Query 035336
Match_columns 67
No_of_seqs 109 out of 156
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 18:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_V S26, YS25, 40S ribosoma 100.0 5E-49 1.7E-53 252.2 5.4 64 1-64 1-65 (87)
2 2xzm_Z RPS21E; ribosome, trans 100.0 5.7E-47 2E-51 246.6 5.2 63 1-64 16-79 (97)
3 3iz6_T 40S ribosomal protein S 100.0 1.6E-49 5.6E-54 252.2 -7.4 64 1-64 1-64 (82)
4 1s1d_A Apyrase; adpase, five-b 74.1 0.91 3.1E-05 34.3 0.8 31 11-41 226-270 (331)
5 3qva_A Transthyretin-like prot 44.4 29 0.00098 22.3 3.8 36 32-67 37-82 (116)
6 2c1s_A Biotin binding protein 43.8 7.1 0.00024 25.4 0.8 24 28-52 14-37 (126)
7 3iwv_A 5-hydroxyisourate hydro 43.0 39 0.0013 22.2 4.4 53 5-67 42-105 (138)
8 1f86_A Transthyretin Thr119Met 42.5 41 0.0014 21.3 4.3 52 5-67 17-79 (115)
9 4frw_A Poliovirus receptor-rel 40.3 6.7 0.00023 22.9 0.2 24 16-39 191-214 (218)
10 1oo2_A Transthyretin; retinol- 35.9 52 0.0018 20.9 4.0 52 5-67 18-80 (119)
11 2g2n_A Transthyretin-like prot 35.9 62 0.0021 20.5 4.3 51 5-67 20-81 (114)
12 4fmk_A Poliovirus receptor-rel 35.6 7.9 0.00027 22.7 0.0 21 16-36 197-217 (225)
13 3plx_B Aspartate 1-decarboxyla 35.2 19 0.00066 23.0 1.8 25 33-63 19-43 (102)
14 1uhe_A Aspartate 1-decarboxyla 32.7 25 0.00086 22.2 2.0 21 33-57 18-38 (97)
15 2zg1_A Sialic acid-binding IG- 31.2 11 0.00037 22.6 0.2 21 16-36 193-213 (214)
16 1vc3_B L-aspartate-alpha-decar 31.2 28 0.00094 22.0 2.0 21 33-57 19-39 (96)
17 2jgs_A Circular permutant of a 31.1 15 0.00053 24.4 0.9 35 14-51 93-127 (130)
18 2h4e_A Transthyretin; amyloid, 29.7 87 0.003 20.1 4.3 52 5-67 26-88 (127)
19 1pqh_A Aspartate 1-decarboxyla 28.8 40 0.0014 22.7 2.6 21 33-57 60-80 (143)
20 3oug_A Aspartate 1-decarboxyla 28.2 43 0.0015 21.8 2.6 21 33-57 46-66 (114)
21 2h0e_A Transthyretin-like prot 25.2 52 0.0018 21.0 2.6 37 31-67 36-88 (121)
22 1o9y_A HRCQ2; secretory protei 23.8 29 0.00099 20.2 1.1 32 4-35 47-78 (84)
23 1v5m_A SH2 and PH domain-conta 23.5 27 0.00094 23.3 1.0 42 7-55 58-101 (136)
24 1wid_A DNA-binding protein RAV 22.8 1.2E+02 0.0043 18.6 4.0 48 4-55 22-80 (130)
25 4ank_A Transthyretin; hormone 22.2 80 0.0027 20.8 3.1 40 28-67 58-108 (147)
26 3arc_O Photosystem II manganes 21.9 57 0.0019 23.7 2.5 27 29-55 191-218 (243)
27 2c45_A Aspartate 1-decarboxyla 21.8 42 0.0014 22.5 1.7 20 34-57 44-63 (139)
28 1y55_X Avidin-related protein 20.9 30 0.001 22.4 0.8 35 15-52 2-36 (126)
29 3knb_A Titin; IG-like, titin, 20.5 17 0.00058 20.4 -0.4 21 16-38 79-99 (100)
30 3szh_A Avidin/streptavidin; hi 20.0 54 0.0019 21.3 1.9 23 29-52 17-39 (122)
No 1
>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_T 3u5g_V
Probab=100.00 E-value=5e-49 Score=252.19 Aligned_cols=64 Identities=52% Similarity=0.930 Sum_probs=63.3
Q ss_pred CccccCceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCccee-cCceeEEEEehHhhhcccC
