BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035338
(67 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|15224217|ref|NP_179464.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|297836770|ref|XP_002886267.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp.
lyrata]
gi|4185140|gb|AAD08943.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|21592486|gb|AAM64436.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|26452632|dbj|BAC43399.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|28973515|gb|AAO64082.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|297332107|gb|EFH62526.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp.
lyrata]
gi|330251706|gb|AEC06800.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
Length = 88
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 66/88 (75%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVLD+AEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
IKKNTRKPLGRILLKGDNITLMMNTGK
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNTGK 88
>gi|242051601|ref|XP_002454946.1| hypothetical protein SORBIDRAFT_03g001950 [Sorghum bicolor]
gi|241926921|gb|EES00066.1| hypothetical protein SORBIDRAFT_03g001950 [Sorghum bicolor]
Length = 88
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 66/88 (75%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVLDDAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KKNTRK LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKNTRKSLGRILLKGDNITLMMNTGK 88
>gi|357146132|ref|XP_003573886.1| PREDICTED: small nuclear ribonucleoprotein E-like [Brachypodium
distachyon]
Length = 88
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 66/88 (75%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDMRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
+IKKNTRK LGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKNTRKSLGRILLKGDNITLMMNTGK 88
>gi|313586495|gb|ADR71258.1| small nuclear ribonucleoprotein E [Hevea brasiliensis]
Length = 88
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 65/88 (73%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDMRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
+IKK TRK LGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKTRKSLGRILLKGDNITLMMNTGK 88
>gi|357145040|ref|XP_003573502.1| PREDICTED: small nuclear ribonucleoprotein E-like [Brachypodium
distachyon]
Length = 88
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 66/88 (75%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KKNTRK LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKNTRKSLGRILLKGDNITLMMNTGK 88
>gi|18417572|ref|NP_567844.1| small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|297798942|ref|XP_002867355.1| hypothetical protein ARALYDRAFT_913445 [Arabidopsis lyrata subsp.
lyrata]
gi|21593343|gb|AAM65292.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51968366|dbj|BAD42875.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51968768|dbj|BAD43076.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51971773|dbj|BAD44551.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|88010920|gb|ABD38873.1| At4g30330 [Arabidopsis thaliana]
gi|297313191|gb|EFH43614.1| hypothetical protein ARALYDRAFT_913445 [Arabidopsis lyrata subsp.
lyrata]
gi|332660353|gb|AEE85753.1| small nuclear ribonucleoprotein E [Arabidopsis thaliana]
Length = 88
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 64/88 (72%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVLD+AEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
IKK TRKPLGRILLKGDNITLMMN GK
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNAGK 88
>gi|225455956|ref|XP_002278114.1| PREDICTED: small nuclear ribonucleoprotein E [Vitis vinifera]
gi|297734216|emb|CBI15463.3| unnamed protein product [Vitis vinifera]
Length = 88
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 66/88 (75%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MA+TKVQRIMTQPINLIFRFLQS GFDEYMNLVLDDAEEV
Sbjct: 1 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KKNT+K LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKNTKKTLGRILLKGDNITLMMNTGK 88
>gi|195606896|gb|ACG25278.1| small nuclear ribonucleoprotein E [Zea mays]
gi|195611048|gb|ACG27354.1| small nuclear ribonucleoprotein E [Zea mays]
gi|413947730|gb|AFW80379.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 66/88 (75%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KKNTRK LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKNTRKSLGRILLKGDNITLMMNSGK 88
>gi|282848216|gb|ADB02889.1| small nuclear ribonucleoprotein polypeptide [Jatropha curcas]
Length = 88
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 65/88 (73%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KK TRK LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKTRKSLGRILLKGDNITLMMNSGK 88
>gi|115443949|ref|NP_001045754.1| Os02g0126700 [Oryza sativa Japonica Group]
gi|41053075|dbj|BAD08019.1| putative small nuclear ribonucleoprotein polypeptide E [Oryza
sativa Japonica Group]
gi|113535285|dbj|BAF07668.1| Os02g0126700 [Oryza sativa Japonica Group]
gi|215686543|dbj|BAG88796.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189970|gb|EEC72397.1| hypothetical protein OsI_05681 [Oryza sativa Indica Group]
gi|222622094|gb|EEE56226.1| hypothetical protein OsJ_05214 [Oryza sativa Japonica Group]
Length = 88
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 66/88 (75%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVLD+AEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
+IKK+TRK LGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKDTRKSLGRILLKGDNITLMMNTGK 88
>gi|195638708|gb|ACG38822.1| small nuclear ribonucleoprotein E [Zea mays]
gi|223945527|gb|ACN26847.1| unknown [Zea mays]
gi|414875728|tpg|DAA52859.1| TPA: Small nuclear ribonucleoprotein E isoform 1 [Zea mays]
gi|414875729|tpg|DAA52860.1| TPA: Small nuclear ribonucleoprotein E isoform 2 [Zea mays]
Length = 88
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 66/88 (75%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KKNTRK LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKNTRKTLGRILLKGDNITLMMNSGK 88
>gi|356562483|ref|XP_003549500.1| PREDICTED: small nuclear ribonucleoprotein E [Glycine max]
gi|255628153|gb|ACU14421.1| unknown [Glycine max]
Length = 88
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 64/88 (72%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQR+MTQPINLIFRFLQS GFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
IKK +RK LGRILLKGDNITLMMNTGK
Sbjct: 61 SIKKKSRKTLGRILLKGDNITLMMNTGK 88
>gi|356547766|ref|XP_003542280.1| PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max]
gi|255627911|gb|ACU14300.1| unknown [Glycine max]
Length = 88
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 65/88 (73%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQR+MTQPINLIFRFLQS GFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
+IKK +RK LGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSRKTLGRILLKGDNITLMMNTGK 88
>gi|255563612|ref|XP_002522808.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
gi|223538046|gb|EEF39659.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
Length = 88
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 65/88 (73%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQFWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KK +RK LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
>gi|356508935|ref|XP_003523208.1| PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max]
gi|356516401|ref|XP_003526883.1| PREDICTED: small nuclear ribonucleoprotein E [Glycine max]
gi|388501720|gb|AFK38926.1| unknown [Lotus japonicus]
Length = 88
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 65/88 (73%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQR+MTQPINLIFRFLQS GFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KK +RK LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
>gi|224117550|ref|XP_002331664.1| predicted protein [Populus trichocarpa]
gi|224143797|ref|XP_002325079.1| predicted protein [Populus trichocarpa]
gi|118483404|gb|ABK93602.1| unknown [Populus trichocarpa]
gi|222866513|gb|EEF03644.1| predicted protein [Populus trichocarpa]
gi|222874083|gb|EEF11214.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 65/88 (73%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVL+DAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
+IKK +RK LGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSRKSLGRILLKGDNITLMMNTGK 88
>gi|449444030|ref|XP_004139778.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis
sativus]
gi|449444032|ref|XP_004139779.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis
sativus]
gi|449502888|ref|XP_004161771.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis
sativus]
Length = 88
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 65/88 (73%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KK +RK LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 88
>gi|226529493|ref|NP_001148430.1| small nuclear ribonucleoprotein E [Zea mays]
gi|195619228|gb|ACG31444.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 66/88 (75%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEY+NLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYINLVLEDAEEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KKNTRK LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKNTRKSLGRILLKGDNITLMMNSGK 88
>gi|357455361|ref|XP_003597961.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|357491039|ref|XP_003615807.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|355487009|gb|AES68212.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|355517142|gb|AES98765.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|388498322|gb|AFK37227.1| unknown [Medicago truncatula]
Length = 88
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 65/88 (73%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQR+MTQPINLIFRFLQS GFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KK ++K LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 88
>gi|449457115|ref|XP_004146294.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 1
[Cucumis sativus]
Length = 88
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 65/88 (73%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KK ++K LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNSGK 88
>gi|255629853|gb|ACU15277.1| unknown [Glycine max]
Length = 88
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 64/88 (72%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQR+MTQPINLIFRFLQ GFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQGKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KK +RK LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
>gi|168008828|ref|XP_001757108.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691606|gb|EDQ77967.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 64/86 (74%), Gaps = 21/86 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+TKVQRIMTQPINLIFRFLQS GFDEYMNLVL++AEEV +
Sbjct: 2 ATKVQRIMTQPINLIFRFLQSKSRIQIWLFEQKDMRIEGRIIGFDEYMNLVLEEAEEVSL 61
Query: 42 KKNTRKPLGRILLKGDNITLMMNTGK 67
KKNTRKPLGRILLKGDNITLMMNTGK
Sbjct: 62 KKNTRKPLGRILLKGDNITLMMNTGK 87
>gi|7269933|emb|CAB81026.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
Length = 86
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 62/86 (72%), Gaps = 21/86 (24%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVLD+AEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNT 65
IKK TRKPLGRILLKGDNITLMMN
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNA 86
>gi|168027770|ref|XP_001766402.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168048491|ref|XP_001776700.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671992|gb|EDQ58536.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682311|gb|EDQ68730.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 63/86 (73%), Gaps = 21/86 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+TKVQRIMTQPINLIFRFLQS GFDEYMNLVLD+AEEV +
Sbjct: 2 ATKVQRIMTQPINLIFRFLQSKSRIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSL 61
Query: 42 KKNTRKPLGRILLKGDNITLMMNTGK 67
KK TRKPLGRILLKGDNITLMMNTGK
Sbjct: 62 KKKTRKPLGRILLKGDNITLMMNTGK 87
>gi|217071220|gb|ACJ83970.1| unknown [Medicago truncatula]
gi|388520551|gb|AFK48337.1| unknown [Medicago truncatula]
Length = 88
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 64/88 (72%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQR+MTQPINLIFRFLQS GFDEYMNL LDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLALDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KK ++K LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 88
>gi|302765919|ref|XP_002966380.1| hypothetical protein SELMODRAFT_230895 [Selaginella
moellendorffii]
gi|302792841|ref|XP_002978186.1| hypothetical protein SELMODRAFT_176675 [Selaginella
