Query 035316
Match_columns 68
No_of_seqs 102 out of 156
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 18:01:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035316.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035316hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d3bb_ b.38.1.1 (B:) B core S 56.7 3 0.00022 23.0 2.0 17 46-62 23-39 (81)
2 d1i4k1_ b.38.1.1 (1:) Archaeal 46.6 4.1 0.0003 21.9 1.4 18 46-63 28-45 (72)
3 d1b34b_ b.38.1.1 (B:) D2 core 44.9 16 0.0012 20.5 4.0 18 46-63 29-46 (93)
4 d1h641_ b.38.1.1 (1:) Archaeal 43.5 4.9 0.00035 21.4 1.4 17 46-62 27-43 (71)
5 d1mgqa_ b.38.1.1 (A:) Archaeal 39.0 6.6 0.00048 21.1 1.5 18 46-63 31-48 (74)
6 d1th7a1 b.38.1.1 (A:3-78) Arch 38.0 7 0.00051 21.1 1.5 17 46-62 32-48 (76)
7 d1i8fa_ b.38.1.1 (A:) Archaeal 36.7 7.2 0.00052 21.0 1.4 17 46-62 27-43 (71)
8 d2fwka1 b.38.1.1 (A:24-115) U6 30.6 10 0.00076 21.0 1.5 19 46-64 30-48 (92)
9 d2qamz1 d.325.1.1 (Z:2-78) Rib 30.2 6.2 0.00045 22.3 0.4 23 4-26 52-74 (77)
10 d1ljoa_ b.38.1.1 (A:) Archaeal 28.2 12 0.00087 20.2 1.4 17 46-62 31-47 (75)
11 d1lj8a3 a.100.1.9 (A:287-492) 25.3 25 0.0018 22.0 2.8 20 3-22 183-202 (206)
12 d1n9ra_ b.38.1.1 (A:) Small nu 24.3 14 0.0011 19.5 1.2 17 46-62 22-38 (68)
13 d1d3ba_ b.38.1.1 (A:) D3 core 23.8 20 0.0014 19.0 1.8 17 46-62 27-43 (72)
14 d1i17a_ d.6.1.1 (A:) Prion-lik 22.3 2.4 0.00018 26.0 -2.7 12 55-66 25-36 (107)
15 d2isba1 c.8.9.1 (A:2-179) Fuma 20.6 15 0.0011 23.6 1.0 15 46-60 163-178 (178)
No 1
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.66 E-value=3 Score=23.03 Aligned_cols=17 Identities=24% Similarity=0.116 Sum_probs=14.3
Q ss_pred ceEeeeeCCCceeeccC
Q 035316 46 ATLVGVDKFGNKYYQKL 62 (68)
Q Consensus 46 G~lVGeD~~GNkYYE~~ 62 (68)
|+|+|.|+++|-=-++.
T Consensus 23 G~L~~~D~~~NlvL~~~ 39 (81)
T d1d3bb_ 23 GTFKAFDKHMNLILCDC 39 (81)
T ss_dssp EEEEECCTTCCEEEEEE
T ss_pred EEEEEECCccCEEEcCE
Confidence 99999999999766543
No 2
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Probab=46.61 E-value=4.1 Score=21.86 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=15.2
Q ss_pred ceEeeeeCCCceeeccCc
Q 035316 46 ATLVGVDKFGNKYYQKLD 63 (68)
Q Consensus 46 G~lVGeD~~GNkYYE~~~ 63 (68)
|+|.+.|++.|-.-++..
T Consensus 28 G~L~~~D~~mNlvL~~~~ 45 (72)
T d1i4k1_ 28 GTLDGYDIHMNLVLLDAE 45 (72)
T ss_dssp EEEEEECTTCCEEEEEEE
T ss_pred EEEEEEcCCCCeEEeeEE
Confidence 999999999998776543
No 3
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.85 E-value=16 Score=20.47 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=14.7
Q ss_pred ceEeeeeCCCceeeccCc
Q 035316 46 ATLVGVDKFGNKYYQKLD 63 (68)
Q Consensus 46 G~lVGeD~~GNkYYE~~~ 63 (68)
|.|+|-|+|-|-=-+|..