Q 035336 1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIY-TGQFSTFALCGFVRAQVRF 64 (67)
Q Consensus 1 MqNd~g~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~G~~-tg~~~t~ai~G~iR~~Ge~ 64 (67)
||||+|+|||||||||||||||||+|||||||||||++||++|+| ||+++||||||+||+|||+
T Consensus 1 MqNd~g~~VDLYiPRKCSaTNriI~AKDHaSVQIni~~vd~~G~~i~g~~~tyai~G~iR~~Ges 65 (87)
T 3u5c_V 1 MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVRSRGES 65 (87)
T ss_dssp CCCSSSCCCSSCCCCCCTTTCCCCCTTCTTCEEEEEECCCSSSCCCSSCEEEEEECHHHHHTTCH
T ss_pred CcCcCCcEEEEEccccccccCCceecCCcceEEEeeeeECCcccEeCCCeeEEEEehhhhhCcch
Confidence 999999999999999999999999999999999999999999999 9999999999999999995
No 2
>2xzm_Z RPS21E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Z
Probab=100.00 E-value=5.7e-47 Score=246.59 Aligned_cols=63 Identities=38% Similarity=0.669 Sum_probs=62.2
Q ss_pred CccccCceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCcceec-CceeEEEEehHhhhcccC
Q 035336 1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYT-GQFSTFALCGFVRAQVRF 64 (67)
Q Consensus 1 MqNd~g~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~G~~t-g~~~t~ai~G~iR~~Ge~ 64 (67)
||||+|++||||||||||||||||+|||||||||||++||++|+|+ |+++|| |||+||+|||+
T Consensus 16 MqNd~G~~VDLYiPRKCSaTNRiI~AKDHaSVQInIa~vd~~G~~~~g~~~ty-icG~iR~~Ges 79 (97)
T 2xzm_Z 16 LINDKKEKIDAYLPRKCDWSNKLIFSNDQSSVQIAIAEVGENGQATGSKTNVV-LCGSVRSKGEA 79 (97)
T ss_dssp CBCTTCCBCSSSCCCBCTTTCCBCCSSCTTCEEEEEEEECSSSCEEEEEEEEE-ECHHHHHTTCH
T ss_pred cccCCCcEEeEeccccccccCCccccCCceeEEEEhhhcCccccccCCCceEE-EechhhcCcch
Confidence 9999999999999999999999999999999999999999999999 999999 99999999995
No 3
>3iz6_T 40S ribosomal protein S21 (S21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-49 Score=252.23 Aligned_cols=64 Identities=73% Similarity=1.185 Sum_probs=63.3
Q ss_pred CccccCceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCcceecCceeEEEEehHhhhcccC
Q 035336 1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQVRF 64 (67)
Q Consensus 1 MqNd~g~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~G~~tg~~~t~ai~G~iR~~Ge~ 64 (67)
||||+|+|||||||||||||||||+|||||||||||++||++|+|||+++||||||+||+|||+
T Consensus 1 MqNd~g~~VDLYiPRKCSaTNriI~AKDHaSVQInv~~vd~~G~~~g~~~tyai~G~iR~~Ges 64 (82)
T 3iz6_T 1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDA 64 (82)
T ss_dssp CHHHHHHHCSCHHHHHHHHHHHHHHTTSSSSCCCCCEEECSSSCEEEECCCCSCHHHHHHHHHH
T ss_pred CcCcCCcEEEEeccccccccCCccccCCceeEEEEEEEEcCCccCCCCeeEEEEehhhhhCcch
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 4
>1s1d_A Apyrase; adpase, five-blade beta propeller, calcium-binding protein, nucleotide-binding motif, hydrolase; HET: GP2; 1.60A {Homo sapiens} SCOP: b.67.3.1 PDB: 1s18_A* 2h2n_A 2h2u_A
Probab=74.15 E-value=0.91 Score=34.27 Aligned_cols=31 Identities=26% Similarity=0.654 Sum_probs=22.3