moellendorffii]
gi|300154207|gb|EFJ20843.1| hypothetical protein SELMODRAFT_176675 [Selaginella
moellendorffii]
gi|300165800|gb|EFJ32407.1| hypothetical protein SELMODRAFT_230895 [Selaginella
moellendorffii]
Length = 88
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 64/88 (72%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MA++KVQRIMTQPINLIFRFLQS GFDEYMNLVLDDA E+
Sbjct: 1 MATSKVQRIMTQPINLIFRFLQSKATIQVWLFEQKDLRIEGRIIGFDEYMNLVLDDAYEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
+KK +RKPLGRILLKGDNITLMMNTGK
Sbjct: 61 SLKKKSRKPLGRILLKGDNITLMMNTGK 88
>gi|195615352|gb|ACG29506.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 65/88 (73%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KKNT K LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKNTPKTLGRILLKGDNITLMMNSGK 88
>gi|116779305|gb|ABK21228.1| unknown [Picea sitchensis]
Length = 88
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 64/88 (72%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MA+T+VQRIMTQPINLIFRFLQS GFDEYMNLVL+DAEE+
Sbjct: 1 MATTRVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
+K+ T KPLGRILLKGDNITLMMNTGK
Sbjct: 61 SVKRKTHKPLGRILLKGDNITLMMNTGK 88
>gi|255581898|ref|XP_002531748.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
gi|223528618|gb|EEF30637.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
Length = 86
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 63/86 (73%), Gaps = 21/86 (24%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNT 65
++KK TRK LGRILLKGDNITLMMN+
Sbjct: 61 NVKKKTRKTLGRILLKGDNITLMMNS 86
>gi|449457117|ref|XP_004146295.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 2
[Cucumis sativus]
Length = 86
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 63/86 (73%), Gaps = 21/86 (24%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNT 65
++KK ++K LGRILLKGDNITLMMN+
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNS 86
>gi|125560150|gb|EAZ05598.1| hypothetical protein OsI_27814 [Oryza sativa Indica Group]
gi|125560167|gb|EAZ05615.1| hypothetical protein OsI_27832 [Oryza sativa Indica Group]
gi|222639919|gb|EEE68051.1| hypothetical protein OsJ_26051 [Oryza sativa Japonica Group]
Length = 79
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 61/79 (77%), Gaps = 12/79 (15%)
Query: 1 MASTKVQRIMTQPINL---IFRFLQS---------GFDEYMNLVLDDAEEVHIKKNTRKP 48
MASTKVQRIMTQPI I+ F Q GFDEYMNLVLDDAEE+++KK+TRK
Sbjct: 1 MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRKS 60
Query: 49 LGRILLKGDNITLMMNTGK 67
LGRILLKGDNITLMMNTGK
Sbjct: 61 LGRILLKGDNITLMMNTGK 79
>gi|193848588|gb|ACF22772.1| small nuclear ribonucleoprotein E [Brachypodium distachyon]
Length = 79
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 61/79 (77%), Gaps = 12/79 (15%)
Query: 1 MASTKVQRIMTQPINL---IFRFLQS---------GFDEYMNLVLDDAEEVHIKKNTRKP 48
MASTKVQRIMTQPI I+ F Q GFDEYMNLVL+DAEE+++KKNTRK
Sbjct: 1 MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRKS 60
Query: 49 LGRILLKGDNITLMMNTGK 67
LGRILLKGDNITLMMNTGK
Sbjct: 61 LGRILLKGDNITLMMNTGK 79
>gi|255087330|ref|XP_002505588.1| predicted protein [Micromonas sp. RCC299]
gi|226520858|gb|ACO66846.1| predicted protein [Micromonas sp. RCC299]
Length = 87
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 61/86 (70%), Gaps = 21/86 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+TKVQRIMTQPINLIFRFLQ+ GFDEYMNLVLDDAEEV+
Sbjct: 2 ATKVQRIMTQPINLIFRFLQTKARIQIWLYENTDTVVEGRIIGFDEYMNLVLDDAEEVNK 61
Query: 42 KKNTRKPLGRILLKGDNITLMMNTGK 67
KK TRK +GRILLKGDNIT+M+NT K
Sbjct: 62 KKGTRKTVGRILLKGDNITMMVNTSK 87
>gi|384252439|gb|EIE25915.1| small nuclear ribonucleo protein E [Coccomyxa subellipsoidea
C-169]
Length = 87
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 60/86 (69%), Gaps = 21/86 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+TKV+RIMTQPINLIFRFLQS GFDEYMNLVLD+AEEV +
Sbjct: 2 ATKVKRIMTQPINLIFRFLQSRQKVQIWLYEQTDLRIEGRIIGFDEYMNLVLDEAEEVSM 61
Query: 42 KKNTRKPLGRILLKGDNITLMMNTGK 67
K+ TRK LGRILLKGDNITLM TG+
Sbjct: 62 KRKTRKALGRILLKGDNITLMQTTGR 87
>gi|257815604|gb|ACV70140.1| small nuclear ribonucleoprotein E [Jatropha curcas]
Length = 88
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 58/88 (65%), Gaps = 21/88 (23%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRI+ QPINLIFRFLQS GFDEYMN VLDDAEEV
Sbjct: 1 MASTKVQRILPQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNSVLDDAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTGK 67
++KK RK LG I KGDNI LMMN+GK
Sbjct: 61 NVKKKPRKSLGGIFFKGDNIILMMNSGK 88
>gi|159472134|ref|XP_001694206.1| small nuclear ribonucleoprotein E [Chlamydomonas reinhardtii]
gi|158276869|gb|EDP02639.1| small nuclear ribonucleoprotein E [Chlamydomonas reinhardtii]
Length = 87
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 60/86 (69%), Gaps = 21/86 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+TKVQ+IMTQPINL+FRFLQS GFDEYMNLVLD+AEEV +
Sbjct: 2 ATKVQKIMTQPINLMFRFLQSKQKVQIWLFDQADLRVEGRIIGFDEYMNLVLDEAEEVSM 61
Query: 42 KKNTRKPLGRILLKGDNITLMMNTGK 67
K+ TRK LGRILLKGDNITL+ TG+
Sbjct: 62 KRKTRKTLGRILLKGDNITLIQTTGR 87
>gi|440796303|gb|ELR17412.1| small nuclear ribonucleoprotein e, putative [Acanthamoeba
castellanii str. Neff]
Length = 90
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 58/84 (69%), Gaps = 21/84 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ+IMTQPINLIFRFLQ+ GFDEYMNLVLD+AEEV K+
Sbjct: 7 KVQKIMTQPINLIFRFLQNKSRIQIMLYENTDLRIEGRIIGFDEYMNLVLDEAEEVSTKR 66
Query: 44 NTRKPLGRILLKGDNITLMMNTGK 67
TR PLGRILLKGDNIT+M+NT K
Sbjct: 67 GTRTPLGRILLKGDNITMMLNTSK 90
>gi|116780366|gb|ABK21652.1| unknown [Picea sitchensis]
Length = 79
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 59/79 (74%), Gaps = 12/79 (15%)
Query: 1 MASTKVQRIMTQPINL---IFRFLQS---------GFDEYMNLVLDDAEEVHIKKNTRKP 48
MA+T+VQRIMTQPI I+ F Q GFDEYMNLVL+DAEE+ +K+ T KP
Sbjct: 1 MATTRVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEISVKRKTHKP 60
Query: 49 LGRILLKGDNITLMMNTGK 67
LGRILLKGDNITLMMNTGK
Sbjct: 61 LGRILLKGDNITLMMNTGK 79
>gi|333656537|gb|AEF68171.1| Sm-E-like protein [Physarum polycephalum]
Length = 90
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 59/85 (69%), Gaps = 21/85 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
KVQ+ MTQPINLIFR+LQ+ GFDEYMNLVLDDA+E+ +
Sbjct: 5 PAKVQKPMTQPINLIFRYLQNKSRIQIWLYEQNDVRIEGRIIGFDEYMNLVLDDADEIFV 64
Query: 42 KKNTRKPLGRILLKGDNITLMMNTG 66
KKNT+K LGRILLKGDNITLMMNTG
Sbjct: 65 KKNTKKHLGRILLKGDNITLMMNTG 89
>gi|156378619|ref|XP_001631239.1| predicted protein [Nematostella vectensis]
gi|156218276|gb|EDO39176.1| predicted protein [Nematostella vectensis]
Length = 91
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 57/83 (68%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLD+AEEVH+K
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSKIQIWLYEQVNMRIEGHIIGFDEYMNLVLDEAEEVHLKT 66
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
TRKPLGRIL+KGDNITL+MN
Sbjct: 67 KTRKPLGRILIKGDNITLLMNAS 89
>gi|302845652|ref|XP_002954364.1| hypothetical protein VOLCADRAFT_64746 [Volvox carteri f.
nagariensis]
gi|300260294|gb|EFJ44514.1| hypothetical protein VOLCADRAFT_64746 [Volvox carteri f.
nagariensis]
Length = 87
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 59/86 (68%), Gaps = 21/86 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+TKVQ+IMTQPINL+FRFLQS GFDEYMNLVLD+AEEV +
Sbjct: 2 ATKVQKIMTQPINLMFRFLQSKQKVQIWLYDQADLRVEGRIIGFDEYMNLVLDEAEEVSM 61
Query: 42 KKNTRKPLGRILLKGDNITLMMNTGK 67
K+ RK LGRILLKGDNITL+ TG+
Sbjct: 62 KRKNRKTLGRILLKGDNITLIQTTGR 87
>gi|156554389|ref|XP_001600882.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Nasonia vitripennis]
Length = 94
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 56/85 (65%), Gaps = 21/85 (24%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE H
Sbjct: 5 GPPKVQKVMVQPINLIFRYLQNRSRVSVWLFENINLRIEGHIVGFDEYMNLVLDDAEEYH 64
Query: 41 IKKNTRKPLGRILLKGDNITLMMNT 65
+K TRKPLGRI+LKGDNITL+ NT
Sbjct: 65 VKSKTRKPLGRIMLKGDNITLIQNT 89
>gi|302845648|ref|XP_002954362.1| hypothetical protein VOLCADRAFT_82766 [Volvox carteri f.
nagariensis]
gi|300260292|gb|EFJ44512.1| hypothetical protein VOLCADRAFT_82766 [Volvox carteri f.
nagariensis]
Length = 87
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 59/86 (68%), Gaps = 21/86 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+TK+Q+IMTQPINL+FRFLQS GFDEYMNLVLD+AEEV +
Sbjct: 2 ATKIQKIMTQPINLMFRFLQSKQKVQIWLYDQADLRIEGRIIGFDEYMNLVLDEAEEVSM 61
Query: 42 KKNTRKPLGRILLKGDNITLMMNTGK 67
K+ RK LGRILLKGDNITL+ TG+
Sbjct: 62 KRKNRKTLGRILLKGDNITLIQTTGR 87
>gi|145356609|ref|XP_001422520.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582763|gb|ABP00837.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 87
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 57/86 (66%), Gaps = 21/86 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+TKVQRIMTQPINLIFRFLQ+ GFDEYMNLVLDDAEEV
Sbjct: 2 ATKVQRIMTQPINLIFRFLQTKARVQIWMYENPDTCVEGRIVGFDEYMNLVLDDAEEVTE 61
Query: 42 KKNTRKPLGRILLKGDNITLMMNTGK 67
KK+ R +GRILLKGDNITLM N K
Sbjct: 62 KKSRRVGVGRILLKGDNITLMRNVSK 87
>gi|221119660|ref|XP_002154306.1| PREDICTED: small nuclear ribonucleoprotein E-like [Hydra
magnipapillata]
Length = 87
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 56/85 (65%), Gaps = 21/85 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDA+EVH+
Sbjct: 2 SKKVQKVMVQPINLIFRYLQNRARIQIWLYEQNNLRIEGHIIGFDEYMNLVLDDAQEVHV 61
Query: 42 KKNTRKPLGRILLKGDNITLMMNTG 66
K T+K LGRILLKGDNITL+ N
Sbjct: 62 KNKTKKQLGRILLKGDNITLIQNVA 86
>gi|380023740|ref|XP_003695670.1| PREDICTED: probable small nuclear ribonucleoprotein E-like [Apis
florea]
Length = 129
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 55/82 (67%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE H+K
Sbjct: 43 KVQKVMVQPINLIFRYLQNRSRVQVWLFENINLRIEGHIVGFDEYMNLVLDDAEEYHLKT 102
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
RKPLGRI+LKGDNITL+ NT
Sbjct: 103 KNRKPLGRIMLKGDNITLIQNT 124
>gi|328778046|ref|XP_003249437.1| PREDICTED: probable small nuclear ribonucleoprotein E-like [Apis
mellifera]
Length = 94
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 55/85 (64%), Gaps = 21/85 (24%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE H
Sbjct: 5 GPQKVQKVMVQPINLIFRYLQNRSRVQVWLFENINLRIEGHIVGFDEYMNLVLDDAEEYH 64
Query: 41 IKKNTRKPLGRILLKGDNITLMMNT 65
+K RKPLGRI+LKGDNITL+ NT
Sbjct: 65 LKTKNRKPLGRIMLKGDNITLIQNT 89
>gi|392874340|gb|AFM86002.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
gi|392875604|gb|AFM86634.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
gi|392884142|gb|AFM90903.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
Length = 92
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 21/84 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+ KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H+
Sbjct: 7 AQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHM 66
Query: 42 KKNTRKPLGRILLKGDNITLMMNT 65
K RKPLGR++LKGDNITL+ +
Sbjct: 67 KSKARKPLGRVMLKGDNITLLQSV 90
>gi|336455074|ref|NP_001229595.1| small nuclear ribonucleoprotein polypeptide E-like
[Strongylocentrotus purpuratus]
Length = 99
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMN+VLDDAEE H K
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSRVQIWLYDQSNLRIEGHIIGFDEYMNVVLDDAEEYHKKN 66
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
TRKPLGRILLKGDNITL+ N
Sbjct: 67 KTRKPLGRILLKGDNITLIQNV 88
>gi|209735714|gb|ACI68726.1| Small nuclear ribonucleoprotein E [Salmo salar]
Length = 92
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 55/83 (66%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNHSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
RKPLGRI+LKGDNITL+ +
Sbjct: 69 KNRKPLGRIMLKGDNITLLQSVA 91
>gi|391347407|ref|XP_003747954.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Metaseiulus occidentalis]
Length = 90
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 58/85 (68%), Gaps = 21/85 (24%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
+TKVQ++M QPINLIFR+LQ+ GFDEYMNLVLD+AEEV+
Sbjct: 4 GNTKVQKVMVQPINLIFRYLQNRAKIQVWLYENTSLRIEGYIIGFDEYMNLVLDEAEEVY 63
Query: 41 IKKNTRKPLGRILLKGDNITLMMNT 65
+K RK +GRILLKG+NITL+MNT
Sbjct: 64 VKTGHRKTIGRILLKGENITLLMNT 88
>gi|213514566|ref|NP_001134166.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|209731160|gb|ACI66449.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|209731914|gb|ACI66826.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|221222246|gb|ACM09784.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223646154|gb|ACN09835.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223646558|gb|ACN10037.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223647280|gb|ACN10398.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223672001|gb|ACN12182.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223672405|gb|ACN12384.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223673159|gb|ACN12761.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|225715976|gb|ACO13834.1| Small nuclear ribonucleoprotein E [Esox lucius]
