Query 035327
Match_columns 67
No_of_seqs 114 out of 456
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 18:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmh_B Partitioning defective- 96.9 0.002 6.9E-08 38.6 4.9 41 10-61 22-62 (86)
2 1vd2_A Protein kinase C, IOTA 96.4 0.0074 2.5E-07 36.1 4.9 44 8-61 18-61 (89)
3 2ktr_A Sequestosome-1; autopha 95.7 0.018 6.1E-07 36.1 4.5 38 15-62 56-93 (117)
4 2kkc_A Sequestosome-1; P62, PB 95.6 0.023 7.9E-07 34.7 4.8 37 16-62 42-78 (102)
5 1oey_J P40-PHOX, neutrophil cy 93.1 0.23 8E-06 30.7 5.2 38 11-61 28-65 (107)
6 1q1o_A Cell division control p 92.2 0.33 1.1E-05 29.5 4.9 50 8-63 25-74 (98)
7 1pqs_A Cell division control p 91.1 0.5 1.7E-05 27.3 4.7 49 9-63 5-53 (77)
8 2bkf_A Zinc-finger protein NBR 90.3 0.84 2.9E-05 27.2 5.3 34 15-61 27-60 (87)
9 1wj6_A KIAA0049 protein, RSGI 88.6 0.57 2E-05 28.7 3.7 35 14-61 34-68 (101)
10 1e8p_A Endoglucanase, dockerin 81.8 0.45 1.5E-05 25.4 0.8 13 48-60 20-32 (46)
11 2npt_A Dual specificity mitoge 64.8 15 0.00051 22.4 4.7 48 3-62 24-71 (106)
12 2j4m_A Endoglucanase 45A; dock 62.3 1.9 6.4E-05 26.3 0.3 13 48-60 21-33 (100)
13 1oey_A P67-PHOX, neutrophil cy 61.7 13 0.00046 21.5 4.0 44 10-64 18-62 (83)
14 3bux_B E3 ubiquitin-protein li 44.9 29 0.001 25.0 4.2 47 14-61 248-295 (329)
15 3o27_A Putative uncharacterize 39.8 38 0.0013 19.1 3.4 18 44-61 42-59 (68)
16 2cu1_A Mitogen-activated prote 35.8 37 0.0013 20.6 3.1 17 16-32 28-44 (103)
17 3k7i_B IHH, HHG-2, indian hedg 33.0 18 0.00062 24.1 1.5 24 7-30 133-156 (187)
18 3c6v_A Probable tautomerase/de 32.4 57 0.0019 20.4 3.7 38 18-65 104-141 (161)
19 4b6w_A Tubulin-specific chaper 27.6 68 0.0023 17.8 3.2 26 6-33 17-42 (86)
20 4f98_A Hypothetical protein; P 27.1 35 0.0012 19.2 1.8 15 46-60 42-56 (69)
21 2a1k_A GP32 single stranded DN 26.7 35 0.0012 23.5 2.1 22 12-33 202-223 (233)
22 1v58_A Thiol:disulfide interch 26.2 42 0.0014 21.6 2.3 17 48-64 39-55 (241)
23 3pt3_A E3 ubiquitin-protein li 24.3 36 0.0012 20.5 1.6 22 9-30 90-111 (118)
24 1eej_A Thiol:disulfide interch 23.3 50 0.0017 20.7 2.2 17 48-64 35-51 (216)
25 1dd4_C 50S ribosomal protein L 20.6 63 0.0022 16.1 1.9 14 19-32 19-32 (40)
26 1t3b_A Thiol:disulfide interch 20.5 47 0.0016 20.8 1.7 17 48-64 35-51 (211)
27 2cx6_A Hypothetical protein YH 20.3 1E+02 0.0034 17.4 3.0 24 9-32 5-28 (90)
28 1wjn_A Tubulin-folding protein 20.1 1.2E+02 0.0042 16.6 4.4 28 3-32 22-49 (97)
No 1
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.87 E-value=0.002 Score=38.63 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=33.4
Q ss_pred ecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327 10 IDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV 61 (67)
Q Consensus 10 vDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv 61 (67)
+|-+...+|++|...++++|.+. ...+++.|.|.+||++-+
T Consensus 22 ~d~~~~~~fe~f~~lv~~lh~L~-----------~~~f~i~Y~D~dGDLlpI 62 (86)
T 1wmh_B 22 LPRASVSGFQEFSRLLRAVHQIP-----------GLDVLLGYTDAHGDLLPL 62 (86)
T ss_dssp EEGGGCCCHHHHHHHHHHHTTCT-----------TCCCEEEEECTTSCEEEC
T ss_pred ccCCCCCCHHHHHHHHHHHcCCC-----------CCCEEEEEECCCCCEeee
Confidence 44456689999999999999854 135999999999999754
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.35 E-value=0.0074 Score=36.14 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=33.9
Q ss_pred eeecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327 8 RKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV 61 (67)
Q Consensus 8 RkvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv 61 (67)
|.+-+..--+|++|...+.++|.+..+ ..+++.|.|.|||+.-+