Q ss_pred eeeeecccC------------CCCcccCC-CceeeEE-EEEEeCC
Q 035336 11 LYIPRKCSA------------TNRLITSK-DHAAVQI-NIGHVDA 41 (67)
Q Consensus 11 lYiPRKCS~------------TnriI~ak-DHaSVQI-ni~~vd~ 41 (67)
..+|||||- +|-||.|. |..+|++ .|+.+++
T Consensus 226 ~FLPRr~S~e~Yde~~DE~~G~N~li~a~edF~~i~v~~i~~~~p 270 (331)
T 1s1d_A 226 FFLPRRASQERYSEKDDERKGANLLLSASPDFGDIAVSHVGAVVP 270 (331)
T ss_dssp EECCSEEESSCCCHHHHTTCBCCEEEEECTTSSCEEEEECSCCCT
T ss_pred EEeccccCcCcccchhhhhcCccEEEEecCCcceeEEEEcCCCCC
Confidence 468999995 67888866 7777774 4555665
No 5
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=44.41 E-value=29 Score=22.26 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=25.6
Q ss_pred eEEEEEEeCCcceec---------Ccee-EEEEehHhhhcccCCCC
Q 035336 32 VQINIGHVDADGIYT---------GQFS-TFALCGFVRAQVRFPFL 67 (67)
Q Consensus 32 VQIni~~vd~~G~~t---------g~~~-t~ai~G~iR~~Ge~~~~ 67 (67)
..|.-+..|++||.. |.++ +|....+.+++|..||+
T Consensus 37 ~~l~~~~Tn~DGR~~~l~~~~~~~G~Y~L~F~tg~Yf~~~g~~~F~ 82 (116)
T 3qva_A 37 ETLANLVTNAQGRIATFSAAPLPAGRYCLTAETGAWFARAGRESVF 82 (116)
T ss_dssp EEEEEEECCTTSEECCSCSSCBCSSEEEEEECHHHHHHHTTCCCSE
T ss_pred EeEEEeccCCCCCccccccccCCCceEEEEEeHHHHHhhcCCCcce
Confidence 468888999999863 2233 36677788888887774
No 6
>2c1s_A Biotin binding protein A; HET: BSO; 1.75A {Gallus gallus} PDB: 2c1q_A*
Probab=43.79 E-value=7.1 Score=25.44 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=18.3
Q ss_pred CceeeEEEEEEeCCcceecCceeEE
Q 035336 28 DHAAVQINIGHVDADGIYTGQFSTF 52 (67)
Q Consensus 28 DHaSVQIni~~vd~~G~~tg~~~t~ 52 (67)
+.+| ||.|..||.+|.++|.+.+.
T Consensus 14 qlGS-~mtI~~v~~~G~itG~Y~Ta 37 (126)
T 2c1s_A 14 ELGS-NMTISALDVAGTFSGSYQTA 37 (126)
T ss_dssp TTSC-EEEECCCCTTSEEEEEEECS
T ss_pred CCCC-EEEEEEeCCCCEEEEEEECC
Confidence 3444 68888899999999888653
No 7
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=43.01 E-value=39 Score=22.24 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=35.4
Q ss_pred cCceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCcceecC----------cee-EEEEehHhhhcccCCCC
Q 035336 5 EGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTG----------QFS-TFALCGFVRAQVRFPFL 67 (67)
Q Consensus 5 ~g~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~G~~tg----------~~~-t~ai~G~iR~~Ge~~~~ 67 (67)
+|.-|.||-.. ..+-.-..|.-+..|++||... .++ +|....+.+++|..||+
T Consensus 42 agv~V~L~~~~----------~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~L~F~tg~Yf~~~g~~~F~ 105 (138)
T 3iwv_A 42 ANMTIVLHRLD----------PVSSAWNILTTGITNDDGRCPGLITKENFIAGVYKMRFETGKYWDALGETCFY 105 (138)
T ss_dssp TTCEEEEEEEC----------SSSCCEEEEEEEECCTTSCCTTSSCTTTCCSEEEEEEECHHHHHHHTTCCCSC
T ss_pred CCCEEEEEEEC----------CCCCCcEEEEEEecCCCCCcCCccCcccCCCceEEEEEehHHHHHhcCCCccc
Confidence 56677777432 1123346788899999999753 222 36677888999988875
No 8
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ...