gi|303663497|gb|ADM16108.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|303666767|gb|ADM16243.1| Small nuclear ribonucleoprotein E [Salmo salar]
Length = 92
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 55/83 (66%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
RKPLGRI+LKGDNITL+ +
Sbjct: 69 KNRKPLGRIMLKGDNITLLQSVA 91
>gi|291235504|ref|XP_002737683.1| PREDICTED: small nuclear ribonucleoprotein polypeptide E-like
[Saccoglossus kowalevskii]
Length = 92
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQS GFDEYMNLVLDDAEE H+K
Sbjct: 7 KVQKVMVQPINLIFRYLQSRSRIQVWLYEQVNMRIEGHIIGFDEYMNLVLDDAEEYHMKS 66
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
TRK LGR++LKGDNITL+ N
Sbjct: 67 KTRKTLGRVMLKGDNITLIQNV 88
>gi|41055945|ref|NP_957298.1| small nuclear ribonucleoprotein E [Danio rerio]
gi|54039591|sp|Q7ZUG0.1|RUXE_DANRE RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|29124607|gb|AAH49062.1| Small nuclear ribonucleoprotein polypeptide E [Danio rerio]
Length = 92
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 54/79 (68%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 44 NTRKPLGRILLKGDNITLM 62
RKPLGRI+LKGDNITL+
Sbjct: 69 KNRKPLGRIMLKGDNITLL 87
>gi|317418569|emb|CBN80607.1| Small nuclear ribonucleoprotein E [Dicentrarchus labrax]
Length = 92
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 55/82 (67%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
RKPLGRI+LKGDNITL+ +
Sbjct: 69 KNRKPLGRIMLKGDNITLLQSV 90
>gi|307105606|gb|EFN53854.1| hypothetical protein CHLNCDRAFT_36210 [Chlorella variabilis]
Length = 86
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 54/79 (68%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KV+RIMTQPINLIFRFLQS GFDEYMNLVLD+AEEV +K+
Sbjct: 4 KVKRIMTQPINLIFRFLQSRQKIQIWLYEHNDLRIEGRIIGFDEYMNLVLDEAEEVSVKR 63
Query: 44 NTRKPLGRILLKGDNITLM 62
TRK LGRILLKGD ITLM
Sbjct: 64 KTRKALGRILLKGDTITLM 82
>gi|260788526|ref|XP_002589300.1| hypothetical protein BRAFLDRAFT_268096 [Branchiostoma floridae]
gi|229274477|gb|EEN45311.1| hypothetical protein BRAFLDRAFT_268096 [Branchiostoma floridae]
Length = 90
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 55/82 (67%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H+K
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSRIQIWLYEQTNMRIEGHIIGFDEYMNLVLDDAEEIHLKT 66
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
RKPLGRILLKGDNITL+ +
Sbjct: 67 KNRKPLGRILLKGDNITLIQSV 88
>gi|348510586|ref|XP_003442826.1| PREDICTED: small nuclear ribonucleoprotein E-like [Oreochromis
niloticus]
Length = 92
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 54/79 (68%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 44 NTRKPLGRILLKGDNITLM 62
RKPLGRI+LKGDNITL+
Sbjct: 69 KNRKPLGRIMLKGDNITLL 87
>gi|318820229|ref|NP_001187846.1| small nuclear ribonucleoprotein e [Ictalurus punctatus]
gi|308324130|gb|ADO29200.1| small nuclear ribonucleoprotein e [Ictalurus punctatus]
Length = 92
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 55/83 (66%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQINMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
RKPLGR++LKGDNITL+ +
Sbjct: 69 KNRKPLGRVMLKGDNITLLQSVS 91
>gi|308322451|gb|ADO28363.1| small nuclear ribonucleoprotein e [Ictalurus furcatus]
Length = 92
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 55/82 (67%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQINMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
RKPLGR++LKGDNITL+ +
Sbjct: 69 KNRKPLGRVMLKGDNITLLQSV 90
>gi|428163538|gb|EKX32604.1| small nuclear ribonucleoprotein-like protein [Guillardia theta
CCMP2712]
Length = 91
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 54/80 (67%), Gaps = 21/80 (26%)
Query: 4 TKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIK 42
+K Q+ MTQPINLIFRFLQ+ GFDEYMNLVLD+AEE H K
Sbjct: 2 SKQQKTMTQPINLIFRFLQNKSRIQIWLYENADLRIEGQIIGFDEYMNLVLDNAEEYHKK 61
Query: 43 KNTRKPLGRILLKGDNITLM 62
K TRKPLGRILLKG+NITLM
Sbjct: 62 KGTRKPLGRILLKGENITLM 81
>gi|432859400|ref|XP_004069089.1| PREDICTED: small nuclear ribonucleoprotein E-like [Oryzias
latipes]
Length = 92
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 54/79 (68%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 44 NTRKPLGRILLKGDNITLM 62
RKPLGR++LKGDNITL+
Sbjct: 69 KNRKPLGRVMLKGDNITLL 87
>gi|387914532|gb|AFK10875.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
Length = 92
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 21/84 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+ KVQ+++ QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H+
Sbjct: 7 AQKVQKVLVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHM 66
Query: 42 KKNTRKPLGRILLKGDNITLMMNT 65
K RKPLGR++LKGDNITL+ +
Sbjct: 67 KSKARKPLGRVMLKGDNITLLQSV 90
>gi|325181229|emb|CCA15643.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 627
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 57/85 (67%), Gaps = 21/85 (24%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
+ ST+VQ+ MTQPINL+FRFLQ+ GFDEYMN+VLD+AEEV
Sbjct: 536 IMSTRVQKPMTQPINLMFRFLQNKARVQIWLYEQTQTRIEGRIMGFDEYMNIVLDEAEEV 595
Query: 40 HIKKNTRKPLGRILLKGDNITLMMN 64
+KK R PLGRILLKGD ITLMM+
Sbjct: 596 DVKKAKRAPLGRILLKGDTITLMMS 620
>gi|401398344|ref|XP_003880279.1| hypothetical protein NCLIV_007180 [Neospora caninum Liverpool]
gi|325114689|emb|CBZ50244.1| hypothetical protein NCLIV_007180 [Neospora caninum Liverpool]
Length = 91
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 58/86 (67%), Gaps = 21/86 (24%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M++ K+Q+IMTQPINLIFRF GFDEYMN+VLDDAEEV
Sbjct: 6 MSNKKLQKIMTQPINLIFRFFTQRMRVQIWLYEQPDMRIEGRIMGFDEYMNMVLDDAEEV 65
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNT 65
++KK TR P+GRILLKG+N+TL+M T
Sbjct: 66 YLKKRTRIPVGRILLKGENVTLIMAT 91
>gi|325181839|emb|CCA16294.1| small nuclear ribonucleoprotein homolog putative [Albugo
laibachii Nc14]
Length = 91
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 56/83 (67%), Gaps = 21/83 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
ST+VQ+ MTQPINL+FRFLQ+ GFDEYMN+VLD+AEEV +
Sbjct: 2 STRVQKPMTQPINLMFRFLQNKARVQIWLYEQTQTRIEGRIMGFDEYMNIVLDEAEEVDV 61
Query: 42 KKNTRKPLGRILLKGDNITLMMN 64
KK R PLGRILLKGD ITLMM+
Sbjct: 62 KKAKRAPLGRILLKGDTITLMMS 84
>gi|321471723|gb|EFX82695.1| hypothetical protein DAPPUDRAFT_195506 [Daphnia pulex]
Length = 94
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 21/85 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+ KVQ++M QPINLIFR+LQ+ GFDEYMN+VLDDAEEV++
Sbjct: 5 APKVQKVMVQPINLIFRYLQTRSRVDIWLYENINMHMEGHIVGFDEYMNIVLDDAEEVYV 64
Query: 42 KKNTRKPLGRILLKGDNITLMMNTG 66
K N RK +GR+LLKGDNITL+ N
Sbjct: 65 KTNVRKQIGRVLLKGDNITLIQNAA 89
>gi|237844609|ref|XP_002371602.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
ME49]
gi|211969266|gb|EEB04462.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
ME49]
gi|221482996|gb|EEE21320.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
GT1]
gi|221503930|gb|EEE29607.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
VEG]
Length = 91
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 58/86 (67%), Gaps = 21/86 (24%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M++ K+Q+IMTQPINLIFRF GFDEYMN+VLDDAEEV
Sbjct: 6 MSNKKLQKIMTQPINLIFRFFTQRMRVQIWLYEQPDMRIEGRIMGFDEYMNMVLDDAEEV 65
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNT 65
++KK TR P+GRILLKG+N+TL+M T
Sbjct: 66 YLKKRTRIPVGRILLKGENVTLIMAT 91
>gi|47227397|emb|CAF96946.1| unnamed protein product [Tetraodon nigroviridis]
Length = 92
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 54/79 (68%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHMKT 68
Query: 44 NTRKPLGRILLKGDNITLM 62
RKPLGR++LKGDNITL+
Sbjct: 69 KNRKPLGRVMLKGDNITLL 87
>gi|147904965|ref|NP_001085500.1| MGC80249 protein [Xenopus laevis]
gi|49119142|gb|AAH72854.1| MGC80249 protein [Xenopus laevis]
Length = 93
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 56/85 (65%), Gaps = 21/85 (24%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDD+EE+H
Sbjct: 7 GGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDSEEIH 66
Query: 41 IKKNTRKPLGRILLKGDNITLMMNT 65
+K +RKP+GRI+LKGDNITL+ +
Sbjct: 67 LKTKSRKPIGRIMLKGDNITLLQSV 91
>gi|307213117|gb|EFN88639.1| Probable small nuclear ribonucleoprotein E [Harpegnathos saltator]
Length = 295
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE + K
Sbjct: 209 KVQKVMVQPINLIFRYLQNRSRVQVWLFENVNLRIEGHIVGFDEYMNLVLDDAEEYYQKT 268
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
RKPLGRI+LKGDNITL+ NT
Sbjct: 269 KVRKPLGRIMLKGDNITLIQNT 290
>gi|340720323|ref|XP_003398590.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Bombus terrestris]
gi|350408777|ref|XP_003488510.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Bombus impatiens]
Length = 94
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 55/85 (64%), Gaps = 21/85 (24%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE +
Sbjct: 5 GPQKVQKVMVQPINLIFRYLQNRSRVQVWLFENINLRIEGHIVGFDEYMNLVLDDAEEYN 64
Query: 41 IKKNTRKPLGRILLKGDNITLMMNT 65
+K RKPLGRI+LKGDNITL+ NT
Sbjct: 65 LKTKARKPLGRIMLKGDNITLIQNT 89
>gi|294952865|ref|XP_002787488.1| Small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239902490|gb|EER19284.1| Small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 93
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 56/83 (67%), Gaps = 21/83 (25%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+ K+Q+IMT PINLIFR+L GFDEYMN+VLDDAEEV
Sbjct: 2 MSKRKLQKIMTMPINLIFRYLTEKTRIVVWLYDHKDLRMEGVILGFDEYMNVVLDDAEEV 61
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
+ KK+TR+P+GRILLKGDNITLM
Sbjct: 62 NTKKDTRRPVGRILLKGDNITLM 84
>gi|198417167|ref|XP_002127833.1| PREDICTED: similar to small nuclear ribonucleoprotein E [Ciona
intestinalis]
Length = 96
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 55/79 (69%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEV+IKK
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSRVSIWVYEQVNMRIEGHIVGFDEYMNLVLDDAEEVNIKK 66
Query: 44 NTRKPLGRILLKGDNITLM 62
N RK LGR++LKGDNIT++
Sbjct: 67 NVRKTLGRVMLKGDNITVI 85
>gi|410920641|ref|XP_003973792.1| PREDICTED: small nuclear ribonucleoprotein E-like [Takifugu
rubripes]
gi|410920643|ref|XP_003973793.1| PREDICTED: small nuclear ribonucleoprotein E-like [Takifugu
rubripes]
Length = 92
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 54/79 (68%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDD+EE+H+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDSEEIHMKT 68
Query: 44 NTRKPLGRILLKGDNITLM 62
RKPLGR++LKGDNITL+
Sbjct: 69 KNRKPLGRVMLKGDNITLL 87
>gi|390176608|ref|XP_003736146.1| GA15004 [Drosophila pseudoobscura pseudoobscura]
gi|388858695|gb|EIM52219.1| GA15004 [Drosophila pseudoobscura pseudoobscura]
Length = 94
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 56/86 (65%), Gaps = 21/86 (24%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
++ KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEV+
Sbjct: 5 SNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVY 64
Query: 41 IKKNTRKPLGRILLKGDNITLMMNTG 66
+K RK LGRI+LKGDNITL+ N
Sbjct: 65 VKTRQRKSLGRIMLKGDNITLIQNVS 90
>gi|414875727|tpg|DAA52858.1| TPA: hypothetical protein ZEAMMB73_852117, partial [Zea mays]
Length = 177
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 52/74 (70%), Gaps = 21/74 (28%)
Query: 15 NLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKPLGRIL 53
NLIFRFLQS GFDEYMNLVL+DAEE+++KKNTRK LGRIL
Sbjct: 104 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRKTLGRIL 163
Query: 54 LKGDNITLMMNTGK 67
LKGDNITLMMN+GK
Sbjct: 164 LKGDNITLMMNSGK 177
>gi|357631258|gb|EHJ78848.1| hypothetical protein KGM_10301 [Danaus plexippus]
Length = 463
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 21/81 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMN+VLD+AEEVH+K
Sbjct: 8 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKT 67
Query: 44 NTRKPLGRILLKGDNITLMMN 64
RK +GRI++KGDNITL+ N
Sbjct: 68 KNRKQIGRIMMKGDNITLIQN 88
>gi|52346208|ref|NP_001005147.1| small nuclear ribonucleoprotein polypeptide E [Xenopus (Silurana)
tropicalis]
gi|50603823|gb|AAH77697.1| MGC89991 protein [Xenopus (Silurana) tropicalis]
gi|89268183|emb|CAJ83657.1| small nuclear ribonucleoprotein polypeptide E [Xenopus (Silurana)
tropicalis]
gi|166796482|gb|AAI59376.1| MGC89991 protein [Xenopus (Silurana) tropicalis]
Length = 92
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 55/82 (67%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHLKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|294956367|ref|XP_002788910.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239904570|gb|EER20706.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 94