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~----------~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNE----------QLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSS----------CCEEEEECCSSSCCEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCC----------CeEEEEEECCCCCcccc
Confidence 344444456999999999999997622 35899999999998654
No 3
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=95.65 E-value=0.018 Score=36.12 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeec
Q 035327 15 YTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVG 62 (67)
Q Consensus 15 ~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvG 62 (67)
-.+|++|...++++|..-.+ ..|.+.|.|.|||+.-+.
T Consensus 56 ~~s~~~L~~kV~~lFp~L~~----------~~f~l~YkDEdGDlItIS 93 (117)
T 2ktr_A 56 PGPSERLLSRVAVLFPALRP----------GGFQAHYRAERGDLVAFS 93 (117)
T ss_dssp CCHHHHHHHHHHHHCTTSCS----------SCEEEEEECTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHccccCC----------CcEEEEEECCCCCEEEec
Confidence 46999999999999962212 359999999999987553
No 4
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.61 E-value=0.023 Score=34.71 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeec
Q 035327 16 TCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVG 62 (67)
Q Consensus 16 ~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvG 62 (67)
.+|++|...++++|..-. +..+.+.|.|.|||..-+.
T Consensus 42 ~s~~~L~~~V~~lFp~l~----------~~~f~l~Y~DedGDlItiS 78 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALR----------PGGFQAHYRAERGDLVAFS 78 (102)
T ss_dssp CHHHHHHHHHHHHCTTSC----------SSCEEEEEECTTCCEEEEC
T ss_pred ccHHHHHHHHHHHccccC----------CCcEEEEEECCCCCEEEec
Confidence 589999999999997331 2359999999999987654
No 5
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.13 E-value=0.23 Score=30.72 Aligned_cols=38 Identities=32% Similarity=0.446 Sum_probs=32.3
Q ss_pred cCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327 11 DLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV 61 (67)
Q Consensus 11 DL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv 61 (67)
||+.--+|.+|..-..+-|... +-.|-|+|.|||+.-+
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~-------------DIaLNYrD~eGDLIri 65 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLVRL 65 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS-------------SEEEEEECTTSCEEEC
T ss_pred ccccCCCHHHHHHHHHHHhccc-------------ceeeeeecCCCCEEEE
Confidence 6788889999999999999843 3588899999999755
No 6
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=92.15 E-value=0.33 Score=29.46 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=37.6
Q ss_pred eeecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeecc
Q 035327 8 RKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGD 63 (67)
Q Consensus 8 RkvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvGD 63 (67)
|.|=++.--+|++|..++.+-|..+.+. + -....++-|+|.|||+..+++
T Consensus 25 ~~i~V~~~i~f~~L~~kI~~Kl~~~~~~--~----i~~~~klkYkDEdGD~Vtl~s 74 (98)
T 1q1o_A 25 FTLLVEKVWNFDDLIMAINSKISNTHNN--N----ISPITKIKYQDEDGDFVVLGS 74 (98)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHCSS--C----CCCCCCEEEECSSSCEEEECS
T ss_pred EEEEecCCCCHHHHHHHHHHHHcCCccc--c----ccceeEEEEEcCCCCEEEEcC
Confidence 5555667778999999999999965111 0 013479999999999988775
No 7
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=91.12 E-value=0.5 Score=27.30 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=35.5
Q ss_pred eecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeecc
Q 035327 9 KIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGD 63 (67)
Q Consensus 9 kvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvGD 63 (67)
.|=...--+|++|...+.+-|... -... .....++-|+|.|||+...++
