 52 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGL 52 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCC
Confidence 345899999999999999999999886
No 57
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.08 E-value=4e-06 Score=61.33 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+++||+|||+||+|+++|..|++.|.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~ 27 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGK 27 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCC
Confidence 36899999999999999999999885
No 58
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.07 E-value=3.4e-06 Score=62.93 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=19.4
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
|||+|||||||||+||+.++++|.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~ 24 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGA 24 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC
Confidence 699999999999999999999885
No 59
>PRK06116 glutathione reductase; Validated
Probab=98.05 E-value=4.9e-06 Score=61.08 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=23.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
++||+|||+||+|+++|..|+++|.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~ 28 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGA 28 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC
Confidence 5899999999999999999999985
No 60
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.05 E-value=5e-06 Score=53.62 Aligned_cols=23 Identities=39% Similarity=0.772 Sum_probs=21.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
||+|||+|++|+.+|..|++.++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~ 23 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA 23 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS
T ss_pred CEEEEecHHHHHHHHHHHhcCCC
Confidence 79999999999999999998764
No 61
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.05 E-value=5e-06 Score=62.57 Aligned_cols=27 Identities=37% Similarity=0.650 Sum_probs=24.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+||+||||||+||++|.+|++.|+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~ 235 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGI 235 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC
Confidence 346899999999999999999999986
No 62
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.05 E-value=4e-06 Score=60.26 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.4
Q ss_pred cCEEEECCCHHHHHHHHHHHHCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
.+|+|||||++||+||+.|+++|
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G 23 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKG 23 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhC
Confidence 36999999999999999999987
No 63
>PLN02576 protoporphyrinogen oxidase
Probab=98.05 E-value=6.5e-06 Score=60.65 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=24.0
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL-GI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~-G~ 67 (68)
..++||+|||||++||++|+.|+++ |+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~ 37 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGV 37 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCC
Confidence 3457999999999999999999998 65
No 64
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.05 E-value=5e-06 Score=58.76 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=22.5
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+|||+|++|+++|++|+++|.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~ 24 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGL 24 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC
Confidence 599999999999999999999885
No 65
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.05 E-value=4.6e-06 Score=60.86 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=22.7
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.||+||||||+|+++|+.|+++|+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~ 24 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGI 24 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC
Confidence 489999999999999999999986
No 66
>PRK07588 hypothetical protein; Provisional
Probab=98.04 E-value=4.6e-06 Score=59.68 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=22.5
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.||+||||||+||++|+.|+++|+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~ 24 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGH 24 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC
Confidence 389999999999999999999986
No 67
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.04 E-value=5.5e-06 Score=62.33 Aligned_cols=27 Identities=52% Similarity=0.812 Sum_probs=24.7
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.++||+|||+||+||++|+.|+++|+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~ 34 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGV 34 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC
Confidence 356899999999999999999999986
No 68
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.03 E-value=4.8e-06 Score=64.66 Aligned_cols=26 Identities=50% Similarity=0.784 Sum_probs=23.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKL-GI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~-G~ 67 (68)
.++||+||||||+||++|+.|++. |+
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi 57 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDI 57 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCC
Confidence 468999999999999999999994 86
No 69
>PRK07538 hypothetical protein; Provisional
Probab=98.03 E-value=5e-06 Score=60.22 Aligned_cols=24 Identities=46% Similarity=0.634 Sum_probs=22.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
||+||||||+||++|+.|+++|+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~ 25 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIE 25 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc
Confidence 899999999999999999999863
No 70
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.02 E-value=5.9e-06 Score=60.59 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=24.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+..+||+|||+||+|+.+|+.|++.|.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~ 29 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGK 29 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCC
Confidence 346999999999999999999999885
No 71
>PRK07233 hypothetical protein; Provisional
Probab=98.02 E-value=5.7e-06 Score=58.96 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|+|||||++||++|+.|+++|+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~ 23 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGH 23 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC
Confidence 68999999999999999999885
No 72
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.02 E-value=6.2e-06 Score=59.50 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=23.2
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
.+|+||||||+||++|+.|+++|+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~ 27 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA 27 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc
Confidence 6899999999999999999999863
No 73
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.02 E-value=6.1e-06 Score=60.50 Aligned_cols=26 Identities=38% Similarity=0.623 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+||+|+++|..|++.|.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~ 27 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGK 27 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCC
Confidence 45999999999999999999999885
No 74
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.02 E-value=5.5e-06 Score=58.99 Aligned_cols=23 Identities=30% Similarity=0.819 Sum_probs=21.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
||+||||||+|+++|+.|+++|+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~ 23 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL 23 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC
Confidence 89999999999999999999885
No 75
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.01 E-value=6.3e-06 Score=62.78 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=23.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+||+||||||+||++|..|+++|+
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~ 28 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKL 28 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCC
Confidence 4899999999999999999999875
No 76
>PRK06370 mercuric reductase; Validated
Probab=98.01 E-value=6.4e-06 Score=60.74 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=24.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.++||+|||+||+|+++|+.|++.|.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~ 29 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGM 29 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCC
Confidence 346999999999999999999999886
No 77
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.00 E-value=6.6e-06 Score=61.13 Aligned_cols=26 Identities=38% Similarity=0.623 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+||+|+.+|..++++|.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~ 27 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGL 27 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCC
Confidence 35899999999999999999999885
No 78
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.00 E-value=6.5e-06 Score=61.01 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=23.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
++||+|||+||+|+.+|..+++.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~ 26 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGA 26 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC
Confidence 5899999999999999999999985
No 79
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.00 E-value=6e-06 Score=60.86 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=23.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
++||+|||+||+|+++|+.++++|+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~ 26 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGA 26 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC
Confidence 5899999999999999999999986
No 80
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.99 E-value=7.1e-06 Score=61.80 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=24.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+||+||||||+|+++|..|++.|+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~ 236 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL 236 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC
Confidence 346999999999999999999999886
No 81
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.99 E-value=6.3e-06 Score=61.99 Aligned_cols=26 Identities=35% Similarity=0.666 Sum_probs=24.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+|||||+.||+||..|+++|+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~ 27 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGL 27 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCC
Confidence 45899999999999999999999996
No 82
>PRK11445 putative oxidoreductase; Provisional
Probab=97.97 E-value=6.8e-06 Score=58.69 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.9
Q ss_pred cCEEEECCCHHHHHHHHHHHHC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
+||+||||||+|+++|+.|++.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~ 23 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK 23 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc
Confidence 7999999999999999999886
No 83
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.97 E-value=8.5e-06 Score=60.96 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=25.4
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
.+++||+|||||++||++|+.|.+.|+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~ 33 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVP 33 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCC
Confidence 4679999999999999999999999863
No 84
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.97 E-value=8.7e-06 Score=59.90 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=24.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+|++|+++|+.++++|.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~ 28 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGA 28 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCC
Confidence 46899999999999999999999885
No 85
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.96 E-value=8.8e-06 Score=62.33 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=25.3
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
...++|+|||||+|||+||.+|++.|+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~ 40 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFD 40 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCc
Confidence 4568999999999999999999999863
No 86
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.96 E-value=1.4e-05 Score=57.48 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=23.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC-C
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL-G 66 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~-G 66 (68)
..++||+|||||++|+++|++|+++ |
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g 54 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHG 54 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcC
Confidence 3568999999999999999999985 7
No 87
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.95 E-value=8e-06 Score=61.78 Aligned_cols=26 Identities=38% Similarity=0.663 Sum_probs=24.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.+||+|||||||||+||..++++|.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~ 27 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGR 27 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCC
Confidence 46899999999999999999999885
No 88
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.95 E-value=9.6e-06 Score=59.62 Aligned_cols=26 Identities=38% Similarity=0.671 Sum_probs=24.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+||+|+.+|..|+++|.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~ 28 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGL 28 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCC
Confidence 46999999999999999999999885
No 89
>PRK07121 hypothetical protein; Validated
Probab=97.95 E-value=1.6e-05 Score=59.28 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=24.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++||+|||+|.+||++|+.++++|.
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~ 44 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGA 44 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCC
Confidence 457999999999999999999999884
No 90
>PLN02268 probable polyamine oxidase
Probab=97.94 E-value=9.2e-06 Score=58.96 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=22.2
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+|+|||||++||+||+.|.++|+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~ 24 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASF 24 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC
Confidence 479999999999999999999885
No 91
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.94 E-value=9.5e-06 Score=59.40 Aligned_cols=24 Identities=38% Similarity=0.744 Sum_probs=22.9
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+|||+||+|+.+|..|++.|.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~ 25 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGL 25 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCC
Confidence 899999999999999999999885
No 92
>PRK14694 putative mercuric reductase; Provisional
Probab=97.93 E-value=1.1e-05 Score=59.72 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=24.8
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++||+|||+||+|+++|..|++.|.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~ 30 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGA 30 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC
Confidence 457999999999999999999999885
No 93
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.92 E-value=1e-05 Score=58.22 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHHC--CC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKL--GI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~--G~ 67 (68)
.+||+|||||++|+++|++|+++ |.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~ 28 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGA 28 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCC
Confidence 37999999999999999999998 64
No 94
>PRK05868 hypothetical protein; Validated
Probab=97.92 E-value=1.1e-05 Score=58.24 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=22.6
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.||+||||||+|+++|+.|+++|+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~ 25 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGY 25 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC
Confidence 489999999999999999999986
No 95
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.91 E-value=1.2e-05 Score=59.57 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=24.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+|||+||+|+.+|..|++.|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~ 28 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGL 28 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC
Confidence 46999999999999999999999885
No 96
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.91 E-value=1.2e-05 Score=58.49 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=21.2
Q ss_pred cCEEEECCCHHHHHHHHHHHHC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
.||+|||||++||++|+.|+++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~ 24 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKE 24 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhc
Confidence 6899999999999999999998
No 97
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.90 E-value=1.2e-05 Score=59.45 Aligned_cols=24 Identities=42% Similarity=0.696 Sum_probs=22.9
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.||+|||+|++||++|..|+++|+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~ 25 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGY 25 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC
Confidence 689999999999999999999986
No 98
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.89 E-value=1.3e-05 Score=57.74 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=22.6
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+|||+|++|+++|++|+++|.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~ 25 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY 25 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC
Confidence 599999999999999999999885
No 99
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.88 E-value=1.6e-05 Score=59.90 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|+|||||++||++|.+|.++|+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~ 34 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGH 34 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCC
Confidence 45899999999999999999999985
No 100
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.88 E-value=1.8e-05 Score=62.65 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=24.8
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....+|+||||||+||++|+.|+++|+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi 105 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGF 105 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCC
Confidence 456899999999999999999999986
No 101
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.88 E-value=1.5e-05 Score=58.94 Aligned_cols=25 Identities=40% Similarity=0.696 Sum_probs=23.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
++||+|||+||+|+.+|..|++.|.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~ 28 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGL 28 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC
Confidence 5899999999999999999999875
No 102
>PLN02661 Putative thiazole synthesis
Probab=97.88 E-value=9.9e-06 Score=60.22 Aligned_cols=26 Identities=42% Similarity=0.544 Sum_probs=22.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKL-GI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~-G~ 67 (68)
.++||+|||+|++|+++|++|+++ |+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~ 117 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNV 117 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999975 53
No 103
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.88 E-value=1.3e-05 Score=65.03 Aligned_cols=26 Identities=38% Similarity=0.722 Sum_probs=24.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|+|||+|||||+||+.|+++|+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~ 330 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF 330 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC
Confidence 46899999999999999999999986
No 104
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.87 E-value=1.5e-05 Score=57.29 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
||+|||+|++||+||+.++++|.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~ 23 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGA 23 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT
T ss_pred CEEEECCCHHHHHHHHHHhhhcC
Confidence 89999999999999999999985
No 105
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.86 E-value=1.1e-05 Score=61.80 Aligned_cols=58 Identities=28% Similarity=0.357 Sum_probs=40.0
Q ss_pred eeeeceeeeeeecCCcCCccccccCCCCCCCcccccCccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 4 VAFTRRLNCFSRIKTFPYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
++|.+.|..++.+++.... ............+..+||+|||||.+|-++|+.|+|.|.