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 56/83 (67%), Gaps = 21/83 (25%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+ K+Q+IMT PINLIFR+L GFDEYMN+VLDDAEEV
Sbjct: 2 MSKRKLQKIMTMPINLIFRYLTEKTRIVVWLYDHKDLRMEGVILGFDEYMNVVLDDAEEV 61
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
+ KK+TR+P+GRILLKGDNITLM
Sbjct: 62 NTKKDTRRPVGRILLKGDNITLM 84
>gi|332222659|ref|XP_003260491.1| PREDICTED: small nuclear ribonucleoprotein E-like [Nomascus
leucogenys]
Length = 92
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ+IM QPINLIFR+LQS GFDEYMNLVLD+AEE+H K
Sbjct: 9 KVQKIMVQPINLIFRYLQSRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDEAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|145329170|ref|NP_001077914.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|330251707|gb|AEC06801.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
Length = 78
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 49/71 (69%), Gaps = 21/71 (29%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVLD+AEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Query: 40 HIKKNTRKPLG 50
IKKNTRKPLG
Sbjct: 61 SIKKNTRKPLG 71
>gi|147903209|ref|NP_001090934.1| small nuclear ribonucleoprotein E [Sus scrofa]
gi|166233313|sp|A1XQR9.1|RUXE_PIG RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|117660533|gb|ABK55625.1| SNRPE [Sus scrofa]
gi|117660560|gb|ABK55626.1| NDUFB2 [Sus scrofa]
Length = 92
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 21/85 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+ KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H
Sbjct: 7 AQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 42 KKNTRKPLGRILLKGDNITLMMNTG 66
K +RK LGRI+LKGDNITL+ +
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|118781504|ref|XP_311506.3| AGAP010440-PA [Anopheles gambiae str. PEST]
gi|116129981|gb|EAA07131.3| AGAP010440-PA [Anopheles gambiae str. PEST]
Length = 90
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 56/84 (66%), Gaps = 21/84 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+KVQ++M QPINLIFR+LQ+ GFDEYMNLVLD+AEE +I
Sbjct: 5 GSKVQKVMVQPINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAEEFNI 64
Query: 42 KKNTRKPLGRILLKGDNITLMMNT 65
KK TR+ LGRI+LKGDNITL+ N
Sbjct: 65 KKQTRRQLGRIMLKGDNITLIQNV 88
>gi|74747670|sp|Q5VYJ4.1|RUEL1_HUMAN RecName: Full=Putative small nuclear ribonucleoprotein
polypeptide E-like protein 1
Length = 92
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|297459953|ref|XP_002700818.1| PREDICTED: uncharacterized protein LOC100296197 [Bos taurus]
Length = 182
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 54/83 (65%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNL+LDDAEE+H K
Sbjct: 99 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHSKT 158
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
+RK LGRI+LKGDNITL+ +
Sbjct: 159 KSRKQLGRIMLKGDNITLLQSVS 181
>gi|55632867|ref|XP_520443.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan troglodytes]
Length = 92
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|395734016|ref|XP_003776336.1| PREDICTED: small nuclear ribonucleoprotein E-like [Pongo abelii]
Length = 92
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 53/79 (67%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEVH K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIVGFDEYMNLVLDDAEEVHSKT 68
Query: 44 NTRKPLGRILLKGDNITLM 62
+RK LGRI+LKGDNITL+
Sbjct: 69 KSRKQLGRIMLKGDNITLL 87
>gi|296230202|ref|XP_002760604.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 92
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSWIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|148226114|ref|NP_001085570.1| small nuclear ribonucleoprotein polypeptide E [Xenopus laevis]
gi|49256559|gb|AAH72956.1| MGC82471 protein [Xenopus laevis]
Length = 92
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 55/82 (67%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMN+VLDDAEE+H+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRVQVWLYEQVNMRIEGCIIGFDEYMNIVLDDAEEIHLKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|301783571|ref|XP_002927201.1| PREDICTED: small nuclear ribonucleoprotein E-like [Ailuropoda
melanoleuca]
Length = 98
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 53/79 (67%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 15 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 74
Query: 44 NTRKPLGRILLKGDNITLM 62
+RK LGRI+LKGDNITL+
Sbjct: 75 KSRKQLGRIMLKGDNITLL 93
>gi|109514130|ref|XP_001065908.1| PREDICTED: small nuclear ribonucleoprotein E [Rattus norvegicus]
Length = 92
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNIRIKGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|301765636|ref|XP_002918237.1| PREDICTED: small nuclear ribonucleoprotein E-like [Ailuropoda
melanoleuca]
Length = 92
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRKEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|109484106|ref|XP_001064438.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|293349553|ref|XP_002727191.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|387018116|gb|AFJ51176.1| Small nuclear ribonucleoprotein E [Crotalus adamanteus]
Length = 92
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|293356012|ref|XP_002728814.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|392337758|ref|XP_003753347.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|157128750|ref|XP_001661504.1| SM protein G, putative [Aedes aegypti]
gi|108872482|gb|EAT36707.1| AAEL011233-PA [Aedes aegypti]
Length = 91
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 55/84 (65%), Gaps = 21/84 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+KVQ++M QPINLIFR+LQ+ GFDEYMNLVLD+AEE +
Sbjct: 5 GSKVQKVMVQPINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAEEYNT 64
Query: 42 KKNTRKPLGRILLKGDNITLMMNT 65
KK R+PLGRI+LKGDNITL+ N
Sbjct: 65 KKQNRRPLGRIMLKGDNITLIQNV 88
>gi|4507129|ref|NP_003085.1| small nuclear ribonucleoprotein E [Homo sapiens]
gi|27883844|ref|NP_033253.1| small nuclear ribonucleoprotein E [Mus musculus]
gi|45382605|ref|NP_990581.1| small nuclear ribonucleoprotein E [Gallus gallus]
gi|134085710|ref|NP_001076928.1| small nuclear ribonucleoprotein E [Bos taurus]
gi|388490108|ref|NP_001253704.1| small nuclear ribonucleoprotein E [Macaca mulatta]
gi|403420626|ref|NP_001258166.1| small nuclear ribonucleoprotein polypeptide E [Rattus norvegicus]
gi|114572016|ref|XP_001158544.1| PREDICTED: small nuclear ribonucleoprotein E isoform 3 [Pan
troglodytes]
gi|126306697|ref|XP_001364976.1| PREDICTED: small nuclear ribonucleoprotein E-like [Monodelphis
domestica]
gi|291402573|ref|XP_002717622.1| PREDICTED: small nuclear ribonucleoprotein polypeptide E
[Oryctolagus cuniculus]
gi|297662243|ref|XP_002809621.1| PREDICTED: small nuclear ribonucleoprotein E [Pongo abelii]
gi|327271183|ref|XP_003220367.1| PREDICTED: small nuclear ribonucleoprotein E-like [Anolis
carolinensis]
gi|344277002|ref|XP_003410294.1| PREDICTED: small nuclear ribonucleoprotein E-like [Loxodonta
africana]
gi|348578175|ref|XP_003474859.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
gi|354487267|ref|XP_003505795.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cricetulus
griseus]
gi|359324001|ref|XP_003640259.1| PREDICTED: small nuclear ribonucleoprotein E-like [Canis lupus
familiaris]
gi|397479845|ref|XP_003811214.1| PREDICTED: small nuclear ribonucleoprotein E-like [Pan paniscus]
gi|397504925|ref|XP_003823029.1| PREDICTED: small nuclear ribonucleoprotein E [Pan paniscus]
gi|402857535|ref|XP_003893308.1| PREDICTED: small nuclear ribonucleoprotein E [Papio anubis]
gi|402858753|ref|XP_003893852.1| PREDICTED: small nuclear ribonucleoprotein E-like [Papio anubis]
gi|403261763|ref|XP_003923280.1| PREDICTED: small nuclear ribonucleoprotein E-like [Saimiri
boliviensis boliviensis]
gi|403294819|ref|XP_003938362.1| PREDICTED: small nuclear ribonucleoprotein E [Saimiri boliviensis
boliviensis]
gi|410986283|ref|XP_003999440.1| PREDICTED: small nuclear ribonucleoprotein E [Felis catus]
gi|426239377|ref|XP_004013598.1| PREDICTED: small nuclear ribonucleoprotein E [Ovis aries]
gi|426333365|ref|XP_004028248.1| PREDICTED: small nuclear ribonucleoprotein E-like [Gorilla
gorilla gorilla]
gi|55977309|sp|P62305.1|RUXE_MOUSE RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|61237380|sp|P62304.1|RUXE_HUMAN RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|78102504|sp|P62303.1|RUXE_CHICK RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|190360254|sp|A4FUI2.1|RUXE_BOVIN RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|225734045|pdb|3CW1|E Chain E, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734054|pdb|3CW1|W Chain W, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734063|pdb|3CW1|X Chain X, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734072|pdb|3CW1|Y Chain Y, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583605|pdb|3PGW|E Chain E, Crystal Structure Of Human U1 Snrnp
gi|315583614|pdb|3PGW|H Chain H, Crystal Structure Of Human U1 Snrnp
gi|332639437|pdb|2Y9A|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639444|pdb|2Y9A|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639451|pdb|2Y9A|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639461|pdb|2Y9B|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639468|pdb|2Y9B|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639475|pdb|2Y9B|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639485|pdb|2Y9C|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639492|pdb|2Y9C|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639499|pdb|2Y9C|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639509|pdb|2Y9D|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639516|pdb|2Y9D|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639523|pdb|2Y9D|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781212|pdb|3S6N|E Chain E, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302200|pdb|4F7U|E Chain E, Macromolecular Machine 6
gi|444302201|pdb|4F7U|H Chain H, Macromolecular Machine 6
gi|453055424|pdb|1VU2|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453055432|pdb|1VU2|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453055440|pdb|1VU2|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453055448|pdb|1VU2|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453055456|pdb|1VU2|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453055464|pdb|1VU2|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453055476|pdb|1VU2|YY Chain y, The 8s Snrnp Assembly Intermediate
gi|453055480|pdb|1VU3|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453055488|pdb|1VU3|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453055496|pdb|1VU3|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453055504|pdb|1VU3|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453055512|pdb|1VU3|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453055520|pdb|1VU3|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453056012|pdb|4F77|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453056020|pdb|4F77|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453056028|pdb|4F77|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453056036|pdb|4F77|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453056044|pdb|4F77|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453056052|pdb|4F77|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453056064|pdb|4F77|YY Chain y, The 8s Snrnp Assembly Intermediate
gi|35105|emb|CAA31007.1| unnamed protein product [Homo sapiens]
gi|304425|gb|AAA49073.1| small nuclear ribonucleoprotein E [Gallus gallus]
gi|312002|emb|CAA46624.1| SmE protein [Gallus gallus]
gi|338267|gb|AAA90926.1| small nuclear RNA protein (snRNP E) [Homo sapiens]
gi|12803609|gb|AAH02639.1| Small nuclear ribonucleoprotein polypeptide E [Homo sapiens]
gi|12859681|dbj|BAB31734.1| unnamed protein product [Mus musculus]
gi|14198403|gb|AAH08262.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|33585911|gb|AAH55765.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|56078667|gb|AAH51207.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|60688403|gb|AAH90951.1| Small nuclear ribonucleoprotein polypeptide E [Homo sapiens]
gi|119611900|gb|EAW91494.1| small nuclear ribonucleoprotein polypeptide E, isoform CRA_a
[Homo sapiens]
gi|133777545|gb|AAI14916.1| SNRPE protein [Bos taurus]
gi|149058608|gb|EDM09765.1| rCG46024, isoform CRA_a [Rattus norvegicus]
gi|189053260|dbj|BAG35066.1| unnamed protein product [Homo sapiens]
gi|208967438|dbj|BAG73733.1| small nuclear ribonucleoprotein polypeptide E [synthetic
construct]
gi|296479386|tpg|DAA21501.1| TPA: small nuclear ribonucleoprotein E [Bos taurus]
gi|344246138|gb|EGW02242.1| Small nuclear ribonucleoprotein E [Cricetulus griseus]