Probab=42.52 E-value=41 Score=21.29 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=35.1
Q ss_pred cCceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCcceec----------Ccee-EEEEehHhhhcccCCCC
Q 035336 5 EGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYT----------GQFS-TFALCGFVRAQVRFPFL 67 (67)
Q Consensus 5 ~g~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~G~~t----------g~~~-t~ai~G~iR~~Ge~~~~ 67 (67)
+|.-|.||-.. .|-....|.-+..|++||.. |.++ +|....+.+++|..||+
T Consensus 17 agv~V~L~~~~-----------~~~~~~~l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~tg~Yf~~~g~~~F~ 79 (115)
T 1f86_A 17 INVAVHVFRKA-----------ADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFH 79 (115)
T ss_dssp TTCEEEEEEEC-----------TTSCEEEEEEEECCTTSEECCSCCTTTCCSEEEEEEECHHHHHHHTTCCCSE
T ss_pred CCCEEEEEEcC-----------CCCCcEEEEEeecCCCccccCcCCCCCCcceEEEEEEEhhHhHhhcCCCCCc
Confidence 56677777421 12346789999999999962 2233 36677888888887774
No 9
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=40.33 E-value=6.7 Score=22.92 Aligned_cols=24 Identities=8% Similarity=0.268 Sum_probs=19.4
Q ss_pred cccCCCCcccCCCceeeEEEEEEe
Q 035336 16 KCSATNRLITSKDHAAVQINIGHV 39 (67)
Q Consensus 16 KCS~TnriI~akDHaSVQIni~~v 39 (67)
.|.|+|......--.+++++|++-
T Consensus 191 tC~a~N~~g~~~~~~t~~v~V~~~ 214 (218)
T 4frw_A 191 TCVVSHPGLLQDQRITHILHVSHH 214 (218)
T ss_dssp EEEEECTTCSSCEEEEEECCEECC
T ss_pred EEEEEeCCCCeEEEEEEEEEECcC
Confidence 599999988777778888888763
No 10
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A*
Probab=35.88 E-value=52 Score=20.94 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=35.1
Q ss_pred cCceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCcceec----------Ccee-EEEEehHhhhcccCCCC
Q 035336 5 EGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYT----------GQFS-TFALCGFVRAQVRFPFL 67 (67)
Q Consensus 5 ~g~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~G~~t----------g~~~-t~ai~G~iR~~Ge~~~~ 67 (67)
+|.-|.||-.. .|-....|.-+..|++||.. |.++ +|....+.+++|..||+
T Consensus 18 agv~V~L~~~~-----------~~~~~~~l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~tg~Yf~~~g~~~F~ 80 (119)
T 1oo2_A 18 GSVALKVSQKT-----------ADGGWTQIATGVTDATGEIHNLITEQQFPAGVYRVEFDTKAYWTNQGSTPFH 80 (119)
T ss_dssp TTCEEEEEEEC-----------TTSCEEEEEEEECCTTSCCTTCSCGGGCCSEEEEEEECHHHHHHHTTCCCSE
T ss_pred CCCEEEEEEeC-----------CCCCcEEEEEEecCCCCcccCcCCCCCCCceEEEEEEEhHHhHhhcCCCCCc
Confidence 56677777411 12346778999999999962 2333 36677888888888774
No 11
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=35.87 E-value=62 Score=20.47 Aligned_cols=51 Identities=20% Similarity=0.319 Sum_probs=34.0
Q ss_pred cCceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCcceec----------Ccee-EEEEehHhhhcccCCCC
Q 035336 5 EGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYT----------GQFS-TFALCGFVRAQVRFPFL 67 (67)
Q Consensus 5 ~g~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~G~~t----------g~~~-t~ai~G~iR~~Ge~~~~ 67 (67)
+|.-|.||-... -.-..|.-+..|++||.. |.++ +|....+.+++|..||+
T Consensus 20 agv~V~L~~~~~------------~~~~~l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~tg~Yf~~~~~~~F~ 81 (114)
T 2g2n_A 20 ADVTVTLEKKAD------------NGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLESFF 81 (114)
T ss_dssp CSCEEEEEEECS------------SSEEEEEEEECCTTSEESCCSCSSCCCSEEEEEEECHHHHHHHTTCCCSC
T ss_pred CCCEEEEEEeCC------------CCcEEEEEEecCCCCccccccCCCCCCceEEEEEEEhhHhHhhcCCCCCc
Confidence 567788875322 124668888899999862 2222 36677888888888775
No 12
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=35.57 E-value=7.9 Score=22.71 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=16.1
Q ss_pred cccCCCCcccCCCceeeEEEE
Q 035336 16 KCSATNRLITSKDHAAVQINI 36 (67)
Q Consensus 16 KCS~TnriI~akDHaSVQIni 36 (67)
.|.|+|.-....-.++|+++|
T Consensus 197 tC~a~N~~~~~~~~~~v~l~V 217 (225)
T 4fmk_A 197 TCRVEHESFEEPILLPVTLSV 217 (225)
T ss_dssp EEEEECTTCSSCEEEEEECCB
T ss_pred EEEEEcCCCCeEEEEEEEEEE
Confidence 599999877776677777765
No 13
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=35.18 E-value=19 Score=22.97 Aligned_cols=25 Identities=16% Similarity=0.456 Sum_probs=16.1
Q ss_pred EEEEEEeCCcceecCceeEEEEehHhhhccc
Q 035336 33 QINIGHVDADGIYTGQFSTFALCGFVRAQVR 63 (67)
Q Consensus 33 QIni~~vd~~G~~tg~~~t~ai~G~iR~~Ge 63 (67)
|+.|..++ || .+|.||+|.|. ..|.