T Consensus 12 ~af~l~~~~~~~~~~~~~a------~~~~~~~~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGR 69 (509)
T KOG1298|consen 12 LAFVLTWTVFYLTKRKKKA------TNVAETSVEARNDGAADVIIVGAGVAGSALAYALAKDGR 69 (509)
T ss_pred HHHHhhheeeecccccccc------cccchhhhhhccCCcccEEEECCcchHHHHHHHHhhCCc
Confidence 5788899999877772211 111111111123456899999999999999999999984
No 106
>PTZ00367 squalene epoxidase; Provisional
Probab=97.85 E-value=1.6e-05 Score=61.42 Aligned_cols=26 Identities=38% Similarity=0.418 Sum_probs=24.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+||||||+|+++|+.|+++|+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~ 57 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGR 57 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCC
Confidence 46899999999999999999999986
No 107
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.85 E-value=1.5e-05 Score=62.75 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=24.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||||+||+.||+.+++.|.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~ 28 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGA 28 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCC
Confidence 45999999999999999999999986
No 108
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.85 E-value=1.3e-05 Score=58.00 Aligned_cols=23 Identities=52% Similarity=0.879 Sum_probs=20.3
Q ss_pred CEEEECCCHHHHHHHHHH--HHCCC
Q 035312 45 PVLIVGAGPVGLVLSILL--TKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L--~~~G~ 67 (68)
||+||||||||+++|+.| ++.|.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~ 25 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGL 25 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCC
Confidence 899999999999999999 55553
No 109
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.85 E-value=1.8e-05 Score=58.35 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=22.7
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+|||+||+|+.+|..++++|.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~ 24 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGA 24 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC
Confidence 699999999999999999999885
No 110
>PRK12831 putative oxidoreductase; Provisional
Probab=97.83 E-value=2e-05 Score=58.92 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=24.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+||+|||+||+||++|+.|++.|+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~ 164 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGY 164 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC
Confidence 356899999999999999999999986
No 111
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.83 E-value=2e-05 Score=59.10 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=24.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||||++|+++|+.|+++|+
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG~ 30 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRGL 30 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCC
Confidence 45899999999999999999999986
No 112
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.82 E-value=2.5e-05 Score=60.85 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=30.4
Q ss_pred cccccCCCCCCCcccccCccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 23 YGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.|.-..|.....+. .+..++||+|||+|.|||+||+.+++.|.
T Consensus 17 ~~~~~~~~~~~~~~--~~~~~~DVlVVG~G~AGl~AAi~Aae~G~ 59 (640)
T PRK07573 17 KWDRYKFHLKLVNP--ANKRKFDVIVVGTGLAGASAAATLGELGY 59 (640)
T ss_pred hhhhccccccccCC--ccccccCEEEECccHHHHHHHHHHHHcCC
Confidence 34344454433321 12356899999999999999999999875
No 113
>PLN02815 L-aspartate oxidase
Probab=97.81 E-value=2.6e-05 Score=60.45 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=23.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..++||+|||+|.|||+||+.+++.|
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G 52 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG 52 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC
Confidence 45689999999999999999999876
No 114
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.81 E-value=1.7e-05 Score=58.52 Aligned_cols=23 Identities=35% Similarity=0.729 Sum_probs=20.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
||+||||||+|++||+.+++.|.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~ 23 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGA 23 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS
T ss_pred CEEEECccHHHHHHHHHHHHCCC
Confidence 89999999999999999999985
No 115
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.81 E-value=1.8e-05 Score=56.65 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=21.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
||+|||||++|+++|++|+++|.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~ 24 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH 24 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC
Confidence 79999999999999999999886
No 116
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.81 E-value=1.8e-05 Score=58.01 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.4
Q ss_pred cCEEEECCCHHHHHHHHHHHHC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
++|+|||||++||++|+.|++.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~ 23 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKL 23 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhh
Confidence 4699999999999999999986
No 117
>PRK13748 putative mercuric reductase; Provisional
Probab=97.80 E-value=2.4e-05 Score=58.75 Aligned_cols=26 Identities=15% Similarity=0.357 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+||+|+.+|..|++.|.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~ 122 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGA 122 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC
Confidence 35899999999999999999999885
No 118
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.80 E-value=2.2e-05 Score=64.61 Aligned_cols=26 Identities=35% Similarity=0.653 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|+|||||||||+||+.|+++|+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~ 561 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH 561 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC
Confidence 45899999999999999999999986
No 119
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.77 E-value=2.6e-05 Score=58.79 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=23.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+||+|||+||+|+.+|..++++|.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~ 29 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGK 29 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC
Confidence 4899999999999999999999885
No 120
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.77 E-value=2.5e-05 Score=58.06 Aligned_cols=26 Identities=38% Similarity=0.703 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|++|||+||+|+++|+.+++.|.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~ 28 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGL 28 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCC
Confidence 35899999999999999999999885
No 121
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.77 E-value=2.9e-05 Score=58.48 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=24.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.++||+|||+|.+|+++|+.++++|.
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga 85 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGM 85 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCC
Confidence 357899999999999999999999885
No 122
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.76 E-value=3e-05 Score=58.51 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=24.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+|||||++|+++|+.|+++|+
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl 30 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGL 30 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC
Confidence 45999999999999999999999986
No 123
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.76 E-value=2.7e-05 Score=60.19 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=23.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..||+|||||++|+++|++|+++|+
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~ 284 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGW 284 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCC
Confidence 4799999999999999999999985
No 124
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.75 E-value=3.2e-05 Score=57.62 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+||+|+.+|..+++.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~ 28 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGL 28 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCC
Confidence 35999999999999999999999885
No 125
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.75 E-value=2.6e-05 Score=56.39 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=21.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G 66 (68)
+|+|||||++||++|+.|+++|
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g 23 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHS 23 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcC
Confidence 6999999999999999999987
No 126
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.74 E-value=3.3e-05 Score=58.86 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=24.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+|||||++|+++|+.|+++|+
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~ 30 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGL 30 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCC
Confidence 46999999999999999999999986
No 127
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.74 E-value=3.3e-05 Score=56.48 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=21.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|+|||+|++||++|+.|+++|+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~ 23 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGH 23 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC
Confidence 58999999999999999999986
No 128
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.74 E-value=3e-05 Score=60.01 Aligned_cols=26 Identities=38% Similarity=0.648 Sum_probs=24.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|+|||+||+||++|+.|++.|+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~ 351 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV 351 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 45799999999999999999999986
No 129
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.74 E-value=4.8e-05 Score=58.40 Aligned_cols=55 Identities=27% Similarity=0.269 Sum_probs=35.1
Q ss_pred eeeeecCCcCCccccccCCCCCCCcccccC-ccccCEEEECCCHHHHHHHHHHHHC
Q 035312 11 NCFSRIKTFPYPYGYTPCRALSDSKTIVSN-EAVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
+.+++.|++.-+.+.+++-...+....... ...+||+||||||+|+++|..|..+
T Consensus 3 ~r~~~~~~~vr~v~~t~~~~~~~~~s~~~~~~~~~dVvIvGgGpvg~aLAa~l~sn 58 (481)
T KOG3855|consen 3 TRITVRMSRVRAVRYTQRLDTRRTASAKSTDTAKYDVVIVGGGPVGLALAAALGSN 58 (481)
T ss_pred ceeeeccccccccccccccccccccccccCCcccCCEEEECCchHHHHHHHHhccC
Confidence 455566664444445554444333322222 3479999999999999999988754
No 130
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.74 E-value=3.3e-05 Score=58.78 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=22.9
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.||+|||||++|+.+|+.|+++|+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl 26 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGV 26 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC
Confidence 699999999999999999999986
No 131
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.72 E-value=5.4e-05 Score=57.93 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=23.0
Q ss_pred ccccCEEEECCCHHHHHHHHHHHH--CCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTK--LGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~--~G~ 67 (68)
....+|+|||+|||||.||..|++ .|+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~ 52 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA 52 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC
Confidence 346799999999999999999986 454
No 132
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.71 E-value=3.8e-05 Score=63.37 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=24.8
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...++|+|||+|||||++|+.|+++|+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh 407 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGH 407 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCC
Confidence 356899999999999999999999986
No 133
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=3.3e-05 Score=59.48 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=23.0
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
.+|+|+|||+|||+||++|+++|++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~ 25 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYD 25 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCc
Confidence 3799999999999999999999974
No 134
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.70 E-value=4.2e-05 Score=58.41 Aligned_cols=27 Identities=41% Similarity=0.667 Sum_probs=24.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++||+|||+|++||++|+.++++|.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~ 33 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGL 33 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCC
Confidence 457999999999999999999999885
No 135
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.70 E-value=4e-05 Score=58.20 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=24.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
...+|+|||||+|||.+|..|.+.|+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~ 31 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHE 31 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCC
Confidence 468999999999999999999999863
No 136
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.70 E-value=3.4e-05 Score=59.05 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
.++||+|||+|.|||+||+.++++|
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g 26 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLD 26 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhc
Confidence 4589999999999999999998764
No 137
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.70 E-value=4.1e-05 Score=57.02 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=22.7
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+|||+|++||++|..|+++|.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~ 24 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGA 24 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCC
Confidence 589999999999999999999986
No 138
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.69 E-value=3.9e-05 Score=62.63 Aligned_cols=26 Identities=38% Similarity=0.621 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|+|||+|||||++|++|+++|+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~ 454 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV 454 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 35799999999999999999999986
No 139
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.68 E-value=4.4e-05 Score=61.88 Aligned_cols=26 Identities=42% Similarity=0.715 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+|||||||||++|+.+++.|+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~ 187 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGA 187 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC
Confidence 45899999999999999999999886
No 140
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.68 E-value=4.8e-05 Score=57.43 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.7
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.++||+|||+| +||++|+.++++|.
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~ 30 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGL 30 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCC
Confidence 457999999999 99999999999885
No 141
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.68 E-value=4.6e-05 Score=58.70 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=23.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...||+|||+|.|||+||+.++++|.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~ 27 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGV 27 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCC
Confidence 35799999999999999999999875
No 142
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.67 E-value=4.6e-05 Score=58.80 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+|.|||+||+.+++.|.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~ 36 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGL 36 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC
Confidence 46899999999999999999998874
No 143
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.67 E-value=4.2e-05 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.1
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CC
Q 035312 45 PVLIVGAGPVGLVLSILLTKL--GI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~--G~ 67 (68)
||+|||||++|+++|+.|+++ |+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~ 25 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDF 25 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCC
Confidence 899999999999999999986 64
No 144
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.67 E-value=4.6e-05 Score=59.87 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+|||+|||||++|..|+++|+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~ 455 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGY 455 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC
Confidence 45799999999999999999999886
No 145
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.67 E-value=5.5e-05 Score=57.72 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=22.7
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
+..+||+|||||+.|+++|++|++.
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~ 67 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKF 67 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhh
Confidence 3569999999999999999999985
No 146
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.66 E-value=6.7e-05 Score=57.12 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=24.4
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.++||+|||+|.|||+||+.+++.|.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~ 40 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGR 40 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCC
Confidence 457999999999999999999998874
No 147
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.66 E-value=4.6e-05 Score=57.03 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=22.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
++||+|||+|.|||+||+.+++.|
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G 25 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQG 25 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCC
Confidence 479999999999999999999877
No 148
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.66 E-value=4.6e-05 Score=58.25 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=23.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
.++||+|||+|.|||+||+.++++|
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G 28 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERS 28 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhC
Confidence 4689999999999999999999886
No 149
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.65 E-value=4.9e-05 Score=55.47 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=21.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G 66 (68)
||+|||+|.+|+++|+.++++|
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G 22 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAG 22 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 8999999999999999999988
No 150
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.64 E-value=0.00011 Score=60.61 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=36.8
Q ss_pred eeeeeeecCCcCCccccccCC--CCCCCcccccCccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 9 RLNCFSRIKTFPYPYGYTPCR--ALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
-+..++|...+..+.+..... +.+.... .+..++||+|||+|.||++||+.++++|.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i--~~t~~~DVvVVG~G~AGl~AAi~Aae~Ga 433 (1167)
T PTZ00306 375 DYTTYTREGERVAHMFEIATEDAEMRKKRI--AGSLPARVIVVGGGLAGCSAAIEAASCGA 433 (1167)
T ss_pred eEEEEeeccchhhhhhcccccCcccccccc--ccCCCCCEEEECCCHHHHHHHHHHHHCCC
Confidence 345566665555555443222 2221111 13457999999999999999999999874
No 151
>PLN02676 polyamine oxidase
Probab=97.64 E-value=6e-05 Score=56.88 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+|||+|++||++|+.|+++|+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~ 50 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGI 50 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC
Confidence 46899999999999999999999885
No 152
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.64 E-value=5.6e-05 Score=58.23 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=23.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+|.|||+||+.+++.|.
