BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035316
(68 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M9M9|NDUAC_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1
SV=1
Length = 159
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 59/66 (89%), Gaps = 1/66 (1%)
Query: 4 KSALKSIRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKL- 62
KSAL++IRE+GLG F+R ++EEGF+R L DGNL+QTK+HN GATLVGVDKFGNKYYQKL
Sbjct: 7 KSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLG 66
Query: 63 DEQFGQ 68
D Q+G+
Sbjct: 67 DTQYGR 72
>sp|O97725|NDUAC_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Bos taurus GN=NDUFA12 PE=1 SV=1
Length = 145
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 26 GFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGQ 68
G+LR L N + R TLVG DK+GNKYY+ + FG+
Sbjct: 22 GYLRVLFRANDV------RVGTLVGEDKYGNKYYEDNKQFFGR 58
>sp|Q7TMF3|NDUAC_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Mus musculus GN=Ndufa12 PE=1 SV=2
Length = 145
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 26 GFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGQ 68
G LR N + R TLVG DK+GNKYY+ + FG+
Sbjct: 22 GLLRVFFRANDI------RIGTLVGEDKYGNKYYEDNKQFFGR 58
>sp|Q54MV7|NDUAC_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2
Length = 138
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 47 TLVGVDKFGNKYYQKLDEQFGQ 68
TLVGVDK GN+YY+ E +G+
Sbjct: 33 TLVGVDKVGNRYYENRQEIYGR 54
>sp|Q0MQ85|NDUAC_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 26 GFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGQ 68
G+LR N + TLVG DK+GNKYY+ + FG+
Sbjct: 22 GYLRVFFRTNDAKV------GTLVGEDKYGNKYYEDNKQFFGR 58
>sp|Q0MQ87|NDUAC_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 26 GFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGQ 68
G+LR N + TLVG DK+GNKYY+ + FG+
Sbjct: 22 GYLRVFFRTNDAKV------GTLVGEDKYGNKYYEDNKQFFGR 58
>sp|Q9UI09|NDUAC_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Homo sapiens GN=NDUFA12 PE=1 SV=1
Length = 145
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 26 GFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGQ 68
G+LR N + TLVG DK+GNKYY+ + FG+
Sbjct: 22 GYLRVFFRTNDAKV------GTLVGEDKYGNKYYEDNKQFFGR 58
>sp|Q0MQ86|NDUAC_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 26 GFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGQ 68
G+LR N + TLVG DK+GNKYY+ + FG+
Sbjct: 22 GYLRVFFRTNDAKV------GTLVGEDKYGNKYYEDNKQFFGR 58
>sp|Q9N2W7|NDUAC_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=3
SV=2
Length = 146
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 1 MAMKSALKSIRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQ 60
M++K+ L + + G ++E+ G ++A+L + R TLVG D FGN+YY+
Sbjct: 1 MSLKAWLGIDKIQKFGQMVKEI---GGVKAVLKKRYLMDA--TRVGTLVGSDNFGNRYYE 55
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,474,637
Number of Sequences: 539616
Number of extensions: 818341
Number of successful extensions: 2221
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2213
Number of HSP's gapped (non-prelim): 9
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)