T Consensus 19 ~V~I~Nvn-NG---~Rf~TYvI~Ge--GSG~ 43 (102)
T 3plx_B 19 KVQVVNVN-NG---ARFETYTIATQ--EEGV 43 (102)
T ss_dssp EEEEEETT-TC---CEEEEECEEES--STTC
T ss_pred EEEEEECC-CC---cEEEEEEEEcC--CCCE
Confidence 44455555 55 46789999987 4443
No 14
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=32.65 E-value=25 Score=22.21 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=14.0
Q ss_pred EEEEEEeCCcceecCceeEEEEehH
Q 035336 33 QINIGHVDADGIYTGQFSTFALCGF 57 (67)
Q Consensus 33 QIni~~vd~~G~~tg~~~t~ai~G~ 57 (67)
|+.|..++ || .+|.||+|.|.
T Consensus 18 ~V~IvNvn-NG---~RfeTYvI~Ge 38 (97)
T 1uhe_A 18 KVEIVDVN-NG---ERFSTYVILGK 38 (97)
T ss_dssp EEEEEETT-TC---CEEEEECEEEC
T ss_pred EEEEEECC-CC---ceEEEEEEeec
Confidence 44455555 55 46789999885
No 15
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=31.23 E-value=11 Score=22.57 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=12.5
Q ss_pred cccCCCCcccCCCceeeEEEE
Q 035336 16 KCSATNRLITSKDHAAVQINI 36 (67)
Q Consensus 16 KCS~TnriI~akDHaSVQIni 36 (67)
.|.++|..-.....++|+++|
T Consensus 193 ~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 193 TCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp EEEEECC----CCEEEEECCC
T ss_pred EEEEEeCCCCcceEEEEEEEe
Confidence 488888766666777777765
No 16
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=31.18 E-value=28 Score=21.99 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=13.8
Q ss_pred EEEEEEeCCcceecCceeEEEEehH
Q 035336 33 QINIGHVDADGIYTGQFSTFALCGF 57 (67)
Q Consensus 33 QIni~~vd~~G~~tg~~~t~ai~G~ 57 (67)
|+.|..++ || .+|.||+|.|.
T Consensus 19 ~V~IvNvn-NG---~Rf~TYvI~Ge 39 (96)
T 1vc3_B 19 QVDIYDIT-NG---ARLTTYALPGE 39 (96)
T ss_dssp EEEEEETT-TC---CEEEEECEEEC
T ss_pred EEEEEECC-CC---ceEEEEEEEcc
Confidence 44455555 55 46789999884
No 17
>2jgs_A Circular permutant of avidin; biotin-binding protein, glycoprotein; HET: BTN; 1.9A {Gallus gallus}
Probab=31.07 E-value=15 Score=24.37 Aligned_cols=35 Identities=37% Similarity=0.702 Sum_probs=23.1
Q ss_pred eecccCCCCcccCCCceeeEEEEEEeCCcceecCceeE
Q 035336 14 PRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFST 51 (67)
Q Consensus 14 PRKCS~TnriI~akDHaSVQIni~~vd~~G~~tg~~~t 51 (67)
-|||+.+.+-.. |-+| +|.|..||.+|.|+|.+.|
T Consensus 93 ~~~c~l~G~W~n--~lgs-~m~i~~v~~~G~f~G~y~t 127 (130)
T 2jgs_A 93 ARKCSLTGKWTN--DLGS-NMTIGAVNSRGEFTGTYIT 127 (130)
T ss_dssp ---CCSCEEEEC--TTCC-EEEECCCCSSCEEEEEEEC
T ss_pred ccccccceEEeh--hcCC-eEEEEEeccCcEEEEEEEc
Confidence 368876655442 3333 6899999999999998754
No 18
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A
Probab=29.68 E-value=87 Score=20.13 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=34.7
Q ss_pred cCceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCcceec----------Ccee-EEEEehHhhhcccCCCC
Q 035336 5 EGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYT----------GQFS-TFALCGFVRAQVRFPFL 67 (67)
