Query 035320
Match_columns 67
No_of_seqs 127 out of 1113
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:57:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4992 ArgD Ornithine/acetylo 99.6 3.8E-15 8.1E-20 106.6 4.7 52 12-63 266-317 (404)
2 KOG1402 Ornithine aminotransfe 99.5 1E-14 2.2E-19 103.3 5.0 53 11-63 289-341 (427)
3 COG0160 GabT 4-aminobutyrate a 99.5 4.6E-14 1E-18 102.2 4.6 53 10-63 302-354 (447)
4 COG0161 BioA Adenosylmethionin 99.4 5.2E-13 1.1E-17 96.8 5.4 52 12-63 298-354 (449)
5 KOG1404 Alanine-glyoxylate ami 99.4 5.6E-13 1.2E-17 95.6 4.5 53 11-63 293-346 (442)
6 PRK05965 hypothetical protein; 99.3 1.5E-12 3.2E-17 93.7 5.3 54 10-63 296-356 (459)
7 PRK07030 adenosylmethionine--8 99.3 1.5E-12 3.3E-17 93.9 5.3 55 9-63 295-356 (466)
8 PRK07483 hypothetical protein; 99.3 1.7E-12 3.8E-17 93.0 5.3 56 8-63 279-338 (443)
9 PRK06943 adenosylmethionine--8 99.3 1.8E-12 3.9E-17 93.2 5.4 54 10-63 303-362 (453)
10 PRK07482 hypothetical protein; 99.3 2E-12 4.4E-17 93.0 5.3 54 10-63 301-361 (461)
11 TIGR03372 putres_am_tran putre 99.3 2.1E-12 4.5E-17 92.9 5.3 53 11-63 306-360 (442)
12 PRK07481 hypothetical protein; 99.3 3.2E-12 7E-17 91.6 5.5 55 9-63 293-354 (449)
13 PRK08742 adenosylmethionine--8 99.3 3.1E-12 6.8E-17 92.5 5.3 55 9-63 317-377 (472)
14 PRK07678 aminotransferase; Val 99.3 3.1E-12 6.8E-17 91.7 5.3 54 10-63 294-353 (451)
15 PRK06938 diaminobutyrate--2-ox 99.3 4.2E-12 9.1E-17 91.6 4.9 51 12-63 313-363 (464)
16 PRK06058 4-aminobutyrate amino 99.3 5.8E-12 1.3E-16 89.9 5.1 55 9-63 298-352 (443)
17 PRK12389 glutamate-1-semialdeh 99.3 6E-12 1.3E-16 89.5 5.0 53 11-63 280-335 (428)
18 PRK06931 diaminobutyrate--2-ox 99.3 6.8E-12 1.5E-16 90.3 5.0 52 11-63 306-357 (459)
19 PRK07036 hypothetical protein; 99.3 8.2E-12 1.8E-16 90.1 5.3 55 9-63 301-362 (466)
20 PRK06148 hypothetical protein; 99.3 7.3E-12 1.6E-16 97.1 5.3 54 10-63 865-919 (1013)
21 PLN02760 4-aminobutyrate:pyruv 99.3 8.4E-12 1.8E-16 91.0 5.3 54 10-63 341-401 (504)
22 PF00202 Aminotran_3: Aminotra 99.2 9.7E-12 2.1E-16 86.3 5.1 54 10-63 257-310 (339)
23 PRK11522 putrescine--2-oxoglut 99.2 1.1E-11 2.4E-16 89.4 5.5 54 10-63 312-367 (459)
24 PRK07480 putative aminotransfe 99.2 1.3E-11 2.9E-16 88.8 5.4 55 9-63 299-358 (456)
25 PRK06062 hypothetical protein; 99.2 1.9E-11 4.1E-16 87.8 5.5 53 10-62 295-350 (451)
26 KOG1403 Predicted alanine-glyo 99.2 1.5E-11 3.3E-16 87.0 4.5 54 11-64 291-346 (452)
27 PRK06105 aminotransferase; Pro 99.2 2.3E-11 4.9E-16 87.6 5.3 57 7-63 296-359 (460)
28 PRK06916 adenosylmethionine--8 99.2 3.3E-11 7.1E-16 86.8 5.3 55 9-63 304-365 (460)
29 PRK06917 hypothetical protein; 99.2 2.7E-11 5.9E-16 86.9 4.8 57 7-63 278-338 (447)
30 PRK07046 aminotransferase; Val 99.2 2.8E-11 6.1E-16 87.1 4.9 54 10-63 296-358 (453)
31 PRK12403 putative aminotransfe 99.2 4.4E-11 9.5E-16 86.1 5.3 53 11-63 304-361 (460)
32 PRK07986 adenosylmethionine--8 99.2 4.8E-11 1E-15 85.4 5.2 53 11-63 287-344 (428)
33 PRK06149 hypothetical protein; 99.1 7.3E-11 1.6E-15 91.2 5.2 54 10-63 825-879 (972)
34 PLN02482 glutamate-1-semialdeh 99.1 7.2E-11 1.6E-15 85.7 4.7 53 11-63 326-381 (474)
35 KOG1401 Acetylornithine aminot 99.1 1.1E-10 2.3E-15 84.1 4.6 53 11-63 287-342 (433)
36 TIGR00709 dat 2,4-diaminobutyr 99.1 1.3E-10 2.7E-15 83.1 4.7 53 10-63 286-338 (442)
37 PRK08593 4-aminobutyrate amino 99.1 2E-10 4.3E-15 82.4 5.3 55 9-63 286-340 (445)
38 PRK06173 adenosylmethionine--8 99.1 1.9E-10 4E-15 82.3 5.1 54 10-63 288-346 (429)
39 PRK13360 omega amino acid--pyr 99.1 2.1E-10 4.6E-15 82.3 5.3 53 11-63 297-356 (442)
40 PRK05630 adenosylmethionine--8 99.1 2.4E-10 5.1E-15 81.6 5.3 55 9-63 281-341 (422)
41 PRK03715 argD acetylornithine 99.1 1.7E-10 3.7E-15 81.5 4.1 52 11-63 260-311 (395)
42 PRK09792 4-aminobutyrate trans 99.1 2.6E-10 5.6E-15 81.1 5.1 55 9-63 277-331 (421)
43 PRK06082 4-aminobutyrate amino 99.1 2.8E-10 6.1E-15 82.0 5.2 53 10-63 309-362 (459)
44 PRK05639 4-aminobutyrate amino 99.0 3.1E-10 6.7E-15 81.8 5.1 54 9-63 301-354 (457)
45 PRK07495 4-aminobutyrate amino 99.0 3.9E-10 8.5E-15 80.5 5.1 56 8-63 276-331 (425)
46 PRK00615 glutamate-1-semialdeh 99.0 4.4E-10 9.6E-15 80.6 5.1 55 8-62 278-335 (433)
47 PRK09221 beta alanine--pyruvat 99.0 5.2E-10 1.1E-14 80.3 5.3 54 10-63 299-359 (445)
48 PLN02974 adenosylmethionine-8- 99.0 4.7E-10 1E-14 86.0 5.4 53 10-62 666-728 (817)
49 PRK06777 4-aminobutyrate amino 99.0 6.1E-10 1.3E-14 79.2 5.1 55 9-63 277-331 (421)
50 TIGR00700 GABAtrnsam 4-aminobu 99.0 1.1E-09 2.3E-14 77.7 5.2 55 9-63 276-330 (420)
51 PRK08117 4-aminobutyrate amino 99.0 1.2E-09 2.5E-14 77.6 5.2 55 9-63 286-340 (433)
52 PRK05964 adenosylmethionine--8 99.0 1.2E-09 2.6E-14 77.4 5.2 54 10-63 281-340 (423)
53 TIGR03246 arg_catab_astC succi 98.9 1.3E-09 2.8E-14 76.5 5.2 53 11-63 260-312 (397)
54 PRK06541 hypothetical protein; 98.9 1.2E-09 2.5E-14 78.9 5.0 57 7-63 299-359 (460)
55 PLN00144 acetylornithine trans 98.9 1.7E-09 3.7E-14 76.0 5.1 54 9-62 246-299 (382)
56 PRK04612 argD acetylornithine 98.9 2.1E-09 4.5E-14 76.5 5.3 54 10-63 267-320 (408)
57 TIGR00508 bioA adenosylmethion 98.9 2.2E-09 4.7E-14 76.7 5.3 54 10-63 289-347 (427)
58 PRK05769 4-aminobutyrate amino 98.9 1.8E-09 3.9E-14 77.4 5.0 53 9-63 300-352 (441)
59 PRK08297 L-lysine aminotransfe 98.9 2.2E-09 4.7E-14 77.1 5.2 42 22-63 318-359 (443)
60 TIGR00699 GABAtrns_euk 4-amino 98.9 1.4E-09 3.1E-14 78.9 3.9 43 21-63 340-382 (464)
61 COG0001 HemL Glutamate-1-semia 98.9 3E-09 6.5E-14 77.1 5.2 54 10-63 279-336 (432)
62 PRK04013 argD acetylornithine/ 98.9 3E-09 6.6E-14 74.9 4.7 37 22-58 249-285 (364)
63 PRK06209 glutamate-1-semialdeh 98.9 2.8E-09 6.1E-14 76.1 4.5 56 8-63 260-323 (431)
64 PRK06918 4-aminobutyrate amino 98.9 3.7E-09 8E-14 75.7 5.0 55 9-63 298-352 (451)
65 PRK08360 4-aminobutyrate amino 98.8 6.6E-09 1.4E-13 74.6 5.2 55 9-63 283-337 (443)
66 TIGR02407 ectoine_ectB diamino 98.8 5.2E-09 1.1E-13 74.3 4.5 53 10-63 275-328 (412)
67 TIGR00713 hemL glutamate-1-sem 98.8 8.5E-09 1.8E-13 72.6 4.8 56 7-62 271-329 (423)
68 PRK12381 bifunctional succinyl 98.8 1.3E-08 2.7E-13 71.8 5.2 56 8-63 261-316 (406)
69 PRK04073 rocD ornithine--oxo-a 98.8 1.3E-08 2.9E-13 71.2 5.2 55 9-63 266-320 (396)
70 TIGR03251 LAT_fam L-lysine 6-t 98.8 1.2E-08 2.5E-13 72.9 4.8 42 22-63 311-352 (431)
71 PRK03244 argD acetylornithine 98.7 1.9E-08 4.2E-13 70.0 5.2 55 9-63 262-316 (398)
72 PRK00062 glutamate-1-semialdeh 98.7 2.7E-08 5.8E-13 70.8 4.7 54 9-62 275-331 (426)
73 PLN02624 ornithine-delta-amino 98.7 3.7E-08 8E-13 71.2 5.4 55 9-63 304-358 (474)
74 PRK09264 diaminobutyrate--2-ox 98.7 2.8E-08 6.2E-13 70.7 4.7 54 9-63 278-332 (425)
75 PRK01278 argD acetylornithine 98.7 4.2E-08 9E-13 68.2 5.1 55 9-63 254-308 (389)
76 PRK02936 argD acetylornithine 98.5 1.6E-07 3.6E-12 64.8 5.1 56 8-63 245-300 (377)
77 TIGR01885 Orn_aminotrans ornit 98.5 2.6E-07 5.7E-12 64.7 5.2 55 9-63 266-320 (401)
78 PRK04260 acetylornithine amino 98.5 3E-07 6.5E-12 63.8 5.3 56 8-63 243-298 (375)
79 PRK00854 rocD ornithine--oxo-a 98.4 3.7E-07 8E-12 63.7 5.0 54 10-63 268-321 (401)
80 PRK02627 acetylornithine amino 98.4 6.9E-07 1.5E-11 61.8 5.1 55 9-63 261-315 (396)
81 PTZ00125 ornithine aminotransf 98.4 8.5E-07 1.8E-11 61.6 5.2 54 9-62 258-311 (400)
82 PRK08088 4-aminobutyrate amino 98.3 1.1E-06 2.4E-11 62.4 5.2 56 8-63 277-332 (425)
83 PRK05093 argD bifunctional N-s 98.3 1.3E-06 2.7E-11 61.4 5.1 55 9-63 263-317 (403)
84 cd00610 OAT_like Acetyl ornith 98.3 1.9E-06 4E-11 59.7 5.3 55 9-63 270-326 (413)
85 PLN02822 serine palmitoyltrans 97.9 1.7E-05 3.7E-10 57.6 4.1 54 10-63 325-381 (481)
86 TIGR00707 argD acetylornithine 97.8 4.6E-05 1E-09 52.3 5.3 54 9-62 249-302 (379)
87 PLN03227 serine palmitoyltrans 97.8 3.9E-05 8.5E-10 54.2 4.7 54 10-63 219-275 (392)
88 PRK07505 hypothetical protein; 96.6 0.0028 6.1E-08 44.4 3.8 44 11-54 262-307 (402)
89 TIGR01821 5aminolev_synth 5-am 96.4 0.0068 1.5E-07 42.4 4.8 54 9-62 255-311 (402)
90 PRK09064 5-aminolevulinate syn 96.4 0.0085 1.8E-07 41.9 4.8 54 9-62 256-312 (407)
91 KOG1405 4-aminobutyrate aminot 96.2 0.0046 9.9E-08 45.2 2.8 42 22-63 360-401 (484)
92 PRK13393 5-aminolevulinate syn 96.2 0.013 2.7E-07 41.2 4.9 53 9-61 255-310 (406)
93 PRK05958 8-amino-7-oxononanoat 95.8 0.022 4.9E-07 38.9 4.7 53 10-62 248-303 (385)
94 TIGR01825 gly_Cac_T_rel pyrido 94.1 0.13 2.7E-06 35.5 4.6 54 9-62 241-297 (385)
95 PLN02483 serine palmitoyltrans 93.7 0.15 3.3E-06 37.3 4.7 39 9-47 319-359 (489)
96 TIGR01822 2am3keto_CoA 2-amino 92.6 0.3 6.5E-06 33.7 4.7 53 10-62 250-305 (393)
97 PRK07179 hypothetical protein; 92.6 0.32 6.9E-06 34.2 4.8 51 10-62 260-315 (407)
98 TIGR03576 pyridox_MJ0158 pyrid 92.4 0.24 5.2E-06 34.7 4.1 51 9-59 213-263 (346)
99 TIGR00858 bioF 8-amino-7-oxono 91.8 0.45 9.6E-06 32.0 4.6 54 9-62 225-281 (360)
100 cd00613 GDC-P Glycine cleavage 90.8 0.47 1E-05 32.8 4.1 38 26-63 281-321 (398)
101 PRK06939 2-amino-3-ketobutyrat 90.5 0.69 1.5E-05 31.7 4.7 53 9-61 253-308 (397)
102 PRK13392 5-aminolevulinate syn 89.8 0.86 1.9E-05 32.0 4.8 53 9-61 256-311 (410)
103 cd06454 KBL_like KBL_like; thi 89.5 0.92 2E-05 30.5 4.6 54 9-62 210-266 (349)
104 PLN02955 8-amino-7-oxononanoat 88.3 0.97 2.1E-05 33.7 4.3 50 10-60 328-381 (476)
105 PRK03317 histidinol-phosphate 84.3 2.9 6.3E-05 28.8 4.8 36 9-46 239-274 (368)
106 cd06502 TA_like Low-specificit 79.8 1.7 3.6E-05 29.2 2.3 36 10-45 206-243 (338)
107 cd00609 AAT_like Aspartate ami 78.3 3.1 6.8E-05 27.5 3.2 51 11-61 217-270 (350)
108 PRK13238 tnaA tryptophanase/L- 75.9 8.4 0.00018 28.2 5.1 36 11-46 271-312 (460)
109 PRK08153 histidinol-phosphate 75.6 5.8 0.00013 27.5 4.0 34 9-44 234-267 (369)
110 COG0156 BioF 7-keto-8-aminopel 75.4 9.2 0.0002 27.8 5.1 54 9-63 250-307 (388)
111 PRK05937 8-amino-7-oxononanoat 75.0 11 0.00023 26.3 5.2 51 12-62 223-277 (370)
112 PRK06108 aspartate aminotransf 71.3 5.2 0.00011 27.4 3.0 37 9-45 243-279 (382)
113 PRK07324 transaminase; Validat 67.9 8.6 0.00019 26.8 3.5 36 9-44 233-268 (373)
114 PRK03321 putative aminotransfe 64.8 18 0.00039 24.7 4.5 34 9-44 227-260 (352)
115 PRK06225 aspartate aminotransf 63.8 13 0.00028 25.7 3.7 36 9-45 236-271 (380)
116 PRK03158 histidinol-phosphate 63.5 17 0.00036 24.9 4.2 34 9-44 233-266 (359)
117 COG0770 MurF UDP-N-acetylmuram 58.5 8.5 0.00018 28.5 2.2 24 27-50 333-356 (451)
118 PRK02731 histidinol-phosphate 53.3 29 0.00064 23.7 4.1 35 8-44 235-269 (367)
119 PRK13520 L-tyrosine decarboxyl 52.7 16 0.00035 24.8 2.7 34 27-62 259-295 (371)
120 cd00614 CGS_like CGS_like: Cys 51.6 9.3 0.0002 26.7 1.4 52 11-62 200-254 (369)
121 PRK14809 histidinol-phosphate 49.7 44 0.00096 22.9 4.5 34 9-44 233-266 (357)
122 PRK06348 aspartate aminotransf 48.0 34 0.00073 23.8 3.7 36 9-44 245-280 (384)
123 TIGR01141 hisC histidinol-phos 45.4 49 0.0011 22.3 4.1 35 9-45 221-255 (346)
124 TIGR01140 L_thr_O3P_dcar L-thr 44.8 59 0.0013 22.1 4.5 34 9-44 205-238 (330)
125 PRK07682 hypothetical protein; 43.8 36 0.00078 23.4 3.3 36 9-44 237-272 (378)
126 COG1921 SelA Selenocysteine sy 43.1 29 0.00063 25.6 2.9 45 3-50 229-273 (395)
127 PRK09295 bifunctional cysteine 42.0 83 0.0018 22.0 5.0 32 31-62 279-313 (406)
128 PRK06460 hypothetical protein; 41.9 41 0.00088 23.7 3.4 54 9-62 203-258 (376)
129 PF13524 Glyco_trans_1_2: Glyc 40.5 52 0.0011 17.9 3.1 46 14-62 31-76 (92)
130 PF02875 Mur_ligase_C: Mur lig 40.0 41 0.00089 18.6 2.7 18 29-46 20-37 (91)
131 TIGR03301 PhnW-AepZ 2-aminoeth 39.8 1.1E+02 0.0025 20.3 5.4 23 28-50 233-255 (355)
132 COG0599 Uncharacterized homolo 38.8 26 0.00056 21.0 1.8 36 11-49 85-120 (124)
133 PRK05764 aspartate aminotransf 38.4 55 0.0012 22.6 3.6 36 9-44 249-284 (393)