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~-~~~~-----~~~~~~lkYkDEdGD~Vti~s 53 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNT-HNNN-----ISPITKIKYQDEDGDFVVLGS 53 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTT-TSSC-----SCSTTCCEEEETTTEEEECCS
T ss_pred EEEeCCCCCHHHHHHHHHHHHccc-cccc-----ccceeEEEEEcCCCCEEEEcC
Confidence 344556678999999999999943 1000 124589999999999987765
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=90.31 E-value=0.84 Score=27.19 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327 15 YTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV 61 (67)
Q Consensus 15 ~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv 61 (67)
--++++|...+...|+++ .+++.|.|.|||-.-|
T Consensus 27 ~~tweel~~mvk~~f~L~-------------~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 27 NTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSI 60 (87)
T ss_dssp GCCHHHHHHHHHHHHTCS-------------SEEEEEECTTSCEEEE
T ss_pred CCCHHHHHHHHHHHcCCC-------------ceEEEEEcCCCCEEEE
Confidence 678999999999999976 2799999999997654
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=88.57 E-value=0.57 Score=28.67 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327 14 VYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV 61 (67)
Q Consensus 14 ~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv 61 (67)
.--++++|...+...|+++ .++|.|.|.|||-.-|
T Consensus 34 ~~~tweel~~mvk~~f~L~-------------~~~IkY~DEenD~V~i 68 (101)
T 1wj6_A 34 ENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSI 68 (101)
T ss_dssp TTSCHHHHHHHHHHHHCCS-------------SBCCEEECTTSCEECC
T ss_pred CCCCHHHHHHHHHHHcCCC-------------ceEEEEecCCCCEEEE
Confidence 3678999999999999976 2799999999997643
No 10
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=81.78 E-value=0.45 Score=25.40 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=11.1
Q ss_pred eEEEEeCCCCeEe
Q 035327 48 APTYEDKDGDWML 60 (67)
Q Consensus 48 ~l~YeD~eGD~ml 60 (67)
.++|+|.+|+|=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 5899999999954
No 11
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=64.82 E-value=15 Score=22.38 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=31.4
Q ss_pred CcccceeecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeec
Q 035327 3 GAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVG 62 (67)
Q Consensus 3 G~~igRkvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvG 62 (67)
|.++--.||-..+=++.++..++.+..--- .--..-|||.+||+.-|-
T Consensus 24 ~g~vDwaV~~~~~L~FrDvL~~I~~vmP~a------------T~TAFeYEDE~gDRITVR 71 (106)
T 2npt_A 24 SGAVDWTVHSGPQLLFRDVLDVIGQVLPEA------------TTTAFEYEDEDGDRITVR 71 (106)
T ss_dssp TEEEEEEECC--CCCHHHHHHHHHHHSTTS------------CCSEEEEECTTSCEEEEC
T ss_pred CCccccccCCcccccHHHHHHHHHHhCccc------------eeeeeeeccccCCeeEEc
Confidence 444555666666778888888887765521 112556999999998773
No 12
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=62.33 E-value=1.9 Score=26.33 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=11.1
Q ss_pred eEEEEeCCCCeEe
Q 035327 48 APTYEDKDGDWML 60 (67)
Q Consensus 48 ~l~YeD~eGD~ml 60 (67)
.++|+|.+|||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 6899999999943
No 13
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=61.66 E-value=13 Score=21.48 Aligned_cols=44 Identities=7% Similarity=0.147 Sum_probs=30.2
Q ss_pred ecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEe-CCCCeEeeccC
Q 035327 10 IDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYED-KDGDWMLVGDV 64 (67)
Q Consensus 10 vDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD-~eGD~mlvGDv 64 (67)
|-...=-+|.+|...|.+-+... ++ .-+|-|.| ..|.+++.+|.