Q Consensus 5 ~g~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~G~~t----------g~~~-t~ai~G~iR~~Ge~~~~ 67 (67)
+|.-|.||-.. .|-.-..|.-+..|++||.. |.++ +|....+.+++|..||+
T Consensus 26 agv~V~L~~~~-----------~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~L~F~tg~Yf~~~g~~~F~ 88 (127)
T 2h4e_A 26 INVAVHVFRKA-----------ADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFH 88 (127)
T ss_dssp TTCEEEEEEEC-----------TTSCEEEEEEEECCTTSEECCSCCTTTCCSEEEEEEECHHHHHHHTTCCCSE
T ss_pred CCCEEEEEEeC-----------CCCCeEEEEEeecCCCccccCcCCCCCccceEEEEEEEhHHhHhhcCCCCCc
Confidence 56677777421 12335678899999999962 2233 36677888888888774
No 19
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=28.81 E-value=40 Score=22.71 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=13.1
Q ss_pred EEEEEEeCCcceecCceeEEEEehH
Q 035336 33 QINIGHVDADGIYTGQFSTFALCGF 57 (67)
Q Consensus 33 QIni~~vd~~G~~tg~~~t~ai~G~ 57 (67)
|+.|..++ || ..|.||+|.|.
T Consensus 60 kV~IvNvn-NG---~RfeTYvI~Ge 80 (143)
T 1pqh_A 60 AIDIWNVT-NG---KRFSTYAIAAE 80 (143)
T ss_dssp EEEEEETT-TC---CEEEEEEEEEC
T ss_pred EEEEEECC-CC---ceEEEEEEEcc
Confidence 34444444 45 35789999884
No 20
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=28.24 E-value=43 Score=21.78 Aligned_cols=21 Identities=14% Similarity=0.515 Sum_probs=13.3
Q ss_pred EEEEEEeCCcceecCceeEEEEehH
Q 035336 33 QINIGHVDADGIYTGQFSTFALCGF 57 (67)
Q Consensus 33 QIni~~vd~~G~~tg~~~t~ai~G~ 57 (67)
|+.|..++ || .+|.||+|.|.
T Consensus 46 ~V~I~Nvn-NG---~Rf~TYvI~Ge 66 (114)
T 3oug_A 46 KVQVVNLN-NG---ERLETYVIKGE 66 (114)
T ss_dssp EEEEEETT-TC---CEEEEEEEEEC
T ss_pred EEEEEECC-CC---ceEEEEEEEcc
Confidence 34444544 45 35789999884
No 21
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=25.21 E-value=52 Score=21.04 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=25.1
Q ss_pred eeEEEEEEeCCcceec-----------Ccee-EEEEehHhhhc----ccCCCC
Q 035336 31 AVQINIGHVDADGIYT-----------GQFS-TFALCGFVRAQ----VRFPFL 67 (67)
Q Consensus 31 SVQIni~~vd~~G~~t-----------g~~~-t~ai~G~iR~~----Ge~~~~ 67 (67)
-..|.-+..|++||.. |.++ +|....+.+++ |+.||+
T Consensus 36 ~~~l~~~~Tn~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf~~~~~~~~~~~F~ 88 (121)
T 2h0e_A 36 ESIMKEVYTNNDGRVDVPLLAGEELMSGEYVMEFHAGDYFASKNMNAADQPFL 88 (121)
T ss_dssp SCCCEEEECCTTSSCSSCSEEGGGCCSEEEEEEECHHHHHHTTC--CCSSCSC
T ss_pred ceEEEEEecCCCCCccCCcCCCCCcCceEEEEEEEhHHhHhhccccCCCCCCc
Confidence 3457788889999862 2333 36677888888 677764
No 22
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=23.81 E-value=29 Score=20.24 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=28.4
Q ss_pred ccCceeeeeeeecccCCCCcccCCCceeeEEE
Q 035336 4 EEGQNMDLYIPRKCSATNRLITSKDHAAVQIN 35 (67)
Q Consensus 4 d~g~~VDlYiPRKCS~TnriI~akDHaSVQIn 35 (67)
..++-|++|+=-+.-+...+...+|+-.|||.