134 cd00616 AHBA_syn 3-amino-5-hyd 36.4 63 0.0014 21.7 3.5 20 27-46 211-230 (352)
135 TIGR01979 sufS cysteine desulf 36.2 1.1E+02 0.0023 21.2 4.8 31 32-62 274-307 (403)
136 PF06786 UPF0253: Uncharacteri 36.0 42 0.00091 18.7 2.2 29 33-61 24-53 (66)
137 PRK08912 hypothetical protein; 35.5 68 0.0015 22.2 3.7 35 9-43 243-277 (387)
138 TIGR01976 am_tr_V_VC1184 cyste 34.8 1.1E+02 0.0024 21.1 4.6 14 9-22 226-239 (397)
139 TIGR01325 O_suc_HS_sulf O-succ 34.0 42 0.00091 23.6 2.5 50 11-62 214-267 (380)
140 PRK13580 serine hydroxymethylt 33.7 85 0.0018 23.7 4.1 50 12-62 298-355 (493)
141 PRK00950 histidinol-phosphate 32.6 1.1E+02 0.0023 20.8 4.3 34 9-44 234-267 (361)
142 PRK08249 cystathionine gamma-s 31.6 62 0.0013 23.1 3.0 53 10-62 223-277 (398)
143 PRK01533 histidinol-phosphate 31.2 1.2E+02 0.0027 21.0 4.5 34 9-44 233-266 (366)
144 PF13982 YbfN: YbfN-like lipop 30.2 71 0.0015 18.8 2.6 28 26-53 19-46 (89)
145 PRK04964 hypothetical protein; 29.0 57 0.0012 18.2 2.0 29 33-61 24-53 (66)
146 PRK06959 putative threonine-ph 28.5 1.4E+02 0.003 20.6 4.2 34 9-44 209-242 (339)
147 TIGR03812 tyr_de_CO2_Arch tyro 28.1 81 0.0018 21.4 3.0 31 32-62 267-300 (373)
148 PRK08960 hypothetical protein; 27.0 1E+02 0.0023 21.3 3.5 36 9-44 245-280 (387)
149 PTZ00094 serine hydroxymethylt 26.7 71 0.0015 23.0 2.6 33 30-62 280-315 (452)
150 PRK09082 methionine aminotrans 26.6 1.1E+02 0.0024 21.2 3.5 36 9-44 247-282 (386)
151 PRK14093 UDP-N-acetylmuramoyla 26.6 73 0.0016 23.2 2.7 20 27-46 344-363 (479)
152 TIGR01814 kynureninase kynuren 26.6 1.1E+02 0.0024 21.4 3.6 31 32-62 288-321 (406)
153 PRK07309 aromatic amino acid a 26.4 97 0.0021 21.6 3.2 36 9-44 248-283 (391)
154 COG2082 CobH Precorrin isomera 26.4 78 0.0017 21.4 2.6 25 24-48 184-208 (210)
155 PRK07550 hypothetical protein; 26.2 83 0.0018 21.8 2.9 37 9-45 247-283 (386)
156 PRK09147 succinyldiaminopimela 25.4 1.5E+02 0.0032 20.6 4.0 35 9-43 256-290 (396)
157 TIGR00162 conserved hypothetic 25.0 71 0.0015 20.7 2.2 35 24-58 118-157 (188)
158 PRK08535 translation initiatio 24.9 1.5E+02 0.0034 20.6 4.0 36 27-62 18-59 (310)
159 PRK05954 precorrin-8X methylmu 24.3 81 0.0018 21.1 2.4 22 24-45 177-198 (203)
160 PF07689 KaiB: KaiB domain; I 24.3 85 0.0018 17.9 2.2 22 30-51 5-26 (82)
161 PRK09148 aminotransferase; Val 24.1 1.3E+02 0.0028 21.2 3.5 36 9-44 249-284 (405)
162 PRK06107 aspartate aminotransf 23.9 1.3E+02 0.0028 21.1 3.5 36 9-44 252-287 (402)
163 COG1698 Uncharacterized protei 23.9 83 0.0018 18.7 2.1 25 33-57 54-79 (93)
164 KOG1360 5-aminolevulinate synt 23.8 1.7E+02 0.0037 22.4 4.2 48 9-57 381-433 (570)
165 TIGR03392 FeS_syn_CsdA cystein 23.7 2.5E+02 0.0055 19.4 4.9 29 33-61 273-304 (398)
166 PRK07777 aminotransferase; Val 23.7 1.3E+02 0.0027 20.9 3.4 35 9-43 243-277 (387)
167 PF10711 DUF2513: Hypothetical 23.6 61 0.0013 18.8 1.6 18 39-56 73-90 (102)
168 PRK10773 murF UDP-N-acetylmura 23.4 86 0.0019 22.6 2.6 20 27-46 332-351 (453)
169 PRK13479 2-aminoethylphosphona 22.6 2.6E+02 0.0056 19.0 5.0 21 29-49 240-260 (368)
170 PF02570 CbiC: Precorrin-8X me 22.4 77 0.0017 21.1 2.0 21 24-44 175-195 (198)
171 PLN00175 aminotransferase fami 22.3 1.7E+02 0.0037 20.7 3.9 36 9-44 270-305 (413)
172 PF04852 DUF640: Protein of un 22.2 1.1E+02 0.0023 19.4 2.5 25 24-48 107-131 (132)
173 TIGR03715 KxYKxGKxW KxYKxGKxW 22.2 53 0.0011 15.0 0.9 15 6-20 4-18 (29)
174 KOG1288 Amino acid transporter 22.1 51 0.0011 26.7 1.2 40 5-44 386-434 (945)
175 TIGR03539 DapC_actino succinyl 21.9 1.7E+02 0.0036 20.1 3.7 35 9-43 228-262 (357)
176 PRK15481 transcriptional regul 21.6 1.6E+02 0.0035 20.8 3.6 36 9-44 292-327 (431)
177 PRK05387 histidinol-phosphate 21.6 2.5E+02 0.0054 18.9 4.4 36 9-44 221-257 (353)
178 COG3517 Predicted component of 21.6 19 0.00041 27.2 -1.1 48 11-58 122-184 (495)
179 TIGR02326 transamin_PhnW 2-ami 21.4 2.8E+02 0.006 18.9 5.5 22 28-49 238-259 (363)
180 PRK01688 histidinol-phosphate 21.3 2.7E+02 0.006 19.0 4.7 34 9-44 224-257 (351)
181 cd08320 Pyrin_NALPs Pyrin deat 21.2 1.8E+02 0.0038 16.6 3.2 29 29-57 54-82 (86)
182 COG3855 Fbp Uncharacterized pr 21.1 2E+02 0.0044 22.4 4.1 30 13-42 207-248 (648)
183 PRK06264 cbiC precorrin-8X met 20.5 1E+02 0.0022 20.8 2.3 25 24-48 183-207 (210)
184 PRK14808 histidinol-phosphate 20.2 3E+02 0.0065 18.8 4.8 34 9-44 213-246 (335)
185 KOG3740 Uncharacterized conser 20.1 82 0.0018 24.9 2.0 35 7-41 435-470 (706)
No 1
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.56 E-value=3.8e-15 Score=106.61 Aligned_cols=52 Identities=35% Similarity=0.377 Sum_probs=48.9
Q ss_pred ccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 12 ERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 12 g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++.+.|+.|+|||+||||+||++.++|+++.+++++++++++|++|+
T Consensus 266 a~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~ 317 (404)
T COG4992 266 ATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLL 317 (404)
T ss_pred EchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999999999999999874
No 2
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.53 E-value=1e-14 Score=103.34 Aligned_cols=53 Identities=40% Similarity=0.485 Sum_probs=50.5
Q ss_pred cccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
..+++||-.+.|+.|++||+||||+||+|.|+|++|++++|++|++.+|+.|+
T Consensus 289 l~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~ 341 (427)
T KOG1402|consen 289 LADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILR 341 (427)
T ss_pred EecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999875
No 3
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.47 E-value=4.6e-14 Score=102.15 Aligned_cols=53 Identities=34% Similarity=0.404 Sum_probs=49.9
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++||+ +.++.|++||+|||++||||+|+|++|++++|++|++++|++|+
T Consensus 302 vv~r~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~ 354 (447)
T COG0160 302 VVGRAEIMD-WPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLR 354 (447)
T ss_pred EeccHHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 468999999 77899999999999999999999999999999999999999875
No 4
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=99.39 E-value=5.2e-13 Score=96.79 Aligned_cols=52 Identities=29% Similarity=0.484 Sum_probs=47.7
Q ss_pred ccHHHHHHhcc-----cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 12 ERTKLMVLLSI-----LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 12 g~~~i~~~~~~-----~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++|++.|.. +.|+.||+|||++||||+|+|++++++++++|++++|.+|.
T Consensus 298 ~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~ 354 (449)
T COG0161 298 TSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQ 354 (449)
T ss_pred hhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 68999998843 47999999999999999999999999999999999999874
No 5
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=99.37 E-value=5.6e-13 Score=95.64 Aligned_cols=53 Identities=28% Similarity=0.412 Sum_probs=48.9
Q ss_pred cccHHHHHHhccc-CCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSIL-LNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~-~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++||++.+..- .|++||+|||++||+++|+|++|++++|+||+++.|.||+
T Consensus 293 vtt~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~ 346 (442)
T KOG1404|consen 293 VTTPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLL 346 (442)
T ss_pred ecCHHHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3589999999754 4999999999999999999999999999999999999986
No 6
>PRK05965 hypothetical protein; Provisional
Probab=99.34 E-value=1.5e-12 Score=93.69 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=48.9
Q ss_pred ccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.+ ..|++||+|||++|||++++|++++++++++|++++|++|.
T Consensus 296 v~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~ 356 (459)
T PRK05965 296 VLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFA 356 (459)
T ss_pred EEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4589999998853 36999999999999999999999999999999999999874
No 7
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.34 E-value=1.5e-12 Score=93.87 Aligned_cols=55 Identities=24% Similarity=0.386 Sum_probs=49.3
Q ss_pred hccccHHHHHHhc-------ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLS-------ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~-------~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-.+++++|++.+. +..|++||+|||++|||++++|++++++++++|++++|++|+
T Consensus 295 av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~ 356 (466)
T PRK07030 295 AVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMA 356 (466)
T ss_pred EEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3568999999874 246999999999999999999999999999999999999874
No 8
>PRK07483 hypothetical protein; Provisional
Probab=99.33 E-value=1.7e-12 Score=92.96 Aligned_cols=56 Identities=20% Similarity=0.128 Sum_probs=49.9
Q ss_pred hhccccHHHHHHhcc----cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVLLSI----LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~----~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
--.+++++|++.+.+ ..|++||+|||++||+++++|++|+++++++|++++|++|+
T Consensus 279 ~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~ 338 (443)
T PRK07483 279 GAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLR 338 (443)
T ss_pred EEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345689999998864 26999999999999999999999999999999999999874
No 9
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.33 E-value=1.8e-12 Score=93.17 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=48.7
Q ss_pred ccccHHHHHHhcc------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.+ ..|++||+|||++||+++++|+++++++++++++++|++|.
T Consensus 303 v~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~ 362 (453)
T PRK06943 303 VLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSARLR 362 (453)
T ss_pred EEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4589999998853 25999999999999999999999999999999999999874
No 10
>PRK07482 hypothetical protein; Provisional
Probab=99.33 E-value=2e-12 Score=92.97 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=48.2
Q ss_pred ccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.. ..|++||+|||++||||+|+|+++++++++++++++|++|.
T Consensus 301 v~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~ 361 (461)
T PRK07482 301 SIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFR 361 (461)
T ss_pred eeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4578999998752 36999999999999999999999999999999999999874
No 11
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.33 E-value=2.1e-12 Score=92.90 Aligned_cols=53 Identities=26% Similarity=0.425 Sum_probs=48.4
Q ss_pred cccHHHHHHh--cccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLL--SILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~--~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++|++.+ .++.|++||+|||++|||++|+|++|+++++++|++++|++|+
T Consensus 306 v~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~ 360 (442)
T TIGR03372 306 IATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLL 360 (442)
T ss_pred EecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4689999988 3457999999999999999999999999999999999999874
No 12
>PRK07481 hypothetical protein; Provisional
Probab=99.31 E-value=3.2e-12 Score=91.61 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=49.4
Q ss_pred hccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-.+++++|++.+.+ ..|++||+|||++|||++++|+++++++++++++++|++|.