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~ 36 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGL 36 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCC
Confidence 46899999999999999999998874
No 153
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.64 E-value=5.6e-05 Score=62.31 Aligned_cols=26 Identities=35% Similarity=0.653 Sum_probs=24.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|+|||+||+||++|+.|+++|+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~ 563 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGH 563 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 46899999999999999999999986
No 154
>PLN02507 glutathione reductase
Probab=97.64 E-value=5.8e-05 Score=56.96 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=24.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++||+|||+||+|+.+|..+++.|.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~ 49 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGA 49 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Confidence 346999999999999999999999885
No 155
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.63 E-value=5.4e-05 Score=56.45 Aligned_cols=24 Identities=46% Similarity=0.620 Sum_probs=22.5
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.||+|||+|+|||+||+.++++|.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~ 25 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGF 25 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC
Confidence 699999999999999999999875
No 156
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.63 E-value=6.2e-05 Score=55.90 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|+|||+||+||++|+.|+++|+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~ 157 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGH 157 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC
Confidence 45899999999999999999999885
No 157
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.63 E-value=5.9e-05 Score=58.53 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+|.|||+||+.++++|.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~ 53 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGY 53 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC
Confidence 46899999999999999999999874
No 158
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.62 E-value=5.9e-05 Score=58.52 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+|.|||+||+.++++|.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~ 32 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGL 32 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCC
Confidence 46899999999999999999999874
No 159
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.61 E-value=6.5e-05 Score=57.05 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+|.+||++|+.++++|.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~ 28 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGK 28 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC
Confidence 46899999999999999999999885
No 160
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.60 E-value=7.2e-05 Score=57.31 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=23.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+|.|||+||+.++++|.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~ 29 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGF 29 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCC
Confidence 46899999999999999999998874
No 161
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.60 E-value=6.1e-05 Score=58.80 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=23.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+|.|||+||+.++++|.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~ 74 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGF 74 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCC
Confidence 46899999999999999999999874
No 162
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.60 E-value=5.4e-05 Score=57.55 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=21.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G 66 (68)
+|+|||||++||++||.|++++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~ 23 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAG 23 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhC
Confidence 6899999999999999999987
No 163
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.59 E-value=7.7e-05 Score=58.05 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=24.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||||+.|+++|+.|+++|+
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl 95 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGL 95 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCC
Confidence 45899999999999999999999986
No 164
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.59 E-value=8.3e-05 Score=57.30 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=24.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.++||+|||+|.+||++|+.++++|.
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~ 35 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGL 35 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCC
Confidence 457999999999999999999999885
No 165
>PTZ00058 glutathione reductase; Provisional
Probab=97.59 E-value=0.00011 Score=56.87 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=24.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++||+|||+||+|+.+|..+++.|.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~ 72 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKA 72 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCC
Confidence 356899999999999999999999885
No 166
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.58 E-value=5.5e-05 Score=56.04 Aligned_cols=22 Identities=45% Similarity=0.724 Sum_probs=20.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCC
Q 035312 46 VLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 46 V~IVGaG~aGl~~A~~L~~~G~ 67 (68)
|+|||||++||+||..|+++|+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~ 22 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGI 22 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCC
Confidence 6899999999999999999986
No 167
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.58 E-value=6.8e-05 Score=56.34 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=21.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
||+|||||.||+.||+.+++.|.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~ 23 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGA 23 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-
T ss_pred CEEEECCCHHHHHHHHHHHHCCC
Confidence 89999999999999999999985
No 168
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.58 E-value=6.9e-05 Score=57.36 Aligned_cols=27 Identities=41% Similarity=0.538 Sum_probs=25.1
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+||+|||+|++||++|++|.+.|+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~ 31 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGY 31 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCc
Confidence 467999999999999999999999986
No 169
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.58 E-value=7.1e-05 Score=56.51 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=23.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
++||+|||+|++|++|++.|+++|.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk 26 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGK 26 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCC
Confidence 6899999999999999999999985
No 170
>PRK14727 putative mercuric reductase; Provisional
Probab=97.57 E-value=0.00011 Score=54.81 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=24.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|++|||+||+|+.+|..|++.|.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~ 40 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGA 40 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC
Confidence 456999999999999999999999885
No 171
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.57 E-value=8.5e-05 Score=54.94 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|+|||+||+||++|..|+++|+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~ 164 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGY 164 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC
Confidence 45899999999999999999999885
No 172
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.57 E-value=5.6e-05 Score=58.80 Aligned_cols=25 Identities=52% Similarity=0.771 Sum_probs=21.9
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
.+.+||+|||+|||||++|+.|.+.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQl 98 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQL 98 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHH
Confidence 4569999999999999999988653
No 173
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.57 E-value=8.4e-05 Score=56.38 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=22.6
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+|||||++|+.+|+.|+++|+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~ 24 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV 24 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC
Confidence 489999999999999999999986
No 174
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.56 E-value=6.7e-05 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
.++||+|||+|.|||+||+.++++|
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g 27 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEAN 27 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 175
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.56 E-value=6.8e-05 Score=55.30 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.7
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
.+|+|||+|++||+||+.|+..|++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~ 26 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGRE 26 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcE
Confidence 4799999999999999999999863
No 176
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.56 E-value=8.8e-05 Score=55.31 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|+|||+||+||++|..|+++|+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~ 167 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGH 167 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC
Confidence 45799999999999999999999886
No 177
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.56 E-value=8.7e-05 Score=57.24 Aligned_cols=26 Identities=19% Similarity=0.463 Sum_probs=23.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+|.|||+||+.++++|.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~ 31 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQ 31 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC
Confidence 46899999999999999999998874
No 178
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.56 E-value=5.4e-05 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.6
Q ss_pred cCEEEECCCHHHHHHHHHHHHCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
||++|||+|++|..+|..|+++|
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~ 23 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAG 23 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTST
T ss_pred CCEEEECcCHHHHHHHHHHhhCC
Confidence 69999999999999999999876
No 179
>PLN02568 polyamine oxidase
Probab=97.56 E-value=8.3e-05 Score=57.09 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
+..||+|||+|++||++|..|++.|
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g 28 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSS 28 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcc
Confidence 3579999999999999999999877
No 180
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.55 E-value=8.6e-05 Score=55.10 Aligned_cols=24 Identities=42% Similarity=0.654 Sum_probs=22.2
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+|||||++|+++|..|++.|.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~ 25 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNK 25 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC
Confidence 699999999999999999998774
No 181
>PRK08275 putative oxidoreductase; Provisional
Probab=97.55 E-value=7e-05 Score=57.01 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
..++||+|||+|.|||+||+.++++
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~ 31 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKER 31 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHh
Confidence 3568999999999999999999876
No 182
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.55 E-value=7.5e-05 Score=57.78 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=22.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
.++||+|||+|.|||+||+.++++
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~ 33 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEW 33 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHh
Confidence 468999999999999999999987
No 183
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.55 E-value=8.6e-05 Score=58.13 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+|.|||+||+.++++|.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~ 29 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGL 29 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCC
Confidence 46899999999999999999999875
No 184
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.53 E-value=8.7e-05 Score=56.29 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=21.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
||+|||+|++||+||+.++++|.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~ 23 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGL 23 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCC
Confidence 89999999999999999999874
No 185
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.52 E-value=0.00011 Score=53.29 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|++|+.+|..|+++|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~ 27 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGF 27 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCC
Confidence 4689999999999999999998874
No 186
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.52 E-value=8.1e-05 Score=56.55 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.4
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
+.++||+|||||+.|+++|++|++.
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~ 27 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKEL 27 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHh
Confidence 3468999999999999999999874
No 187
>PLN02612 phytoene desaturase
Probab=97.50 E-value=0.00015 Score=55.72 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=24.3
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....+|+|||+|++||++|++|+++|+
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~ 117 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGH 117 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCC
Confidence 345899999999999999999999885
No 188
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.50 E-value=0.0001 Score=55.78 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=20.8
Q ss_pred cCEEEECCCHHHHHHHHHHHHC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
+||+|||||++|+++|++|++.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~ 22 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLREL 22 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHh
Confidence 5999999999999999999985
No 189
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.49 E-value=0.00012 Score=54.81 Aligned_cols=26 Identities=35% Similarity=0.661 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||+||+||++|..|+++|+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~ 165 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV 165 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 45799999999999999999999886
No 190
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.49 E-value=0.00011 Score=55.80 Aligned_cols=25 Identities=44% Similarity=0.664 Sum_probs=23.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||||++||++|..|+++|+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~ 26 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGI 26 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCC
Confidence 4689999999999999999999997
No 191
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.48 E-value=0.00015 Score=55.53 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=24.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.++||+|||+|.+|+++|+.++++|.
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~G~ 30 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADSGL 30 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC
Confidence 357999999999999999999999885
No 192
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.47 E-value=0.00014 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=23.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
++||+|||+|++|+++|+.|+++|.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~ 26 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGK 26 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCC
Confidence 5899999999999999999999885
No 193
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.46 E-value=0.00016 Score=55.26 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=24.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+|++|+++|+.++++|.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~ 31 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGL 31 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC
Confidence 46899999999999999999999885
No 194
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.45 E-value=0.00014 Score=54.70 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=23.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
++|++|||+||+|+.+|+.+++.|.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~ 26 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGA 26 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Confidence 4899999999999999999999875
No 195
>PLN02546 glutathione reductase
Probab=97.44 E-value=0.00015 Score=55.99 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||+||+|+.+|..+++.|.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~ 103 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGA 103 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC
Confidence 35899999999999999999999885
No 196
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.42 E-value=0.00016 Score=56.38 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=23.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|+|||+||+||++|+.|++.|+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~ 217 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH 217 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 45799999999999999999999886
No 197
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.41 E-value=0.00015 Score=55.62 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.9
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..++||+|||+|.|||+||+.+++ |
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G 31 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-H 31 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-C
Confidence 457999999999999999999863 5
No 198
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.40 E-value=0.00017 Score=54.68 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=22.7
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++||+|||+|.|||+||+.+ +.|.
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~ 30 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGK 30 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCC
Confidence 3568999999999999999999 7664
No 199
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.39 E-value=0.00019 Score=53.84 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|+|||+|++||++|+.|+++|+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~ 23 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGH 23 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC
Confidence 58999999999999999999886
No 200
>PLN02529 lysine-specific histone demethylase 1
Probab=97.39 E-value=0.00028 Score=56.48 Aligned_cols=27 Identities=37% Similarity=0.507 Sum_probs=24.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+||+|||+|++||++|..|+++|+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~ 184 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGF 184 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCC
Confidence 356899999999999999999999986
No 201
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.37 E-value=0.00019 Score=55.63 Aligned_cols=26 Identities=35% Similarity=0.632 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|+|||+||+||++|..|++.|+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~ 334 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV 334 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC
Confidence 46899999999999999999999886
No 202
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.37 E-value=0.00019 Score=54.61 Aligned_cols=25 Identities=40% Similarity=0.654 Sum_probs=22.0
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
+.++||+|||+|.|||++|+.+++.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~ 30 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH 30 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC
Confidence 3568999999999999999999764
No 203
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.36 E-value=0.00016 Score=55.83 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
++||+|||+|.|||+||+.++++|
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g 26 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEAN 26 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhC
Confidence 589999999999999999998763
No 204
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.36 E-value=0.0002 Score=57.60 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=24.2
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++||+|||+|.|||++|+.++++|.
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~ 37 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGA 37 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCC
Confidence 456899999999999999999998874
No 205
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.35 E-value=0.00034 Score=53.70 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=24.9
Q ss_pred CccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 40 NEAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 40 ~~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+.++||+|||+|++|+++|+.++++|.
T Consensus 13 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~ 40 (578)
T PRK12843 13 WDAEFDVIVIGAGAAGMSAALFAAIAGL 40 (578)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCC
Confidence 3457899999999999999999998875
No 206
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.35 E-value=0.00022 Score=54.29 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||+||+||++|+.|++.|+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~ 161 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH 161 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 45789999999999999999999885
No 207
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.33 E-value=0.00023 Score=53.80 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKL-GI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~-G~ 67 (68)
.++||+|||+||+|..+|..+++. |.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~ 28 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKK 28 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCC
Confidence 469999999999999999999986 64
No 208
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.33 E-value=0.00026 Score=53.86 Aligned_cols=27 Identities=37% Similarity=0.674 Sum_probs=24.7
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.++|++|||+||+|..+|..+++.|.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~ 28 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGL 28 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCC
Confidence 357999999999999999999999985
No 209
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.31 E-value=0.00026 Score=55.57 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
+..+++|||||++||++|+.|.+.|
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg 45 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDG 45 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcc
Confidence 4589999999999999999999864
No 210
>PRK12839 hypothetical protein; Provisional
Probab=97.31 E-value=0.00031 Score=54.11 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=24.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++||+|||+|.+|+++|+.++++|.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~ 32 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGA 32 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC
Confidence 457999999999999999999999875
No 211
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.30 E-value=0.00021 Score=56.58 Aligned_cols=21 Identities=33% Similarity=0.819 Sum_probs=20.1
Q ss_pred CEEEECCCHHHHHHHHHHHHC
Q 035312 45 PVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~ 65 (68)
+|+||||||+||++|+.|+++
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~ 22 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLL 22 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHh
Confidence 699999999999999999987
No 212
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.30 E-value=0.00025 Score=54.34 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.6
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
...+||+|||||++|+++|++|++.
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~ 28 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKEL 28 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhC
Confidence 3568999999999999999999986
No 213
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.30 E-value=0.00022 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHH
Q 035312 43 VVPVLIVGAGPVGLVLSILLTK 64 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~ 64 (68)
++||+|||+|.|||+||+.+++
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~ 24 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH 24 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc
Confidence 5899999999999999999865
No 214
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.29 E-value=0.00024 Score=54.56 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=21.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHHC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
.++||+|||+|.|||+||+.+++.
