Query 035333
Match_columns 67
No_of_seqs 10 out of 12
Neff 1.7
Searched_HMMs 13730
Date Mon Mar 25 18:12:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035333.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035333hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bb3a1 c.90.1.1 (A:1-195) Pre 37.2 1.1 8.1E-05 26.2 -2.2 7 19-25 2-8 (195)
2 d1juba_ c.1.4.1 (A:) Dihydroor 29.3 4.1 0.0003 25.4 -0.6 26 7-32 18-45 (311)
3 d1vhva_ c.90.1.1 (A:) Diphthin 23.5 2.8 0.00021 26.0 -2.2 7 19-25 3-9 (251)
4 d2b4ya1 c.31.1.5 (A:36-302) NA 22.3 2.6 0.00019 26.7 -2.6 21 17-37 17-37 (267)
5 d1v54g_ f.23.2.1 (G:) Mitochon 22.1 47 0.0034 19.0 3.4 28 9-36 9-37 (84)
6 d1s5pa_ c.31.1.5 (A:) NAD-depe 21.5 1.2 9E-05 28.1 -4.3 20 17-36 3-22 (235)
7 d1gtea2 c.1.4.1 (A:533-844) Di 21.2 6.5 0.00047 24.8 -0.8 21 12-32 24-44 (312)
8 d2deka1 c.90.1.1 (A:1-265) Dip 19.5 3.9 0.00028 25.6 -2.2 7 19-25 3-9 (265)
9 d1ef4a_ a.4.11.1 (A:) RNA poly 17.5 12 0.00087 20.5 -0.1 14 28-41 9-23 (55)
10 d1d3ga_ c.1.4.1 (A:) Dihydroor 17.4 6.1 0.00045 25.7 -1.7 26 7-32 66-92 (367)
No 1
>d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=37.16 E-value=1.1 Score=26.20 Aligned_cols=7 Identities=43% Similarity=1.217 Sum_probs=3.1
Q ss_pred HHhhhhh
Q 035333 19 LYFVGAG 25 (67)
Q Consensus 19 ~yFVGAg 25 (67)
+||||+|
T Consensus 2 i~~vG~G 8 (195)
T d2bb3a1 2 IWIVGSG 8 (195)
T ss_dssp EEEEECB
T ss_pred EEEEecC
Confidence 3444444
No 2
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}
Probab=29.27 E-value=4.1 Score=25.43 Aligned_cols=26 Identities=31% Similarity=0.125 Sum_probs=20.8
Q ss_pred ccCCC--chhHHHHHHhhhhhhhHHHHH
Q 035333 7 ASGPA--GTKVLRFLYFVGAGFICTAAI 32 (67)
Q Consensus 7 ~~Gpa--~~k~lR~~yFVGAg~icT~aI 32 (67)
++||. ..+.+|.+.--|+|+++++.|
T Consensus 18 aag~~~~~~~~~~~~~~~G~G~vv~kti 45 (311)
T d1juba_ 18 ASGVHCMTIEDLEELKASQAGAYITKSS 45 (311)
T ss_dssp CTTSSCSSHHHHHHHHHSSCSCCBCCCB
T ss_pred CCCCCCCCHHHHHHHHHCCCcEEEEEEE
Confidence 57886 457889889999999988753
No 3
>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.46 E-value=2.8 Score=26.01 Aligned_cols=7 Identities=71% Similarity=1.165 Sum_probs=3.3
Q ss_pred HHhhhhh
Q 035333 19 LYFVGAG 25 (67)
Q Consensus 19 ~yFVGAg 25 (67)
+||||+|
T Consensus 3 L~iVG~G 9 (251)
T d1vhva_ 3 LTFVGLG 9 (251)
T ss_dssp EEEEECB
T ss_pred EEEEeeC
Confidence 4444444
No 4
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.28 E-value=2.6 Score=26.67 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=13.6
Q ss_pred HHHHhhhhhhhHHHHHHHHHH
Q 035333 17 RFLYFVGAGFICTAAINKWRE 37 (67)
Q Consensus 17 R~~yFVGAg~icT~aINk~re 37 (67)
|++.+-|||+-+-.+|-.||.