T Consensus 293 av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 354 (449)
T PRK07481 293 ATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLL 354 (449)
T ss_pred EEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35689999998853 36999999999999999999999999999999999999874
No 13
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.31 E-value=3.1e-12 Score=92.52 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=49.1
Q ss_pred hccccHHHHHHhc------ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLS------ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~------~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-.+++++|++.+. ++.|++||+|||++|||++++|++++++++++|++++|++|.
T Consensus 317 av~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~ 377 (472)
T PRK08742 317 AVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMT 377 (472)
T ss_pred eeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4458999999874 236999999999999999999999999999999999999875
No 14
>PRK07678 aminotransferase; Validated
Probab=99.31 E-value=3.1e-12 Score=91.73 Aligned_cols=54 Identities=26% Similarity=0.429 Sum_probs=48.8
Q ss_pred ccccHHHHHHhcc------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.+ ..|++||+|||++|||++++|+++++++++++++++|++|+
T Consensus 294 v~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~ 353 (451)
T PRK07678 294 TAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLL 353 (451)
T ss_pred EEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4689999998863 35999999999999999999999999999999999999874
No 15
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.28 E-value=4.2e-12 Score=91.58 Aligned_cols=51 Identities=29% Similarity=0.283 Sum_probs=46.5
Q ss_pred ccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 12 ERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 12 g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++ +.+.++.|++||+|||++||||+|+|++++++++++|++++|++|.
T Consensus 313 ~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~ 363 (464)
T PRK06938 313 YREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLR 363 (464)
T ss_pred ehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 57775 7777788999999999999999999999999999999999999874
No 16
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.27 E-value=5.8e-12 Score=89.92 Aligned_cols=55 Identities=27% Similarity=0.374 Sum_probs=50.7
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
..+++++|++.+.+..|++||+|||++||||+++|+++++++++++++++|++|.
T Consensus 298 av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~ 352 (443)
T PRK06058 298 AVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMT 352 (443)
T ss_pred EEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3458999999998888999999999999999999999999999999999999874
No 17
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.27 E-value=6e-12 Score=89.53 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=48.4
Q ss_pred cccHHHHHHhcc---cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSI---LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~---~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++|++.+.+ ..|++||+|||++|||++|+|+++++++++++++++|++|+
T Consensus 280 ~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~ 335 (428)
T PRK12389 280 GGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLE 335 (428)
T ss_pred eEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 589999999853 46999999999999999999999999999999999999874
No 18
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.26 E-value=6.8e-12 Score=90.32 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=46.6
Q ss_pred cccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++ ++.+.++.|++||+|||++||+|+++|++++++++++|++++|++|+
T Consensus 306 ~~~~~-~~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~ 357 (459)
T PRK06931 306 GIKKE-FDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLK 357 (459)
T ss_pred eeHHH-HhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35666 48887788999999999999999999999999999999999999874
No 19
>PRK07036 hypothetical protein; Provisional
Probab=99.26 E-value=8.2e-12 Score=90.05 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=49.1
Q ss_pred hccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-.+++++|++.+.+ ..|++||+|||++||+++++|++|++++++++++++|++|+
T Consensus 301 av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~ 362 (466)
T PRK07036 301 AVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFE 362 (466)
T ss_pred EEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34589999998852 36899999999999999999999999999999999999874
No 20
>PRK06148 hypothetical protein; Provisional
Probab=99.26 E-value=7.3e-12 Score=97.09 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=49.5
Q ss_pred ccccHHHHHHhccc-CCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSIL-LNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~-~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.++ .|++||+|||++|||++++|++|+++++++|++++|++|+
T Consensus 865 v~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~ 919 (1013)
T PRK06148 865 VVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLL 919 (1013)
T ss_pred EEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 35799999999765 4899999999999999999999999999999999999874
No 21
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.26 E-value=8.4e-12 Score=90.96 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=48.9
Q ss_pred ccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.+ +.|++||+|||++||+++++|++|++++++++++++|++|+
T Consensus 341 v~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~ 401 (504)
T PLN02760 341 VLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQ 401 (504)
T ss_pred EeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5689999998853 36999999999999999999999999999999999999874
No 22
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=99.25 E-value=9.7e-12 Score=86.26 Aligned_cols=54 Identities=31% Similarity=0.407 Sum_probs=49.8
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.+..|++||+|||++|++++++|+++++++++++++++|++|.
T Consensus 257 v~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~ 310 (339)
T PF00202_consen 257 VLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLR 310 (339)
T ss_dssp EEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHH
Confidence 458999999998888999999999999999999999999999999999999874
No 23
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.25 E-value=1.1e-11 Score=89.38 Aligned_cols=54 Identities=28% Similarity=0.440 Sum_probs=48.6
Q ss_pred ccccHHHHHHhc--ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLS--ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~--~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+. ++.|++||+|||++||+++|+|++|++++++++++++|++|+
T Consensus 312 v~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~ 367 (459)
T PRK11522 312 TIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLL 367 (459)
T ss_pred EEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 346889999874 567999999999999999999999999999999999999875
No 24
>PRK07480 putative aminotransferase; Validated
Probab=99.24 E-value=1.3e-11 Score=88.78 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=48.3
Q ss_pred hccccHHHHHHh--cc--cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHH-HHhhcccc
Q 035320 9 YKNERTKLMVLL--SI--LLNQSTFDGNPLATAVAIASLNVIRDEKLAERS-RAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~--~~--~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~-~~~G~~L~ 63 (67)
-.+++++|++.+ .+ ..|++||+|||++|||++++|++++++++++++ +++|++|+
T Consensus 299 av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~ 358 (456)
T PRK07480 299 AVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQ 358 (456)
T ss_pred EEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345799999988 23 369999999999999999999999999999999 69999874
No 25
>PRK06062 hypothetical protein; Provisional
Probab=99.22 E-value=1.9e-11 Score=87.79 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=47.0
Q ss_pred ccccHHHHHHhcc--cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhc-cc
Q 035320 10 KNERTKLMVLLSI--LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEG-IH 62 (67)
Q Consensus 10 ~~g~~~i~~~~~~--~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~-~L 62 (67)
.+++++|++.+.+ ..|++||+|||++||+++++|++|++++++++++++|+ +|
T Consensus 295 v~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l 350 (451)
T PRK06062 295 VAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVL 350 (451)
T ss_pred EEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4578899999864 36999999999999999999999999999999999994 55
No 26
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=99.21 E-value=1.5e-11 Score=86.99 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=48.9
Q ss_pred cccHHHHHHhcc--cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccccc
Q 035320 11 NERTKLMVLLSI--LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYL 64 (67)
Q Consensus 11 ~g~~~i~~~~~~--~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~~ 64 (67)
+.+++|+++|.. ....+||+|||++||+++|+++++++++|++|++++|++|.+
T Consensus 291 attkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~ 346 (452)
T KOG1403|consen 291 ATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEV 346 (452)
T ss_pred eccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 468999999975 367799999999999999999999999999999999998864
No 27
>PRK06105 aminotransferase; Provisional
Probab=99.20 E-value=2.3e-11 Score=87.58 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=49.9
Q ss_pred hhhccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 7 YMYKNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 7 ~~~~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+-..+++++|++.+.+ +.|++||+|||++||+++++|++|++++++++++++|++|.
T Consensus 296 ~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~ 359 (460)
T PRK06105 296 LSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQ 359 (460)
T ss_pred ceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3345689999998853 24899999999999999999999999999999999999874
No 28
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.19 E-value=3.3e-11 Score=86.76 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=48.9
Q ss_pred hccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-.+++++|++.+.+ ..|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 304 av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 365 (460)
T PRK06916 304 ITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVA 365 (460)
T ss_pred eeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45689999998742 36999999999999999999999999999999999999864
No 29
>PRK06917 hypothetical protein; Provisional
Probab=99.18 E-value=2.7e-11 Score=86.92 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=50.2
Q ss_pred hhhccccHHHHHHhcc----cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 7 YMYKNERTKLMVLLSI----LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 7 ~~~~~g~~~i~~~~~~----~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+-..++++++++.+.+ ..|++||+|||++|||++++|+++++++++++++++|++|+
T Consensus 278 i~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 338 (447)
T PRK06917 278 IAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLI 338 (447)
T ss_pred eEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 3456689999998854 35889999999999999999999999999999999999874
No 30
>PRK07046 aminotransferase; Validated
Probab=99.18 E-value=2.8e-11 Score=87.11 Aligned_cols=54 Identities=19% Similarity=0.013 Sum_probs=48.2
Q ss_pred ccccHHHHHHhcc---------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI---------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~---------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+|+++||+.+.+ ..|++||+|||++|||++++|+++++++++++++++|++|+
T Consensus 296 v~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~ 358 (453)
T PRK07046 296 YGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLA 358 (453)
T ss_pred eeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4689999998852 25889999999999999999999999999999999999873
No 31
>PRK12403 putative aminotransferase; Provisional
Probab=99.17 E-value=4.4e-11 Score=86.10 Aligned_cols=53 Identities=28% Similarity=0.367 Sum_probs=46.8
Q ss_pred cccHHHHHHhcc----cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHH-Hhhcccc
Q 035320 11 NERTKLMVLLSI----LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSR-AFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~----~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~-~~G~~L~ 63 (67)
++++++++.+.+ +.|++||+|||++||+++|+|++|++++++++++ ++|++|+
T Consensus 304 v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~ 361 (460)
T PRK12403 304 VLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQ 361 (460)
T ss_pred EECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 378999998842 3599999999999999999999999999999996 9999864
No 32
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.16 E-value=4.8e-11 Score=85.42 Aligned_cols=53 Identities=30% Similarity=0.315 Sum_probs=47.9
Q ss_pred cccHHHHHHhccc-----CCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSIL-----LNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~-----~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++|++.+.+. .|++||+|||++||+++++|++++++++++|++++|++|+
T Consensus 287 ~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~ 344 (428)
T PRK07986 287 LTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLR 344 (428)
T ss_pred hchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4789999988542 5999999999999999999999999999999999999874
No 33
>PRK06149 hypothetical protein; Provisional
Probab=99.13 E-value=7.3e-11 Score=91.16 Aligned_cols=54 Identities=26% Similarity=0.323 Sum_probs=48.8
Q ss_pred ccccHHHHHHhcc-cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.+ +.+++||+|||++||+|+++|++|+++++++|++++|++|+
T Consensus 825 v~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~ 879 (972)
T PRK06149 825 VITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLK 879 (972)
T ss_pred EEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4589999999875 56779999999999999999999999999999999999874
No 34
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.12 E-value=7.2e-11 Score=85.66 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=48.4
Q ss_pred cccHHHHHHhcc---cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSI---LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~---~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+|+++|++.+.+ ..|++||+|||++|||++++|+++++++++++++++|++|+
T Consensus 326 ~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~ 381 (474)
T PLN02482 326 GGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLI 381 (474)
T ss_pred EEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 589999999853 46999999999999999999999999999999999999874
No 35
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.10 E-value=1.1e-10 Score=84.11 Aligned_cols=53 Identities=25% Similarity=0.294 Sum_probs=49.3
Q ss_pred cccHHHHHHhcccC---CCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSILL---NQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~~---h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++|++.+.++. |++||+|||++|++|..+|+.+.+++.+.++..+|+.|+
T Consensus 287 ~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~ 342 (433)
T KOG1401|consen 287 GVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELR 342 (433)
T ss_pred eehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 58999999998764 599999999999999999999999999999999999875
No 36
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.09 E-value=1.3e-10 Score=83.15 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=46.7
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++ ++.+.+..|++||+|||++||||+++|+++++++++++++++|++|.
T Consensus 286 v~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~ 338 (442)
T TIGR00709 286 LLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERIT 338 (442)
T ss_pred EEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 346777 47666678999999999999999999999999999999999999874
No 37
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.08 E-value=2e-10 Score=82.38 Aligned_cols=55 Identities=27% Similarity=0.285 Sum_probs=50.4
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
..++++++++.+.+..|.+||+|||++||+++++|+++++++++++++++|++|+
T Consensus 286 av~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 340 (445)
T PRK08593 286 AIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYAR 340 (445)
T ss_pred EEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4568999999987778899999999999999999999999999999999999874
No 38
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.08 E-value=1.9e-10 Score=82.34 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=47.8
Q ss_pred ccccHHHHHHhcc-----cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-----LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-----~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.+ ..|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~ 346 (429)
T PRK06173 288 TITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLK 346 (429)
T ss_pred EEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3478999998853 36999999999999999999999999999999999999863
No 39
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.07 E-value=2.1e-10 Score=82.25 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=47.2
Q ss_pred cccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++|++.+.. ..|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 297 ~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 356 (442)
T PRK13360 297 FVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWE 356 (442)
T ss_pred EEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 479999998743 25899999999999999999999999999999999999874
No 40
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.07 E-value=2.4e-10 Score=81.61 Aligned_cols=55 Identities=33% Similarity=0.351 Sum_probs=48.6
Q ss_pred hccccHHHHHHhcc------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSI------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
..+++++|++.+.. ..|++||+|||++||+++++|++++++++.++++++|++|+
T Consensus 281 av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l~ 341 (422)
T PRK05630 281 ATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELI 341 (422)
T ss_pred eeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 44689999998742 26999999999999999999999999999999999999874
No 41
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.06 E-value=1.7e-10 Score=81.52 Aligned_cols=52 Identities=23% Similarity=0.276 Sum_probs=46.2
Q ss_pred cccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++++ .+.++.|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 260 ~~~~~i~-~~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~ 311 (395)
T PRK03715 260 LAKAEVA-VFEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLK 311 (395)
T ss_pred EEccccc-cccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4788886 455667999999999999999999999999999999999999874
No 42
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.06 E-value=2.6e-10 Score=81.06 Aligned_cols=55 Identities=31% Similarity=0.257 Sum_probs=50.5
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.+..|++||+|||++|+|++++|+++++++++++++++|+++.