gi|355558873|gb|EHH15653.1| hypothetical protein EGK_01772 [Macaca mulatta]
gi|355746009|gb|EHH50634.1| hypothetical protein EGM_01497 [Macaca fascicularis]
gi|387542988|gb|AFJ72121.1| small nuclear ribonucleoprotein E [Macaca mulatta]
gi|410355685|gb|JAA44446.1| small nuclear ribonucleoprotein polypeptide E [Pan troglodytes]
gi|417395589|gb|JAA44847.1| Putative small nuclear ribonucleoprotein e [Desmodus rotundus]
Length = 92
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|351707608|gb|EHB10527.1| Small nuclear ribonucleoprotein E [Heterocephalus glaber]
Length = 92
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNVRKIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|405971206|gb|EKC36056.1| Small nuclear ribonucleoprotein E [Crassostrea gigas]
Length = 90
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 53/82 (64%), Gaps = 21/82 (25%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLD+AEEVH
Sbjct: 5 GGQKVQKVMVQPINLIFRYLQNRSRISVWLYEQTNLRIEGCIVGFDEYMNLVLDEAEEVH 64
Query: 41 IKKNTRKPLGRILLKGDNITLM 62
+K RK LGRILLKGDNITL+
Sbjct: 65 MKTKNRKTLGRILLKGDNITLI 86
>gi|281354337|gb|EFB29921.1| hypothetical protein PANDA_016960 [Ailuropoda melanoleuca]
Length = 92
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 53/79 (67%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLM 62
+RK LGRI+LKGDNITL+
Sbjct: 69 KSRKQLGRIMLKGDNITLL 87
>gi|348553541|ref|XP_003462585.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 93
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 53/79 (67%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNL+LDDAEE+H K
Sbjct: 10 KVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMRTEGCIIGFDEYMNLILDDAEEIHSKT 69
Query: 44 NTRKPLGRILLKGDNITLM 62
+RK LGRI+LKGDNITL+
Sbjct: 70 KSRKQLGRIMLKGDNITLL 88
>gi|148707696|gb|EDL39643.1| small nuclear ribonucleoprotein E, isoform CRA_a [Mus musculus]
Length = 105
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 22 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 81
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 82 KSRKQLGRIMLKGDNITLLQSV 103
>gi|342905932|gb|AEL79249.1| small nuclear ribonucleoprotein E [Rhodnius prolixus]
gi|342905938|gb|AEL79252.1| small nuclear ribonucleoprotein E [Rhodnius prolixus]
Length = 97
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE +IK
Sbjct: 8 KVQKVMVQPINLIFRYLQNRSRVCVWLYENINLRIEGHIVGFDEYMNLVLDDAEEYNIKT 67
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
R+PLGRI++KGDNITL+ N
Sbjct: 68 KNRRPLGRIMMKGDNITLIQNV 89
>gi|149408455|ref|XP_001513314.1| PREDICTED: small nuclear ribonucleoprotein E-like
[Ornithorhynchus anatinus]
Length = 92
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGR++LKGDNITL+ +
Sbjct: 69 KSRKQLGRVMLKGDNITLLQSV 90
>gi|440911215|gb|ELR60916.1| Small nuclear ribonucleoprotein E, partial [Bos grunniens mutus]
Length = 91
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNL+LDDAEE+H K
Sbjct: 8 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHSKT 67
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 68 KSRKQLGRIMLKGDNITLLQSV 89
>gi|170065245|ref|XP_001867860.1| small nuclear ribonucleoprotein E [Culex quinquefasciatus]
gi|167882312|gb|EDS45695.1| small nuclear ribonucleoprotein E [Culex quinquefasciatus]
Length = 91
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 55/84 (65%), Gaps = 21/84 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+KVQ++M QPINLIFR+LQ+ GFDEYMNLVLD+AEE +I
Sbjct: 5 GSKVQKVMVQPINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAEEYNI 64
Query: 42 KKNTRKPLGRILLKGDNITLMMNT 65
KK R+ LGRI+LKGDNITL+ N
Sbjct: 65 KKQNRRTLGRIMLKGDNITLIQNV 88
>gi|346471229|gb|AEO35459.1| hypothetical protein [Amblyomma maculatum]
Length = 94
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 55/82 (67%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE++ K
Sbjct: 10 KVQKVMVQPINLIFRYLQNRARIQVWLYENVALRIEGHIIGFDEYMNLVLDDAEEIYTKT 69
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
RK +GRILLKG+NITL+M+T
Sbjct: 70 KQRKQVGRILLKGENITLIMST 91
>gi|389612857|dbj|BAM19829.1| small ribonucleoprotein particle protein SmE [Papilio xuthus]
Length = 95
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 54/85 (63%), Gaps = 21/85 (24%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
KVQ++M QPINLIFR+LQ+ GFDEYMN+VLDDAEEVH
Sbjct: 5 GPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDDAEEVH 64
Query: 41 IKKNTRKPLGRILLKGDNITLMMNT 65
+K RK +GRI++KGDNITL+ N
Sbjct: 65 MKTKNRKQIGRIMMKGDNITLIQNV 89
>gi|241838714|ref|XP_002415212.1| small nuclear ribonucleoprotein E, putative [Ixodes scapularis]
gi|215509424|gb|EEC18877.1| small nuclear ribonucleoprotein E, putative [Ixodes scapularis]
Length = 94
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 55/82 (67%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE++ K
Sbjct: 10 KVQKVMVQPINLIFRYLQNRARIQVWLYENVILRIEGHIIGFDEYMNLVLDDAEEIYTKT 69
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
RK +GRILLKG+NITL+M+T
Sbjct: 70 KQRKQVGRILLKGENITLIMST 91
>gi|24582631|ref|NP_609162.1| small ribonucleoprotein particle protein SmE [Drosophila
melanogaster]
gi|29428063|sp|Q9VLV5.1|RUXE_DROME RecName: Full=Probable small nuclear ribonucleoprotein E;
Short=snRNP-E; AltName: Full=Sm protein E; Short=Sm-E;
Short=SmE
gi|7297315|gb|AAF52576.1| small ribonucleoprotein particle protein SmE [Drosophila
melanogaster]
gi|28317182|gb|AAO39600.1| GM19936p [Drosophila melanogaster]
gi|220947662|gb|ACL86374.1| CG18591-PA [synthetic construct]
gi|220956962|gb|ACL91024.1| CG18591-PA [synthetic construct]
Length = 94
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 55/86 (63%), Gaps = 21/86 (24%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
+ KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEV+
Sbjct: 5 GNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVY 64
Query: 41 IKKNTRKPLGRILLKGDNITLMMNTG 66
+K R+ LGRI+LKGDNITL+ N
Sbjct: 65 VKTRQRRNLGRIMLKGDNITLIQNVS 90
>gi|383413025|gb|AFH29726.1| small nuclear ribonucleoprotein E [Macaca mulatta]
Length = 92
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ+++ QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVVVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|348569444|ref|XP_003470508.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 54/85 (63%), Gaps = 21/85 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+ KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H
Sbjct: 7 TQKVQKVMVQPINLIFRYLQNSSRIQVWLYEQVNMHIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 42 KKNTRKPLGRILLKGDNITLMMNTG 66
K +RK LG I+LKGDNITL+ +
Sbjct: 67 KTKSRKQLGWIMLKGDNITLLQSVS 91
>gi|443693014|gb|ELT94478.1| hypothetical protein CAPTEDRAFT_158302 [Capitella teleta]
gi|443707581|gb|ELU03095.1| hypothetical protein CAPTEDRAFT_101766 [Capitella teleta]
Length = 92
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
A KVQ++M QPINLIFR+LQ+ GFDEYMNLVLD+AEEV+
Sbjct: 5 AGGKVQKVMVQPINLIFRYLQNRSRIQVWLYEQCNMRIEGCIIGFDEYMNLVLDEAEEVN 64
Query: 41 IKKNTRKPLGRILLKGDNITLM 62
IK RK LGRIL+KGDNITL+
Sbjct: 65 IKTKNRKNLGRILMKGDNITLI 86
>gi|297480322|ref|XP_002707759.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC100296197 [Bos taurus]
gi|296482627|tpg|DAA24742.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 182
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 53/83 (63%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M PINLIFR+LQ+ GFDEYMNL+LDDAEE+H K
Sbjct: 99 KVQKVMVXPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHSKT 158
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
+RK LGRI+LKGDNITL+ +
Sbjct: 159 KSRKQLGRIMLKGDNITLLQSVS 181
>gi|328768113|gb|EGF78160.1| hypothetical protein BATDEDRAFT_90820 [Batrachochytrium
dendrobatidis JAM81]
Length = 91
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 51/84 (60%), Gaps = 21/84 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+TK+Q+IM QPINLIFR LQ GFDE+MNLVLDDAEEV
Sbjct: 2 ATKLQKIMVQPINLIFRMLQQKSRVQIWLYEQTEIRIEGQILGFDEFMNLVLDDAEEVST 61
Query: 42 KKNTRKPLGRILLKGDNITLMMNT 65
K RK LGRILLKGDNITL N
Sbjct: 62 KTGARKQLGRILLKGDNITLFCNA 85
>gi|397505808|ref|XP_003823438.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan paniscus]
Length = 92
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 53/82 (64%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEPVNMQIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNI L+ +
Sbjct: 69 KSRKQLGRIMLKGDNINLLQSV 90
>gi|114051397|ref|NP_001040370.1| small nuclear ribonucleoprotein E [Bombyx mori]
gi|95102658|gb|ABF51267.1| small nuclear ribonucleoprotein E [Bombyx mori]
Length = 95
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 54/85 (63%), Gaps = 21/85 (24%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
KVQ++M QPINLIFR+LQ+ GFDEYMN+VLD+AEEVH
Sbjct: 5 GPPKVQKVMVQPINLIFRYLQNRSRVQIGLYENVNLRIEGHIVGFDEYMNMVLDEAEEVH 64
Query: 41 IKKNTRKPLGRILLKGDNITLMMNT 65
+K RK +GRI++KGDNITL+ N
Sbjct: 65 MKSKNRKQIGRIMMKGDNITLIQNV 89
>gi|297469885|ref|XP_002707307.1| PREDICTED: small nuclear ribonucleoprotein E [Bos taurus]
gi|297492936|ref|XP_002699974.1| PREDICTED: small nuclear ribonucleoprotein E [Bos taurus]
gi|296470897|tpg|DAA13012.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 164
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 53/83 (63%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEY NLVLDDAEE+H K
Sbjct: 81 KVQKVMVQPINLIFRYLQNRSHIQVWLYEQVNMRIEGCIIGFDEYRNLVLDDAEEIHSKT 140
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
+RK LGRI+LKGDNITL+ +
Sbjct: 141 KSRKQLGRIMLKGDNITLIQSVS 163
>gi|359691083|emb|CBH32487.1| small nuclear ribonucleoprotein polypeptide E [Oreochromis
mossambicus]
Length = 92
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 53/82 (64%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEV +K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMGIEGCIIGFDEYMNLVLDDAEEVPMKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
RKPLGRI+LKGDNI L+ +
Sbjct: 69 KNRKPLGRIMLKGDNIPLLQSV 90
>gi|340379367|ref|XP_003388198.1| PREDICTED: small nuclear ribonucleoprotein E-like [Amphimedon
queenslandica]
Length = 93
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 21/84 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQ---------------------SGFDEYMNLVLDDAEEVHI 41
+ KVQ++M QPINLIFR+LQ +GFDE+MNLV+ DAEEV++
Sbjct: 5 AQKVQKVMVQPINLIFRYLQNKSRVQVWLYGRQNMRIEGVITGFDEFMNLVMSDAEEVYL 64
Query: 42 KKNTRKPLGRILLKGDNITLMMNT 65
K TRK +GRILL+GDN+TL+M
Sbjct: 65 KTETRKRIGRILLRGDNVTLIMQA 88
>gi|427786001|gb|JAA58452.1| Putative small ribonucleoprotein particle protein sme
[Rhipicephalus pulchellus]
Length = 94
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 55/82 (67%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE++ K
Sbjct: 10 KVQKVMVQPINLIFRYLQNRARIQVWLYENVHLRIEGHIIGFDEYMNLVLDDAEEIYTKP 69
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
RK +GRILLKG+NITL+M+T
Sbjct: 70 KHRKQVGRILLKGENITLIMST 91
>gi|355721057|gb|AES07138.1| small nuclear ribonucleoprotein polypeptide E [Mustela putorius
furo]
Length = 82
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 52/82 (63%), Gaps = 21/82 (25%)
Query: 6 VQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKN 44
VQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 1 VQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTK 60
Query: 45 TRKPLGRILLKGDNITLMMNTG 66
RK LGRI+LKGDNITL+ +
Sbjct: 61 LRKQLGRIMLKGDNITLLQSVS 82
>gi|440908733|gb|ELR58720.1| hypothetical protein M91_20943, partial [Bos grunniens mutus]
Length = 91
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 53/82 (64%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEY NLVLDDAEE+H K
Sbjct: 8 KVQKVMVQPINLIFRYLQNRSHIQVWLYEQVNMRIEGCIIGFDEYRNLVLDDAEEIHSKT 67
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 68 KSRKQLGRIMLKGDNITLIQSV 89
>gi|296476433|tpg|DAA18548.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 92
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 53/82 (64%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDE MNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIRVWLYEQVNMRTEGSIIGFDECMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|440889654|gb|ELR44674.1| hypothetical protein M91_20945 [Bos grunniens mutus]
Length = 92
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 53/82 (64%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDE MNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIRVRLYEQVNMRTEGSIIGFDECMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|426257308|ref|XP_004022271.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Ovis aries]
Length = 92
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 52/79 (65%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEY+NLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNKSQIQVWLYEQVNIWIEGCIIGFDEYVNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLM 62