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~ 27 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR 27 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC
Confidence 358999999999999999999764
No 215
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00019 Score=54.94 Aligned_cols=27 Identities=37% Similarity=0.673 Sum_probs=24.8
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+||+|||+||+|-++|++.+|+|+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGi 235 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGI 235 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcc
Confidence 346999999999999999999999986
No 216
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.27 E-value=0.00026 Score=53.75 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=23.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..+||+|||||+.|+++|++|++.+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~ 26 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYE 26 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhC
Confidence 4689999999999999999999875
No 217
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.27 E-value=0.00025 Score=53.52 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=24.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+++||+|||+|++|+.+|..|+++|.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~Gk 28 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGK 28 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCC
Confidence 56999999999999999999999985
No 218
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.26 E-value=0.00033 Score=52.73 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||+|++|+++|..|+++|+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~ 167 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGH 167 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC
Confidence 34799999999999999999999885
No 219
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.26 E-value=0.00032 Score=55.32 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=23.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
++||+|||+||+|..+|..+++.|.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~ 140 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGL 140 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC
Confidence 6899999999999999999999885
No 220
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.25 E-value=0.00033 Score=54.41 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++||+|||+|.|||.+|+.+++.|+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~ 30 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGL 30 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCC
Confidence 356999999999999999999999874
No 221
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.24 E-value=0.0003 Score=52.25 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=20.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
.++||+|||+|.|||+||+.++ +|
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G 26 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KD 26 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cC
Confidence 3589999999999999999974 45
No 222
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.23 E-value=0.0004 Score=53.34 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=24.7
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.++||+|||+|++|+++|+.++++|.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~ 36 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGL 36 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCC
Confidence 457999999999999999999999875
No 223
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.21 E-value=0.00044 Score=55.95 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=24.4
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....+|+|||+|++||++|+.|++.|+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~ 262 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGF 262 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC
Confidence 356899999999999999999999886
No 224
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.19 E-value=0.00049 Score=49.17 Aligned_cols=26 Identities=42% Similarity=0.583 Sum_probs=23.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||+|++|+.+|..|++.|+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~ 42 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGY 42 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC
Confidence 34789999999999999999999875
No 225
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.18 E-value=0.00038 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.6
Q ss_pred CEEEECCCHHHHHHHHHHH----HCCC
Q 035312 45 PVLIVGAGPVGLVLSILLT----KLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~----~~G~ 67 (68)
||+|||+|.|||+||+.++ ++|.
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~ 27 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGL 27 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCC
Confidence 8999999999999999998 5563
No 226
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.16 E-value=0.00036 Score=53.65 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=19.2
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
++|+|||||++||++|..|.+.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~ 25 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGL 25 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-
T ss_pred CEEEEECccHHHHHHHHHHHHCCC
Confidence 589999999999999999999886
No 227
>PRK02106 choline dehydrogenase; Validated
Probab=97.14 E-value=0.00051 Score=52.20 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHH-CCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTK-LGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~-~G~ 67 (68)
.++|++|||+|.+|+.+|..|++ .|+
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~ 30 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDV 30 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCC
Confidence 45899999999999999999999 564
No 228
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.13 E-value=0.00034 Score=52.80 Aligned_cols=27 Identities=41% Similarity=0.443 Sum_probs=24.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....||+|||||.-|+++||+|+++|.
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~ 31 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGD 31 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCC
Confidence 456899999999999999999999984
No 229
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.12 E-value=0.0005 Score=53.36 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=22.6
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+|||+||+|+.+|+.|+++|+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~ 24 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGL 24 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCC
Confidence 699999999999999999999885
No 230
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.11 E-value=0.00061 Score=52.51 Aligned_cols=26 Identities=31% Similarity=0.727 Sum_probs=23.7
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.++||+|||+| +|+++|+.+++.|.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~ 39 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGL 39 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCC
Confidence 458999999999 89999999999885
No 231
>PLN02487 zeta-carotene desaturase
Probab=97.10 E-value=0.00056 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=23.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|++||++|+.|+++|+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~ 99 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGH 99 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC
Confidence 3599999999999999999999886
No 232
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.08 E-value=0.00084 Score=52.06 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=21.2
Q ss_pred cccCEEEECCCHHHHHHHHHHH-HCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLT-KLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~-~~G~ 67 (68)
....|+|||+|||||.+|..|. +.|+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~ 64 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV 64 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC
Confidence 4578999999999999999654 5554
No 233
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.06 E-value=0.00063 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=21.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|+|||+||+|+++|..+++.|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~ 24 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGK 24 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC
Confidence 79999999999999999999885
No 234
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.06 E-value=0.00064 Score=52.72 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||||+|||+||..|-++|.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf 45 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGF 45 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCC
Confidence 34689999999999999999987775
No 235
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.06 E-value=0.00092 Score=38.60 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=21.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|+|||+|+.|+-+|..|++.|.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~ 23 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK 23 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc
Confidence 48999999999999999998874
No 236
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.05 E-value=0.00059 Score=51.95 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||+||+||++|..|++.|+
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~ 147 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGH 147 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCC
Confidence 34899999999999999999999986
No 237
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.03 E-value=0.00044 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHH
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTK 64 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~ 64 (68)
.++||+|||+|.|||+||+.++.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa~ 30 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLAP 30 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhCc
Confidence 46899999999999999999863
No 238
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.03 E-value=0.00059 Score=49.70 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=20.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G 66 (68)
+|+|||+|++|+++|..|++.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~ 23 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN 23 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC
Confidence 6999999999999999998865
No 239
>PRK13984 putative oxidoreductase; Provisional
Probab=97.03 E-value=0.00075 Score=51.62 Aligned_cols=26 Identities=38% Similarity=0.653 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||+|++|+++|..|+++|+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~ 307 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGY 307 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC
Confidence 45789999999999999999999986
No 240
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.02 E-value=0.00067 Score=53.38 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=24.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+++|||||++|+.+|+.|++.|+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~ 148 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGF 148 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCC
Confidence 45789999999999999999999987
No 241
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.99 E-value=0.00082 Score=50.88 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=22.2
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+|||+|++|+++|+.|+++|.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~ 24 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGK 24 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCC
Confidence 589999999999999999998874
No 242
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.98 E-value=0.00071 Score=52.25 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.4
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
....+|+|||||++||++||+|++++
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~ 34 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLG 34 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcC
Confidence 34689999999999999999999975
No 243
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.89 E-value=0.0012 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.7
Q ss_pred cCEEEECCCHHHHHHHHHHHHCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
+||+|||+|++|+.+|..|.+.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~ 25 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQD 25 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhC
Confidence 58999999999999999998753
No 244
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.88 E-value=0.0011 Score=52.48 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=22.4
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+||+|||+|++|+.+|..+++.|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~ 24 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGA 24 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC
Confidence 699999999999999999999875
No 245
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.86 E-value=0.00085 Score=50.37 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=18.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G 66 (68)
||+|||+|+||..+|..|++.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~ 22 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAG 22 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHC
T ss_pred CEEEECCCHHHHHHHHHHHHhC
Confidence 7999999999999999999876
No 246
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.82 E-value=0.0014 Score=48.73 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=22.2
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.|++|||+|++|+.+|..++++|.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~ 25 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGA 25 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC
Confidence 489999999999999999999875
No 247
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.78 E-value=0.0012 Score=51.28 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCC
Q 035312 46 VLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 46 V~IVGaG~aGl~~A~~L~~~G~ 67 (68)
|+|||+|.|||+||+.+++.|.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~ 22 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGY 22 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCC
Confidence 6899999999999999999875
No 248
>PRK09897 hypothetical protein; Provisional
Probab=96.77 E-value=0.0014 Score=50.75 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred cCEEEECCCHHHHHHHHHHHHCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
++|+|||+||+|+++|..|.+.+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~ 24 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQ 24 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcC
Confidence 58999999999999999998753
No 249
>PLN02785 Protein HOTHEAD
Probab=96.67 E-value=0.0025 Score=49.52 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.3
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
...+|++|||+|.+|+.+|..|+++
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~~ 77 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQN 77 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhcC
Confidence 4569999999999999999999873
No 250
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.66 E-value=0.0012 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
...+|+|||+|.+||+||+.|+++
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r 30 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR 30 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc
Confidence 457899999999999999999875
No 251
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.65 E-value=0.0021 Score=49.31 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=24.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+.||+|||+|.+||.+|.+|+.+|.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~ 29 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGK 29 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCc
Confidence 356899999999999999999999885
No 252
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.62 E-value=0.0019 Score=47.63 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.7
Q ss_pred CEEEECCCHHHHHHHHHHHHC
Q 035312 45 PVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~ 65 (68)
+|+|||||++|+.+|..|++.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~ 23 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL 23 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh
Confidence 799999999999999999875
No 253
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.59 E-value=0.0025 Score=49.70 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=25.0
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+..+||+|||||+.|+.+|..++.+|+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl 36 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGL 36 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCC
Confidence 367999999999999999999999986
No 254
>PLN03000 amine oxidase
Probab=96.57 E-value=0.0027 Score=52.03 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=23.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...||+|||+|++||.+|..|++.|+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~ 208 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGF 208 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCC
Confidence 45899999999999999999999875
No 255
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.55 E-value=0.0019 Score=48.79 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=21.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G 66 (68)
|++|||+|.+|+.+|..|++.|
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~ 22 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDV 22 (532)
T ss_pred CEEEECCCchHHHHHHHhccCC
Confidence 8999999999999999999886
No 256
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=0.003 Score=50.08 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=23.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+||+|||||.||+.||+..+|.|.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ 28 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGA 28 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCC
Confidence 35999999999999999999999884
No 257
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.27 E-value=0.004 Score=45.81 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=21.7
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
...++|+|||||.+|+.+|..|.+.+
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~ 33 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKK 33 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCC
Confidence 35679999999999999998886543
No 258
>PLN02976 amine oxidase
Probab=96.26 E-value=0.0052 Score=53.21 Aligned_cols=26 Identities=35% Similarity=0.641 Sum_probs=23.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...||+|||+|++|+.+|+.|++.|+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~ 717 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGF 717 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCC
Confidence 35899999999999999999999885
No 259
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.24 E-value=0.0037 Score=48.03 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.9
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|++|||+|.+|..+|..|++.|+
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~ 31 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGL 31 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCC
Confidence 357999999999999999999997664
No 260
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.23 E-value=0.0051 Score=47.21 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.3
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
+.+.||+|||+|..|.+.|++|+++
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer 108 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKER 108 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHH
Confidence 3578999999999999999999764
No 261
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.13 E-value=0.0065 Score=45.74 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=22.1
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|++|||+|++|+.+|..|++.|.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk 25 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGK 25 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCC
Confidence 799999999999999999988774
No 262
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.13 E-value=0.0049 Score=47.60 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=24.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++|++|||+||.|..+|+..++.|+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGl 63 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGL 63 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcc
Confidence 57999999999999999999999886
No 263
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.12 E-value=0.00024 Score=51.59 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
..||+|||+|-+||++||+.+++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~ 98 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKN 98 (328)
T ss_pred ccceEEECCCccccceeeeeecc
Confidence 47999999999999999988754
No 264
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.09 E-value=0.0035 Score=48.91 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.5
Q ss_pred CEEEECCCHHHHHHHHHHHHC
Q 035312 45 PVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~ 65 (68)
||+|||+|.|||++|+.|++.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~ 29 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS 29 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC
Confidence 999999999999999999764
No 265
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.97 E-value=0.0095 Score=41.63 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=23.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+.+|..|+++|+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~ 160 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGK 160 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC
Confidence 3799999999999999999999985
No 266
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.87 E-value=0.0074 Score=44.86 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=17.0
Q ss_pred ccCEEEECCCHHHHHHHHHH
Q 035312 43 VVPVLIVGAGPVGLVLSILL 62 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L 62 (68)
++|++|||+||+|..+|..+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~ 21 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF 21 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH
Confidence 58999999999998886543
No 267
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=0.009 Score=46.23 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred cCEEEECCCHHHHHHHHHHHHC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
++|+|||+|++|+.+|.+|.+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~ 23 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKS 23 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhC
Confidence 6899999999999999999765
No 268
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.77 E-value=0.0066 Score=44.21 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=18.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHHC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
.+|+++||.||++|++|..|...
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~ 24 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEH 24 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhc
Confidence 48999999999999999998764
No 269
>PRK07846 mycothione reductase; Reviewed
Probab=95.77 E-value=0.0096 Score=44.32 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.3
Q ss_pred ccCEEEECCCHHHHHHHHHH
Q 035312 43 VVPVLIVGAGPVGLVLSILL 62 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L 62 (68)
++|++|||+||+|..+|...