T Consensus 277 av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~ 331 (421)
T PRK09792 277 GVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLK 331 (421)
T ss_pred EEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4568999999998778999999999999999999999999999999999999864
No 43
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.05 E-value=2.8e-10 Score=82.00 Aligned_cols=53 Identities=28% Similarity=0.309 Sum_probs=45.8
Q ss_pred ccccHHHHHHhcc-cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.. ..| +||+|||++||+++++|+++++++++++++++|++|+
T Consensus 309 v~~~~~i~~~~~~~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 362 (459)
T PRK06082 309 MITKDKYNTAAQISLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMR 362 (459)
T ss_pred EEEcHHHHhhccCCCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3478888876643 346 8999999999999999999999999999999999874
No 44
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.04 E-value=3.1e-10 Score=81.82 Aligned_cols=54 Identities=26% Similarity=0.198 Sum_probs=48.1
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
..++++++++ +..+.|.+||+|||++|||++++|+++++++++++++++|++|+
T Consensus 301 av~~~~~i~~-~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 354 (457)
T PRK05639 301 GVIGRKELMD-LTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIK 354 (457)
T ss_pred eEEehHHHHh-hcCCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4568999999 44456889999999999999999999999999999999999874
No 45
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.03 E-value=3.9e-10 Score=80.47 Aligned_cols=56 Identities=30% Similarity=0.307 Sum_probs=51.2
Q ss_pred hhccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-+.++++++++.+.+..|++||+|||++||+++++|++++++++.++++++|++|+
T Consensus 276 gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 331 (425)
T PRK07495 276 AAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLK 331 (425)
T ss_pred eEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 34568999999998888999999999999999999999999999999999999874
No 46
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.02 E-value=4.4e-10 Score=80.64 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=49.1
Q ss_pred hhccccHHHHHHhcc---cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 035320 8 MYKNERTKLMVLLSI---LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~---~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L 62 (67)
-..++++++++.+.+ ..|++||+|||++|||++++|+++++++++++++++|++|
T Consensus 278 ~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l 335 (433)
T PRK00615 278 AAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNF 335 (433)
T ss_pred eeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 345689999998853 3589999999999999999999999999999999999987
No 47
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.02 E-value=5.2e-10 Score=80.32 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=47.9
Q ss_pred ccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.. ..|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 299 v~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~ 359 (445)
T PRK09221 299 VIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFE 359 (445)
T ss_pred eEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4578999998742 25889999999999999999999999999999999999874
No 48
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=99.02 E-value=4.7e-10 Score=85.98 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=42.3
Q ss_pred ccccHHHHHHhcc------cCCCCCCCCCHHHHHHHHHHHHHHhhhh----HHHHHHHhhccc
Q 035320 10 KNERTKLMVLLSI------LLNQSTFDGNPLATAVAIASLNVIRDEK----LAERSRAFEGIH 62 (67)
Q Consensus 10 ~~g~~~i~~~~~~------~~h~~Tf~Gnpla~AAala~l~~i~~~~----l~e~~~~~G~~L 62 (67)
.+++++|++.|.. +.|++||+|||++||||+++|+++++++ +.+++++++++|
T Consensus 666 ~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l 728 (817)
T PLN02974 666 TLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELW 728 (817)
T ss_pred EEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4579999999842 3699999999999999999999999985 445555555443
No 49
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.00 E-value=6.1e-10 Score=79.18 Aligned_cols=55 Identities=33% Similarity=0.330 Sum_probs=50.6
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.+..|++||+|||++|++++++|+++++++++++++++|++|.
T Consensus 277 av~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~ 331 (421)
T PRK06777 277 AVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLV 331 (421)
T ss_pred EEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4568999999998888999999999999999999999999999999999998863
No 50
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.96 E-value=1.1e-09 Score=77.65 Aligned_cols=55 Identities=33% Similarity=0.347 Sum_probs=50.4
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.+..|++||+|||++|++++++|++++++++.++++++|++|.
T Consensus 276 ~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~ 330 (420)
T TIGR00700 276 GVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVT 330 (420)
T ss_pred EEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4568999999998788999999999999999999999999999999999998753
No 51
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=98.96 E-value=1.2e-09 Score=77.64 Aligned_cols=55 Identities=31% Similarity=0.437 Sum_probs=50.0
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+....|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 286 av~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 340 (433)
T PRK08117 286 AVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYAL 340 (433)
T ss_pred eEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4458999999987778999999999999999999999999999999999998864
No 52
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.95 E-value=1.2e-09 Score=77.35 Aligned_cols=54 Identities=26% Similarity=0.334 Sum_probs=48.0
Q ss_pred ccccHHHHHHhcc------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.+ ..|++||+|||++|++++++|+++++++++++++++|++|+
T Consensus 281 v~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~ 340 (423)
T PRK05964 281 TLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLA 340 (423)
T ss_pred EEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5689999998742 25899999999999999999999999999999999999874
No 53
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=98.95 E-value=1.3e-09 Score=76.55 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=48.8
Q ss_pred cccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
++++++++.+....|++||+|||++|++++++|++++++++.+++++++++|.
T Consensus 260 ~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~ 312 (397)
T TIGR03246 260 LTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFV 312 (397)
T ss_pred EEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 35999999998778999999999999999999999999999999999999874
No 54
>PRK06541 hypothetical protein; Provisional
Probab=98.95 E-value=1.2e-09 Score=78.86 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=49.6
Q ss_pred hhhccccHHHHHHhcc----cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 7 YMYKNERTKLMVLLSI----LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 7 ~~~~~g~~~i~~~~~~----~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+-..++++++++.+.+ ..|++||+|||++||+++++|+++++++++++++++|++|.
T Consensus 299 igav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~ 359 (460)
T PRK06541 299 LGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFR 359 (460)
T ss_pred eeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445689999998753 35889999999999999999999999999999999999874
No 55
>PLN00144 acetylornithine transaminase
Probab=98.93 E-value=1.7e-09 Score=76.00 Aligned_cols=54 Identities=20% Similarity=0.127 Sum_probs=50.4
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L 62 (67)
+.++++++++.+.+..|++||+|||++|++++++|++|+++++.++++++|++|
T Consensus 246 ~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l 299 (382)
T PLN00144 246 AVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYL 299 (382)
T ss_pred EEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 456899999999888899999999999999999999999999999999999987
No 56
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=98.92 E-value=2.1e-09 Score=76.45 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=49.2
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+....|++||+|||++|++++++|++++++++.++++++|++|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~ 320 (408)
T PRK04612 267 MLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALR 320 (408)
T ss_pred EEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 347888999888778999999999999999999999999999999999998864
No 57
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=98.92 E-value=2.2e-09 Score=76.66 Aligned_cols=54 Identities=31% Similarity=0.337 Sum_probs=47.7
Q ss_pred ccccHHHHHHhccc-----CCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSIL-----LNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~-----~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.+. .|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~ 347 (427)
T TIGR00508 289 TVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLK 347 (427)
T ss_pred EEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35788999988642 4899999999999999999999999999999999999874
No 58
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=98.92 E-value=1.8e-09 Score=77.39 Aligned_cols=53 Identities=30% Similarity=0.370 Sum_probs=46.8
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+ +..|++||+|||++|++++++|+++++ +++++++++|++|+
T Consensus 300 av~~~~~i~~~~-~~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~ 352 (441)
T PRK05769 300 AVIGRAELMFLP-PGSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGEYLR 352 (441)
T ss_pred EEEEehhhhhcC-CCCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 356899998643 467999999999999999999999999 99999999999874
No 59
>PRK08297 L-lysine aminotransferase; Provisional
Probab=98.91 E-value=2.2e-09 Score=77.09 Aligned_cols=42 Identities=24% Similarity=0.185 Sum_probs=39.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 22 ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 22 ~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+..|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 318 ~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 359 (443)
T PRK08297 318 SSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLL 359 (443)
T ss_pred ccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 346999999999999999999999999999999999999874
No 60
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.90 E-value=1.4e-09 Score=78.95 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=39.7
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 21 SILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 21 ~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+..|++||+|||++||+++++|+++++++++++++++|++|.
T Consensus 340 ~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 382 (464)
T TIGR00699 340 KPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLY 382 (464)
T ss_pred CCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999998864
No 61
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=98.88 E-value=3e-09 Score=77.08 Aligned_cols=54 Identities=30% Similarity=0.362 Sum_probs=48.1
Q ss_pred ccccHHHHHHhcc---cCCCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI---LLNQSTFDGNPLATAVAIASLNVIRD-EKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~---~~h~~Tf~Gnpla~AAala~l~~i~~-~~l~e~~~~~G~~L~ 63 (67)
.+||+|||+.+.| ..+.+||+|||++++|++++|+.+.+ +.++++..++|++|.
T Consensus 279 ~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~ 336 (432)
T COG0001 279 FGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLA 336 (432)
T ss_pred eccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4699999998865 47999999999999999999999987 569999999998874
No 62
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=98.87 E-value=3e-09 Score=74.94 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=34.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 035320 22 ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAF 58 (67)
Q Consensus 22 ~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~ 58 (67)
++.|++||+|||++|||++++|++|+++++++|++++
T Consensus 249 ~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~ 285 (364)
T PRK04013 249 RGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK 285 (364)
T ss_pred CCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4579999999999999999999999999999999886
No 63
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=98.86 E-value=2.8e-09 Score=76.07 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=48.0
Q ss_pred hhccccHHHHHH--hc------ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVL--LS------ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~--~~------~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-..++++++++. +. ++.|++||+|||++||+++++|++|++++++++++++|++|+
T Consensus 260 ~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~ 323 (431)
T PRK06209 260 SALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLA 323 (431)
T ss_pred EEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345689999987 31 124899999999999999999999999999999999999874
No 64
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=98.86 E-value=3.7e-09 Score=75.66 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=50.5
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.+..|++||+|||++|++++++|++++++++.++++++|++|.
T Consensus 298 ~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~ 352 (451)
T PRK06918 298 GVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVM 352 (451)
T ss_pred EEEEcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4568999999998888999999999999999999999999999999999998763
No 65
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=98.82 E-value=6.6e-09 Score=74.62 Aligned_cols=55 Identities=27% Similarity=0.381 Sum_probs=50.5
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+....|.+||+|||++|++++++|+++++++++++++++|++|+
T Consensus 283 av~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 337 (443)
T PRK08360 283 ATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTK 337 (443)
T ss_pred EEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 4568999999998777999999999999999999999999999999999999874
No 66
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=98.82 E-value=5.2e-09 Score=74.26 Aligned_cols=53 Identities=23% Similarity=0.184 Sum_probs=46.4
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHH-HhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNV-IRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~-i~~~~l~e~~~~~G~~L~ 63 (67)
..+++++ +.+.+..|++||+|||++|++++++|++ ++++++.++++++|++|.
T Consensus 275 v~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~ 328 (412)
T TIGR02407 275 TLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQ 328 (412)
T ss_pred EEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3467887 7777778999999999999999999996 888999999999999874
No 67
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=98.79 E-value=8.5e-09 Score=72.58 Aligned_cols=56 Identities=23% Similarity=0.301 Sum_probs=49.3
Q ss_pred hhhccccHHHHHHhcc---cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 035320 7 YMYKNERTKLMVLLSI---LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62 (67)
Q Consensus 7 ~~~~~g~~~i~~~~~~---~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L 62 (67)
+-+.++++++++.+.+ ..|++||++||++|++++++|+++++++++++++++++++
T Consensus 271 ig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~ 329 (423)
T TIGR00713 271 VGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRL 329 (423)
T ss_pred eeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3456789999999863 4588999999999999999999999999999999999886
No 68
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=98.77 E-value=1.3e-08 Score=71.76 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=50.5
Q ss_pred hhccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-+.++++++++.+.+..|++||++||++|++++++|++++++++.+++++++++|.
T Consensus 261 g~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~ 316 (406)
T PRK12381 261 GAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFV 316 (406)
T ss_pred EEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34568899999998888999999999999999999999999999999999998763
No 69
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=98.77 E-value=1.3e-08 Score=71.19 Aligned_cols=55 Identities=36% Similarity=0.474 Sum_probs=50.0
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
|.++++++++.+.+..|++||++||++|++++++|++++++++.+++++++++|.
T Consensus 266 ~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~ 320 (396)
T PRK04073 266 CVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFK 320 (396)
T ss_pred EEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5568999999998778999999999999999999999998999999999988764
No 70
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=98.76 E-value=1.2e-08 Score=72.94 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=38.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 22 ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 22 ~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+..|++||+|||++||+++++|+++++++++++++++|++|.
T Consensus 311 ~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 352 (431)
T TIGR03251 311 PSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLL 352 (431)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999874
No 71
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=98.73 E-value=1.9e-08 Score=69.97 Aligned_cols=55 Identities=33% Similarity=0.284 Sum_probs=49.4
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.+..|.+||++||++|++++++|++++++++.+++++++++|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~ 316 (398)
T PRK03244 262 ACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLR 316 (398)
T ss_pred EEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4457889999988778999999999999999999999999999999999998763
No 72
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=98.69 E-value=2.7e-08 Score=70.76 Aligned_cols=54 Identities=26% Similarity=0.380 Sum_probs=48.1
Q ss_pred hccccHHHHHHhc---ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLS---ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~---~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L 62 (67)
+.++++++++.+. +..|++||+|||++|++++++|++++++++++++++++++|
T Consensus 275 a~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~ 331 (426)
T PRK00062 275 AFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRL 331 (426)
T ss_pred eeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3468999999885 34688999999999999999999999999999999999987
No 73
>PLN02624 ornithine-delta-aminotransferase
Probab=98.68 E-value=3.7e-08 Score=71.21 Aligned_cols=55 Identities=42% Similarity=0.479 Sum_probs=49.1
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.++.|++||+|||++|+++.++|++++++++.+++.+++++|+
T Consensus 304 av~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~ 358 (474)
T PLN02624 304 AVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELR 358 (474)
T ss_pred eeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 3457889999888888999999999999999999999999999999999988764
No 74
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=98.68 E-value=2.8e-08 Score=70.67 Aligned_cols=54 Identities=22% Similarity=0.189 Sum_probs=45.7
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHH-HHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASL-NVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l-~~i~~~~l~e~~~~~G~~L~ 63 (67)
+..+++++ +.+.+..|++||+|||++|++++++| ++++++++.++++++|++|.
T Consensus 278 av~~~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~ 332 (425)
T PRK09264 278 LVLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVR 332 (425)
T ss_pred EEEEchhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34567887 46666789999999999999999999 77788899999999999874
No 75
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=98.67 E-value=4.2e-08 Score=68.24 Aligned_cols=55 Identities=24% Similarity=0.151 Sum_probs=49.3
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+....|++||++||+++++++++|++++++++.++++++++++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~ 308 (389)
T PRK01278 254 ACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLK 308 (389)
T ss_pred EEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4568899999998888999999999999999999999998899999999888754
No 76
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=98.53 E-value=1.6e-07 Score=64.84 Aligned_cols=56 Identities=27% Similarity=0.230 Sum_probs=49.4
Q ss_pred hhccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-+.++++++++.+.+..+.+||++||+++++++++|+.++++++++++++++++|.
T Consensus 245 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~ 300 (377)
T PRK02936 245 GAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFL 300 (377)
T ss_pred EEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35568999999998778899999999999999999999988889999998888763
No 77
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=98.49 E-value=2.6e-07 Score=64.66 Aligned_cols=55 Identities=36% Similarity=0.466 Sum_probs=48.6
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+....+++||++||++|++++++|++++++++.+++++++++|.
T Consensus 266 ~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~ 320 (401)
T TIGR01885 266 AVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFR 320 (401)
T ss_pred EEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3558899999887767889999999999999999999998899999999988763
No 78
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=98.48 E-value=3e-07 Score=63.79 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=49.5
Q ss_pred hhccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-+..+++++++.+....+.+||++||++|+++.++|++++++++++++++.+++++
T Consensus 243 g~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~ 298 (375)
T PRK04260 243 GAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQ 298 (375)
T ss_pred EEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34568899999887777999999999999999999999998899999999988764
No 79
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=98.44 E-value=3.7e-07 Score=63.65 Aligned_cols=54 Identities=31% Similarity=0.404 Sum_probs=48.5
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.+..+++||++||++|++++++|+.++++++.+++++++++|.