T Consensus 17 ~ivvlTGAGiS~~SGIPdfR~ 37 (267)
T d2b4ya1 17 HIVIISGAGVSAESGVPTFRG 37 (267)
T ss_dssp EEEEEECGGGGGGGTC-----
T ss_pred cEEEEeCcceehhhCCCCccC
Confidence 357789999999999988765
No 5
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.10 E-value=47 Score=19.00 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=19.3
Q ss_pred CCCchhHHHHHHhhhhhhhH-HHHHHHHH
Q 035333 9 GPAGTKVLRFLYFVGAGFIC-TAAINKWR 36 (67)
Q Consensus 9 Gpa~~k~lR~~yFVGAg~ic-T~aINk~r 36 (67)
+..+.|+-|-+.|++|--+| -.++|.|.
T Consensus 9 a~~~~~lWkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 9 GGTGARTWRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp SCCCHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44578888888887764444 45689884
No 6
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]}
Probab=21.49 E-value=1.2 Score=28.12 Aligned_cols=20 Identities=35% Similarity=0.654 Sum_probs=15.3
Q ss_pred HHHHhhhhhhhHHHHHHHHH
Q 035333 17 RFLYFVGAGFICTAAINKWR 36 (67)
Q Consensus 17 R~~yFVGAg~icT~aINk~r 36 (67)
|++.|.|||+-.-.+|-+||
T Consensus 3 rivvlTGAGiS~~SGIPdfR 22 (235)
T d1s5pa_ 3 RVLVLTGAGISAESGIRTFR 22 (235)
T ss_dssp CEEEEECTHHHHTTTCCCCC
T ss_pred EEEEEeCchhhhccCCCCCc
Confidence 56778899998877786554
No 7
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=21.17 E-value=6.5 Score=24.78 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.0
Q ss_pred chhHHHHHHhhhhhhhHHHHH
Q 035333 12 GTKVLRFLYFVGAGFICTAAI 32 (67)
Q Consensus 12 ~~k~lR~~yFVGAg~icT~aI 32 (67)
+..++|.++-.|+|+++++.|
T Consensus 24 ~~~~~~~~~~~G~G~vv~ktv 44 (312)
T d1gtea2 24 SSSMIRRAFEAGWGFALTKTF 44 (312)
T ss_dssp SHHHHHHHHHHTCSEEECCCB
T ss_pred CHHHHHHHHHcCCcEEEEeee
Confidence 346899999999999999876
No 8
>d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus horikoshii [TaxId: 53953]}
Probab=19.51 E-value=3.9 Score=25.64 Aligned_cols=7 Identities=71% Similarity=1.611 Sum_probs=2.9
Q ss_pred HHhhhhh
Q 035333 19 LYFVGAG 25 (67)
Q Consensus 19 ~yFVGAg 25 (67)
+||||+|
T Consensus 3 Ly~VG~G 9 (265)
T d2deka1 3 LYFIGLG 9 (265)
T ss_dssp EEEEECB
T ss_pred EEEEecC
Confidence 3444444
No 9
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=17.54 E-value=12 Score=20.46 Aligned_cols=14 Identities=21% Similarity=0.657 Sum_probs=9.4
Q ss_pred HHHHH-HHHHHHHHH
Q 035333 28 CTAAI-NKWRELERK 41 (67)
Q Consensus 28 cT~aI-Nk~re~Erk 41 (67)
|-+-| |||.+|.+.
T Consensus 9 CGkvia~k~~~y~~~ 23 (55)
T d1ef4a_ 9 CGKPVSAYFNEYQRR 23 (55)
T ss_dssp TTSCCHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 33334 899999654
No 10
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.35 E-value=6.1 Score=25.67 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=19.6
Q ss_pred ccCCCc-hhHHHHHHhhhhhhhHHHHH
Q 035333 7 ASGPAG-TKVLRFLYFVGAGFICTAAI 32 (67)
Q Consensus 7 ~~Gpa~-~k~lR~~yFVGAg~icT~aI 32 (67)
++|+.. .+.++.++-.|+|+++++.|
T Consensus 66 AsG~~~~~~~i~~~~~~G~G~vv~kTi 92 (367)
T d1d3ga_ 66 AAGFDKHGEAVDGLYKMGFGFVEIGSV 92 (367)
T ss_dssp CTTSSTTSSSHHHHHHHTCSEEEEEEE
T ss_pred CcCCCCCHHHHHHHhhcCCcEEeeccc
Confidence 466642 35678888889999999877
Done!