T Consensus 47 ~~~e~v~i~vng~~~~~ge~g~~~~~~avrI~ 78 (84)
T 1o9y_A 47 ISPGHATLCHGEQVVAEGELVDVEGRLGLQIT 78 (84)
T ss_dssp SCTTEEEEEETTEEEEEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEECCEEEEEEEEEEECCEEEEEEE
Confidence 35788999999999999999999999999985
No 23
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=23.55 E-value=27 Score=23.27 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=25.1
Q ss_pred ceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCcce--ecCceeEEEEe
Q 035336 7 QNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGI--YTGQFSTFALC 55 (67)
Q Consensus 7 ~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~G~--~tg~~~t~ai~ 55 (67)
-+.++|.|.|||-...-|.=.+ |.+|-++=+ |.....||+|-
T Consensus 58 y~LEfy~PPkssKpK~~i~cs~-------I~EVR~tt~LEmPD~~nTFVlK 101 (136)
T 1v5m_A 58 FRLEFFVPPKASRPKVSIPLSA-------IIEVRTTMPLEMPEKDNTFVLK 101 (136)
T ss_dssp EEEEEESSTTSSSCSSCEETTT-------CCBCCCCCCSSSCCCTTEECCB
T ss_pred eEEEEecCCcccCCccccchhh-------hhhhhhccccccCCccceEEEE
Confidence 6899999999986665554332 234444322 35555555553
No 24
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=22.80 E-value=1.2e+02 Score=18.60 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=24.8
Q ss_pred ccCceeeeeeeecccCCCCcccCCCc----eeeEEEEEEeCCcce-------ecCceeEEEEe
Q 035336 4 EEGQNMDLYIPRKCSATNRLITSKDH----AAVQINIGHVDADGI-------YTGQFSTFALC 55 (67)
Q Consensus 4 d~g~~VDlYiPRKCS~TnriI~akDH----aSVQIni~~vd~~G~-------~tg~~~t~ai~ 55 (67)
|-+..--|.||++|.... .+..|- ..+.| ...|++|+ +-++...|.|+
T Consensus 22 Dv~~~~rL~iPk~~a~~~--lP~~~~~~~~~~~~l--~l~D~~Gk~W~fr~~~~~~~~~~~Lt 80 (130)
T 1wid_A 22 DVGKLNRLVIPKHHAEKH--FPLPSSNVSVKGVLL--NFEDVNGKVWRFRYSYWNSSQSYVLT 80 (130)
T ss_dssp TTSSSCCEEECHHHHTTT--SCCCSSCCSSCCEEE--EEEETTTEEEEEEEEEETTTTEEEEE
T ss_pred HcCCCCEEEeCHHHHHhh--CCccccccCCCcEEE--EEEeCCCCEEEEEEEEECCCCceEEc
Confidence 334444689999986543 333332 22344 44566664 22333456664
No 25
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=22.23 E-value=80 Score=20.75 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=29.0
Q ss_pred CceeeEEEEEEeCCcceecC----------cee-EEEEehHhhhcccCCCC
Q 035336 28 DHAAVQINIGHVDADGIYTG----------QFS-TFALCGFVRAQVRFPFL 67 (67)
Q Consensus 28 DHaSVQIni~~vd~~G~~tg----------~~~-t~ai~G~iR~~Ge~~~~ 67 (67)
|-.-.+|.-+..|++||... .++ +|....+.+++|..||+
T Consensus 58 ~~~~~~l~~~~Td~DGR~~~ll~~~~~~~G~Y~L~F~tg~Yf~~~g~~~F~ 108 (147)
T 4ank_A 58 DDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFH 108 (147)
T ss_dssp TSCEEEEEEEECCTTSEECCSCCTTTCCSEEEEEEECHHHHHHHTTCCCSE
T ss_pred CCCeEEEEEEEeCCCCCCCCCCCccccCCceEEEEEEHHHHHHhcCCCccc
Confidence 33457888899999999753 222 36777888988887774
No 26
>3arc_O Photosystem II manganese-stabilizing polypeptide; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_O* 2axt_O* 3bz2_O* 3prq_O* 3prr_O* 1s5l_O* 3kzi_O* 3a0b_O* 3a0h_O*
Probab=21.86 E-value=57 Score=23.67 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=21.7
Q ss_pred ceeeEEEEEEeCC-cceecCceeEEEEe
Q 035336 29 HAAVQINIGHVDA-DGIYTGQFSTFALC 55 (67)
Q Consensus 29 HaSVQIni~~vd~-~G~~tg~~~t~ai~ 55 (67)
.+++-+.|++||+ +|.+-|-|...-.+
T Consensus 191 ~G~i~l~V~kvd~~TGEiaGvF~s~QpS 218 (243)
T 3arc_O 191 KGQISLNVAKVDGRTGEIAGTFESEQLS 218 (243)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEEC
T ss_pred cceEEEEEEeeCCCCceEEEEEEeeCCC
Confidence 4678999999998 89998888765443
No 27
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=21.81 E-value=42 Score=22.49 Aligned_cols=20 Identities=30% Similarity=0.655 Sum_probs=12.6
Q ss_pred EEEEEeCCcceecCceeEEEEehH
Q 035336 34 INIGHVDADGIYTGQFSTFALCGF 57 (67)
Q Consensus 34 Ini~~vd~~G~~tg~~~t~ai~G~ 57 (67)
+.|..++ || .+|.||+|.|.