T Consensus 268 v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~ 321 (401)
T PRK00854 268 VLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFL 321 (401)
T ss_pred EEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 457999999887778999999999999999999999998889999999988763
No 80
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=98.38 E-value=6.9e-07 Score=61.79 Aligned_cols=55 Identities=29% Similarity=0.329 Sum_probs=48.7
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
|.++++++++.+....+.+||++||+++++++++|+.++++++.++++++++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~ 315 (396)
T PRK02627 261 AVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLR 315 (396)
T ss_pred EEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4568899999888778999999999999999999999998899999998887653
No 81
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=98.36 E-value=8.5e-07 Score=61.63 Aligned_cols=54 Identities=33% Similarity=0.508 Sum_probs=48.3
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L 62 (67)
+.++++++++.+.+..+++||++||++++++.++|+.++++++.++++++++++
T Consensus 258 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l 311 (400)
T PTZ00125 258 AVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVF 311 (400)
T ss_pred EEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 556899999988777788999999999999999999999889999999888765
No 82
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=98.32 E-value=1.1e-06 Score=62.37 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=50.6
Q ss_pred hhccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-|.++++++++.+....+++||++||++++++.++|+.++++++++++++++++++
T Consensus 277 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (425)
T PRK08088 277 AGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLK 332 (425)
T ss_pred eeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34568999999998888999999999999999999999999999999999998764
No 83
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=98.31 E-value=1.3e-06 Score=61.39 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=48.6
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.+..|++||++||+++++++++|+.++++++.+++++++++|.
T Consensus 263 ~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~ 317 (403)
T PRK05093 263 AMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFV 317 (403)
T ss_pred EEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3457899999998778899999999999999999999998899999999888763
No 84
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=98.27 E-value=1.9e-06 Score=59.74 Aligned_cols=55 Identities=33% Similarity=0.387 Sum_probs=47.9
Q ss_pred hccccHHHHHHh--cccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLL--SILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~--~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+ ....+.+||++||++++++.++|++++++++.+++++++++|.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~ 326 (413)
T cd00610 270 AVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLR 326 (413)
T ss_pred EEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345899999986 4567889999999999999999999998999999999988763
No 85
>PLN02822 serine palmitoyltransferase
Probab=97.88 E-value=1.7e-05 Score=57.61 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=46.8
Q ss_pred ccccHHHHHHhcccCCCCCCCCC--HHHHHHHHHHHHHHhh-hhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGN--PLATAVAIASLNVIRD-EKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gn--pla~AAala~l~~i~~-~~l~e~~~~~G~~L~ 63 (67)
.+|++++++.+....++.||+++ |..++|++++|+.+++ +++.+++++++++|.
T Consensus 325 i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~ 381 (481)
T PLN02822 325 CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLH 381 (481)
T ss_pred EEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 34999999998777889999998 9999999999999876 788888888888764
No 86
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=97.83 E-value=4.6e-05 Score=52.35 Aligned_cols=54 Identities=31% Similarity=0.355 Sum_probs=46.5
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L 62 (67)
|..+++++++.+.+..+..+|++||++++++.++|+.++++++.++++++++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~ 302 (379)
T TIGR00707 249 ATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYF 302 (379)
T ss_pred EEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456889999999877788999999999999999999998778888888877665
No 87
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=97.80 E-value=3.9e-05 Score=54.19 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=44.0
Q ss_pred ccccHHHHHHhcccCCCCCCCCC--HHHHHHHHHHHHH-HhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGN--PLATAVAIASLNV-IRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gn--pla~AAala~l~~-i~~~~l~e~~~~~G~~L~ 63 (67)
.+|++++++.+....++.||+++ |..|++++++++. ++++++.+++++++++|+
T Consensus 219 v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~ 275 (392)
T PLN03227 219 TVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLY 275 (392)
T ss_pred EecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45899998888767788999998 9888888877755 567889999999888764
No 88
>PRK07505 hypothetical protein; Provisional
Probab=96.62 E-value=0.0028 Score=44.45 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=34.9
Q ss_pred cccHHHHHHhcccCCCCCCCCC--HHHHHHHHHHHHHHhhhhHHHH
Q 035320 11 NERTKLMVLLSILLNQSTFDGN--PLATAVAIASLNVIRDEKLAER 54 (67)
Q Consensus 11 ~g~~~i~~~~~~~~h~~Tf~Gn--pla~AAala~l~~i~~~~l~e~ 54 (67)
++++++.+.+....+..||+|| |++|++++++++++.++++.+.
T Consensus 262 ~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~ 307 (402)
T PRK07505 262 LGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQL 307 (402)
T ss_pred eCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHH
Confidence 3578888888777788999887 4899999999998876655443
No 89
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=96.44 E-value=0.0068 Score=42.38 Aligned_cols=54 Identities=19% Similarity=0.073 Sum_probs=37.8
Q ss_pred hccccHHHHHHhccc--CCCCCCCCCHHHHHHHHHHHHHHhhhh-HHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSIL--LNQSTFDGNPLATAVAIASLNVIRDEK-LAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~--~h~~Tf~Gnpla~AAala~l~~i~~~~-l~e~~~~~G~~L 62 (67)
|..+++++++.+... ....|.++||.++++++++|+.+++.+ +.++.++.+++|
T Consensus 255 ~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l 311 (402)
T TIGR01821 255 YIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRL 311 (402)
T ss_pred eeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 445899998887532 233577899999999999999987553 444444555543
No 90
>PRK09064 5-aminolevulinate synthase; Validated
Probab=96.35 E-value=0.0085 Score=41.92 Aligned_cols=54 Identities=19% Similarity=0.110 Sum_probs=39.3
Q ss_pred hccccHHHHHHhccc--CCCCCCCCCHHHHHHHHHHHHHHhhhh-HHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSIL--LNQSTFDGNPLATAVAIASLNVIRDEK-LAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~--~h~~Tf~Gnpla~AAala~l~~i~~~~-l~e~~~~~G~~L 62 (67)
|.++++++++.+... .+..|.+++|.++++++++++.+++.+ ..+++.+.+++|
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l 312 (407)
T PRK09064 256 YIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKL 312 (407)
T ss_pred eEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445899988876432 234577899999999999999998654 346666666654
No 91
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=96.18 E-value=0.0046 Score=45.19 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=39.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 22 ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 22 ~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
|..+.+||-|+|--.-..-+++++|++++|++|+...|++|.
T Consensus 360 pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~ 401 (484)
T KOG1405|consen 360 PYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALL 401 (484)
T ss_pred hHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999874
No 92
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=96.16 E-value=0.013 Score=41.24 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=36.0
Q ss_pred hccccHHHHHHhcccCC--CCCCCCCHHHHHHHHHHHHHHhhhh-HHHHHHHhhcc
Q 035320 9 YKNERTKLMVLLSILLN--QSTFDGNPLATAVAIASLNVIRDEK-LAERSRAFEGI 61 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h--~~Tf~Gnpla~AAala~l~~i~~~~-l~e~~~~~G~~ 61 (67)
|..+++++.+.+....+ ..|++++|.+++++.++|+.+++.. ..++.++.+++
T Consensus 255 ~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~ 310 (406)
T PRK13393 255 YITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVAR 310 (406)
T ss_pred eeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 34578898888765433 3578899999999999999886543 12333344444
No 93
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=95.77 E-value=0.022 Score=38.87 Aligned_cols=53 Identities=25% Similarity=0.081 Sum_probs=39.5
Q ss_pred ccccHHHHHHhcc--cCCCCCCCCCHHHHHHHHHHHHHHhhh-hHHHHHHHhhccc
Q 035320 10 KNERTKLMVLLSI--LLNQSTFDGNPLATAVAIASLNVIRDE-KLAERSRAFEGIH 62 (67)
Q Consensus 10 ~~g~~~i~~~~~~--~~h~~Tf~Gnpla~AAala~l~~i~~~-~l~e~~~~~G~~L 62 (67)
..+++++++.+.. ..+..+.+++|++++++.++|+.+++. ++.++..++++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l 303 (385)
T PRK05958 248 VLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARL 303 (385)
T ss_pred EEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4577888877642 235566789999999999999988764 6777777777654
No 94
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=94.05 E-value=0.13 Score=35.47 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=37.0
Q ss_pred hccccHHHHHHhcccC--CCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSILL--NQSTFDGNPLATAVAIASLNVIRD-EKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~--h~~Tf~Gnpla~AAala~l~~i~~-~~l~e~~~~~G~~L 62 (67)
|..+++++++.+.... +..+..++|..++++.++++.+++ +++.++..++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l 297 (385)
T TIGR01825 241 YAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFF 297 (385)
T ss_pred EEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4558899988875432 122234688999999999988753 56777777776654
No 95
>PLN02483 serine palmitoyltransferase
Probab=93.69 E-value=0.15 Score=37.32 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=30.3
Q ss_pred hccccHHHHHHhcccCCCCCCC--CCHHHHHHHHHHHHHHh
Q 035320 9 YKNERTKLMVLLSILLNQSTFD--GNPLATAVAIASLNVIR 47 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~--Gnpla~AAala~l~~i~ 47 (67)
|..+++++.+.+....++.+|+ .+|..+++++++|+++.
T Consensus 319 ~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~ 359 (489)
T PLN02483 319 YIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVIL 359 (489)
T ss_pred EEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHH
Confidence 4558999999887665656665 48899999999998876
No 96
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=92.61 E-value=0.3 Score=33.74 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=34.3
Q ss_pred ccccHHHHHHhcccCCCCCCCC--CHHHHHHHHHHHHHHhh-hhHHHHHHHhhccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDG--NPLATAVAIASLNVIRD-EKLAERSRAFEGIH 62 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~G--npla~AAala~l~~i~~-~~l~e~~~~~G~~L 62 (67)
..+++++.+.+.+......|++ +|..+++++++++.+++ +++.++.+++.+++
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l 305 (393)
T TIGR01822 250 TTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYF 305 (393)
T ss_pred EEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4588888887754322333433 67777888899888754 45666666666554
No 97
>PRK07179 hypothetical protein; Provisional
Probab=92.57 E-value=0.32 Score=34.16 Aligned_cols=51 Identities=22% Similarity=0.091 Sum_probs=34.2
Q ss_pred ccccHHHHHHhc----ccCCCCCCCCCHHHHHHHHHHHHHHhhh-hHHHHHHHhhccc
Q 035320 10 KNERTKLMVLLS----ILLNQSTFDGNPLATAVAIASLNVIRDE-KLAERSRAFEGIH 62 (67)
Q Consensus 10 ~~g~~~i~~~~~----~~~h~~Tf~Gnpla~AAala~l~~i~~~-~l~e~~~~~G~~L 62 (67)
..+++++++.+. +..+++|+. |..++++.++++.+++. ++.++++++.++|
T Consensus 260 l~~~~~~~~~~~~~~~~~~~~~t~~--~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l 315 (407)
T PRK07179 260 ITCPRELAEYVPFVSYPAIFSSTLL--PHEIAGLEATLEVIESADDRRARLHANARFL 315 (407)
T ss_pred EEeCHHHHHHHHHhCcCeeeCCCCC--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 447888877764 344666665 55556677888888654 4677777776665
No 98
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=92.43 E-value=0.24 Score=34.65 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=34.5
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFE 59 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G 59 (67)
|.+|++++.+.+........|+.+|.+.++++++|+.+..+.+.+..+++.
T Consensus 213 ~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~ 263 (346)
T TIGR03576 213 LLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKE 263 (346)
T ss_pred EEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 455899998888655444455578999999999998765444444444433
No 99
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=91.77 E-value=0.45 Score=32.05 Aligned_cols=54 Identities=20% Similarity=0.102 Sum_probs=36.2
Q ss_pred hccccHHHHHHhccc--CCCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSIL--LNQSTFDGNPLATAVAIASLNVIRD-EKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~--~h~~Tf~Gnpla~AAala~l~~i~~-~~l~e~~~~~G~~L 62 (67)
|..+++++.+.+... .+..+.+.+|.+++++.++++.+++ +++.++.++..++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l 281 (360)
T TIGR00858 225 YVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARL 281 (360)
T ss_pred EEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 445788888877432 2334456789999999999987764 35666666665543
No 100
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=90.81 E-value=0.47 Score=32.79 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=29.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhh---HHHHHHHhhcccc
Q 035320 26 QSTFDGNPLATAVAIASLNVIRDEK---LAERSRAFEGIHY 63 (67)
Q Consensus 26 ~~Tf~Gnpla~AAala~l~~i~~~~---l~e~~~~~G~~L~ 63 (67)
.+||+++++.++++.++++.+.+++ +.++..+++++|.
T Consensus 281 ~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~ 321 (398)
T cd00613 281 SNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLA 321 (398)
T ss_pred ccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999998886544 4567777776653
No 101
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=90.49 E-value=0.69 Score=31.74 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=32.9
Q ss_pred hccccHHHHHHhcccCCCC--CCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHhhcc
Q 035320 9 YKNERTKLMVLLSILLNQS--TFDGNPLATAVAIASLNVIRD-EKLAERSRAFEGI 61 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~--Tf~Gnpla~AAala~l~~i~~-~~l~e~~~~~G~~ 61 (67)
|..+++++++.+....... +-..+|..++++.++++.+++ +++.++.+++.++
T Consensus 253 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 308 (397)
T PRK06939 253 YTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARY 308 (397)
T ss_pred EEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4458888888875422222 223467778888888888754 3555555555544
No 102
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=89.80 E-value=0.86 Score=32.00 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=33.6
Q ss_pred hccccHHHHHHhcccC--CCCCCCCCHHHHHHHHHHHHHHhhhh-HHHHHHHhhcc
Q 035320 9 YKNERTKLMVLLSILL--NQSTFDGNPLATAVAIASLNVIRDEK-LAERSRAFEGI 61 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~--h~~Tf~Gnpla~AAala~l~~i~~~~-l~e~~~~~G~~ 61 (67)
|..+++++++.+.... ...|.+.+|++++++.++|+.+++.+ ..++.++..++
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~ 311 (410)
T PRK13392 256 YIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAA 311 (410)
T ss_pred hhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4458889888654321 23466788999999999999886433 22334444433
No 103
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=89.48 E-value=0.92 Score=30.50 Aligned_cols=54 Identities=20% Similarity=0.135 Sum_probs=37.2
Q ss_pred hccccHHHHHHhccc--CCCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSIL--LNQSTFDGNPLATAVAIASLNVIRD-EKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~--~h~~Tf~Gnpla~AAala~l~~i~~-~~l~e~~~~~G~~L 62 (67)
|.++++++++.+.+. ....+...+|..++++.+.++.+.+ ++..++..++.+++
T Consensus 210 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 266 (349)
T cd06454 210 YIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYL 266 (349)
T ss_pred EEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455788888776432 2233446889999999999998876 55666666665554
No 104
>PLN02955 8-amino-7-oxononanoate synthase
Probab=88.34 E-value=0.97 Score=33.65 Aligned_cols=50 Identities=20% Similarity=-0.055 Sum_probs=31.0
Q ss_pred ccccHHHHHHhc---ccCCCCCCCCCHHHHHHHHHHHHHHhhh-hHHHHHHHhhc
Q 035320 10 KNERTKLMVLLS---ILLNQSTFDGNPLATAVAIASLNVIRDE-KLAERSRAFEG 60 (67)
Q Consensus 10 ~~g~~~i~~~~~---~~~h~~Tf~Gnpla~AAala~l~~i~~~-~l~e~~~~~G~ 60 (67)
.+|++++++.+. .....+| +-.|..++++++++++++++ ...+++++.-+
T Consensus 328 i~gs~~~~~~l~~~~~~~ifSt-alpp~~aaa~laal~l~~~~~~~r~~L~~n~~ 381 (476)
T PLN02955 328 IACSKKWKQLIQSRGRSFIFST-AIPVPMAAAAYAAVVVARKEKWRRKAIWERVK 381 (476)
T ss_pred eecHHHHHHHHHHhCCCCeecc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 448998888875 3456666 44556667788999988533 33334444333
No 105
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=84.28 E-value=2.9 Score=28.81 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.9
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVI 46 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i 46 (67)
|..+++++++.+.... .+|..++++++++.++|+..