T Consensus 29 G~L~afD~~~NlVL~d~~ 46 (93)
T d1b34b_ 29 GRVKAFDRHCNMVLENVK 46 (93)
T ss_dssp EEEEEECTTCCEEEEEEE
T ss_pred EEEEEeccceeEEeeceE
Confidence 999999999997655443
No 4
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=43.51 E-value=4.9 Score=21.38 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.6
Q ss_pred ceEeeeeCCCceeeccC
Q 035316 46 ATLVGVDKFGNKYYQKL 62 (68)
Q Consensus 46 G~lVGeD~~GNkYYE~~ 62 (68)
|+|++.|++.|-.-++.
T Consensus 27 G~L~~~D~~mNlvL~~~ 43 (71)
T d1h641_ 27 GRLIGYDIHLNVVLADA 43 (71)
T ss_dssp EEEEEECTTCCEEEEEE
T ss_pred EEEEEECCCCCeEEeeE
Confidence 99999999999876654
No 5
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=39.00 E-value=6.6 Score=21.08 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=15.2
Q ss_pred ceEeeeeCCCceeeccCc
Q 035316 46 ATLVGVDKFGNKYYQKLD 63 (68)
Q Consensus 46 G~lVGeD~~GNkYYE~~~ 63 (68)
|+|++.|++.|-.-++..
T Consensus 31 G~L~~~D~~mNl~L~~~~ 48 (74)
T d1mgqa_ 31 GVLKSFDLHMNLVLNDAE 48 (74)
T ss_dssp EEEEEECTTCCEEEEEEE
T ss_pred EEEEEECCCCCeEEeeEE
Confidence 999999999998776543
No 6
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]}
Probab=37.96 E-value=7 Score=21.13 Aligned_cols=17 Identities=18% Similarity=0.061 Sum_probs=14.4
Q ss_pred ceEeeeeCCCceeeccC
Q 035316 46 ATLVGVDKFGNKYYQKL 62 (68)
Q Consensus 46 G~lVGeD~~GNkYYE~~ 62 (68)
|+|.+.|++.|---++.
T Consensus 32 G~L~~~D~~mNlvL~~~ 48 (76)
T d1th7a1 32 GMLRSYDQHMNLVLSDS 48 (76)
T ss_dssp EEEEEECTTCCEEEEEE
T ss_pred EEEEEECCCCCEEEeEE
Confidence 99999999999776643
No 7
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=36.67 E-value=7.2 Score=20.97 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=14.5
Q ss_pred ceEeeeeCCCceeeccC
Q 035316 46 ATLVGVDKFGNKYYQKL 62 (68)
Q Consensus 46 G~lVGeD~~GNkYYE~~ 62 (68)
|+|++.|++.|---++.
T Consensus 27 G~L~~~D~~mNivL~~~ 43 (71)
T d1i8fa_ 27 GILRSFDQHVNLLLEDA 43 (71)
T ss_dssp EEEEEECTTCCEEEEEE
T ss_pred EEEEEECCCcceEEccE
Confidence 99999999999776643
No 8
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Probab=30.59 E-value=10 Score=20.97 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=16.1
Q ss_pred ceEeeeeCCCceeeccCcc
Q 035316 46 ATLVGVDKFGNKYYQKLDE 64 (68)
Q Consensus 46 G~lVGeD~~GNkYYE~~~~ 64 (68)
|+|++.|++.|---++..+
T Consensus 30 G~L~~~D~~~NlvL~d~~E 48 (92)
T d2fwka1 30 GVLRGFDEYVNMVLDDVQE 48 (92)
T ss_dssp CEEEEECTTCCEEEESCCE
T ss_pred EEEEEEcCCCCEEEeeEEE
Confidence 9999999999988776553
No 9
>d2qamz1 d.325.1.1 (Z:2-78) Ribosomal protein L28 (L28p) {Escherichia coli [TaxId: 562]}
Probab=30.24 E-value=6.2 Score=22.25 Aligned_cols=23 Identities=26% Similarity=0.640 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcHHHHHHHHHHcC
Q 035316 4 KSALKSIRERGLGSFLRELKEEG 26 (68)
Q Consensus 4 ~~~~~~i~~~G~~~fl~~l~~~G 26 (68)
.++|+.|...|+-.+++++.+.|
T Consensus 52 tk~LRtI~K~Gld~~l~k~~~~g 74 (77)
T d2qamz1 52 AKGMRVIDKKGIDTVLAELRARG 74 (77)
T ss_dssp TTHHHHHTTSCHHHHHHTTTTTT
T ss_pred hhheeeehhCCHHHHHHHHHHcc
Confidence 57899999999999999986655
No 10
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Probab=28.17 E-value=12 Score=20.24 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=14.5
Q ss_pred ceEeeeeCCCceeeccC
Q 035316 46 ATLVGVDKFGNKYYQKL 62 (68)
Q Consensus 46 G~lVGeD~~GNkYYE~~ 62 (68)
|+|.|-|++-|---++.