T Consensus 18 irvp~~~~y~~L~~~l~~kL~l~-~~----------~~~LsYk~~~s~~~vi~~d~ 62 (83)
T 1oey_A 18 MKTQPGLPYSQVRDMVSKKLELR-LE----------HTKLSYRPRDSNELVPLSED 62 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHTTCC-GG----------GCCEEECCTTCSSCEECCTT
T ss_pred EECCCCCCHHHHHHHHHHHhCCC-cc----------eeEEEeeCCCCCCeeccChH
Confidence 44455568999999999999865 22 13677877 46666666654
No 14
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=44.93 E-value=29 Score=24.96 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHhhcccccccccCC-CCCCCCceEEEEeCCCCeEee
Q 035327 14 VYTCYPELLNALENMFQLTIGKYSERE-GYNGSDYAPTYEDKDGDWMLV 61 (67)
Q Consensus 14 ~~~sY~~L~~~L~~MF~~~~g~~~~~~-~~~~~~~~l~YeD~eGD~mlv 61 (67)
++-+|++....|++--... |..-=|- ...-..|.|.|.+++|+.+..
T Consensus 248 aFlTydEv~~~L~~~~~kp-GsYIfR~ScTrlGqwAIgyV~~~~~I~qt 295 (329)
T 3bux_B 248 AFLTYDEVKARLQKFIHKP-GSYIFRLSCTRLGQWAIGYVTADGNILQT 295 (329)
T ss_dssp TTCCHHHHHHHHGGGTTST-TEEEEEECSSSTTSEEEEEECTTSCEEEE
T ss_pred heeeHHHHHHHHHHhcCCC-CcEEEEeccCccCceEEEEECCCCceeee
Confidence 4778999999999722221 2110000 001246999999999998764
No 15
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=39.79 E-value=38 Score=19.14 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=14.7
Q ss_pred CCCceEEEEeCCCCeEee
Q 035327 44 GSDYAPTYEDKDGDWMLV 61 (67)
Q Consensus 44 ~~~~~l~YeD~eGD~mlv 61 (67)
+-++.++++|++|+..|+
T Consensus 42 gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 42 DDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCEEEEEEEETTEEEEE
T ss_pred CCEEEEEEecCCCeEEEE
Confidence 456899999999988764
No 16
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=35.84 E-value=37 Score=20.61 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHhhccc
Q 035327 16 TCYPELLNALENMFQLT 32 (67)
Q Consensus 16 ~sY~~L~~~L~~MF~~~ 32 (67)
=+|++|...+..+||..
T Consensus 28 v~f~eL~~Kv~~~fGq~ 44 (103)
T 2cu1_A 28 VKLEDLRSKAKIAFGQS 44 (103)
T ss_dssp CCHHHHHHHHHHHHSSC
T ss_pred ccHHHHHHHHHHHhCCe
Confidence 37999999999999964
No 17
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=32.97 E-value=18 Score=24.14 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=17.4
Q ss_pred ceeecCCCCCCHHHHHHHHHHhhc
Q 035327 7 LRKIDLKVYTCYPELLNALENMFQ 30 (67)
Q Consensus 7 gRkvDL~~~~sY~~L~~~L~~MF~ 30 (67)
||.||++..+...+-...|.+|--
T Consensus 133 GRAvDIttsdrd~~k~g~LarLAv 156 (187)
T 3k7i_B 133 GRAVDITTSDRDRNKYGLLARLAV 156 (187)
T ss_dssp TCEEEEEETTCCGGGHHHHHHHHH
T ss_pred ceeeEEEecccchhHHHHHHHHHH
Confidence 899999997777765555555544
No 18
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=32.44 E-value=57 Score=20.43 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeeccCC
Q 035327 18 YPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVP 65 (67)
Q Consensus 18 Y~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvGDvP 65 (67)
|..|...|+.-+++. ++ .=++.+-|....+|.+-|-.|
T Consensus 104 ~~~l~~~L~~~~gi~-~~---------dv~I~I~E~~~e~Wsf~G~~~ 141 (161)
T 3c6v_A 104 LKRIDAFLTPMFEPK-GI---------DWEYFVTEAPRDLWKINGLAP 141 (161)
T ss_dssp HHHHHHHHHHHHGGG-TC---------EEEEEEEEECGGGCEETTBCC
T ss_pred HHHHHHHHHHHcCCC-hh---------hEEEEEEEcCccceEECCCcC
Confidence 555555555555544 21 125666788899999988765
No 19
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=27.58 E-value=68 Score=17.81 Aligned_cols=26 Identities=8% Similarity=0.033 Sum_probs=19.6
Q ss_pred cceeecCCCCCCHHHHHHHHHHhhcccc
Q 035327 6 YLRKIDLKVYTCYPELLNALENMFQLTI 33 (67)
Q Consensus 6 igRkvDL~~~~sY~~L~~~L~~MF~~~~ 33 (67)
.-|+|+++ ..=.+|...|+..+|+..