T Consensus 239 ~~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~ 274 (368)
T PRK03317 239 YLAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHA 274 (368)
T ss_pred hhhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCH
Confidence 4458899988886433 57889999999999988643
No 106
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=79.79 E-value=1.7 Score=29.20 Aligned_cols=36 Identities=8% Similarity=0.018 Sum_probs=25.8
Q ss_pred ccccHHHHHHhccc--CCCCCCCCCHHHHHHHHHHHHH
Q 035320 10 KNERTKLMVLLSIL--LNQSTFDGNPLATAVAIASLNV 45 (67)
Q Consensus 10 ~~g~~~i~~~~~~~--~h~~Tf~Gnpla~AAala~l~~ 45 (67)
..+++++.+.+.+. .++++++.+++.++++.+.|+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~ 243 (338)
T cd06502 206 VVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALEN 243 (338)
T ss_pred EECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcC
Confidence 44788888877543 3456777788888888888754
No 107
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=78.34 E-value=3.1 Score=27.50 Aligned_cols=51 Identities=29% Similarity=0.209 Sum_probs=35.1
Q ss_pred cccH-HHHHHhcccCCCCCCCCCHHHHHHHHHHHHHH--hhhhHHHHHHHhhcc
Q 035320 11 NERT-KLMVLLSILLNQSTFDGNPLATAVAIASLNVI--RDEKLAERSRAFEGI 61 (67)
Q Consensus 11 ~g~~-~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i--~~~~l~e~~~~~G~~ 61 (67)
.+++ ++.+.+.......|++.++.+..++.+.++.. .-+++.++..+..++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 270 (350)
T cd00609 217 IAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDA 270 (350)
T ss_pred ecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 4677 78888876666668899999999998888876 233444444444443
No 108
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=75.95 E-value=8.4 Score=28.20 Aligned_cols=36 Identities=22% Similarity=0.104 Sum_probs=23.3
Q ss_pred ccc-HHHHHHhccc---CCC-CCCCCCHHHHHHHHHH-HHHH
Q 035320 11 NER-TKLMVLLSIL---LNQ-STFDGNPLATAVAIAS-LNVI 46 (67)
Q Consensus 11 ~g~-~~i~~~~~~~---~h~-~Tf~Gnpla~AAala~-l~~i 46 (67)
+++ +++++.+... .|+ .||+|++..+.+|+++ ++..
T Consensus 271 ~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~ 312 (460)
T PRK13238 271 CFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEG 312 (460)
T ss_pred EcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHh
Confidence 355 5777776543 344 5999998887777774 4433
No 109
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=75.57 E-value=5.8 Score=27.54 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=26.0
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|.++++++++.+.... .+|+.|+++.+++.+.|+
T Consensus 234 ~~v~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~ 267 (369)
T PRK08153 234 YAIGAPGTIKAFDKVR--NHFGMNRIAQAAALAALK 267 (369)
T ss_pred eeecCHHHHHHHHHhh--cCCCCCHHHHHHHHHHhc
Confidence 5568889888775432 457899999999988884
No 110
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=75.43 E-value=9.2 Score=27.81 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=39.1
Q ss_pred hccccHHHHHHhcc---cCCCCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSI---LLNQSTFDGNPLATAVAIASLNVIR-DEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~---~~h~~Tf~Gnpla~AAala~l~~i~-~~~l~e~~~~~G~~L~ 63 (67)
|..|++++.|.+-. ....+| +=.|..+|++.++|+.++ .++..++.++...+++
T Consensus 250 ~v~g~~~~~d~L~~~ar~~ifSt-alpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~ 307 (388)
T COG0156 250 YIAGSAALIDYLRNRARPFIFST-ALPPAVAAAALAALRILEEGPERRERLQELAAFFR 307 (388)
T ss_pred eeeCcHHHHHHHHHhCCceeccC-CCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 44599999888743 234344 456999999999999997 4567777777776665
No 111
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=74.96 E-value=11 Score=26.26 Aligned_cols=51 Identities=6% Similarity=-0.074 Sum_probs=32.4
Q ss_pred ccHHHHHHhc--ccCCCCCCCCCHHHHHHHHHHHHHHhhh--hHHHHHHHhhccc
Q 035320 12 ERTKLMVLLS--ILLNQSTFDGNPLATAVAIASLNVIRDE--KLAERSRAFEGIH 62 (67)
Q Consensus 12 g~~~i~~~~~--~~~h~~Tf~Gnpla~AAala~l~~i~~~--~l~e~~~~~G~~L 62 (67)
+.+++.+.+. ...+..+.+.+|.++++..++++.++++ ...++++++.++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l 277 (370)
T PRK05937 223 SSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYF 277 (370)
T ss_pred cCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 4555544432 2234455668999999999999998643 3456666666554
No 112
>PRK06108 aspartate aminotransferase; Provisional
Probab=71.28 E-value=5.2 Score=27.45 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=26.8
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNV 45 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~ 45 (67)
|..+++++.+.+......++++.++++.+++.+.|+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~ 279 (382)
T PRK06108 243 WLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDE 279 (382)
T ss_pred eeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhC
Confidence 4557888888776544445677889988888888753
No 113
>PRK07324 transaminase; Validated
Probab=67.86 E-value=8.6 Score=26.78 Aligned_cols=36 Identities=8% Similarity=0.125 Sum_probs=27.8
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|.++++++.+.+....+.++++.++++..++..+|+
T Consensus 233 ~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~ 268 (373)
T PRK07324 233 WIAANEEVIDILRKYRDYTMICAGVFDDMLASLALE 268 (373)
T ss_pred EEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHc
Confidence 445788888888776666788888998888877774
No 114
>PRK03321 putative aminotransferase; Provisional
Probab=64.81 E-value=18 Score=24.66 Aligned_cols=34 Identities=35% Similarity=0.431 Sum_probs=26.0
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+++++++.+... ..+++.++++.+++.+.|+
T Consensus 227 ~~v~~~~~~~~~~~~--~~~~~~s~~~q~~a~~~l~ 260 (352)
T PRK03321 227 YAVGHPEVIAALRKV--AVPFSVNSLAQAAAIASLA 260 (352)
T ss_pred hhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhc
Confidence 455888988887643 3577889999988888875
No 115
>PRK06225 aspartate aminotransferase; Provisional
Probab=63.77 E-value=13 Score=25.73 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=26.2
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNV 45 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~ 45 (67)
|..+++++.+.+.+. ..++++.|+++++++.+.++.
T Consensus 236 ~i~~~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~l~~ 271 (380)
T PRK06225 236 AVVATPDLIEVVKSI-VINDLGTNVIAQEAAIAGLKV 271 (380)
T ss_pred EEecCHHHHHHHHHH-HhcccCCCHHHHHHHHHHHhc
Confidence 445788888877543 235788899999888887753
No 116
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=63.50 E-value=17 Score=24.86 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=25.5
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+++++.+.+.... .+++.|+++.+++.+.|+
T Consensus 233 ~~v~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~ 266 (359)
T PRK03158 233 YGIASEELIEKLNIAR--PPFNTTRIAQYAAIAALE 266 (359)
T ss_pred hhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhc
Confidence 4457888888775432 358899999999988874
No 117
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=58.46 E-value=8.5 Score=28.47 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=20.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhh
Q 035320 27 STFDGNPLATAVAIASLNVIRDEK 50 (67)
Q Consensus 27 ~Tf~Gnpla~AAala~l~~i~~~~ 50 (67)
=+|++||-++.+++.++..+...+
T Consensus 333 D~YNAnp~sm~aai~~l~~~~~~~ 356 (451)
T COG0770 333 DSYNANPDSMRAALDLLAALPGRK 356 (451)
T ss_pred cCCCCCHHHHHHHHHHHhhCccCC
Confidence 489999999999999998886544
No 118
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=53.27 E-value=29 Score=23.67 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=25.1
Q ss_pred hhccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 8 MYKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
-|..+++++.+.+.... .+|+.++++.+++.+.|+
T Consensus 235 G~l~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~ 269 (367)
T PRK02731 235 GYGIAPPEIIDALNRVR--QPFNVNSLALAAAVAALD 269 (367)
T ss_pred eeeeCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHhC
Confidence 35568888888776432 357778888888877764
No 119
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=52.66 E-value=16 Score=24.80 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhh---HHHHHHHhhccc
Q 035320 27 STFDGNPLATAVAIASLNVIRDEK---LAERSRAFEGIH 62 (67)
Q Consensus 27 ~Tf~Gnpla~AAala~l~~i~~~~---l~e~~~~~G~~L 62 (67)
+|.++. .++++.++|+.+.+++ +.++..++.++|
T Consensus 259 gt~~~~--~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l 295 (371)
T PRK13520 259 GTRSGA--GVAATYAVMKYLGREGYRKVVERCMENTRWL 295 (371)
T ss_pred eeccCh--HHHHHHHHHhhhcHhHHHHHHHHHHHHHHHH
Confidence 344444 4777888888776554 556666666554
No 120
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=51.62 E-value=9.3 Score=26.67 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=32.1
Q ss_pred cccH-HHHHHhcccCCCCCCCCCHHHHHHHHHHHHHH--hhhhHHHHHHHhhccc
Q 035320 11 NERT-KLMVLLSILLNQSTFDGNPLATAVAIASLNVI--RDEKLAERSRAFEGIH 62 (67)
Q Consensus 11 ~g~~-~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i--~~~~l~e~~~~~G~~L 62 (67)
++++ ++.+.+...........+|..+++++..|+.+ +-++..+|+..+.++|
T Consensus 200 ~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r~~~~~~na~~la~~L 254 (369)
T cd00614 200 VGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRMERHSENALKVAEFL 254 (369)
T ss_pred EeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3655 77776643222233456799998887777654 3455667777666655
No 121
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=49.75 E-value=44 Score=22.86 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=25.1
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+++++.+.+... ..+++.|+++..++++.++
T Consensus 233 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~ 266 (357)
T PRK14809 233 YAVVPEEWADAYARV--NTPFAASELACRAGLAALD 266 (357)
T ss_pred eeecCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhC
Confidence 556888888877543 3478889998888887763
No 122
>PRK06348 aspartate aminotransferase; Provisional
Probab=48.02 E-value=34 Score=23.78 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=26.4
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+.+++.+.+.......+++.++++-.++.+.|+
T Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 280 (384)
T PRK06348 245 YVIAPDYIIETAKIINEGICFSAPTISQRAAIYALK 280 (384)
T ss_pred eeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Confidence 455788888877655555678888988888877774
No 123
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=45.43 E-value=49 Score=22.34 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=24.8
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNV 45 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~ 45 (67)
|..+++++.+.+.+. ..+|+.++.+.+++.+.++.
T Consensus 221 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~ 255 (346)
T TIGR01141 221 YAIANAEIIDALNKV--RAPFNLSRLAQAAAIAALRD 255 (346)
T ss_pred eeecCHHHHHHHHhc--cCCCCCCHHHHHHHHHHhCC
Confidence 445788888777543 24577789999888777654
No 124
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=44.76 E-value=59 Score=22.12 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=23.2
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+++++++.+.+.. .++..|+++.+++.+.++
T Consensus 205 ~i~~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~ 238 (330)
T TIGR01140 205 FVVAHPALLARLREAL--GPWTVNGPARAAGRAALA 238 (330)
T ss_pred heeCCHHHHHHHHhcC--CCCCchHHHHHHHHHHHh
Confidence 3447888888876543 356678888777776664
No 125
>PRK07682 hypothetical protein; Validated
Probab=43.80 E-value=36 Score=23.44 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=25.1
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+++++.+.+......++++.++++.+++.+.|+
T Consensus 237 ~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~ 272 (378)
T PRK07682 237 FIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALR 272 (378)
T ss_pred hhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHh
Confidence 445888888887544334556778888888877774
No 126
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=43.09 E-value=29 Score=25.56 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=35.3
Q ss_pred hhhhhhhccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhh
Q 035320 3 TSTFYMYKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEK 50 (67)
Q Consensus 3 ~~~~~~~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~ 50 (67)
.||+++ ||+++.+.++.-...--.--.+...|+-.++|+.++..+
T Consensus 229 qaGii~---GkKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 229 QAGIIV---GKKELIEKLQSHPLKRALRVDKETLAALEAALELYLQPE 273 (395)
T ss_pred ccceEe---chHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHHHcCch
Confidence 478888 999999888654445556667888999999999987654
No 127
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=41.97 E-value=83 Score=21.96 Aligned_cols=32 Identities=16% Similarity=0.069 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHhh---hhHHHHHHHhhccc
Q 035320 31 GNPLATAVAIASLNVIRD---EKLAERSRAFEGIH 62 (67)
Q Consensus 31 Gnpla~AAala~l~~i~~---~~l~e~~~~~G~~L 62 (67)
-|..+.++..++++.+.+ +++.++.+++.+++
T Consensus 279 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l 313 (406)
T PRK09295 279 PNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYA 313 (406)
T ss_pred ccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 566777788888887765 34455555554443
No 128
>PRK06460 hypothetical protein; Provisional
Probab=41.95 E-value=41 Score=23.73 Aligned_cols=54 Identities=7% Similarity=0.143 Sum_probs=29.6
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHh--hhhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIR--DEKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~--~~~l~e~~~~~G~~L 62 (67)
|.++++++.+.+.......+...+|..+..++..++.++ .+.+.++...+.++|
T Consensus 203 ~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~~~l~~r~~~~~~n~~~l~~~L 258 (376)
T PRK06460 203 LAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKIRMDVINRNAEQIAEFL 258 (376)
T ss_pred EEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHH
Confidence 456888888777533222233356766666555555443 344555555555543
No 129
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=40.46 E-value=52 Score=17.86 Aligned_cols=46 Identities=13% Similarity=0.069 Sum_probs=32.4
Q ss_pred HHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 035320 14 TKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62 (67)
Q Consensus 14 ~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L 62 (67)
..+.+.+.++.+.-+|. +|-.+...+.- ++++++..++..+.|...
T Consensus 31 ~~~~~~~~~~~~~~~~~-~~~el~~~i~~--ll~~~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 31 PGLREIFEDGEHIITYN-DPEELAEKIEY--LLENPEERRRIAKNARER 76 (92)
T ss_pred HHHHHHcCCCCeEEEEC-CHHHHHHHHHH--HHCCHHHHHHHHHHHHHH
Confidence 45555566677788887 88877777663 467888888877777554
No 130
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=40.02 E-value=41 Score=18.58 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 035320 29 FDGNPLATAVAIASLNVI 46 (67)
Q Consensus 29 f~Gnpla~AAala~l~~i 46 (67)
|+.||-++.+++.+++.+
T Consensus 20 ~ahNp~s~~a~l~~l~~~ 37 (91)
T PF02875_consen 20 YAHNPDSIRALLEALKEL 37 (91)
T ss_dssp T--SHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 788999999999999877
No 131
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=39.76 E-value=1.1e+02 Score=20.33 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhh
Q 035320 28 TFDGNPLATAVAIASLNVIRDEK 50 (67)
Q Consensus 28 Tf~Gnpla~AAala~l~~i~~~~ 50 (67)
.|.-++.+..+..++++.+.++.
T Consensus 233 ~~t~~~~~~~a~~~al~~~~~~g 255 (355)
T TIGR03301 233 RFTPPTHTVYAFAQALEELEAEG 255 (355)
T ss_pred CCCCcHHHHHHHHHHHHHHHHcc
Confidence 35567777788888888775543
No 132
>COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]
Probab=38.77 E-value=26 Score=20.98 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=25.3
Q ss_pred cccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 035320 11 NERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDE 49 (67)
Q Consensus 11 ~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~ 49 (67)
+.++||.+.+ .|.--|.|.|..+.+-.+..+++.+.