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~ 20 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF 20 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH
Confidence 38999999999999888653
No 270
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=95.67 E-value=0.018 Score=46.89 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=24.7
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....||+|||||..|..+||.|++.|+
T Consensus 37 ~~~A~vvViggG~~g~~~~yhlak~g~ 63 (856)
T KOG2844|consen 37 PSTADVVVIGGGSLGCSTAYHLAKRGM 63 (856)
T ss_pred CCcccEEEEcCCchhHHHHHHHHHccc
Confidence 456899999999999999999999986
No 271
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.62 E-value=0.01 Score=42.10 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=18.3
Q ss_pred CEEEECCCHHHHHHHHHHHHC
Q 035312 45 PVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~ 65 (68)
+|+|||||++|+.+|..|.++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~ 21 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMK 21 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCc
Confidence 589999999999999988643
No 272
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.011 Score=46.79 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=23.8
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+||+|||||-||..+|...+|-|-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga 52 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGA 52 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCC
Confidence 457999999999999999999988763
No 273
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.012 Score=45.24 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=20.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHHC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
....|+|||+||||+-+|..|.++
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~ 42 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKR 42 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhc
Confidence 346999999999999999988764
No 274
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.017 Score=42.95 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|++|+.+|..|+++|+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~ 40 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGA 40 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC
Confidence 4689999999999999999999885
No 275
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.52 E-value=0.016 Score=42.62 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.|+|||.|++|+++|..|+++|+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~ 24 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW 24 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC
Confidence 58999999999999999999986
No 276
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.33 E-value=0.017 Score=37.34 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=20.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
...+|+|||+|.++.-+|..|++.|
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g 190 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAG 190 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTC
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhC
Confidence 4588999999999999999998876
No 277
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.31 E-value=0.014 Score=50.26 Aligned_cols=26 Identities=38% Similarity=0.541 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|+|||+||+||+||-.|.+.|+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh 1809 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGH 1809 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCc
Confidence 45899999999999999999999886
No 278
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=95.15 E-value=0.016 Score=44.14 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
..++|.+|||+|+.|++.|.+|.-+
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lr 70 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLR 70 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhc
Confidence 4579999999999999999988543
No 279
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.01 E-value=0.0072 Score=45.32 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|+|||||+.|+.+||+|++.+-
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~s 34 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPS 34 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCc
Confidence 34899999999999999999998763
No 280
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.98 E-value=0.029 Score=45.54 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.9
Q ss_pred cCEEEECCCHHHHHHHHHHHHC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
.+|+|||+|++|+.+|..|.++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~ 25 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDK 25 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhh
Confidence 5899999999999999998764
No 281
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=94.82 E-value=0.029 Score=44.09 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=24.4
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|++|||+|.-||.+|.+|+|.|.
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~ 38 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQ 38 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCc
Confidence 357999999999999999999999874
No 282
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.73 E-value=0.045 Score=35.37 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.|+|+|+|-.|.++|..|+++|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~ 23 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH 23 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC
Confidence 48999999999999999999984
No 283
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.71 E-value=0.025 Score=43.12 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=23.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...|-|||+|+||--+|+.++++|+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv 27 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGV 27 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCC
Confidence 4678999999999999999999997
No 284
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.57 E-value=0.033 Score=37.41 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=19.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|+|||.|..||.+|..|+++|+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~ 24 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH 24 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS
T ss_pred EEEEECCCcchHHHHHHHHhCCC
Confidence 58999999999999999999986
No 285
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.57 E-value=0.063 Score=33.61 Aligned_cols=22 Identities=36% Similarity=0.711 Sum_probs=20.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCC
Q 035312 46 VLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 46 V~IVGaG~aGl~~A~~L~~~G~ 67 (68)
|+|+|+|-.|...|..|++.|.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~ 22 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH 22 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC
T ss_pred CEEECcCHHHHHHHHHHHHCCC
Confidence 6899999999999999998875
No 286
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.45 E-value=0.034 Score=44.47 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.5
Q ss_pred EEEECCCHHHHHHHHHHHHCC
Q 035312 46 VLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 46 V~IVGaG~aGl~~A~~L~~~G 66 (68)
|+|||+|++|+.+|..|.+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~ 21 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN 21 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC
Confidence 689999999999999887653
No 287
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.45 E-value=0.052 Score=38.98 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|+.|+.+|..|++.|.
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~ 165 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGK 165 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCC
Confidence 4689999999999999999998774
No 288
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.32 E-value=0.049 Score=41.30 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHHC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
..++|+|||||.+|+.+|..|.++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~ 25 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARK 25 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhc
Confidence 357899999999999999999876
No 289
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.25 E-value=0.065 Score=38.90 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=22.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|+.|+.+|..|++.|.
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~ 168 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRC 168 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 4689999999999999999998875
No 290
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.21 E-value=0.064 Score=39.33 Aligned_cols=26 Identities=50% Similarity=0.686 Sum_probs=23.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|+|+|..|+.+|..|+++|.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~ 29 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA 29 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 35789999999999999999999986
No 291
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.041 Score=42.36 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.9
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|.+|||+|-.||+||-+.+..|.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~ 43 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGA 43 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCC
Confidence 356999999999999999999988773
No 292
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.18 E-value=0.062 Score=39.93 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=22.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|++|+.+|..|++.|.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~ 204 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGV 204 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC
Confidence 4689999999999999999998774
No 293
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.14 E-value=0.067 Score=39.23 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|++|+.+|..|++.|.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~ 181 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGS 181 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 4689999999999999999998774
No 294
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.02 E-value=0.075 Score=38.71 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|++|+.+|..|++.|.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~ 161 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGK 161 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC
Confidence 3689999999999999999998774
No 295
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.01 E-value=0.058 Score=42.01 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHHC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
+++||++||||+.+.++++.|++.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l 25 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKEL 25 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHh
Confidence 469999999999999999999763
No 296
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.055 Score=39.70 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..+|+|||+||++-.+|+++++.-
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaarae 31 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAE 31 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcc
Confidence 458999999999999999999864
No 297
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.95 E-value=0.078 Score=38.92 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=22.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|++|+.+|..|++.|.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~ 194 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGS 194 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 4689999999999999999998774
No 298
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.83 E-value=0.12 Score=32.80 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+++|+|+|-+|-.+++.|++.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~ 36 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA 36 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999875
No 299
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.76 E-value=0.036 Score=41.09 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.3
Q ss_pred CEEEECCCHHHHHHHHHHHHC
Q 035312 45 PVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~ 65 (68)
..+|||||+||.+||-.|+..
T Consensus 1 kfivvgggiagvscaeqla~~ 21 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQL 21 (334)
T ss_pred CeEEEcCccccccHHHHHHhh
Confidence 368999999999999998753
No 300
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=93.74 E-value=0.046 Score=40.84 Aligned_cols=24 Identities=25% Similarity=0.546 Sum_probs=20.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHHC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
+..+|+|||+|..||++|+.+.+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~ 25 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILEL 25 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHh
Confidence 347899999999999999877663
No 301
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.58 E-value=0.1 Score=38.68 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=22.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|++|+.+|..|++.|.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~ 194 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGT 194 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC
Confidence 4689999999999999999988774
No 302
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.55 E-value=0.089 Score=32.94 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.+|+|+|+|-.|...|..|++.|+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv 26 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV 26 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC
Confidence 4689999999999999999999886
No 303
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.55 E-value=0.1 Score=38.55 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=22.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|++|+.+|..|++.|.
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~ 190 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGS 190 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 3789999999999999999998874
No 304
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=93.41 E-value=0.08 Score=42.32 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=22.5
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
...+|.+|||||-||..+|-.|++.
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn 79 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSEN 79 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccC
Confidence 4679999999999999999998875
No 305
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.37 E-value=0.11 Score=38.33 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=22.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|++|+.+|..|++.|.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~ 196 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGA 196 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 3689999999999999999998875
No 306
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.34 E-value=0.12 Score=35.84 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|+|+|+|..|...|..|+++|.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~ 24 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR 24 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC
Confidence 58999999999999999999885
No 307
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.17 E-value=0.13 Score=34.25 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.|.|||+|..|...|..+++.|+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~ 23 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY 23 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC
Confidence 48999999999999999999886
No 308
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=93.11 E-value=0.14 Score=37.65 Aligned_cols=26 Identities=31% Similarity=0.634 Sum_probs=22.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+++|||+|+.|+.+|..|++.|.
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~ 193 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGV 193 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 34789999999999999999998774
No 309
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=93.04 E-value=0.14 Score=37.37 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|++|+.+|..|.+.|.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~ 173 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGK 173 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC
Confidence 4689999999999999999988764
No 310
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.04 E-value=0.15 Score=36.55 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|-.|..+|..|++.|+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV 54 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI 54 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC
Confidence 45899999999999999999999985
No 311
>PRK06370 mercuric reductase; Validated
Probab=93.03 E-value=0.13 Score=38.04 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=22.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|+.|+.+|..|++.|.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~ 195 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGS 195 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC
Confidence 4789999999999999999998874
No 312
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.99 E-value=0.13 Score=36.85 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=21.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|.|||+|..|.++|+.|+++|+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~ 24 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGL 24 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC
Confidence 58999999999999999999884
No 313
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.97 E-value=0.14 Score=37.68 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=22.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+.+|..|++.|.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~ 199 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGV 199 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 4789999999999999999998874
No 314
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.85 E-value=0.17 Score=32.47 Aligned_cols=23 Identities=48% Similarity=0.827 Sum_probs=20.9
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGA-GPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGa-G~aGl~~A~~L~~~G~ 67 (68)
+|+|||+ |..|-++|+.|..+++
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l 25 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGL 25 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTT
T ss_pred EEEEECCCChHHHHHHHHHHhCCC
Confidence 5899999 9999999999988765
No 315
>PRK07846 mycothione reductase; Reviewed
Probab=92.85 E-value=0.15 Score=38.06 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=22.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+.+|..|++.|.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~ 190 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGV 190 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 4789999999999999999998774
No 316
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.80 E-value=0.18 Score=34.34 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||+|-.|...|..|++.|+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gv 45 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGI 45 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC
Confidence 45889999999999999999999986
No 317
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=92.79 E-value=0.14 Score=37.76 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=22.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+-+|..|++.|.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~ 172 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGL 172 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC
Confidence 3689999999999999999998874
No 318
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.79 E-value=0.15 Score=34.47 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..+|+|||+|++|+-+|..|++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~ 164 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIA 164 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhc
Confidence 468999999999999999998765
No 319
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.70 E-value=0.15 Score=37.90 Aligned_cols=25 Identities=28% Similarity=0.683 Sum_probs=22.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|+.|+.+|..|++.|.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~ 196 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGV 196 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC
Confidence 4689999999999999999998874
No 320
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=92.65 E-value=0.17 Score=36.21 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|+.|+-+|..|.+.|.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~ 196 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGA 196 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC
Confidence 3689999999999999999887764
No 321
>PRK14694 putative mercuric reductase; Provisional
Probab=92.61 E-value=0.16 Score=37.73 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+.+|..|++.|.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~ 202 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGS 202 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 4689999999999999999998774
No 322
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.60 E-value=0.18 Score=37.58 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=22.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|+.|+.+|..+++.|.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~ 198 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGA 198 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 4789999999999999999998774
No 323
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.53 E-value=0.17 Score=37.82 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=22.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+.+|..|++.|.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~ 198 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGS 198 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 3689999999999999999998774
No 324
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.53 E-value=0.15 Score=36.88 Aligned_cols=23 Identities=48% Similarity=0.830 Sum_probs=19.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.|+|+|+||.||.++..++..|.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga 193 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA 193 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC
Confidence 59999999999999777776653
No 325
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.39 E-value=0.21 Score=35.44 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=22.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|-.|...|..|++.|+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~ 29 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF 29 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC
Confidence 3579999999999999999999875
No 326
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.36 E-value=0.19 Score=37.38 Aligned_cols=25 Identities=40% Similarity=0.507 Sum_probs=22.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|..|+-+|..|++.|.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~ 190 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGS 190 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 4689999999999999999998774
No 327
>PRK13748 putative mercuric reductase; Provisional
Probab=92.33 E-value=0.2 Score=37.87 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+-+|..|++.|.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~ 294 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGS 294 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 4689999999999999999998774
No 328
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=92.27 E-value=0.12 Score=39.17 Aligned_cols=21 Identities=38% Similarity=0.724 Sum_probs=18.9
Q ss_pred cCEEEECCCHHHHHHHHHHHH
Q 035312 44 VPVLIVGAGPVGLVLSILLTK 64 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~ 64 (68)
.+++|||||++|+-+|-+|+.
T Consensus 156 lti~IvGgG~TGVElAgeL~~ 176 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAE 176 (405)
T ss_pred eEEEEECCChhHHHHHHHHHH
Confidence 479999999999999998865
No 329
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.23 E-value=0.22 Score=34.78 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+.+|+|||+|-.|..+|..|++.|+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gv 56 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGV 56 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 45899999999999999999999986
No 330
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.18 E-value=0.19 Score=35.64 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=21.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|.|||+|..|...|..|+++|+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~ 26 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH 26 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC
Confidence 69999999999999999999885
No 331
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.11 E-value=0.18 Score=40.34 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=22.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+-+|..|++.|.