T Consensus 17 ~E~r~~~s--~TI~~lK~ki~~~~Gip~ 42 (86)
T 4b6w_A 17 PEKRYGLA--QTIESIKENVFTHFATPP 42 (86)
T ss_dssp EEEEEETT--SBHHHHHHHHHTTSCCCG
T ss_pred EEEEcCcc--CcHHHHHHHHHHHHCCCH
Confidence 45666554 567899999999999863
No 20
>4f98_A Hypothetical protein; PF10976 family protein, DUF2790, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.26A {Pseudomonas aeruginosa}
Probab=27.09 E-value=35 Score=19.22 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=11.8
Q ss_pred CceEEEEeCCCCeEe
Q 035327 46 DYAPTYEDKDGDWML 60 (67)
Q Consensus 46 ~~~l~YeD~eGD~ml 60 (67)
.-++||+|..|..--
T Consensus 42 pa~MtY~DS~G~~~~ 56 (69)
T 4f98_A 42 PVTVVYEDHSGELHK 56 (69)
T ss_dssp EEEEEEECTTSCEEE
T ss_pred ccEEEEEcCCCCEEE
Confidence 358899999998643
No 21
>2a1k_A GP32 single stranded DNA binding protein; Zn2+ binding subdomain, 5-stranded beta-sheet, OB fold; 2.00A {Enterobacteria phage RB69} SCOP: b.40.4.7 PDB: 2atq_B* 1gpc_A
Probab=26.69 E-value=35 Score=23.46 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=18.1
Q ss_pred CCCCCCHHHHHHHHHHhhcccc
Q 035327 12 LKVYTCYPELLNALENMFQLTI 33 (67)
Q Consensus 12 L~~~~sY~~L~~~L~~MF~~~~ 33 (67)
-+.|+||++|..+|.+..+..+
T Consensus 202 p~~FKsye~L~~rl~~vmg~~~ 223 (233)
T 2a1k_A 202 KDKFKSFEELNTKFNQVLGTAA 223 (233)
T ss_dssp GGGSCCHHHHHHHHHHHHTC--
T ss_pred hhhcCCHHHHHHHHHHHhCcCc
Confidence 4578999999999999999763
No 22
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=26.20 E-value=42 Score=21.59 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=15.4
Q ss_pred eEEEEeCCCCeEeeccC
Q 035327 48 APTYEDKDGDWMLVGDV 64 (67)
Q Consensus 48 ~l~YeD~eGD~mlvGDv 64 (67)
.++|.+.+|..+++|++
T Consensus 39 ~i~y~~~dg~~~i~G~l 55 (241)
T 1v58_A 39 VTIYLTPDGKHAISGYM 55 (241)
T ss_dssp EEEEECTTSSCEEESCC
T ss_pred eEEEEeCCCCEEEEEEE
Confidence 68999999999999974
No 23
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=24.30 E-value=36 Score=20.55 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=18.1
Q ss_pred eecCCCCCCHHHHHHHHHHhhc
Q 035327 9 KIDLKVYTCYPELLNALENMFQ 30 (67)
Q Consensus 9 kvDL~~~~sY~~L~~~L~~MF~ 30 (67)
.++|-.|+||+.|...|..-..