T Consensus 85 aT~eEI~e~i---~~~a~~~g~p~~~~a~~~~~~~~~~~ 120 (124)
T COG0599 85 ATKEEIAEAI---AVAAIYAGGPAAANAFRAALEVFEEL 120 (124)
T ss_pred CCHHHHHHHH---HHHHHHcCcHHHHHHHHHHHHHHHHh
Confidence 3456666655 45566889999988888777777643
No 133
>PRK05764 aspartate aminotransferase; Provisional
Probab=38.44 E-value=55 Score=22.57 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=24.7
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+++++.+.+....-..+.+-++++..++.+.|+
T Consensus 249 ~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 284 (393)
T PRK05764 249 YAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALN 284 (393)
T ss_pred EEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHc
Confidence 445788888877543333455678888888887775
No 134
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=36.38 E-value=63 Score=21.67 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=15.1
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 035320 27 STFDGNPLATAVAIASLNVI 46 (67)
Q Consensus 27 ~Tf~Gnpla~AAala~l~~i 46 (67)
.++..+++.++.++..++.+
T Consensus 211 ~~~~~~~~~aa~~~~~l~~~ 230 (352)
T cd00616 211 YNYRLSEIQAAIGLAQLEKL 230 (352)
T ss_pred eccCcCHHHHHHHHHHHHhh
Confidence 35667899999998877655
No 135
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=36.19 E-value=1.1e+02 Score=21.20 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHHhh---hhHHHHHHHhhccc
Q 035320 32 NPLATAVAIASLNVIRD---EKLAERSRAFEGIH 62 (67)
Q Consensus 32 npla~AAala~l~~i~~---~~l~e~~~~~G~~L 62 (67)
|..+.++..++++.+.+ +++.++..++.++|
T Consensus 274 ~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l 307 (403)
T TIGR01979 274 NIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYA 307 (403)
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 44556666677776654 34556655555443
No 136
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=35.97 E-value=42 Score=18.72 Aligned_cols=29 Identities=38% Similarity=0.445 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHh-hhhHHHHHHHhhcc
Q 035320 33 PLATAVAIASLNVIR-DEKLAERSRAFEGI 61 (67)
Q Consensus 33 pla~AAala~l~~i~-~~~l~e~~~~~G~~ 61 (67)
|-+..-++.+|+.|- +++|.+.+++...+
T Consensus 24 P~Ai~calk~Ln~iAad~~Lp~~vRE~AAf 53 (66)
T PF06786_consen 24 PDAIGCALKTLNDIAADEALPEDVREQAAF 53 (66)
T ss_pred cHHHHHHHHHHHHHHcccccCHHHHHHHHH
Confidence 555555688898884 78888888887654
No 137
>PRK08912 hypothetical protein; Provisional
Probab=35.52 E-value=68 Score=22.18 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=21.9
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASL 43 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l 43 (67)
|..+++++.+.+.......+|+.+|...+++.+.+
T Consensus 243 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l 277 (387)
T PRK08912 243 FVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGL 277 (387)
T ss_pred EEecCHHHHHHHHHHHhhccccCChHHHHHHHHHH
Confidence 44578888887754433445777776666665555
No 138
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=34.84 E-value=1.1e+02 Score=21.05 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=9.3
Q ss_pred hccccHHHHHHhcc
Q 035320 9 YKNERTKLMVLLSI 22 (67)
Q Consensus 9 ~~~g~~~i~~~~~~ 22 (67)
|..+++++.+.+.+
T Consensus 226 ~l~~~~~~~~~l~~ 239 (397)
T TIGR01976 226 ILWGRPELLMNLPP 239 (397)
T ss_pred EEEEcHHHHhhCCC
Confidence 34478888776654
No 139
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=34.04 E-value=42 Score=23.61 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=30.2
Q ss_pred cccHHHHHHhccc--CCCCCCCCCHHHHHHHHHHHHHHh--hhhHHHHHHHhhccc
Q 035320 11 NERTKLMVLLSIL--LNQSTFDGNPLATAVAIASLNVIR--DEKLAERSRAFEGIH 62 (67)
Q Consensus 11 ~g~~~i~~~~~~~--~h~~Tf~Gnpla~AAala~l~~i~--~~~l~e~~~~~G~~L 62 (67)
++++++.+.+... .++.+ -+|..++.++..++.+. -++..+++.++.++|
T Consensus 214 v~~~~~~~~l~~~~~~~g~~--~~p~~a~~~l~~l~tl~~r~~~~~~~a~~la~~L 267 (380)
T TIGR01325 214 AGSEELMAEVAVYLRHTGPA--MSPFNAWVLLKGLETLSLRMQKQFDSALAIAEWL 267 (380)
T ss_pred EeCHHHHHHHHHHHHhhCCC--CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence 4777777766432 23333 35666777776666653 455666777776655
No 140
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=33.72 E-value=85 Score=23.72 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=23.7
Q ss_pred ccHHHHHHhcccCCCCCCCC-CHHHHHHHHHHHHHHhh-------hhHHHHHHHhhccc
Q 035320 12 ERTKLMVLLSILLNQSTFDG-NPLATAVAIASLNVIRD-------EKLAERSRAFEGIH 62 (67)
Q Consensus 12 g~~~i~~~~~~~~h~~Tf~G-npla~AAala~l~~i~~-------~~l~e~~~~~G~~L 62 (67)
+++++.+.+.... ...|+| +|-..|++..++..+.+ +++++|++.+.+.|
T Consensus 298 ~~~~l~~~L~~a~-P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L 355 (493)
T PRK13580 298 AKKEYADAVDKGC-PLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGF 355 (493)
T ss_pred ecHHHHHHHhhCC-CcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 7888877773221 223332 22233333334555532 34555665555543
No 141
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=32.65 E-value=1.1e+02 Score=20.79 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=22.5
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+++++.+.+.. ....++.++++.+++.+.++
T Consensus 234 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~l~ 267 (361)
T PRK00950 234 YGFVPEWLIDYYMR--AKTPFSLTRLSQAAAIAALS 267 (361)
T ss_pred hhcCCHHHHHHHHH--hcCCCCCCHHHHHHHHHHhc
Confidence 44578888776643 23445677888877777764
No 142
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=31.62 E-value=62 Score=23.11 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=33.5
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHh--hhhHHHHHHHhhccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIR--DEKLAERSRAFEGIH 62 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~--~~~l~e~~~~~G~~L 62 (67)
.++++++.+.+..........-+|..++.+++.++.+. -+...+++..+.++|
T Consensus 223 vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L 277 (398)
T PRK08249 223 VCGSKELMEQVYHYREINGATMDPMSAYLILRGMKTLKLRVRQQQESAMALAKYL 277 (398)
T ss_pred EECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH
Confidence 44788887766443333445678888888888777664 244556666655544
No 143
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=31.21 E-value=1.2e+02 Score=21.04 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=24.8
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+.+++.+.+.... .+|+-|+++.+++.+.|+
T Consensus 233 ~~i~~~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~ 266 (366)
T PRK01533 233 YAVGHEELIEKLNVVR--LPFNVSSLAQKAATIAFG 266 (366)
T ss_pred HHhCCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhC
Confidence 4458888888775432 457888998888888873
No 144
>PF13982 YbfN: YbfN-like lipoprotein
Probab=30.21 E-value=71 Score=18.79 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=23.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 035320 26 QSTFDGNPLATAVAIASLNVIRDEKLAE 53 (67)
Q Consensus 26 ~~Tf~Gnpla~AAala~l~~i~~~~l~e 53 (67)
-.|-.|||--.++..++|++++.++-.+
T Consensus 19 IntaeG~peKv~~CqsvLnvlKqek~hq 46 (89)
T PF13982_consen 19 INTAEGSPEKVEACQSVLNVLKQEKAHQ 46 (89)
T ss_pred HhhccCChHHHHHHHHHHHHHHhhHHHH
Confidence 3677899999999999999998776544
No 145
>PRK04964 hypothetical protein; Provisional
Probab=29.02 E-value=57 Score=18.17 Aligned_cols=29 Identities=34% Similarity=0.391 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHh-hhhHHHHHHHhhcc
Q 035320 33 PLATAVAIASLNVIR-DEKLAERSRAFEGI 61 (67)
Q Consensus 33 pla~AAala~l~~i~-~~~l~e~~~~~G~~ 61 (67)
|-+..-++.+|+.|- ++.|++.+++...+
T Consensus 24 P~Ai~ca~k~L~~IAad~~Lp~~vRe~AAf 53 (66)
T PRK04964 24 PDALGCVLKALNEIAADEALPESVREKAAY 53 (66)
T ss_pred cHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 444445678888884 78888888887654
No 146
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=28.47 E-value=1.4e+02 Score=20.56 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=24.1
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|.++.+++.+.+.... ..|+-|+++.+++.+.|+
T Consensus 209 y~v~~~~li~~l~~~~--~~~~vs~~~q~a~~~~L~ 242 (339)
T PRK06959 209 FVLAAPALLAALRDAL--GAWTVSGPARHAVRAAFA 242 (339)
T ss_pred EEecCHHHHHHHHHhc--CCCCCcHHHHHHHHHHhC
Confidence 5568889988876432 346667888888887773
No 147
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=28.07 E-value=81 Score=21.40 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHHhhhh---HHHHHHHhhccc
Q 035320 32 NPLATAVAIASLNVIRDEK---LAERSRAFEGIH 62 (67)
Q Consensus 32 npla~AAala~l~~i~~~~---l~e~~~~~G~~L 62 (67)
++.+.+++.+.|+.+.+++ +.++..++.++|
T Consensus 267 ~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l 300 (373)
T TIGR03812 267 SGASAAATYAVIKYLGREGYRKIVAECMENTRYL 300 (373)
T ss_pred hhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 4577888889998876544 556666666554
No 148
>PRK08960 hypothetical protein; Provisional
Probab=27.03 E-value=1e+02 Score=21.31 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=23.6
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+++++.+.+.......+.+.++++-.++.+.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~ 280 (387)
T PRK08960 245 WLVAPPAAVPELEKLAQNLYISASTPAQHAALACFE 280 (387)
T ss_pred EEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhh
Confidence 455788888877654444455667777777766663
No 149
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=26.68 E-value=71 Score=23.04 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHHhhh---hHHHHHHHhhccc
Q 035320 30 DGNPLATAVAIASLNVIRDE---KLAERSRAFEGIH 62 (67)
Q Consensus 30 ~Gnpla~AAala~l~~i~~~---~l~e~~~~~G~~L 62 (67)
+.++.+.++..++++.+.+. ++.+++.++.++|
T Consensus 280 ~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l 315 (452)
T PTZ00094 280 GPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKAL 315 (452)
T ss_pred CchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 35677888888888888542 3455555554443
No 150
>PRK09082 methionine aminotransferase; Validated
Probab=26.65 E-value=1.1e+02 Score=21.24 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=23.6
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|.++.+++++.+........++.++++..++.+.++
T Consensus 247 ~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 282 (386)
T PRK09082 247 YCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLR 282 (386)
T ss_pred hhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHh
Confidence 445788888877654444556677777776655553
No 151
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=26.57 E-value=73 Score=23.21 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 035320 27 STFDGNPLATAVAIASLNVI 46 (67)
Q Consensus 27 ~Tf~Gnpla~AAala~l~~i 46 (67)
=||+.||.++.+++.+++.+
T Consensus 344 DsYahnP~s~~aaL~~l~~~ 363 (479)
T PRK14093 344 ESYNANPASMAAALGVLGRA 363 (479)
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 35999999999999999876
No 152
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=26.55 E-value=1.1e+02 Score=21.42 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHhh---hhHHHHHHHhhccc
Q 035320 32 NPLATAVAIASLNVIRD---EKLAERSRAFEGIH 62 (67)
Q Consensus 32 npla~AAala~l~~i~~---~~l~e~~~~~G~~L 62 (67)
|..++++..++|+.+++ +++.++.+++.+++
T Consensus 288 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l 321 (406)
T TIGR01814 288 PILSVAALRGSLDIFDQAGMEALRKKSLLLTDYL 321 (406)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45788888889998865 44555666665554
No 153
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=26.44 E-value=97 Score=21.59 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=23.2
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|.++++++++.+.......+.+.++++..++.+.|+
T Consensus 248 ~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 283 (391)
T PRK07309 248 LIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALT 283 (391)
T ss_pred EEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHh
Confidence 455888888877543333444567777777766665
No 154
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=26.40 E-value=78 Score=21.40 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=19.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhh
Q 035320 24 LNQSTFDGNPLATAVAIASLNVIRD 48 (67)
Q Consensus 24 ~h~~Tf~Gnpla~AAala~l~~i~~ 48 (67)
..-++.||.|++.|+..+-++...+
T Consensus 184 tv~G~rGGS~vAaAivNaL~~~~~~ 208 (210)
T COG2082 184 TVRGRRGGSPVAAAIVNALADLAWE 208 (210)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHhc
Confidence 4568999999999998887765543
No 155
>PRK07550 hypothetical protein; Provisional
Probab=26.16 E-value=83 Score=21.75 Aligned_cols=37 Identities=3% Similarity=-0.046 Sum_probs=23.7
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNV 45 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~ 45 (67)
|.++++++++.+.......+.+.++++..++.+.++.
T Consensus 247 ~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~ 283 (386)
T PRK07550 247 AVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPN 283 (386)
T ss_pred eeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc
Confidence 3446788877776544445666677777776666643
No 156
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=25.38 E-value=1.5e+02 Score=20.63 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=23.1
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASL 43 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l 43 (67)
|.++++++.+.+.......+++-++++.+++.+.+
T Consensus 256 ~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~ 290 (396)
T PRK09147 256 FVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAW 290 (396)
T ss_pred eecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHh
Confidence 45688888887754333345667777777776665
No 157
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=25.01 E-value=71 Score=20.74 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=24.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHh-----hhhHHHHHHHh
Q 035320 24 LNQSTFDGNPLATAVAIASLNVIR-----DEKLAERSRAF 58 (67)
Q Consensus 24 ~h~~Tf~Gnpla~AAala~l~~i~-----~~~l~e~~~~~ 58 (67)
.+..-|-.+|-+.++.+.+|+.+- -++|.+.+++.
T Consensus 118 ~e~p~y~pDP~AA~alL~~L~kllgl~vd~~~L~e~Ae~i 157 (188)
T TIGR00162 118 GETPGYMIDPKAAKAVLEVLCKMLSLEVSVEALEERAKEM 157 (188)
T ss_pred EeCCCCCCChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 355556688999999999998775 34555555444
No 158
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=24.92 E-value=1.5e+02 Score=20.62 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhh------hhHHHHHHHhhccc
Q 035320 27 STFDGNPLATAVAIASLNVIRD------EKLAERSRAFEGIH 62 (67)
Q Consensus 27 ~Tf~Gnpla~AAala~l~~i~~------~~l~e~~~~~G~~L 62 (67)
.+-|.++++.+++.+-...+++ .++.+.++..+++|
T Consensus 18 ~v~Ga~~i~~~a~~~l~~~~~~~~~~~~~~l~~~l~~~~~~L 59 (310)
T PRK08535 18 EIRGAGRIARAAAEALKDQAEKSDAESPEEFKAEMRAAANIL 59 (310)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 4556677777777776666654 45777777777775
No 159
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=24.34 E-value=81 Score=21.15 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH
Q 035320 24 LNQSTFDGNPLATAVAIASLNV 45 (67)
Q Consensus 24 ~h~~Tf~Gnpla~AAala~l~~ 45 (67)
..-++-||.|++.|+-.|-+..