+RK LG I+LKGDNITL+
Sbjct: 69 KSRKQLGWIMLKGDNITLL 87
>gi|332376438|gb|AEE63359.1| unknown [Dendroctonus ponderosae]
Length = 97
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 54/79 (68%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+++K
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSRVQVWLYENVRLRIEGHIVGFDEYMNLVLDDAEELYVKT 66
Query: 44 NTRKPLGRILLKGDNITLM 62
R+PLGRI+LKGDNIT++
Sbjct: 67 MHRRPLGRIMLKGDNITVI 85
>gi|348563323|ref|XP_003467457.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+L++ GFDEYMNLVLDD EE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLENTSRIQVWLYEQVNMRIEGCIVGFDEYMNLVLDDEEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>gi|296216208|ref|XP_002754465.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
gi|296238888|ref|XP_002764351.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 92
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 52/82 (63%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLD AEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDAAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI LKGDNITL+ +
Sbjct: 69 KSRKQLGRITLKGDNITLLQSV 90
>gi|348586080|ref|XP_003478798.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE H +
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEETHSRT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LG+I+LKGDNITL+ +
Sbjct: 69 KSRKQLGQIMLKGDNITLLQSV 90
>gi|196001475|ref|XP_002110605.1| hypothetical protein TRIADDRAFT_22667 [Trichoplax adhaerens]
gi|190586556|gb|EDV26609.1| hypothetical protein TRIADDRAFT_22667 [Trichoplax adhaerens]
Length = 88
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 53/79 (67%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
+V+++M QPIN+IFRFLQ+ GFDEYMNLVLDDA EV IK
Sbjct: 6 RVKKVMIQPINVIFRFLQNKTRVQIWLYEQTNTRIEGYILGFDEYMNLVLDDAAEVSIKN 65
Query: 44 NTRKPLGRILLKGDNITLM 62
N R+P+GRILLKGDNI+L+
Sbjct: 66 NQRRPIGRILLKGDNISLI 84
>gi|389584836|dbj|GAB67567.1| small nuclear ribonucleoprotein E [Plasmodium cynomolgi strain B]
Length = 94
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 57/90 (63%), Gaps = 23/90 (25%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAE 37
MA+T K+Q+IMTQPIN IFRF + GFDEYMN+VLD++
Sbjct: 1 MAATNKKLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDTRIEGKILGFDEYMNMVLDESA 60
Query: 38 EVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
EV +KKNTRK LG+ILLKGD ITL+M K
Sbjct: 61 EVSVKKNTRKDLGKILLKGDTITLIMEAKK 90
>gi|119589572|gb|EAW69166.1| hCG23490, isoform CRA_a [Homo sapiens]
Length = 92
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPI+LIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKG NITL+ +
Sbjct: 69 KSRKQLGRIMLKGGNITLLQSV 90
>gi|392339645|ref|XP_003753865.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Rattus norvegicus]
Length = 169
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 52/84 (61%), Gaps = 21/84 (25%)
Query: 5 KVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQSG FDEYMNLV DDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQSGSRIQVWLCEQVDAQIEGCIIGFDEYMNLVSDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNTGK 67
+R+ G I+LKGDNITL+ G+
Sbjct: 69 KSREQPGWIMLKGDNITLLQPAGR 92
>gi|320168707|gb|EFW45606.1| hypothetical protein CAOG_03590 [Capsaspora owczarzaki ATCC
30864]
Length = 87
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 54/84 (64%), Gaps = 21/84 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S +VQ++M PINLIF++LQ+ GFDEYMNLVLDDAEE++
Sbjct: 2 SGRVQKVMVLPINLIFKYLQTKTRVQIWLYEQASMRVEGVIVGFDEYMNLVLDDAEELNA 61
Query: 42 KKNTRKPLGRILLKGDNITLMMNT 65
K TRK +GRILLKGDNITL+M
Sbjct: 62 KSQTRKNVGRILLKGDNITLIMGV 85
>gi|242008943|ref|XP_002425253.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212509009|gb|EEB12515.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 96
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 52/80 (65%), Gaps = 21/80 (26%)
Query: 4 TKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIK 42
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE +IK
Sbjct: 7 AKVQKVMVQPINLIFRYLQNRSRVQVWIYENITTRIEGHIVGFDEYMNLVLDDAEEFNIK 66
Query: 43 KNTRKPLGRILLKGDNITLM 62
RK LGRI++KGDNITL+
Sbjct: 67 TKNRKELGRIMMKGDNITLI 86
>gi|348572632|ref|XP_003472096.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDN L+ +
Sbjct: 69 KSRKQLGRIMLKGDNTILLQSV 90
>gi|426361276|ref|XP_004047844.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Gorilla gorilla gorilla]
Length = 92
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNLQIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LG I+LKGDN TL+ +
Sbjct: 69 KSRKQLGWIMLKGDNSTLLQSV 90
>gi|115474803|ref|NP_001060998.1| Os08g0151400 [Oryza sativa Japonica Group]
gi|113622967|dbj|BAF22912.1| Os08g0151400, partial [Oryza sativa Japonica Group]
Length = 64
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/44 (88%), Positives = 43/44 (97%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFDEYMNLVLDDAEE+++KK+TRK LGRILLKGDNITLMMNTGK
Sbjct: 21 GFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLMMNTGK 64
>gi|156096492|ref|XP_001614280.1| small nuclear ribonucleoprotein E [Plasmodium vivax Sal-1]
gi|148803154|gb|EDL44553.1| small nuclear ribonucleoprotein E, putative [Plasmodium vivax]
Length = 94
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 57/90 (63%), Gaps = 23/90 (25%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAE 37
MA+T K+Q+IMTQPIN IFRF + GFDEYMN+VLD++
Sbjct: 1 MAATNKKLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDTRIEGKILGFDEYMNMVLDESA 60
Query: 38 EVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
EV +KKNTRK LG+ILLKGD ITL+M K
Sbjct: 61 EVSLKKNTRKDLGKILLKGDTITLIMEAKK 90
>gi|225713140|gb|ACO12416.1| Small nuclear ribonucleoprotein E [Lepeophtheirus salmonis]
gi|290462431|gb|ADD24263.1| Small nuclear ribonucleoprotein E [Lepeophtheirus salmonis]
Length = 104
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 21/82 (25%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
A+ KVQ++M QPINLIFR+LQ+ GFDEYMNLVL DA EVH
Sbjct: 6 ANQKVQKVMVQPINLIFRYLQNRTRVSVWLYENVNTRIEGHIVGFDEYMNLVLADAAEVH 65
Query: 41 IKKNTRKPLGRILLKGDNITLM 62
+K+ T K +G I+LKGDNITL+
Sbjct: 66 VKRGTTKNVGTIMLKGDNITLI 87
>gi|441598236|ref|XP_004087442.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Nomascus leucogenys]
Length = 92
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
+VQR+M QPINLIFR+L++ GFD+YMNLVLDDAEE+H K
Sbjct: 9 RVQRVMVQPINLIFRYLENRSWIQVWLYEQVNMQIEGCIIGFDKYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
+RK LGRI+LKGDNI L+ +
Sbjct: 69 KSRKQLGRIMLKGDNIPLLQSVS 91
>gi|410956998|ref|XP_003985122.1| PREDICTED: LOW QUALITY PROTEIN: putative small nuclear
ribonucleoprotein polypeptide E-like protein 1-like
[Felis catus]
Length = 103
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 52/83 (62%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ FDEY+NLVLDDAEE+H K
Sbjct: 18 KVQKVMVQPINLIFRYLQNRSWIQVWFYEQVNMXIERCIIDFDEYVNLVLDDAEEIHSKT 77
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
+RK LGRI+LKGDNITL +
Sbjct: 78 KSRKQLGRIMLKGDNITLFQSVS 100
>gi|167533668|ref|XP_001748513.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773032|gb|EDQ86677.1| predicted protein [Monosiga brevicollis MX1]
Length = 128
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 50/79 (63%), Gaps = 21/79 (26%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT 45
+++M QPINL+FRFLQ GFDEYMNLV+D AEEV+ K T
Sbjct: 8 KKVMVQPINLMFRFLQKRSKVSIWLYEHKHMSIEGVIVGFDEYMNLVMDSAEEVNSKAQT 67
Query: 46 RKPLGRILLKGDNITLMMN 64
R+PLGRILLKGDNI LM N
Sbjct: 68 RQPLGRILLKGDNICLMQN 86
>gi|170579069|ref|XP_001894662.1| small nuclear ribonucleoprotein E [Brugia malayi]
gi|158598633|gb|EDP36493.1| small nuclear ribonucleoprotein E, putative [Brugia malayi]
gi|402592161|gb|EJW86090.1| small nuclear ribonucleoprotein E [Wuchereria bancrofti]
Length = 89
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 21/85 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S KVQ++M QPINLIFR+LQ+ GFDEYMN+VLD+AEEV++
Sbjct: 5 SGKVQKVMVQPINLIFRYLQNRSRIQIWLYEDITHRIEGYIIGFDEYMNVVLDEAEEVNM 64
Query: 42 KKNTRKPLGRILLKGDNITLMMNTG 66
K R +GRI+LKGDNITL+ + G
Sbjct: 65 KTKNRNKVGRIMLKGDNITLIQSIG 89
>gi|312005|emb|CAA46626.1| small nuclear ribonucleoprotein E [Mus musculus]
gi|338269|gb|AAA36621.1| small nuclear ribonucleoprotein E, partial [Homo sapiens]
Length = 81
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 51/80 (63%), Gaps = 21/80 (26%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTR 46
++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K +R
Sbjct: 1 KVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 60
Query: 47 KPLGRILLKGDNITLMMNTG 66
K LGRI+LKGDNITL+ +
Sbjct: 61 KQLGRIMLKGDNITLLQSVS 80
>gi|354468865|ref|XP_003496871.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cricetulus
griseus]
gi|344247265|gb|EGW03369.1| Small nuclear ribonucleoprotein E [Cricetulus griseus]
Length = 92
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 21/77 (27%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ G DEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMWIEGCIIGLDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNIT 60
+RK LG+I+LKGDNIT
Sbjct: 69 KSRKQLGQIMLKGDNIT 85
>gi|254281298|ref|NP_001156839.1| small nuclear ribonucleoprotein E [Acyrthosiphon pisum]
Length = 93
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 54/81 (66%), Gaps = 21/81 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR LQ+ GFDEYMNLVLD+A EV+ K
Sbjct: 7 KVQKVMVQPINLIFRHLQNRAKVQVWLQEKIHLRIEGHIVGFDEYMNLVLDEACEVNTKV 66
Query: 44 NTRKPLGRILLKGDNITLMMN 64
++RKP+GRILLKG+NITL+ N
Sbjct: 67 DSRKPVGRILLKGENITLIQN 87
>gi|70954423|ref|XP_746259.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|56526807|emb|CAH78091.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi
chabaudi]
Length = 88
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 57/86 (66%), Gaps = 23/86 (26%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAE 37
MA+T K+Q+IMTQPIN IFRF + GFDEYMN+VLD+++
Sbjct: 1 MATTNKKLQKIMTQPINQIFRFFTNQTVVQIWLYDKPHTRIEGKILGFDEYMNMVLDESK 60
Query: 38 EVHIKKNTRKPLGRILLKGDNITLMM 63
E+ IKKNT+K LG+ILLKGD ITL+M
Sbjct: 61 EISIKKNTKKELGKILLKGDTITLIM 86
>gi|428671949|gb|EKX72864.1| small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 89
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 52/79 (65%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEVHIKK 43
K+Q+IMTQPIN IFRF SG FDEYMN+VLDDAEEV +KK
Sbjct: 7 KLQKIMTQPINQIFRFFTSGTRVQIWLYDQPNTRIEGRIMGFDEYMNMVLDDAEEVTLKK 66
Query: 44 NTRKPLGRILLKGDNITLM 62
+TRK +GRILLKGD +TL+
Sbjct: 67 DTRKDIGRILLKGDCMTLI 85
>gi|341891331|gb|EGT47266.1| hypothetical protein CAEBREN_05081 [Caenorhabditis brenneri]
gi|341897649|gb|EGT53584.1| hypothetical protein CAEBREN_23787 [Caenorhabditis brenneri]
Length = 90
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 21/83 (25%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M++ K+Q++M QP+NLIFR+LQ+ GFDE+MN+V D+AEEV
Sbjct: 1 MSARKLQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
++K N R +GRILLKGDNITL+
Sbjct: 61 NMKTNARNKIGRILLKGDNITLI 83
>gi|322802255|gb|EFZ22651.1| hypothetical protein SINV_02639 [Solenopsis invicta]
Length = 429
Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 46/73 (63%), Gaps = 21/73 (28%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE H K
Sbjct: 8 KVQKVMVQPINLIFRYLQNRSRVQVWLFENVNLRIEGHIVGFDEYMNLVLDDAEEYHQKT 67
Query: 44 NTRKPLGRILLKG 56
RKPLGRI+LKG
Sbjct: 68 KNRKPLGRIMLKG 80
>gi|68071133|ref|XP_677480.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|82596003|ref|XP_726082.1| small nuclear ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23481340|gb|EAA17647.1| small nuclear ribonucleoprotein homolog [Plasmodium yoelii
yoelii]
gi|56497614|emb|CAH98978.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 88
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 23/86 (26%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAE 37
MA+T K+Q+IMTQPIN IFRF + GFDEYMN+VLD+++
Sbjct: 1 MATTNKKLQKIMTQPINQIFRFFTNQTVVQIWLYDKPHTRIEGKILGFDEYMNMVLDESK 60
Query: 38 EVHIKKNTRKPLGRILLKGDNITLMM 63
E+ +KKNT+K LG+ILLKGD ITL+M
Sbjct: 61 EISVKKNTKKELGKILLKGDTITLIM 86
>gi|397521006|ref|XP_003830597.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan paniscus]
Length = 92
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
+VQR+M PINLIFR+LQ+ GFD+YMNLVLDDAEE+H K
Sbjct: 9 RVQRVMVLPINLIFRYLQNRSWIQVWLYEQVNMWIEGCIIGFDKYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
+RK LGRI+LKGDNI L+ +
Sbjct: 69 KSRKQLGRIILKGDNIPLLQSVS 91
>gi|312078394|ref|XP_003141719.1| small nuclear ribonucleoprotein E [Loa loa]
gi|307763117|gb|EFO22351.1| small nuclear ribonucleoprotein E [Loa loa]
Length = 89
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMN+VLD+AEEV++K
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSRIQIWLYEDITHRIEGYIIGFDEYMNVVLDEAEEVNMKT 66