T Consensus 44 V~IvNvn-NG---~RfeTYvI~Ge 63 (139)
T 2c45_A 44 VTIVDID-NG---ARLVTYAITGE 63 (139)
T ss_dssp EEEEETT-TC---CEEEECEEEEC
T ss_pred EEEEECC-CC---ceEEEEEEEcc
Confidence 3444444 45 35789999884
No 28
>1y55_X Avidin-related protein 4/5; streptavidin, biotin, avidin related molecule, high thermostability, sugar binding protein; HET: BTN; 1.00A {Gallus gallus} PDB: 1y52_X 1y53_X* 2of8_A* 2of9_A 2ofb_A* 2ofa_A* 2fhn_X* 2fhl_A* 3mm0_A 1wbi_A* 1vyo_A 1ij8_A* 1ave_A* 1avd_A* 1ldo_A* 1ldq_A* 1lel_A* 2avi_A* 3fdc_A* 3vgw_A* ...
Probab=20.86 E-value=30 Score=22.36 Aligned_cols=35 Identities=31% Similarity=0.557 Sum_probs=20.8
Q ss_pred ecccCCCCcccCCCceeeEEEEEEeCCcceecCceeEE
Q 035336 15 RKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTF 52 (67)
Q Consensus 15 RKCS~TnriI~akDHaSVQIni~~vd~~G~~tg~~~t~ 52 (67)
|||+++..=- ++.+| +|.|..+|.+|.++|.+.+.
T Consensus 2 ~~c~l~G~W~--NqlGS-~m~I~~~~~~G~itGtY~ta 36 (126)
T 1y55_X 2 RKCSLTGKWT--NNLGS-IMTIRAVNSRGEFTGTYLTA 36 (126)
T ss_dssp -CCCCCEEEE--ETTSC-EEEECCCCTTSEEEEEEECS
T ss_pred CCCCCcEEEE--cCCCC-EEEEEEeCCCCEEEEEEECC
Confidence 5665443211 23444 57777778888888887663
No 29
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=20.48 E-value=17 Score=20.38 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=12.7
Q ss_pred cccCCCCcccCCCceeeEEEEEE
Q 035336 16 KCSATNRLITSKDHAAVQINIGH 38 (67)
Q Consensus 16 KCS~TnriI~akDHaSVQIni~~ 38 (67)
.|.++|.. ..+.++++++|..
T Consensus 79 ~C~a~N~~--G~~~~~~~l~V~~ 99 (100)
T 3knb_A 79 TLSLGNEF--GSDSATVNIHIRS 99 (100)
T ss_dssp EEEEEETT--EEEEEEEEEEEEC
T ss_pred EEEEEECC--CEEEEEEEEEEEE
Confidence 57777754 2355666666643
No 30
>3szh_A Avidin/streptavidin; high affinity systems, biotin, shwanav biotin-binding protein; 1.07A {Shewanella denitrificans} PDB: 3szi_A 3szj_A* 3t2x_A 3t2w_A
Probab=20.04 E-value=54 Score=21.27 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=16.7
Q ss_pred ceeeEEEEEEeCCcceecCceeEE
Q 035336 29 HAAVQINIGHVDADGIYTGQFSTF 52 (67)
Q Consensus 29 HaSVQIni~~vd~~G~~tg~~~t~ 52 (67)
.+|+ +.|..+|.+|.++|.+++=
T Consensus 17 lGS~-m~I~~~~~~G~itGtY~Ta 39 (122)
T 3szh_A 17 DGST-LYINSINAQGELTGSYINR 39 (122)
T ss_dssp TSCE-EEEEEECTTCEEEEEEEBC
T ss_pred CCCE-EEEEEeCCCCEEEEEEEcc
Confidence 3443 5677788899999988763
Done!