T Consensus 177 t~~GrkGGS~vAaAivNALl~~ 198 (203)
T PRK05954 177 RVEGRKGGSPVAAAIVNALLIL 198 (203)
T ss_pred EEecCCCcHHHHHHHHHHHHHH
Confidence 4668999999999998887743
No 160
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=24.28 E-value=85 Score=17.95 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHHhhhhH
Q 035320 30 DGNPLATAVAIASLNVIRDEKL 51 (67)
Q Consensus 30 ~Gnpla~AAala~l~~i~~~~l 51 (67)
.|++.+...+.+.++.+.++.+
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~l 26 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEYL 26 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCHC
T ss_pred CCCChHHHHHHHHHHHHHHhhC
Confidence 4889999999999999887643
No 161
>PRK09148 aminotransferase; Validated
Probab=24.13 E-value=1.3e+02 Score=21.16 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=23.0
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+++++.+.+.......+++.++++-.++.+.|+
T Consensus 249 ~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~ 284 (405)
T PRK09148 249 FAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALN 284 (405)
T ss_pred eeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHh
Confidence 445888888877654333455666777666666664
No 162
>PRK06107 aspartate aminotransferase; Provisional
Probab=23.95 E-value=1.3e+02 Score=21.06 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=25.6
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+.+++.+.+.......+++.++++-+++...|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~ 287 (402)
T PRK06107 252 YAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALN 287 (402)
T ss_pred eeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhc
Confidence 445788888888665544566778888888777764
No 163
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.91 E-value=83 Score=18.72 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHH-hhhhHHHHHHH
Q 035320 33 PLATAVAIASLNVI-RDEKLAERSRA 57 (67)
Q Consensus 33 pla~AAala~l~~i-~~~~l~e~~~~ 57 (67)
.+-||-++..|+.| .+++++-|++.
T Consensus 54 ~vRaAtaIsiLeeisnDPNmP~h~RT 79 (93)
T COG1698 54 AVRAATAISILEEISNDPNMPLHART 79 (93)
T ss_pred hhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 46677788999988 48888877664
No 164
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=23.82 E-value=1.7e+02 Score=22.42 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=34.2
Q ss_pred hccccHHHHHHhc---ccCCCCCCCCCHHHHHHHHHHHHHHhhh--hHHHHHHH
Q 035320 9 YKNERTKLMVLLS---ILLNQSTFDGNPLATAVAIASLNVIRDE--KLAERSRA 57 (67)
Q Consensus 9 ~~~g~~~i~~~~~---~~~h~~Tf~Gnpla~AAala~l~~i~~~--~l~e~~~~ 57 (67)
|..++.++.|.+- +++. .|-+=-|.-++-|++++++++.+ +.+.+.++
T Consensus 381 YIAat~~LvDmiRSyAaGFI-FTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hq 433 (570)
T KOG1360|consen 381 YIAATRKLVDMIRSYAAGFI-FTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQ 433 (570)
T ss_pred eehhhhhHHHHHHHhcCceE-EecCCChHHHHhHHHHHHHHhhhhhHHHHHHHH
Confidence 5568889888874 4444 44456799999999999999755 45544443
No 165
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=23.74 E-value=2.5e+02 Score=19.39 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhh---hHHHHHHHhhcc
Q 035320 33 PLATAVAIASLNVIRDE---KLAERSRAFEGI 61 (67)
Q Consensus 33 pla~AAala~l~~i~~~---~l~e~~~~~G~~ 61 (67)
..+.++..++++.+.+. ++.++..++.++
T Consensus 273 ~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~ 304 (398)
T TIGR03392 273 IAGVIGLSAALEWLTDIDIAAAEAWSVSLADL 304 (398)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 33555666666665433 344444444443
No 166
>PRK07777 aminotransferase; Validated
Probab=23.68 E-value=1.3e+02 Score=20.87 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=19.4
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASL 43 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l 43 (67)
|..+++++.+.+....+..++..++....++...+
T Consensus 243 ~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l 277 (387)
T PRK07777 243 WACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHAL 277 (387)
T ss_pred EEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHH
Confidence 44578888877765444455654444443333333
No 167
>PF10711 DUF2513: Hypothetical protein (DUF2513); InterPro: IPR019650 The function of this family is not known.
Probab=23.63 E-value=61 Score=18.81 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhhHHHHHH
Q 035320 39 AIASLNVIRDEKLAERSR 56 (67)
Q Consensus 39 ala~l~~i~~~~l~e~~~ 56 (67)
|..-|+-|+++.+++++.
T Consensus 73 GHdFLd~IRd~~vW~k~K 90 (102)
T PF10711_consen 73 GHDFLDAIRDDTVWNKTK 90 (102)
T ss_pred HHHHHHHhcCchHHHHHH
Confidence 445589999999999887
No 168
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=23.43 E-value=86 Score=22.64 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.6
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 035320 27 STFDGNPLATAVAIASLNVI 46 (67)
Q Consensus 27 ~Tf~Gnpla~AAala~l~~i 46 (67)
-+|+.||-++.+++.+++.+
T Consensus 332 DsYn~nP~s~~aaL~~l~~~ 351 (453)
T PRK10773 332 DSYNANVGSMTAAAQVLAEM 351 (453)
T ss_pred cCCCCCHHHHHHHHHHHHhC
Confidence 46999999999999999765
No 169
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=22.57 E-value=2.6e+02 Score=19.02 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhh
Q 035320 29 FDGNPLATAVAIASLNVIRDE 49 (67)
Q Consensus 29 f~Gnpla~AAala~l~~i~~~ 49 (67)
|.-|+.+.++..++++.+.++
T Consensus 240 ~t~~~~~~~~l~~al~~l~~~ 260 (368)
T PRK13479 240 FTPPTHVVAAFYQALLELEEE 260 (368)
T ss_pred CCCcHHHHHHHHHHHHHHHHh
Confidence 456666667777777776543
No 170
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=22.39 E-value=77 Score=21.13 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=14.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHH
Q 035320 24 LNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 24 ~h~~Tf~Gnpla~AAala~l~ 44 (67)
-.-++.||+|++.|+-.|-++
T Consensus 175 ~~~G~kGGS~vAaAivNALl~ 195 (198)
T PF02570_consen 175 TVRGRKGGSPVAAAIVNALLY 195 (198)
T ss_dssp EESSS---HHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHH
Confidence 466899999999999888765
No 171
>PLN00175 aminotransferase family protein; Provisional
Probab=22.32 E-value=1.7e+02 Score=20.70 Aligned_cols=36 Identities=17% Similarity=0.045 Sum_probs=24.9
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|.++.+++.+.+.......+++.+++.-.++.+.|+
T Consensus 270 ~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~ 305 (413)
T PLN00175 270 WAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALR 305 (413)
T ss_pred eeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 455888888877544334567788887777777764
No 172
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=22.20 E-value=1.1e+02 Score=19.38 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=20.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhh
Q 035320 24 LNQSTFDGNPLATAVAIASLNVIRD 48 (67)
Q Consensus 24 ~h~~Tf~Gnpla~AAala~l~~i~~ 48 (67)
.||+...+||.+..+..-.|+.+++
T Consensus 107 e~Gg~pe~NPf~~~~vr~yLr~vr~ 131 (132)
T PF04852_consen 107 EHGGHPEANPFAARAVRLYLREVRD 131 (132)
T ss_pred HhCCCCCCCchhhHHHHHHHHHHhc
Confidence 5788899999999888887777654
No 173
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=22.17 E-value=53 Score=14.95 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=10.9
Q ss_pred hhhhccccHHHHHHh
Q 035320 6 FYMYKNERTKLMVLL 20 (67)
Q Consensus 6 ~~~~~~g~~~i~~~~ 20 (67)
|=|||.|+.-+...+
T Consensus 4 ~KmyKsGK~Wv~a~~ 18 (29)
T TIGR03715 4 YKMYKSGKQWVFAAI 18 (29)
T ss_pred eEEEecccHHHHHHH
Confidence 448888888876654
No 174
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=22.12 E-value=51 Score=26.71 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=28.4
Q ss_pred hhhhhccccHHHHHHhcc---------cCCCCCCCCCHHHHHHHHHHHH
Q 035320 5 TFYMYKNERTKLMVLLSI---------LLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 5 ~~~~~~~g~~~i~~~~~~---------~~h~~Tf~Gnpla~AAala~l~ 44 (67)
+-++-+.|..+|.+++.. +.++++|.|||+...+--..+-
T Consensus 386 ss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lv 434 (945)
T KOG1288|consen 386 SSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLV 434 (945)
T ss_pred HHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHH
Confidence 345566788888887742 3689999999997666544443
No 175
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=21.95 E-value=1.7e+02 Score=20.11 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=22.5
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASL 43 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l 43 (67)
|..+++++.+.+........++.++++-+++.+.|
T Consensus 228 ~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l 262 (357)
T TIGR03539 228 FVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAAL 262 (357)
T ss_pred EEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHc
Confidence 44577888877754433345667777777776665
No 176
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=21.61 E-value=1.6e+02 Score=20.81 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=23.7
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+.+++.+.+.......+++.++++..++.+.|+
T Consensus 292 ~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~ 327 (431)
T PRK15481 292 FVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLT 327 (431)
T ss_pred EEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHh
Confidence 455788888877543333445677888777777764
No 177
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=21.59 E-value=2.5e+02 Score=18.94 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=23.6
Q ss_pred hccccHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILL-NQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~-h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+++++.+.+.... ...++..++++.+++.+.++
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~ 257 (353)
T PRK05387 221 FAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIE 257 (353)
T ss_pred eeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhc
Confidence 4457888888775432 22456677888777777663
No 178
>COG3517 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.58 E-value=19 Score=27.21 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=28.3
Q ss_pred cccHHHHHHhccc--------------CCCCCCCCCHHHHHHHHHHHHHH-hhhhHHHHHHHh
Q 035320 11 NERTKLMVLLSIL--------------LNQSTFDGNPLATAVAIASLNVI-RDEKLAERSRAF 58 (67)
Q Consensus 11 ~g~~~i~~~~~~~--------------~h~~Tf~Gnpla~AAala~l~~i-~~~~l~e~~~~~ 58 (67)
++++++.+.++.+ .-.+||||.|++|..+--..+-= .+-+|++++..+
T Consensus 122 isK~eL~~d~e~a~e~dQS~lfK~vY~~EyGqfGGEP~g~iIgdY~F~~s~~Dv~LL~~is~V 184 (495)
T COG3517 122 ISKDELLRDFEKAPEFDQSGLFKKVYEEEYGQFGGEPIGAIIGDYEFDNSPPDVKLLQYISKV 184 (495)
T ss_pred CCHHHHHHHHhhcchhhhhHHHHHHHHHhcCCCCCCceeeeeeeeecCCCCccHHHHHHHHHH
Confidence 4667776655321 35799999999998775433211 233455554443
No 179
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=21.38 E-value=2.8e+02 Score=18.88 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhhh
Q 035320 28 TFDGNPLATAVAIASLNVIRDE 49 (67)
Q Consensus 28 Tf~Gnpla~AAala~l~~i~~~ 49 (67)
.|..++....+..++++.+.++
T Consensus 238 ~ft~~~~~~~al~~al~~l~~~ 259 (363)
T TIGR02326 238 RFTSPTHVVHAFAQALLELEKE 259 (363)
T ss_pred CCCCcHHHHHHHHHHHHHHHHh
Confidence 4556677777777777776544
No 180
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=21.32 E-value=2.7e+02 Score=19.04 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=22.3
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+++++.+.+.... ..|+-|.++.+++.+.|+
T Consensus 224 y~i~~~~~i~~l~~~~--~~~~v~~~~~~~a~~~L~ 257 (351)
T PRK01688 224 FTLANEEVINLLLKVI--APYPLSTPVADIAAQALS 257 (351)
T ss_pred HHhCCHHHHHHHHhcc--CCCCCCHHHHHHHHHHHh
Confidence 4558888888776432 235666677777776664
No 181
>cd08320 Pyrin_NALPs Pyrin death domain found in NALP proteins. Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLER (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly
Probab=21.23 E-value=1.8e+02 Score=16.59 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhHHHHHHH
Q 035320 29 FDGNPLATAVAIASLNVIRDEKLAERSRA 57 (67)
Q Consensus 29 f~Gnpla~AAala~l~~i~~~~l~e~~~~ 57 (67)
+-|..-+.-+++.+++.|...++.+++++
T Consensus 54 ~y~~~~A~~~t~~if~~mn~~dL~e~~~~ 82 (86)
T cd08320 54 HYGGQQAWDVTLSIFEKMNLRDLCEKAKR 82 (86)
T ss_pred HcChhHHHHHHHHHHHHHChHHHHHHHHH
Confidence 33456677888889999999999988865
No 182
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=21.09 E-value=2e+02 Score=22.37 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=19.9
Q ss_pred cHHHHHHh--------cccCC----CCCCCCCHHHHHHHHHH
Q 035320 13 RTKLMVLL--------SILLN----QSTFDGNPLATAVAIAS 42 (67)
Q Consensus 13 ~~~i~~~~--------~~~~h----~~Tf~Gnpla~AAala~ 42 (67)
.++|||.+ ++|.| -+.++|+++++|-.+..
T Consensus 207 pd~Imd~L~~yhsvDiQWGNHDilWmgA~sGs~vc~aNvIRI 248 (648)
T COG3855 207 PDKIMDTLINYHSVDIQWGNHDILWMGAASGSKVCMANVIRI 248 (648)
T ss_pred chHHHHHHhhcccccccccCcceEEeecccCChHHHHHHHHH
Confidence 36677765 34544 37788999988765543
No 183
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=20.52 E-value=1e+02 Score=20.76 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=20.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhh
Q 035320 24 LNQSTFDGNPLATAVAIASLNVIRD 48 (67)
Q Consensus 24 ~h~~Tf~Gnpla~AAala~l~~i~~ 48 (67)
..-++-||.|++.|+..|-++.-.+
T Consensus 183 t~~GrkGGS~vAaAivNALl~~~~~ 207 (210)
T PRK06264 183 STIGPKGGTPVAVSIINGIIALSKN 207 (210)
T ss_pred EEecCCCcHHHHHHHHHHHHHHhcc
Confidence 4668999999999999888775544
No 184
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=20.17 E-value=3e+02 Score=18.80 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=23.1
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLN 44 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~ 44 (67)
|..+.+++.+.+.... .+++-++++-.++.+.++
T Consensus 213 ~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~ 246 (335)
T PRK14808 213 YVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALD 246 (335)
T ss_pred EEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHh
Confidence 5568888888875433 346667777777777765
No 185
>KOG3740 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.11 E-value=82 Score=24.94 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=26.6
Q ss_pred hhhccccHHHHHH-hcccCCCCCCCCCHHHHHHHHH
Q 035320 7 YMYKNERTKLMVL-LSILLNQSTFDGNPLATAVAIA 41 (67)
Q Consensus 7 ~~~~~g~~~i~~~-~~~~~h~~Tf~Gnpla~AAala 41 (67)
+||++|.++|.+. +..-.-.+++.+.|..|+-+..
T Consensus 435 Fiyl~gle~VvQ~vL~~q~~at~~a~~P~~caqckt 470 (706)
T KOG3740|consen 435 FIYLVGLEEVVQPVLVAQGKATTLATEPYACAQCKT 470 (706)
T ss_pred HHHHhhhHHHHHHHHHhccccccccCCchhhhhccc
Confidence 5799999999984 4433447889999999987543
Done!