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
R +GRI+LKGDNITL+ + G
Sbjct: 67 KNRNKVGRIMLKGDNITLIQSIG 89
>gi|221058403|ref|XP_002259847.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193809920|emb|CAQ41114.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
Length = 96
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 55/86 (63%), Gaps = 23/86 (26%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAE 37
MA T K+Q+IMTQPIN IFRF + GFDEYMN+VLD++
Sbjct: 1 MAVTNKKLQKIMTQPINQIFRFFTNKTMVQIWLYDKPDTRIEGKILGFDEYMNMVLDESA 60
Query: 38 EVHIKKNTRKPLGRILLKGDNITLMM 63
EV +KKNTRK LG+ILLKGD ITL+M
Sbjct: 61 EVSVKKNTRKDLGKILLKGDTITLIM 86
>gi|392346855|ref|XP_003749650.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 50/79 (63%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQSG FDEYMNLV DDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQSGSRIQVWLCEQVDAQIEGCIIGFDEYMNLVSDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLM 62
+R+ G I+LKGDNITL+
Sbjct: 69 KSREQPGWIMLKGDNITLL 87
>gi|225717902|gb|ACO14797.1| Probable small nuclear ribonucleoprotein E [Caligus clemensi]
Length = 94
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 21/82 (25%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
+ KVQ++M QPINLIFR+LQ+ GFDEYMNLVL DA EVH
Sbjct: 6 GNQKVQKVMVQPINLIFRYLQNRTRVSVWLYENVNTKIEGHIVGFDEYMNLVLADAAEVH 65
Query: 41 IKKNTRKPLGRILLKGDNITLM 62
+KK T K +G I+LKGDNITL+
Sbjct: 66 LKKGTTKNVGTIMLKGDNITLI 87
>gi|339522121|gb|AEJ84225.1| small nuclear ribonucleoprotein E [Capra hircus]
Length = 79
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 49/78 (62%), Gaps = 21/78 (26%)
Query: 10 MTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKP 48
M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K +RK
Sbjct: 1 MVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQ 60
Query: 49 LGRILLKGDNITLMMNTG 66
LGRI+LKGDNITL+ +
Sbjct: 61 LGRIMLKGDNITLLQSVS 78
>gi|299470361|emb|CBN78410.1| Small nuclear ribonucleoprotein-associated protein E [Ectocarpus
siliculosus]
Length = 97
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 52/78 (66%), Gaps = 21/78 (26%)
Query: 6 VQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKN 44
V+++MTQPI+LIFRFLQ+ GFDEYMNLVLD+AEEV +K +
Sbjct: 15 VKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKND 74
Query: 45 TRKPLGRILLKGDNITLM 62
RK LGRI+LKGD ITLM
Sbjct: 75 ERKQLGRIMLKGDTITLM 92
>gi|313239283|emb|CBY14233.1| unnamed protein product [Oikopleura dioica]
gi|313245445|emb|CBY40176.1| unnamed protein product [Oikopleura dioica]
Length = 90
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 51/79 (64%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINL+FRF Q GFDEYMNLVLDD EE+H+K
Sbjct: 7 KVQKVMVQPINLVFRFFQKKIRVQIWLYDVINVRLEGIIVGFDEYMNLVLDDVEEMHVKT 66
Query: 44 NTRKPLGRILLKGDNITLM 62
+ +K +G+ILLKGDNITL+
Sbjct: 67 HFKKNVGKILLKGDNITLI 85
>gi|303288826|ref|XP_003063701.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454769|gb|EEH52074.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 90
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 58/83 (69%), Gaps = 21/83 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+TKVQRIMTQPINLIFRFLQ+ GFDEYMNLVLDDAEEV+
Sbjct: 2 ATKVQRIMTQPINLIFRFLQTKARIQIWLYENTDVVVEGRIIGFDEYMNLVLDDAEEVNK 61
Query: 42 KKNTRKPLGRILLKGDNITLMMN 64
KK T+K +GRILLKGDNIT+M N
Sbjct: 62 KKGTKKTVGRILLKGDNITMMRN 84
>gi|195653717|gb|ACG46326.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 80
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 47/70 (67%), Gaps = 21/70 (30%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
MASTKVQRIMTQPINLIFRFLQS GFDEYMNLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 40 HIKKNTRKPL 49
++KKNT K L
Sbjct: 61 NVKKNTSKDL 70
>gi|354484098|ref|XP_003504228.1| PREDICTED: hypothetical protein LOC100764959 [Cricetulus griseus]
Length = 195
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 21/79 (26%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT 45
Q++M QPINL FR+LQ+ GFDEYMNLVLDDAEE+H K +
Sbjct: 114 QKVMVQPINLTFRYLQNWSRIQVRLYEQVNIRIEGCIIGFDEYMNLVLDDAEEIHSKTKS 173
Query: 46 RKPLGRILLKGDNITLMMN 64
RK LGRI+L+GDN+TL+ +
Sbjct: 174 RKQLGRIMLEGDNMTLLQS 192
>gi|390459179|ref|XP_003732244.1| PREDICTED: LOW QUALITY PROTEIN: putative small nuclear
ribonucleoprotein polypeptide E-like protein 1-like
[Callithrix jacchus]
Length = 115
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 49/79 (62%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEVHIKK 43
KVQ+IM QPINLIFR+LQ+G FDEYMNLVLDDAEE H K
Sbjct: 32 KVQKIMVQPINLIFRYLQNGSQIEVWLYERVNIXIEGCIVSFDEYMNLVLDDAEESHSKT 91
Query: 44 NTRKPLGRILLKGDNITLM 62
+RK GRI+LKGD+ T +
Sbjct: 92 KSRKQXGRIMLKGDDSTWL 110
>gi|452822994|gb|EME30008.1| small nuclear ribonucleoprotein E [Galdieria sulphuraria]
Length = 85
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 50/76 (65%), Gaps = 21/76 (27%)
Query: 8 RIMTQPINLIFRFLQ---------------------SGFDEYMNLVLDDAEEVHIKKNTR 46
+IMTQPINLIFRFLQ SGFDEYMNLVLD+A E ++KKNTR
Sbjct: 5 KIMTQPINLIFRFLQNRTKVVIWLYEETNFRIEGRISGFDEYMNLVLDEAVEWNVKKNTR 64
Query: 47 KPLGRILLKGDNITLM 62
LGRILLKGD ITL+
Sbjct: 65 INLGRILLKGDTITLI 80
>gi|124513718|ref|XP_001350215.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|23615632|emb|CAD52624.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 93
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 55/86 (63%), Gaps = 23/86 (26%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAE 37
MA+T K+Q+IMTQPIN IFRF + GFDEYMN+VLD +
Sbjct: 1 MATTNKKLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDMRIEGIILGFDEYMNMVLDQTK 60
Query: 38 EVHIKKNTRKPLGRILLKGDNITLMM 63
E+ +KKNT+K LG+ILLKGD ITL+M
Sbjct: 61 EISVKKNTKKELGKILLKGDTITLIM 86
>gi|417395580|gb|JAA44844.1| Putative small nuclear ribonucleoprotein e [Desmodus rotundus]
Length = 92
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
+VQ++M QPINLI R+LQ GFDEYMNLVLDDAEE+H K
Sbjct: 9 RVQKVMVQPINLIVRYLQDRSQIQLWLYEQVNVWIEGYVVGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGR +LKG+NI L+ N
Sbjct: 69 KSRKQLGRSMLKGNNIILLQNV 90
>gi|346468665|gb|AEO34177.1| hypothetical protein [Amblyomma maculatum]
Length = 99
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 55/87 (63%), Gaps = 26/87 (29%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE++ K
Sbjct: 10 KVQKVMVQPINLIFRYLQNRARIQVWLYENVALRIEGHIIGFDEYMNLVLDDAEEIYTKS 69
Query: 44 NTRKPL-----GRILLKGDNITLMMNT 65
RK + GRILLKG+NI+L+M+T
Sbjct: 70 KQRKQVAIPRPGRILLKGENISLIMST 96
>gi|313228047|emb|CBY23197.1| unnamed protein product [Oikopleura dioica]
Length = 90
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINL+FRF Q GFDEYMNLVLDD EE+H+K
Sbjct: 7 KVQKVMVQPINLVFRFFQKKIRVQIWLYDVVNLRLEGIIVGFDEYMNLVLDDVEEMHVKT 66
Query: 44 NTRKPLGRILLKGDNITLM 62
+ ++ +G+ILLKGDNITL+
Sbjct: 67 HFKRNVGKILLKGDNITLI 85
>gi|332212934|ref|XP_003255575.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Nomascus leucogenys]
Length = 94
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDE NLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRPWIQVWVYEQVNLWTGSFIIGFDECKNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGD ITL+ +
Sbjct: 69 KSRKQLGRIMLKGDTITLLQSV 90
>gi|412985477|emb|CCO18923.1| small nuclear ribonucleoprotein E [Bathycoccus prasinos]
Length = 91
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 53/90 (58%), Gaps = 25/90 (27%)
Query: 3 STKVQRIMTQPINLIFRFLQS-----------------------GFDEYMNLVLDDAEEV 39
+TKVQRIMTQPINLIFRFLQ+ GFDEYMNLVLDD EEV
Sbjct: 2 ATKVQRIMTQPINLIFRFLQTKSRVQIWLYEHAANGDVLEGQIVGFDEYMNLVLDDCEEV 61
Query: 40 HI--KKNTRKPLGRILLKGDNITLMMNTGK 67
R +GR+LLKGD++T+M+ K
Sbjct: 62 KRVGGAKQRTSVGRVLLKGDSVTMMVKVDK 91
>gi|296473647|tpg|DAA15762.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 92
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 49/78 (62%), Gaps = 21/78 (26%)
Query: 6 VQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKN 44
VQ+ QPINLIFR LQ+ GFDEYMNLVLDDAE++H K
Sbjct: 10 VQKGQVQPINLIFRCLQNRSRIQVWLYEQVNMWTEGCTIGFDEYMNLVLDDAEDIHSKTK 69
Query: 45 TRKPLGRILLKGDNITLM 62
+RK LGRI+LKGDNITL+
Sbjct: 70 SRKQLGRIMLKGDNITLL 87
>gi|332845410|ref|XP_003315041.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan troglodytes]
Length = 92
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
+VQR+ PINLIFR+LQ+ GFD+YMNLVLDDAEE+H K
Sbjct: 9 RVQRVTVLPINLIFRYLQNRSWIQVWLYEQVNMWIEGCIIGFDKYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
+RK LGRI+LKGDNI L+ +
Sbjct: 69 KSRKQLGRIILKGDNIPLLQSVS 91
>gi|71027525|ref|XP_763406.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
gi|85000711|ref|XP_955074.1| small nuclear ribonucleoprotein (E) [Theileria annulata strain
Ankara]
gi|65303220|emb|CAI75598.1| small nuclear ribonucleoprotein (E), putative [Theileria
annulata]
gi|68350359|gb|EAN31123.1| small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 91
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 50/79 (63%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEVHIKK 43
K+Q+IMTQPIN IFRF G FDEYMN+VLD+A EVH+KK
Sbjct: 7 KLQKIMTQPINQIFRFFTGGTRVQIWLFDQPNTKIEGTIRGFDEYMNMVLDNATEVHVKK 66
Query: 44 NTRKPLGRILLKGDNITLM 62
N +K +GRILLKGD +TL+
Sbjct: 67 NVKKDVGRILLKGDCMTLI 85
>gi|431900697|gb|ELK08143.1| Small nuclear ribonucleoprotein E [Pteropus alecto]
Length = 79
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 48/78 (61%), Gaps = 21/78 (26%)
Query: 10 MTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKP 48
M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K +RK
Sbjct: 1 MVQPINLIFRYLQNRSQIQVWLYEQVNMRIESCIVGFDEYMNLVLDDAEEIHSKTKSRKQ 60
Query: 49 LGRILLKGDNITLMMNTG 66
+G I+LKGDNITL+ +
Sbjct: 61 VGWIMLKGDNITLLQSVS 78
>gi|268571317|ref|XP_002641005.1| C. briggsae CBR-SNR-6 protein [Caenorhabditis briggsae]
gi|190360255|sp|A8XDT0.1|RUXE_CAEBR RecName: Full=Probable small nuclear ribonucleoprotein E;
Short=snRNP-E; AltName: Full=Sm protein E; Short=Sm-E;
Short=SmE
Length = 90
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 21/83 (25%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+ K+Q++M QP+NLIFR+LQ+ GFDE+MN+V D+AEEV
Sbjct: 1 MSQRKIQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
++K R +GRILLKGDNITL+
Sbjct: 61 NMKTKGRNKIGRILLKGDNITLI 83
>gi|324518207|gb|ADY47035.1| Small nuclear ribonucleoprotein E [Ascaris suum]
Length = 128
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 21/84 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+ KVQ++M QPINLIFR+LQ+ FDEYMN+VLD+AEEV++
Sbjct: 44 AGKVQKVMVQPINLIFRYLQNRSRIQIWLYEDVTHRIEGYIIWFDEYMNVVLDEAEEVNL 103
Query: 42 KKNTRKPLGRILLKGDNITLMMNT 65
K R +GRILLKGDNITL+ +
Sbjct: 104 KTKNRNKVGRILLKGDNITLIQSV 127
>gi|403223071|dbj|BAM41202.1| small nuclear ribonucleoprotein [Theileria orientalis strain
Shintoku]
Length = 94
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 51/79 (64%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEVHIKK 43
K+Q+IMTQPIN IFRF G FDEYMN+VLDDA+EV++KK
Sbjct: 10 KLQKIMTQPINQIFRFFTGGTRVQIWLFEQPYMKIEGTIRGFDEYMNMVLDDAQEVYMKK 69
Query: 44 NTRKPLGRILLKGDNITLM 62
N +K +GRILLKGD +TL+
Sbjct: 70 NLKKDVGRILLKGDCMTLI 88
>gi|390458031|ref|XP_003732042.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 89
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 50/76 (65%), Gaps = 18/76 (23%)
Query: 5 KVQRIMTQPINLI---------FRFLQS---------GFDEYMNLVLDDAEEVHIKKNTR 46
KVQ++M QPINLI + + Q GFDEYMNLVLDDAEE+H K +R
Sbjct: 9 KVQKVMVQPINLILTNRSQIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 68
Query: 47 KPLGRILLKGDNITLM 62
K LGRI+LKGDNITL+
Sbjct: 69 KQLGRIMLKGDNITLL 84
>gi|308470011|ref|XP_003097241.1| CRE-SNR-6 protein [Caenorhabditis remanei]
gi|308240461|gb|EFO84413.1| CRE-SNR-6 protein [Caenorhabditis remanei]
Length = 90
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 21/83 (25%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+ K+Q++M QP+NLIFR+LQ+ GFDE+MN+V D+AEEV
Sbjct: 1 MSQRKLQKVMVQPVNLIFRYLQNRTRVQIWLYEDITHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
++K R +GRILLKGDNITL+
Sbjct: 61 NMKTKGRNKIGRILLKGDNITLI 83
>gi|426386751|ref|XP_004059844.1| PREDICTED: small nuclear ribonucleoprotein E-like [Gorilla
gorilla gorilla]
Length = 92
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M Q INLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMAQLINLIFRYLQNRSRVQVRLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
+RK LGR++LK D+ TL+ +
Sbjct: 69 KSRKQLGRLMLKRDDSTLLQSVS 91
>gi|296222762|ref|XP_002757308.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 97
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 51/79 (64%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ G D+YMNLVL DAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRLWIQVWPYEQVNMRIEGCVIGIDKYMNLVLGDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLM 62
+RK LG+++LKGDN+TL+
Sbjct: 69 KSRKRLGQMMLKGDNVTLL 87
>gi|339247003|ref|XP_003375135.1| small nuclear ribonucleoprotein E [Trichinella spiralis]