T Consensus 31 G~L~~~D~~mNlvL~~~ 47 (75)
T d1ljoa_ 31 GKLEGVDDYMNLYLTNA 47 (75)
T ss_dssp EEEEEECTTCCEEEEEE
T ss_pred EEEEEEcCCCcEEEeEE
Confidence 99999999999876654
No 11
>d1lj8a3 a.100.1.9 (A:287-492) Mannitol 2-dehydrogenase {Pseudomonas fluorescens [TaxId: 294]}
Probab=25.27 E-value=25 Score=21.98 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcHHHHHHHH
Q 035316 3 MKSALKSIRERGLGSFLREL 22 (68)
Q Consensus 3 ~~~~~~~i~~~G~~~fl~~l 22 (68)
+.++++.|.++|++..++++
T Consensus 183 v~~~~~~i~~~Gv~~aL~~l 202 (206)
T d1lj8a3 183 FERCYGSLRDNGVTTTLKHL 202 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHH
Confidence 67789999999999999988
No 12
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.33 E-value=14 Score=19.52 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.2
Q ss_pred ceEeeeeCCCceeeccC
Q 035316 46 ATLVGVDKFGNKYYQKL 62 (68)
Q Consensus 46 G~lVGeD~~GNkYYE~~ 62 (68)
|+|++.|+|-|---++.
T Consensus 22 G~L~~~D~~mNlvL~~~ 38 (68)
T d1n9ra_ 22 GTLVSTDNYFNLQLNEA 38 (68)
T ss_dssp EEEEECCTTTCEEEEEE
T ss_pred EEEEEECCcCceEEeeE
Confidence 99999999999766543
No 13
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.81 E-value=20 Score=19.01 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=14.7
Q ss_pred ceEeeeeCCCceeeccC
Q 035316 46 ATLVGVDKFGNKYYQKL 62 (68)
Q Consensus 46 G~lVGeD~~GNkYYE~~ 62 (68)
|+|++.|.+-|-.-++.
T Consensus 27 G~L~~~D~~mNi~L~~~ 43 (72)
T d1d3ba_ 27 GKLIEAEDNMNCQMSNI 43 (72)
T ss_dssp EEEEEECTTCCEEEEEE
T ss_pred EEEEEEcCCeeEEEEEE
Confidence 99999999999876654
No 14
>d1i17a_ d.6.1.1 (A:) Prion-like protein Doppel {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.31 E-value=2.4 Score=26.02 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=8.8
Q ss_pred CceeeccCcccc
Q 035316 55 GNKYYQKLDEQF 66 (68)
Q Consensus 55 GNkYYE~~~~~~ 66 (68)
||+||+.+-.+|
T Consensus 25 ~nRYY~eNy~ry 36 (107)
T d1i17a_ 25 GNRYYAANYWQF 36 (107)
T ss_dssp HHHHHHHHGGGS
T ss_pred ccHHHHHHHHhC
Confidence 899999665444
No 15
>d2isba1 c.8.9.1 (A:2-179) Fumarate hydratase class I beta subunit {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.64 E-value=15 Score=23.59 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=12.9
Q ss_pred c-eEeeeeCCCceeec
Q 035316 46 A-TLVGVDKFGNKYYQ 60 (68)
Q Consensus 46 G-~lVGeD~~GNkYYE 60 (68)
| .+|..|..||..|.
T Consensus 163 gP~iV~iD~~Gn~lyk 178 (178)
T d2isba1 163 GPCIVAIDAHGNSLYR 178 (178)
T ss_dssp EEEEEEECTTSCBTTC
T ss_pred cceEEEEECCCCcccC
Confidence 5 68999999999884
Done!