T Consensus 90 ~L~LP~Y~s~e~L~~kL~~AI~ 111 (118)
T 3pt3_A 90 RLYVPLYSSKQILKQKLLLAIK 111 (118)
T ss_dssp EEEEECCSSHHHHHHHHHHHHC
T ss_pred eeECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999875433
No 24
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=23.27 E-value=50 Score=20.69 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=15.0
Q ss_pred eEEEEeCCCCeEeeccC
Q 035327 48 APTYEDKDGDWMLVGDV 64 (67)
Q Consensus 48 ~l~YeD~eGD~mlvGDv 64 (67)
.+.|.+.+|..++.|++
T Consensus 35 ~~~y~~~dg~~~i~G~l 51 (216)
T 1eej_A 35 GVLYITDDGKHIIQGPM 51 (216)
T ss_dssp EEEEEETTSCEEEESCE
T ss_pred eEEEEcCCCCEEEEeee
Confidence 38999999999999974
No 25
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=20.65 E-value=63 Score=16.12 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhccc
Q 035327 19 PELLNALENMFQLT 32 (67)
Q Consensus 19 ~~L~~~L~~MF~~~ 32 (67)
.+|+.+|++-||++
T Consensus 19 ~eLvk~leekfGVs 32 (40)
T 1dd4_C 19 AELVKKLEDKFGVT 32 (40)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCC
Confidence 48999999999987
No 26
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=20.51 E-value=47 Score=20.83 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=15.1
Q ss_pred eEEEEeCCCCeEeeccC
Q 035327 48 APTYEDKDGDWMLVGDV 64 (67)
Q Consensus 48 ~l~YeD~eGD~mlvGDv 64 (67)
.+.|.+.+|..++.|++
T Consensus 35 ~~~y~~~dg~~~i~G~l 51 (211)
T 1t3b_A 35 GILYVSEDGKYLFEGKL 51 (211)
T ss_dssp EECEEESSSSCEECSCC
T ss_pred EEEEEcCCCCEEEEeeE
Confidence 48999999999999974
No 27
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=20.28 E-value=1e+02 Score=17.38 Aligned_cols=24 Identities=13% Similarity=0.294 Sum_probs=21.9
Q ss_pred eecCCCCCCHHHHHHHHHHhhccc
Q 035327 9 KIDLKVYTCYPELLNALENMFQLT 32 (67)
Q Consensus 9 kvDL~~~~sY~~L~~~L~~MF~~~ 32 (67)
.||++...+-+++..++.+-|++.
T Consensus 5 ~iD~~~i~~~~~f~~~~~~~~~~p 28 (90)
T 2cx6_A 5 TFDFDEIESQEDFYRDFSQTFGLA 28 (90)
T ss_dssp EEETTSCCSHHHHHHHHHHHTTCC
T ss_pred EEeCCCCCCHHHHHHHHHHHhCCc
Confidence 579999999999999999999975
No 28
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.09 E-value=1.2e+02 Score=16.65 Aligned_cols=28 Identities=4% Similarity=0.065 Sum_probs=21.5
Q ss_pred CcccceeecCCCCCCHHHHHHHHHHhhccc
Q 035327 3 GAPYLRKIDLKVYTCYPELLNALENMFQLT 32 (67)
Q Consensus 3 G~~igRkvDL~~~~sY~~L~~~L~~MF~~~ 32 (67)
|..+-|+++ ....-.+|...|++.|++.
T Consensus 22 ~~~~e~~l~--~~~TV~~LK~~i~~~~gip 49 (97)
T 1wjn_A 22 RQILEKQLP--DSMTVQKVKGLLSRLLKVP 49 (97)
T ss_dssp SCCEEEEEE--TTSBHHHHHHHHHTTTTCC
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHHCCC
Confidence 445556655 4568899999999999976
Done!