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~ 164 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGM 164 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCC
Confidence 3689999999999999999998875
No 332
>PRK06116 glutathione reductase; Validated
Probab=92.11 E-value=0.22 Score=36.64 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|+.|+.+|..|++.|.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~ 191 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGS 191 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 4689999999999999999988764
No 333
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.10 E-value=0.22 Score=36.04 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+..|+|||+|..|-++|+.|...|+
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~ 27 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGL 27 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC
Confidence 4689999999999999999988765
No 334
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.06 E-value=0.23 Score=32.35 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=21.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|+|+|.+|..|+..|.+.|.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa 44 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGA 44 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCC
Confidence 45899999999999999999988775
No 335
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.04 E-value=0.3 Score=38.02 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=21.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
...+|+|+|+|++|+.++..++..|
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG 188 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG 188 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC
Confidence 4578999999999999988888776
No 336
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.04 E-value=0.18 Score=38.15 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..+|+|||+|+.|+-+|..|++.|
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g 375 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIV 375 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcC
Confidence 468999999999999999998765
No 337
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.03 E-value=0.24 Score=34.51 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||+|-.|..+|..|++.|+
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gv 48 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGV 48 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC
Confidence 45899999999999999999999986
No 338
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.02 E-value=0.032 Score=44.65 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.++||+|||||-+|--||+-.+-+|+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGL 91 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGL 91 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccc
Confidence 45999999999999999988877764
No 339
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=92.00 E-value=0.23 Score=37.01 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+.+|..|++.|.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~ 193 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGT 193 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC
Confidence 4689999999999999999998774
No 340
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.98 E-value=0.26 Score=33.72 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+.+|+|||+|-.|...|..|++.|+
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv 45 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV 45 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 45899999999999999999999986
No 341
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.98 E-value=0.24 Score=33.78 Aligned_cols=26 Identities=42% Similarity=0.500 Sum_probs=22.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|.+|..-+..|.+.|.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga 33 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA 33 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC
Confidence 35789999999999999999988773
No 342
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.96 E-value=0.22 Score=34.85 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.8
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..|+|||+|..|...|..|+++|+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~ 27 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF 27 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC
Confidence 469999999999999999999885
No 343
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=91.87 E-value=0.16 Score=39.76 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
+++.-|||+|+|+|++|.+|-|.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa 25 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDA 25 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccC
Confidence 467889999999999999997765
No 344
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.85 E-value=0.24 Score=33.04 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=22.8
Q ss_pred ccccCEEEECCCH-HHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGP-VGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~-aGl~~A~~L~~~G~ 67 (68)
-..++|+|||+|- +|..+|..|.++|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~ 69 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA 69 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC
Confidence 3568999999995 79999999988874
No 345
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.82 E-value=0.25 Score=35.72 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.|.|||+|..|.++|+.|..+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~ 23 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGL 23 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCC
Confidence 48999999999999999988775
No 346
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.81 E-value=0.23 Score=34.20 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+++|||+|..|...|-.|.++|+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~ 24 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH 24 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC
Confidence 68999999999999999999985
No 347
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.81 E-value=0.24 Score=36.95 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|..|+-+|..|.+.|.
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~ 296 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGA 296 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 4689999999999999999998874
No 348
>PRK12831 putative oxidoreductase; Provisional
Probab=91.80 E-value=0.24 Score=37.26 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||+|..|+-+|..|.+.|.
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga 305 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGA 305 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCC
Confidence 34799999999999999999998874
No 349
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.71 E-value=0.29 Score=33.48 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|-.|...|..|++.|+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gv 52 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGV 52 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCC
Confidence 45899999999999999999999986
No 350
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.69 E-value=0.11 Score=36.95 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=23.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|+|+|-+|-++++.|++.|+
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~ 151 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGV 151 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCC
Confidence 34789999999999999999998885
No 351
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.65 E-value=0.25 Score=37.39 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=22.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...|+|+|.|.+|++++..|+++|.
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~ 36 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGA 36 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC
Confidence 3579999999999999999998885
No 352
>PTZ00052 thioredoxin reductase; Provisional
Probab=91.65 E-value=0.25 Score=37.39 Aligned_cols=25 Identities=40% Similarity=0.513 Sum_probs=22.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+-+|..|++.|.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~ 206 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGF 206 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 3589999999999999999998774
No 353
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.64 E-value=0.32 Score=32.85 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+..|+|||+|-.|...|..|++.|+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv 45 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV 45 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC
Confidence 46899999999999999999999986
No 354
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.64 E-value=0.27 Score=35.97 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|-.|..+|..|++.|+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv 48 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI 48 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 45789999999999999999999986
No 355
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.60 E-value=0.3 Score=35.28 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|-.|-++|+.|..+|+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~ 30 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGI 30 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC
Confidence 34689999999999999999988876
No 356
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.59 E-value=0.29 Score=34.27 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=22.1
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+|+|||+|..|...|..|+++|+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~ 28 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY 28 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC
Confidence 569999999999999999999885
No 357
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.58 E-value=0.26 Score=35.43 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.5
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..|.|||+|..|...|+.|+.+|+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~ 25 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKEL 25 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCC
Confidence 369999999999999999998775
No 358
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=91.57 E-value=0.28 Score=36.66 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|+.|+.+|..|++.|.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~ 207 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGA 207 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 4699999999999999999988764
No 359
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=91.55 E-value=0.26 Score=36.48 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+.+|..+++.|.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~ 190 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGV 190 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC
Confidence 4689999999999999999988774
No 360
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.54 E-value=0.27 Score=34.39 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=21.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|.|||+|..|...|..|+++|+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~ 25 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF 25 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC
Confidence 58999999999999999999886
No 361
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.54 E-value=0.24 Score=37.50 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..+|+|||+|..|+-+|..|++.+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~ 374 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIV 374 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC
Confidence 468999999999999999998765
No 362
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.54 E-value=0.26 Score=33.97 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=21.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|+|||+|-.|...|..|++.|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~ 24 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH 24 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC
Confidence 48999999999999999998875
No 363
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=91.49 E-value=0.24 Score=35.11 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=19.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHH
Q 035312 43 VVPVLIVGAGPVGLVLSILLTK 64 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~ 64 (68)
..+|+|||+|++|+.+|..|++
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~ 166 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRR 166 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHH
Confidence 3589999999999999999874
No 364
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.48 E-value=0.28 Score=36.21 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|+|+|.+|+.++..|.+.|.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa 191 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA 191 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC
Confidence 34679999999999999999988874
No 365
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=91.46 E-value=0.27 Score=37.18 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+-+|..|++.|.
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~ 204 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGL 204 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCC
Confidence 3579999999999999999998774
No 366
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.46 E-value=0.13 Score=31.26 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=20.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
+...|+|||+|..|..-+..|.+.|
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~g 30 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAG 30 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC
Confidence 4688999999999999888887665
No 367
>PRK14727 putative mercuric reductase; Provisional
Probab=91.38 E-value=0.27 Score=36.80 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=22.3
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+-+|..|++.|.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~ 212 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGS 212 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 3689999999999999999988774
No 368
>PRK10262 thioredoxin reductase; Provisional
Probab=91.34 E-value=0.26 Score=34.47 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|..|+.+|..|++.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~ 170 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIAS 170 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCC
Confidence 4689999999999999999987653
No 369
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.33 E-value=0.29 Score=34.63 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|+|||+|..|...|..|+++|+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~ 26 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGA 26 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCC
Confidence 69999999999999999999886
No 370
>PRK08328 hypothetical protein; Provisional
Probab=91.30 E-value=0.34 Score=33.49 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+..|+|||+|-.|...|..|++.|+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gv 51 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGV 51 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 45789999999999999999999986
No 371
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.28 E-value=0.29 Score=34.08 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.8
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+|+|||+|..|...|..++++|+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~ 27 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY 27 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC
Confidence 369999999999999999999885
No 372
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.19 E-value=0.28 Score=36.72 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..+|+|||+|..|+-+|..+.+.|
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~g 304 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQG 304 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC
Confidence 468999999999999998877766
No 373
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.14 E-value=0.31 Score=34.65 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=21.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.|+|||+|-+|.++|+.|+.+|+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~ 24 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI 24 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC
Confidence 58999999999999999998874
No 374
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.96 E-value=0.28 Score=37.62 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.1
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|+.|+-+|..|++.|.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~ 167 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYAS 167 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCC
Confidence 4689999999999999999988764
No 375
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.94 E-value=0.36 Score=35.38 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||+|-.|-..|..|++.|+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv 48 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV 48 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 45899999999999999999999986
No 376
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.94 E-value=0.34 Score=34.47 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.7
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+|+|+|+|-.|...|..|++.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~ 26 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL 26 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC
Confidence 469999999999999999999875
No 377
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.92 E-value=0.39 Score=31.48 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||||..|..-+..|.+.|.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga 37 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA 37 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC
Confidence 46889999999999999988877764
No 378
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=90.90 E-value=0.33 Score=36.01 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||+|..|+-+|..|.+.|.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~ 297 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGA 297 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 35789999999999999999988764
No 379
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.89 E-value=0.33 Score=34.01 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.8
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..|.|||+|..|...|..|+++|+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~ 27 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY 27 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC
Confidence 469999999999999999999885
No 380
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.84 E-value=0.31 Score=35.72 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=22.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...++|+|+|.+|+++|..|+++|.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~ 29 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGA 29 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC
Confidence 3579999999999999999999985
No 381
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.77 E-value=0.3 Score=39.78 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+-+|..|++.|.
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~ 169 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGV 169 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 3579999999999999999998875
No 382
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.72 E-value=0.38 Score=35.35 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=22.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|+.|+.+|..|++.|.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~ 182 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGS 182 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC
Confidence 4689999999999999999988764
No 383
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=90.71 E-value=0.34 Score=36.14 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|||+|..|+.+|..|++.|.
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~ 201 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGV 201 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 3689999999999999999988774
No 384
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.53 E-value=0.39 Score=33.14 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=23.2
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+.+++|+|+|-+|...|..|.+.|+
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~ 49 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGA 49 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCc
Confidence 34689999999999999999998875
No 385
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.51 E-value=0.44 Score=31.58 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|+|||+|-.|-..|..|++.|+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv 23 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV 23 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC
Confidence 48999999999999999999986
No 386
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.47 E-value=0.49 Score=29.68 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|+|||+|-.|...|..|.+.|+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv 23 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV 23 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC
Confidence 48999999999999999999886
No 387
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.45 E-value=0.44 Score=33.31 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+..|+|||+|-.|-.+|..|++.|+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV 35 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV 35 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC
Confidence 45789999999999999999999986
No 388
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.44 E-value=0.33 Score=36.22 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=22.2
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..|.|||.|..|+.+|..|+++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~ 27 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK 27 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC
Confidence 569999999999999999999885
No 389
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=90.42 E-value=0.32 Score=35.79 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=18.7
Q ss_pred cCEEEECCCHHHHHHHHHHHH
Q 035312 44 VPVLIVGAGPVGLVLSILLTK 64 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~ 64 (68)
.+|+|||+|++|+.+|.+|+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~ 194 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELAD 194 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 389999999999999998864
No 390
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.39 E-value=0.43 Score=32.26 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+..|+|||+|-.|...|..|++.|+
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GV 45 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGI 45 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCC
Confidence 45899999999999999999999986
No 391
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.35 E-value=0.38 Score=35.90 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.7
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|.|+|.|.+|+++|..|+++|+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~ 38 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGA 38 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCC
Confidence 4689999999999999999999885
No 392
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=90.25 E-value=0.27 Score=35.87 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=19.4
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
....+|+|||+|.++...+..|.+++
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~ 213 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRG 213 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCC
Confidence 35689999999999999999988764
No 393
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=90.18 E-value=0.39 Score=36.71 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=20.9
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+.++||+|+|.|+.-..+|-.|++.|.
