BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035320
(67 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERS 55
STF GNPLA AV+IA+L V+ +EKL ERS
Sbjct: 280 STFGGNPLACAVSIAALEVLEEEKLTERS 308
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSRAFEG 60
ST+ GNPLA ++ + +LNV+ +EKL E + G
Sbjct: 310 STYGGNPLAASICVEALNVLINEKLCENAEKLGG 343
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERS 55
ST+ GNPL VAIA+L V+ +E LAE +
Sbjct: 321 STYGGNPLGCRVAIAALEVLEEENLAENA 349
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERS 55
ST+ GNPL VAIA+L V+ +E LAE +
Sbjct: 321 STYGGNPLGCRVAIAALEVLEEENLAENA 349
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERS 55
ST+ GNPL VAIA+L V+ +E LAE +
Sbjct: 321 STYGGNPLGCRVAIAALEVLEEENLAENA 349
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERS 55
ST+ GNPL VAIA+L V+ +E LAE +
Sbjct: 284 STYGGNPLGCRVAIAALEVLEEENLAENA 312
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERS 55
+TF GNP A A+A+ +L +I +E L ERS
Sbjct: 319 NTFGGNPAACALALKNLEIIENENLIERS 347
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 34.7 bits (78), Expect = 0.012, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 16 LMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERS 55
+M++L + ST+ GNPLA A+ + +L V+ +EKL E +
Sbjct: 280 VMLVLKPGEHGSTYGGNPLAAAICVEALKVLINEKLCENA 319
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 34.7 bits (78), Expect = 0.012, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAFE 59
TF GNP+A A A+A++ I + + ER+R E
Sbjct: 342 TFGGNPVACAAALATIETIERDGMVERARQIE 373
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAFEGI 61
T+ GNP+A A A+A++ I E L R++ E I
Sbjct: 325 TYGGNPIACAAALATIETIESEGLVARAQQIEKI 358
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 32 NPLATAVAIASLNVIRDEKLAERSRAFEG 60
NP+ A A+A+L V+R+ L R+RA E
Sbjct: 327 NPVTCAAAVAALGVMRELDLPARARAIEA 355
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERS 55
+TF GNPLA A +A++ + +L ER+
Sbjct: 282 TTFGGNPLAMAAGVAAIRYLERTRLWERA 310
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 32 NPLATAVAIASLNVIRDEKLAERSRA 57
NPLA A A+A ++ I E L R+RA
Sbjct: 330 NPLACAAALAVIDTIERENLVARARA 355
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62
ST+ GNPLA AVA A+ ++I ++ +GIH
Sbjct: 298 STYGGNPLACAVAGAAFDIINTPEV------LQGIH 327
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 29.3 bits (64), Expect = 0.51, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYLEER 67
T+ G+P+A AVA+ +L ++ +E + + R YL+E+
Sbjct: 324 TYSGHPVAAAVALENLRILEEENILDHVRNVAA-PYLKEK 362
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 1 MTTSTFYMYKNERTKLMVLLSILLNQS---TFDGNPLATA-----VAIASLNVIRDEKL 51
+ ST+++ ER KLM +IL+N S D N L A +A A L+V +E L
Sbjct: 206 LVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPL 264
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAF-----EGIHYLEER 67
T G+P+ A+A+ +++V+ +E LAE R E + ++ ER
Sbjct: 342 TASGHPVGCAIALKAIDVVXNEGLAENVRRLAPRFEERLKHIAER 386
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAF-----EGIHYLEER 67
T G+P+ A+A+ +++V+ +E LAE R E + ++ ER
Sbjct: 342 TASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAER 386
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAF-----EGIHYLEER 67
T G+P+ A+A+ +++V+ +E LAE R E + ++ ER
Sbjct: 336 TASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAER 380
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSR 56
T G+P+ A+A+ +++V+ +E LAE R
Sbjct: 334 TASGHPVGCAIALKAIDVVMNEGLAENVR 362
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 23 LLNQSTFDGNPLATAVAIASLNVI 46
L++ TF NPLA AV++AS+ ++
Sbjct: 333 LMHGPTFMANPLACAVSVASVELL 356
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 1 MTTSTFYMYKNERTKLMVLLSILLN---QSTFDGNPLATA-----VAIASLNVIRDE 49
+T T+++ ER KLM +IL+N D N L A +A A L+V +E
Sbjct: 214 LTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEE 270
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 23 LLNQSTFDGNPLATAVAIASLNVI 46
L+ TF NPLA AV++AS+ ++
Sbjct: 338 LMRGPTFMANPLACAVSVASVELL 361
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 23 LLNQSTFDGNPLATAVAIASLNVI 46
L+ TF NPLA AV++AS+ ++
Sbjct: 313 LMRGPTFMANPLACAVSVASVELL 336
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 7 YMYKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRD 48
Y + E + + L + T GNPLA A +A+L ++ +
Sbjct: 277 YAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE 318
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAE 53
ST+ GNPL A A + ++EK+ E
Sbjct: 277 STYGGNPLVCAGVNAVFEIFKEEKILE 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,579,514
Number of Sequences: 62578
Number of extensions: 42220
Number of successful extensions: 144
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 37
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)