T Consensus 2 ~~~yDviI~GTGl~esila~als~~Gk 28 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGK 28 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT-
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCC
Confidence 357999999999999888889999885
No 394
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=0.24 Score=38.41 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.1
Q ss_pred cccCEEEECCCHHHHHHHHHHH
Q 035312 42 AVVPVLIVGAGPVGLVLSILLT 63 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~ 63 (68)
+.+||+|||+|-+|+.+|+-|+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLA 374 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLA 374 (520)
T ss_pred CCceEEEECCCcchHHHHHhHH
Confidence 4689999999999999999886
No 395
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.11 E-value=0.42 Score=36.29 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=22.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|+|+|+.|+.+|..++..|.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga 226 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA 226 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 35789999999999999999988774
No 396
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=90.09 E-value=0.42 Score=34.88 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.9
Q ss_pred ccCEEEECC-CHHHHHHHHHHHHCCCC
Q 035312 43 VVPVLIVGA-GPVGLVLSILLTKLGIF 68 (68)
Q Consensus 43 ~~dV~IVGa-G~aGl~~A~~L~~~G~~ 68 (68)
...|.|||+ |..|-++|+.|..++++
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~ 29 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELF 29 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcc
Confidence 468999998 99999999999888763
No 397
>PRK08223 hypothetical protein; Validated
Probab=89.97 E-value=0.46 Score=34.58 Aligned_cols=26 Identities=38% Similarity=0.515 Sum_probs=24.0
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+..|+|||+|-.|-.+|..|++.|+
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGV 51 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGI 51 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCC
Confidence 45899999999999999999999986
No 398
>PLN02507 glutathione reductase
Probab=89.90 E-value=0.44 Score=36.17 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=22.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|+.|+-+|..|++.|.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~ 227 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGA 227 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC
Confidence 4689999999999999999988764
No 399
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.85 E-value=0.46 Score=33.37 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=21.7
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+|.|||+|..|...|..|++.|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~ 28 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL 28 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC
Confidence 469999999999999999998875
No 400
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.75 E-value=0.51 Score=34.99 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+..|+|||+|-.|..+|..|++.|+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gv 65 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGV 65 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 45799999999999999999999986
No 401
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.75 E-value=0.46 Score=33.46 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.4
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+|+|||+|..|...|+.++..|+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~ 26 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL 26 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC
Confidence 479999999999999999988764
No 402
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.73 E-value=0.43 Score=34.73 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.2
Q ss_pred cCEEEECC-CHHHHHHHHHHHHCCCC
Q 035312 44 VPVLIVGA-GPVGLVLSILLTKLGIF 68 (68)
Q Consensus 44 ~dV~IVGa-G~aGl~~A~~L~~~G~~ 68 (68)
..|+|||+ |..|-++|+.|...|++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~ 28 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMF 28 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccc
Confidence 57999999 99999999999987763
No 403
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.66 E-value=0.49 Score=34.91 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...|+|+|.|.+|+++|..|+++|.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~ 29 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGA 29 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC
Confidence 4579999999999999999999986
No 404
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=89.61 E-value=0.54 Score=31.94 Aligned_cols=26 Identities=38% Similarity=0.422 Sum_probs=22.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|-.|...+..|.+.|.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga 34 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA 34 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 45799999999999999988887763
No 405
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=89.55 E-value=0.56 Score=31.66 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+.+|+|||+|-.|...|..|++.|+
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GV 43 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGI 43 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCC
Confidence 45899999999999999999999986
No 406
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.43 E-value=0.39 Score=35.38 Aligned_cols=23 Identities=43% Similarity=0.730 Sum_probs=21.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|.|||.|..|+.+|..|+++|+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~ 24 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH 24 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC
Confidence 58999999999999999999886
No 407
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=89.40 E-value=0.33 Score=37.29 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=19.3
Q ss_pred cCEEEECCCHHHHHHHHHHHHCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..|+|||+|.|||+++..+-..|
T Consensus 10 spvvVIGgGLAGLsasn~iin~g 32 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKG 32 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcC
Confidence 37999999999999998875543
No 408
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=89.39 E-value=0.48 Score=37.56 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|..|+-+|..+.+.|.
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga 594 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGA 594 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCC
Confidence 4789999999999999999988774
No 409
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.33 E-value=0.55 Score=33.90 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=22.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|..|-+.|+.++..|+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~ 29 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL 29 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC
Confidence 35689999999999999999988774
No 410
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.31 E-value=0.53 Score=35.42 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...|+|+|.|-+|+++|..|.++|.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~ 39 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGC 39 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCC
Confidence 4569999999999999999999885
No 411
>PRK13984 putative oxidoreductase; Provisional
Probab=89.28 E-value=0.46 Score=36.51 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=21.4
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..+|+|||+|..|+-+|..|++.+
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~ 441 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQ 441 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhcc
Confidence 479999999999999999998764
No 412
>PTZ00058 glutathione reductase; Provisional
Probab=89.12 E-value=0.52 Score=36.72 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|..|+-+|..|++.|.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~ 261 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGA 261 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC
Confidence 5789999999999999999988774
No 413
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=89.08 E-value=0.15 Score=39.79 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=18.9
Q ss_pred cCEEEECCCHHHHHHHHHHHH
Q 035312 44 VPVLIVGAGPVGLVLSILLTK 64 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~ 64 (68)
-+++||||||.|+-.|-+|+.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~D 239 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELAD 239 (491)
T ss_pred EEEEEECCCCcceeehHHHHH
Confidence 579999999999999999864
No 414
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.06 E-value=0.57 Score=34.38 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|-.|..+|..|++.|+
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gv 52 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGV 52 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 45899999999999999999999986
No 415
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=88.98 E-value=0.38 Score=37.60 Aligned_cols=24 Identities=46% Similarity=0.721 Sum_probs=21.4
Q ss_pred ccccCEEEECCCHHHHHHHHHHHH
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTK 64 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~ 64 (68)
...+|++|||+|++|+-+|+.++.
T Consensus 16 ~~~~~vvivgag~~g~f~a~~~s~ 39 (486)
T COG2509 16 NAALDVVIVGAGPAGLFAAYELSG 39 (486)
T ss_pred hhccceEEECCCchHHHHHHHHhh
Confidence 356999999999999999999874
No 416
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.91 E-value=0.54 Score=33.31 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=22.0
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..|.|||+|..|...|..+++.|+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~ 29 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV 29 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC
Confidence 479999999999999999999886
No 417
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.85 E-value=0.48 Score=36.34 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G 66 (68)
+|+|||.|-.|+.+|..|+++|
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g 24 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKC 24 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcC
Confidence 5999999999999999999875
No 418
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.80 E-value=0.62 Score=34.17 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|-.|..+|..|++.|+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV 159 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC
Confidence 45789999999999999999999986
No 419
>PLN02602 lactate dehydrogenase
Probab=88.72 E-value=0.62 Score=34.44 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=22.0
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..|+|||+|-.|-++|+.|..+++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l 61 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDL 61 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC
Confidence 699999999999999999988775
No 420
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.69 E-value=0.52 Score=34.69 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=22.1
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+|+|||-|.+|+++|..|+++|.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~ 27 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGV 27 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCC
Confidence 579999999999999999999885
No 421
>PLN02546 glutathione reductase
Probab=88.47 E-value=0.6 Score=36.29 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.9
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|+.|+-+|..|++.|.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~ 276 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKS 276 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCC
Confidence 4689999999999999999987653
No 422
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.46 E-value=0.61 Score=33.05 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|.|||+|-.|...|..|+++|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~ 24 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI 24 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC
Confidence 48999999999999999999875
No 423
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=88.39 E-value=0.67 Score=35.48 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=23.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+++|||+|+.|+-.|..+++.|.
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~ 197 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGS 197 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 45789999999999999999999885
No 424
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=88.38 E-value=0.88 Score=26.52 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=21.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
...+++|+|+|-+|..++..|.+.+
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~ 46 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEG 46 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC
Confidence 3468999999999999999988764
No 425
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.34 E-value=0.65 Score=33.96 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.9
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..|+|||+|..|...|..+++.|+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~ 31 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL 31 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC
Confidence 469999999999999999999886
No 426
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=88.32 E-value=0.65 Score=34.65 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=22.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|..|..++..|...|.
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~ 206 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGV 206 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCC
Confidence 45789999999999999999988774
No 427
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.27 E-value=0.57 Score=35.99 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGIF 68 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~~ 68 (68)
+|.|||.|..||+.|.-|++.|+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHe 25 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHE 25 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCe
Confidence 589999999999999999999863
No 428
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.12 E-value=0.62 Score=35.07 Aligned_cols=25 Identities=20% Similarity=-0.060 Sum_probs=22.8
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+.|+|+|.|-+|.++|..|.++|.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~ 32 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLP 32 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCC
Confidence 4679999999999999999999885
No 429
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.04 E-value=0.76 Score=33.32 Aligned_cols=24 Identities=21% Similarity=0.492 Sum_probs=21.9
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..|+|||+|-.|-..|+.++.+|+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl 30 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNL 30 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC
Confidence 579999999999999999988875
No 430
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.97 E-value=0.75 Score=32.03 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|.|||+|..|...|..|+++|+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~ 25 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH 25 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC
Confidence 59999999999999999999875
No 431
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.94 E-value=0.64 Score=34.99 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...|.|+|.|-+|+++|..|+++|+
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~ 31 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGA 31 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCC
Confidence 3569999999999999999999985
No 432
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=87.92 E-value=0.62 Score=33.25 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=19.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCC
Q 035312 46 VLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 46 V~IVGaG~aGl~~A~~L~~~G~ 67 (68)
|.|||+|-.|.++|+.|+.+|+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~ 22 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGL 22 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCC
Confidence 5799999999999999998875
No 433
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=87.88 E-value=0.75 Score=32.44 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.5
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+|.|||+|..|.+.|..|.+.|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~ 30 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGL 30 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC
Confidence 579999999999999999988873
No 434
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=87.86 E-value=0.78 Score=34.58 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=24.0
Q ss_pred cccCEEEECC-CHHHHHHHHHHHHCCCC
Q 035312 42 AVVPVLIVGA-GPVGLVLSILLTKLGIF 68 (68)
Q Consensus 42 ~~~dV~IVGa-G~aGl~~A~~L~~~G~~ 68 (68)
....|.|||+ |..|-++|+.|...+++
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~ 70 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVF 70 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccc
Confidence 4589999999 99999999999988764
No 435
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=87.81 E-value=0.77 Score=34.28 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|..|..++..|...|+
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~ 204 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGV 204 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCC
Confidence 34789999999999999999988873
No 436
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=87.79 E-value=0.75 Score=33.04 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=21.0
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGA-GPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGa-G~aGl~~A~~L~~~G~ 67 (68)
+|+|+|+ |..|..+|..|+..|+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~ 25 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDV 25 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCC
Confidence 5899998 9999999999998875
No 437
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=87.75 E-value=0.51 Score=35.73 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=21.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..++|+|||+|.+|+-.|.+|++.+
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a 227 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVA 227 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhC
Confidence 3478999999999999999998654
No 438
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=87.73 E-value=0.34 Score=33.75 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...++|+|+|-+|.+.+..|++.|.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~ 141 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADC 141 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCC
Confidence 4679999999999999999988774
No 439
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=87.73 E-value=0.75 Score=36.68 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=22.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|+.|+-.|..|++.|.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~ 336 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGS 336 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCC
Confidence 4689999999999999999988764
No 440
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=87.69 E-value=0.85 Score=31.87 Aligned_cols=25 Identities=44% Similarity=0.638 Sum_probs=20.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+++|+|+|+.|+.++..++..|.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~ 169 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGG 169 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC
Confidence 3579999999999999887777664
No 441
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=87.59 E-value=0.81 Score=33.29 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.6
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGA-GPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGa-G~aGl~~A~~L~~~G~ 67 (68)
.|+|||+ |-.|.++|+.|..+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~ 24 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPY 24 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC
Confidence 4899999 9999999999988765
No 442
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.52 E-value=0.69 Score=34.17 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=22.0
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
--|+|+|.|-+|+++|..|+++|+
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~ 30 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGI 30 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCC
Confidence 459999999999999999999986
No 443
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=87.52 E-value=0.6 Score=32.59 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=18.0
Q ss_pred EEEECCCHHHHHHHHHHHHCC
Q 035312 46 VLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 46 V~IVGaG~aGl~~A~~L~~~G 66 (68)
++|||+|++|+.+|..|.+..
T Consensus 1 ivivG~g~aG~~aa~~l~~~~ 21 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL 21 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC
Confidence 589999999999999877643
No 444
>PRK05442 malate dehydrogenase; Provisional
Probab=87.42 E-value=0.73 Score=33.68 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.3
Q ss_pred ccCEEEECC-CHHHHHHHHHHHHCCCC
Q 035312 43 VVPVLIVGA-GPVGLVLSILLTKLGIF 68 (68)
Q Consensus 43 ~~dV~IVGa-G~aGl~~A~~L~~~G~~ 68 (68)
...|.|||+ |..|-++|+.|...+++
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~ 30 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDML 30 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhc
Confidence 358999998 99999999999877653
No 445
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.40 E-value=0.85 Score=31.92 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.7
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..|.|||+|..|...|..|++.|+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~ 28 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM 28 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC
Confidence 469999999999999999998885
No 446
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=87.37 E-value=0.88 Score=32.23 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+++|+|+|=++-++++.|++.|.
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~ 149 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGV 149 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCC
Confidence 35689999999999999999998885
No 447
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=87.36 E-value=0.39 Score=33.73 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.8
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+++|+|+|-+|.+.+..|++.|+
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~ 147 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGV 147 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCC
Confidence 34689999999999999999998873
No 448
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=87.33 E-value=0.68 Score=32.74 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=19.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCC
Q 035312 46 VLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 46 V~IVGaG~aGl~~A~~L~~~G~ 67 (68)
|.|||+|-.|...|+.|+.+|+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l 22 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKEL 22 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCC
Confidence 5899999999999999988775
No 449
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.32 E-value=0.75 Score=36.14 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.6
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|||+|..|+-+|..+.+.|.
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga 347 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGA 347 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 35789999999999999999988763
No 450
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=87.20 E-value=0.92 Score=33.67 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|=.|..+|..|++.|+
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gv 66 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGV 66 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCC
Confidence 45799999999999999999999986
No 451
>PRK07411 hypothetical protein; Validated
Probab=87.20 E-value=0.89 Score=33.82 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=23.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|-.|-.+|..|++.|+
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gv 62 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGI 62 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC
Confidence 45899999999999999999999986
No 452
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.18 E-value=0.75 Score=34.85 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=21.5
Q ss_pred cCEEEECCCHHHHHHHHHHHHCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
.+|+|+|+|-.|..+|..|+++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~ 24 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG 24 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC
Confidence 47999999999999999999987
No 453
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=87.16 E-value=0.93 Score=32.43 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.1
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+++|+|.|.+|..++..|++.|.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga 176 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA 176 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence 35789999999999999999998774
No 454
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=87.11 E-value=0.48 Score=36.29 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.0
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
..++.|+|||||-.|+..|..+.++
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rk 61 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRK 61 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhh
Confidence 4679999999999999999888664
No 455
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=87.08 E-value=0.62 Score=35.05 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..++|+|||+|-+|.-.|.+|++.|
T Consensus 174 ~GKrV~VIG~GaSA~di~~~l~~~g 198 (443)
T COG2072 174 RGKRVLVIGAGASAVDIAPELAEVG 198 (443)
T ss_pred CCCeEEEECCCccHHHHHHHHHhcC
Confidence 3489999999999999999998875
No 456
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.01 E-value=0.83 Score=33.27 Aligned_cols=24 Identities=42% Similarity=0.670 Sum_probs=21.3
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCC
Q 035312 45 PVLIVGA-GPVGLVLSILLTKLGIF 68 (68)
Q Consensus 45 dV~IVGa-G~aGl~~A~~L~~~G~~ 68 (68)
.|+|||+ |..|-.+|+.|..++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~ 26 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELF 26 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcc
Confidence 5899999 99999999999987753
No 457
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=86.98 E-value=0.82 Score=33.02 Aligned_cols=22 Identities=45% Similarity=0.791 Sum_probs=20.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G 66 (68)
.|+|+|+|-.|...|+.|++.|
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC
Confidence 5899999999999999999988
No 458
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.93 E-value=0.85 Score=33.21 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.8
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGA-GPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGa-G~aGl~~A~~L~~~G~ 67 (68)
.|+|||+ |-.|.++|+.|..+++
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~ 25 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPL 25 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC
Confidence 5899999 9999999999988775
No 459
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.77 E-value=0.8 Score=32.00 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|.|||.|..|.+.|..|.++|+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~ 24 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH 24 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC
Confidence 48999999999999999998875
No 460
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.73 E-value=0.93 Score=35.10 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.9
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++|.+|||+|-.|+++|...+..|.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GA 44 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGA 44 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCc
Confidence 457999999999999999999888764
No 461
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=86.68 E-value=0.96 Score=32.38 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.5
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
...+|+|||+|..|..++..|...|
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g 201 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKG 201 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcC
Confidence 4578999999999999998887755
No 462
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=86.57 E-value=1.1 Score=30.46 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+.|+|||.|-.|.+.|..|+.+|+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~ 28 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGV 28 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCChHHHHHHHHHHhCCC
Confidence 5789999999999999999999986
No 463
>PRK04148 hypothetical protein; Provisional
Probab=86.57 E-value=0.54 Score=30.77 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..++++||.| .|...|..|++.|+
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~ 40 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGF 40 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCC
Confidence 3579999999 99988999999885
No 464
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=86.55 E-value=0.84 Score=35.66 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=22.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...+|+|+|+|++|+.++..+...|.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA 188 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA 188 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 34789999999999999998888763
No 465
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=86.55 E-value=1.3 Score=27.56 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..+++|+|+|..|...+..|.+.|
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g 42 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG 42 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC
Confidence 468999999999999999998875
No 466
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=86.14 E-value=1.3 Score=29.16 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=22.0
Q ss_pred cccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGA-GPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGa-G~aGl~~A~~L~~~G~ 67 (68)
....++|+|+ |..|..++..|.+.|.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~ 53 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA 53 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 3478999997 9999999999988763
No 467
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=86.14 E-value=1.2 Score=31.96 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+.++|+|+|=++-+.++.|++.|.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~ 151 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGV 151 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC
Confidence 4689999999999999999998875
No 468
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=86.11 E-value=1.1 Score=34.50 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.4
Q ss_pred cccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGA-GPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGa-G~aGl~~A~~L~~~G~ 67 (68)
....|+|||+ |..|-++|+.|...++
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v 125 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEV 125 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccc
Confidence 3468999999 9999999999988743
No 469
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=86.02 E-value=0.36 Score=31.05 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=21.8
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+.+|.|||+|-.|-.++..|.+.|+
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~ 34 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGH 34 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTS
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCC
Confidence 345799999999999999999999885
No 470
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=85.97 E-value=0.27 Score=38.45 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=22.9
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+++.+-|||+|+|||++|..|-|.|.
T Consensus 20 VdqKsaY~vG~GlAsLA~AvfLIRDg~ 46 (587)
T COG4716 20 VDQKSAYIVGGGLASLAAAVFLIRDGQ 46 (587)
T ss_pred cccceeEEEccchHhhhheeEEEeccc
Confidence 355889999999999999999877663
No 471
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.90 E-value=1.1 Score=31.92 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=21.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|.|||+|.-|...|..|+++|+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~ 28 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGV 28 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCC
Confidence 69999999999999999999885
No 472
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=85.89 E-value=0.97 Score=37.38 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.5
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|||+|.+|+-+|..+.+.|.
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga 471 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGG 471 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC
Confidence 4789999999999999999998874
No 473
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=85.60 E-value=1.1 Score=32.61 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.7
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGA-GPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGa-G~aGl~~A~~L~~~G~ 67 (68)
+|+|||+ |..|-++|+.|..+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~ 24 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRM 24 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccc
Confidence 5899999 9999999999988765
No 474
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=85.54 E-value=1.1 Score=33.86 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=20.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
...+|+|||+|..|+-+|..+.+.|
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~g 306 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHG 306 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC
Confidence 3478999999999999987776665
No 475
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=85.49 E-value=0.84 Score=33.96 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=22.3
Q ss_pred ccCEEEECCCHHHHH-HHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLV-LSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~-~A~~L~~~G~ 67 (68)
..+|.|+|.|-+|++ +|..|+++|.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~ 32 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGY 32 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCC
Confidence 357999999999999 6999999986
No 476
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=85.41 E-value=1.2 Score=31.55 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=22.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
...+|+|||+|-.|-..+..|++.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 4689999999999999999999875
No 477
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=85.34 E-value=1.3 Score=31.39 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=22.4
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....++|+|+|=+|.++|+.|++.|.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~ 150 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGA 150 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence 34679999999999999999998875
No 478
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=85.16 E-value=1.1 Score=34.69 Aligned_cols=23 Identities=52% Similarity=0.872 Sum_probs=20.0
Q ss_pred cCEEEECCCHHHHHHHHHHHHCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
.+|+|+|+||+++-+|.-+.+.+
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~ 24 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHG 24 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhcc
Confidence 36999999999999999987654
No 479
>PLN02852 ferredoxin-NADP+ reductase
Probab=84.98 E-value=1.2 Score=34.48 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKL 65 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~ 65 (68)
..+|+|||+|..|+-+|..|.+.
T Consensus 166 gk~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 166 SDTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC
Confidence 46899999999999999998775
No 480
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.96 E-value=1.3 Score=32.11 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..+|+|+|+|.-|.+.|..|+++|
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g 30 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG 30 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC
Confidence 357999999999999999999887
No 481
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=84.95 E-value=1.5 Score=30.95 Aligned_cols=25 Identities=40% Similarity=0.757 Sum_probs=21.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|+|+|+|+.|+.++..++..|.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~ 197 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGF 197 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC
Confidence 4689999999999999887777663
No 482
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.88 E-value=1.5 Score=31.04 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=22.0
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+|.|||+|-.|...|..|.++|+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~ 28 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGH 28 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCC
Confidence 469999999999999999999885
No 483
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.77 E-value=1.3 Score=32.27 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|+|+|+|..|...|..|.++|+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~ 24 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN 24 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC
Confidence 58999999999999999998875
No 484
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.74 E-value=1.3 Score=32.16 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.1
Q ss_pred cCEEEECC-CHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGA-GPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGa-G~aGl~~A~~L~~~G~ 67 (68)
..|+|+|+ |..|-++|+.|..+++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~ 27 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDV 27 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcc
Confidence 56999999 9999999999987664
No 485
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.71 E-value=1.7 Score=29.31 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=23.3
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|+|.|-.|..+|..|.+.|.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~ 52 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGA 52 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 45789999999999999999999885
No 486
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.61 E-value=1.3 Score=33.57 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|+|.|+.|..+|..++..|.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga 219 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGA 219 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcC
Confidence 45789999999999999999987764
No 487
>PLN00106 malate dehydrogenase
Probab=84.55 E-value=1.7 Score=31.78 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.7
Q ss_pred cccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGA-GPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGa-G~aGl~~A~~L~~~G~ 67 (68)
....|+|||+ |-.|-++|+.|..+++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~ 43 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPL 43 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC
Confidence 3468999999 9999999999987765
No 488
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.48 E-value=1.2 Score=33.02 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+|.|+|.|-+|+++|..|.++|+
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~ 33 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGA 33 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCC
Confidence 3579999999999999999999986
No 489
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=84.45 E-value=1.4 Score=34.11 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....++|+|+|-+|.++++.|++.|.
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~ 403 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGA 403 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence 34689999999999999999999884
No 490
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=84.26 E-value=1.7 Score=29.85 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=21.0
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
...|+|+|+|+.|+.++..++..|.
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~ 145 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGA 145 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC
Confidence 4579999999999999888877764
No 491
>PRK08017 oxidoreductase; Provisional
Probab=84.19 E-value=1.6 Score=28.79 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.2
Q ss_pred cCEEEECC-CHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGA-GPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGa-G~aGl~~A~~L~~~G~ 67 (68)
..++|+|+ |..|..+|..|+++|.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~ 27 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY 27 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC
Confidence 35999999 9999999999998874
No 492
>PRK06153 hypothetical protein; Provisional
Probab=84.16 E-value=1.1 Score=34.10 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.7
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....|+|||+|=.|-..+..|++.|+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GV 200 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPV 200 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCC
Confidence 34799999999999999999999986
No 493
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=84.16 E-value=1.6 Score=31.09 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=22.0
Q ss_pred cCEEEECCCHHHHHHHHHHHHCCC
Q 035312 44 VPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 44 ~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.+++|+|+|=++.++++.|++.|.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~ 146 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF 146 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC
Confidence 479999999999999999998875
No 494
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=84.10 E-value=1.6 Score=31.71 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
+|+|||+|-.|...+..|++.|+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv 23 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF 23 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC
Confidence 48999999999999999999886
No 495
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=84.01 E-value=2 Score=27.16 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.8
Q ss_pred EEEECC-CHHHHHHHHHHHHCCC
Q 035312 46 VLIVGA-GPVGLVLSILLTKLGI 67 (68)
Q Consensus 46 V~IVGa-G~aGl~~A~~L~~~G~ 67 (68)
|+|+|| |..|-..+.+|.++|+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~ 23 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH 23 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS
T ss_pred eEEECCCChHHHHHHHHHHHCCC
Confidence 789998 9999999999988874
No 496
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=83.99 E-value=1.5 Score=31.28 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.9
Q ss_pred cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 42 AVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 42 ~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
....++|+|.|-+|...|..|+..|.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~ 175 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGA 175 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCC
Confidence 35789999999999999999988774
No 497
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=83.69 E-value=1.5 Score=34.29 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.2
Q ss_pred ccCEEEECCCHHHHHHHHHHHHCC
Q 035312 43 VVPVLIVGAGPVGLVLSILLTKLG 66 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~~G 66 (68)
..+|+|||+|..|+-+|..+.+.|
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~g 491 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHG 491 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcC
Confidence 468999999999999998887776
No 498
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=83.52 E-value=1.7 Score=31.42 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.3
Q ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312 41 EAVVPVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
..+.+|+|||+|-.|..+|..|+..|+
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGV 43 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGV 43 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCC
Confidence 346899999999999999999999886
No 499
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=83.48 E-value=1.6 Score=33.12 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=18.6
Q ss_pred ccCEEEECCCHHHHHHHHHHHH
Q 035312 43 VVPVLIVGAGPVGLVLSILLTK 64 (68)
Q Consensus 43 ~~dV~IVGaG~aGl~~A~~L~~ 64 (68)
..+++|||+|+.|+-+|..+++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~ 208 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNA 208 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHH
Confidence 4689999999999999976653
No 500
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=83.43 E-value=1.4 Score=32.26 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC
Q 035312 45 PVLIVGAGPVGLVLSILLTKLGI 67 (68)
Q Consensus 45 dV~IVGaG~aGl~~A~~L~~~G~ 67 (68)
.|.|||.|-+|+++|..|+++|+
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~ 23 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA 23 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC
Confidence 37899999999999999999986
Done!