gi|316971586|gb|EFV55343.1| small nuclear ribonucleoprotein E [Trichinella spiralis]
Length = 93
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 21/82 (25%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
KVQ++M QPINL+FRFLQS GFDE+MN+VL++AEEV
Sbjct: 7 GQPKVQKVMVQPINLVFRFLQSHCRVQFWLYENTHLRIDGYIVGFDEFMNIVLEEAEEVD 66
Query: 41 IKKNTRKPLGRILLKGDNITLM 62
+K R+ +GRILLKG+ ITL+
Sbjct: 67 LKSKQRRQIGRILLKGECITLI 88
>gi|17556060|ref|NP_499620.1| Protein SNR-6 [Caenorhabditis elegans]
gi|29428070|sp|Q9XTU6.1|RUXE_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein E;
Short=snRNP-E; AltName: Full=Sm protein E; Short=Sm-E;
Short=SmE
gi|3979991|emb|CAB11551.1| Protein SNR-6 [Caenorhabditis elegans]
Length = 90
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 21/83 (25%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M++ K+ ++M QP+NLIFR+LQ+ GFDE+MN+V D+AEEV
Sbjct: 1 MSTRKLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
++K R +GRILLKGDNITL+
Sbjct: 61 NMKTKGRNKIGRILLKGDNITLI 83
>gi|390477421|ref|XP_002760651.2| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 79
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 46/74 (62%), Gaps = 21/74 (28%)
Query: 10 MTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKP 48
M P NLIFR+LQ+ GFDEYMNLVLDDAEE+H K +RK
Sbjct: 1 MGHPKNLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQ 60
Query: 49 LGRILLKGDNITLM 62
LGRI+LKGDNITL+
Sbjct: 61 LGRIMLKGDNITLL 74
>gi|358056368|dbj|GAA97735.1| hypothetical protein E5Q_04414 [Mixia osmundae IAM 14324]
Length = 91
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 25/90 (27%)
Query: 3 STKVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEVHI 41
S + R+M QPIN+IF++LQ+G FDE+MN+VLDDAEE++I
Sbjct: 2 SGRQSRVMVQPINVIFKYLQAGTRVQLWLYDILDFRLEGKIIGFDEFMNVVLDDAEEIYI 61
Query: 42 KKN----TRKPLGRILLKGDNITLMMNTGK 67
K+ RK LGR+LLKG+NITL+ T K
Sbjct: 62 KRKDDRPERKSLGRLLLKGENITLIQATTK 91
>gi|392334358|ref|XP_002725436.2| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|392355007|ref|XP_002728648.2| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QP +LI R+LQ+ GFDEYMNLVLDD EE+H K
Sbjct: 9 KVQKVMVQPSSLIIRYLQNRSRIQVWLYEQVNMWIEGCIIGFDEYMNLVLDDTEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+ K LG+I+LKGDNI L+ +
Sbjct: 69 KSGKQLGQIMLKGDNIALLQSV 90
>gi|395531172|ref|XP_003767656.1| PREDICTED: uncharacterized protein LOC100930096 [Sarcophilus
harrisii]
Length = 226
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 21/77 (27%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRK 47
+ T+ NLIFR+LQ+ GFDEYMNLVLDDAEE+H K +RK
Sbjct: 147 LTTRGQNLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK 206
Query: 48 PLGRILLKGDNITLMMN 64
LGRI+LKGDNITL+ +
Sbjct: 207 QLGRIMLKGDNITLLQS 223
>gi|403351354|gb|EJY75167.1| putative small nuclear ribonucleoprotein E [Oxytricha trifallax]
Length = 91
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 21/84 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
K+Q++M +PI LI++F Q+ GFDEYMN VLDDAEE++ KK
Sbjct: 8 KLQKLMIRPIFLIYKFFQTKSRVEIWLYENADLRIEGKIIGFDEYMNTVLDDAEEIYQKK 67
Query: 44 NTRKPLGRILLKGDNITLMMNTGK 67
R+ LGRI+LKGDNI+L+ N +
Sbjct: 68 GNRRKLGRIILKGDNISLICNISE 91
>gi|164663173|ref|XP_001732708.1| hypothetical protein MGL_0483 [Malassezia globosa CBS 7966]
gi|159106611|gb|EDP45494.1| hypothetical protein MGL_0483 [Malassezia globosa CBS 7966]
Length = 87
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 22/82 (26%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S + QR+M QPIN+IFR LQ GFDE+MN+ L DAEEVH+
Sbjct: 2 SGRQQRVMIQPINVIFRHLQQQTRVSLWLYDNVEYRLEGKIIGFDEFMNVTLADAEEVHM 61
Query: 42 -KKNTRKPLGRILLKGDNITLM 62
+ RKPLGR+LLKGDNITL+
Sbjct: 62 NAQKDRKPLGRLLLKGDNITLI 83
>gi|260947628|ref|XP_002618111.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847983|gb|EEQ37447.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 88
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 21/83 (25%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+S K ++ M PINLIF++LQ GFDE+MN+V+D+AEE+
Sbjct: 1 MSSVKSKKSMLPPINLIFKYLQQQSVVTIWLYEQTQSRIQGKVRGFDEFMNIVIDEAEEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
K +R+ LGRILLKGDNITL+
Sbjct: 61 STKDGSRETLGRILLKGDNITLI 83
>gi|148707697|gb|EDL39644.1| small nuclear ribonucleoprotein E, isoform CRA_b [Mus musculus]
Length = 86
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 45/72 (62%), Gaps = 21/72 (29%)
Query: 15 NLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKPLGRIL 53
NLIFR+LQ+ GFDEYMNLVLDDAEE+H K +RK LGRI+
Sbjct: 13 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 72
Query: 54 LKGDNITLMMNT 65
LKGDNITL+ +
Sbjct: 73 LKGDNITLLQSV 84
>gi|119611901|gb|EAW91495.1| small nuclear ribonucleoprotein polypeptide E, isoform CRA_b
[Homo sapiens]
Length = 84
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 44/69 (63%), Gaps = 21/69 (30%)
Query: 15 NLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKPLGRIL 53
NLIFR+LQ+ GFDEYMNLVLDDAEE+H K +RK LGRI+
Sbjct: 11 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 70
Query: 54 LKGDNITLM 62
LKGDNITL+
Sbjct: 71 LKGDNITLL 79
>gi|109018143|ref|XP_001098283.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Macaca mulatta]
Length = 92
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 21/77 (27%)
Query: 5 KVQRIMTQPINLIFRFLQ---------------------SGFDEYMNLVLDDAEEVHIKK 43
KVQ+ +T+PI+LIFRFLQ +GFDEYMN VL DAEE++ K
Sbjct: 9 KVQKAVTEPIDLIFRFLQNRFQIQVWLYEQVNIWIEGCITGFDEYMNFVLVDAEEIYSKT 68
Query: 44 NTRKPLGRILLKGDNIT 60
RK LG I+LKGDNIT
Sbjct: 69 KLRKQLGWIMLKGDNIT 85
>gi|299755906|ref|XP_002912145.1| hypothetical protein CC1G_13677 [Coprinopsis cinerea
okayama7#130]
gi|298411435|gb|EFI28651.1| hypothetical protein CC1G_13677 [Coprinopsis cinerea
okayama7#130]
Length = 87
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 22/82 (26%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S++ QR+M QPIN+IF+ LQ GFDE+MNLV+DDA EV++
Sbjct: 2 SSRQQRVMVQPINVIFKNLQQKTKVVIWLYDNIEMRLEGRIIGFDEFMNLVIDDAAEVYV 61
Query: 42 K-KNTRKPLGRILLKGDNITLM 62
K R+ LGRILLKGDNITL+
Sbjct: 62 KDAKPRRELGRILLKGDNITLI 83
>gi|326933691|ref|XP_003212934.1| PREDICTED: small nuclear ribonucleoprotein E-like [Meleagris
gallopavo]
Length = 85
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 44/69 (63%), Gaps = 21/69 (30%)
Query: 15 NLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKPLGRIL 53
NLIFR+LQ+ GFDEYMNLVLDDAEE+H K +RK LGRI+
Sbjct: 12 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 71
Query: 54 LKGDNITLM 62
LKGDNITL+
Sbjct: 72 LKGDNITLL 80
>gi|399218257|emb|CCF75144.1| unnamed protein product [Babesia microti strain RI]
Length = 89
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 48/79 (60%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEVHIKK 43
++Q+IMTQPIN IFR SG FDEYMN+VLDDAE V+ K
Sbjct: 7 RLQKIMTQPINQIFRLFTSGVRVQIWLFDEPNIKIEGRIKGFDEYMNMVLDDAESVNQKH 66
Query: 44 NTRKPLGRILLKGDNITLM 62
TRK LG+ILLKGD +TL+
Sbjct: 67 KTRKSLGKILLKGDCMTLI 85
>gi|268637717|ref|XP_002649120.1| small nuclear ribonucleoprotein E [Dictyostelium discoideum AX4]
gi|256012871|gb|EEU04068.1| small nuclear ribonucleoprotein E [Dictyostelium discoideum AX4]
Length = 92
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 50/87 (57%), Gaps = 21/87 (24%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+ + +M +PI LIF+FL G DEYMNLVLD+A E+
Sbjct: 1 MSRHHAKSVMIKPITLIFKFLTQKTEVQIMLFENTDIRIQGVIIGLDEYMNLVLDNASEL 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTG 66
IKK T+KPLG+ILLKGDNI+L++
Sbjct: 61 SIKKKTKKPLGQILLKGDNISLVLEAA 87
>gi|409083288|gb|EKM83645.1| hypothetical protein AGABI1DRAFT_110295 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426201658|gb|EKV51581.1| hypothetical protein AGABI2DRAFT_189809 [Agaricus bisporus var.
bisporus H97]
Length = 87
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 22/82 (26%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S + QR+M QPIN+IF+ LQ+ GFDE+MNLV+DDA EV++
Sbjct: 2 SGRQQRVMVQPINVIFKNLQTRSKISVWLYDNIEMRIEGRIIGFDEFMNLVIDDAVEVYV 61
Query: 42 KK-NTRKPLGRILLKGDNITLM 62
K+ RK LGRILLKGDNITL+
Sbjct: 62 KEAKPRKELGRILLKGDNITLI 83
>gi|156083891|ref|XP_001609429.1| small nuclear ribonucleoprotein E [Babesia bovis T2Bo]
gi|154796680|gb|EDO05861.1| small nuclear ribonucleoprotein E, putative [Babesia bovis]
Length = 89
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEVHIKK 43
K+Q+IMTQPIN IFRF SG FDEYMN+VL+D EE+++KK
Sbjct: 7 KLQQIMTQPINQIFRFFTSGTRVQIWLYDQPNLKIEGKIRGFDEYMNMVLEDVEELYVKK 66
Query: 44 NTRKPLGRILLKGDNITLM 62
R+ LG ILLKGD + L+
Sbjct: 67 QERRALGTILLKGDAMALI 85
>gi|338724569|ref|XP_003364968.1| PREDICTED: small nuclear ribonucleoprotein E-like, partial [Equus
caballus]
Length = 71
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 45/63 (71%)
Query: 4 TKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMM 63
+++Q + + +N+ GFDEYMNLVLDDAEE+H K +RK LGRI+LKGDNITL+
Sbjct: 8 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQ 67
Query: 64 NTG 66
+
Sbjct: 68 SVS 70
>gi|338259|gb|AAB59365.1| small nuclear ribonucleic protein, partial [Homo sapiens]
Length = 92
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 45/73 (61%), Gaps = 21/73 (28%)
Query: 15 NLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKPLGRIL 53
NLIFR+LQ+ GFDEYMNLVLDDAEE+H K +RK LGRI+
Sbjct: 19 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 78
Query: 54 LKGDNITLMMNTG 66
LKGDNITL+ +
Sbjct: 79 LKGDNITLLQSVS 91
>gi|444724508|gb|ELW65111.1| Small nuclear ribonucleoprotein E [Tupaia chinensis]
Length = 92
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 47/83 (56%), Gaps = 21/83 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
K Q++M QPINLI R LQ+ FDEY+NLV DDAEE H K
Sbjct: 9 KAQKVMVQPINLILRNLQNRSRTQVWLYEQVNIWIEGCIISFDEYVNLVSDDAEESHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNTG 66
+RK LGRI+L GDNITL+ +
Sbjct: 69 KSRKQLGRIMLIGDNITLLQSVS 91
>gi|254567830|ref|XP_002491025.1| Core Sm protein Sm E [Komagataella pastoris GS115]
gi|238030822|emb|CAY68745.1| Core Sm protein Sm E [Komagataella pastoris GS115]
Length = 88
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 21/83 (25%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+S++ Q++M PINL+F+FLQ GFDE+MN+V+D+A E+
Sbjct: 1 MSSSRTQKVMVPPINLMFKFLQQQSTVQIWLYEQNNTRINGIIKGFDEFMNVVVDEAIEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
++K ++ LGR+LLKGDNITL+
Sbjct: 61 NLKTQKQRKLGRLLLKGDNITLI 83
>gi|290989307|ref|XP_002677279.1| predicted protein [Naegleria gruberi]
gi|284090886|gb|EFC44535.1| predicted protein [Naegleria gruberi]
Length = 89
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEVHIKK 43
K Q++MTQPI +F +L+ G FDEYMN+VLD+ EE++ KK
Sbjct: 3 KKQKMMTQPITQVFEYLKQGSRIQIWLYENTDLRIEGNILGFDEYMNIVLDETEEIYTKK 62
Query: 44 NTRKPLGRILLKGDNITLM 62
+ RK +GRILLKGDNI+L+
Sbjct: 63 SQRKKIGRILLKGDNISLI 81
>gi|281338088|gb|EFB13672.1| hypothetical protein PANDA_003444 [Ailuropoda melanoleuca]
Length = 83
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
+V+++M QPINL R+LQ+ GFDE MNL+LDDAEE+ K
Sbjct: 5 RVRKVMVQPINLTLRYLQNRSRIWVWLYEQVNMRKEGCIIGFDESMNLILDDAEEILSKT 64
Query: 44 NTRKPLGRILLKGDNITLM 62
+RK LGRI+LKGDNIT +
Sbjct: 65 KSRKQLGRIMLKGDNITFL 83
>gi|402224412|gb|EJU04475.1| LSM-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 93
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 23/83 (27%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S + QR+M QPIN+IF+ LQ GFDE+MN+VLDDA EV +
Sbjct: 2 SGRQQRVMVQPINVIFKNLQQRVPVQIWLYDNVEMRIEGRIIGFDEFMNVVLDDASEVFV 61
Query: 42 KKNTRKP--LGRILLKGDNITLM 62
+ ++ P LGRILLKGDNITL+
Sbjct: 62 SEESKSPRSLGRILLKGDNITLI 84
>gi|395326007|gb|EJF58421.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 87
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 22/82 (26%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S + QR+M QPIN+IF+ LQ GFDE+MN+V+DDA EV++
Sbjct: 2 SNRQQRVMVQPINVIFKNLQQRTKVVIWLYDNIEMRIEGTIIGFDEFMNVVIDDAAEVYV 61
Query: 42 K-KNTRKPLGRILLKGDNITLM 62
K R+ LGRILLKGDNITL+
Sbjct: 62 KDAKPRRELGRILLKGDNITLI 83
>gi|389751015|gb|EIM92088.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 87
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 22/82 (26%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S + QR+M QPIN+IF+ LQ GFDE+MN+V+DDA EV++
Sbjct: 2 SGRQQRVMVQPINVIFKNLQQRTKVVVWLYDNIEMRIEGRIIGFDEFMNIVIDDAAEVYV 61
Query: 42 KK-NTRKPLGRILLKGDNITLM 62
K+ R+ LGRI+LKGDNITL+
Sbjct: 62 KEAKPRRELGRIMLKGDNITLI 83
>gi|388582050|gb|EIM22356.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 49/84 (58%), Gaps = 24/84 (28%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S + Q++M QPIN+IF++LQ GFDEYMN++LDD EEV
Sbjct: 2 SGRKQQVMVQPINVIFKYLQQRTKIQIWLYDNVDCRLEGRIIGFDEYMNVILDDVEEVFY 61
Query: 42 KKNTRKP---LGRILLKGDNITLM 62
K +P LGRILLKGDNITL+
Sbjct: 62 GKKQSQPRNSLGRILLKGDNITLI 85
>gi|380800507|gb|AFE72129.1| small nuclear ribonucleoprotein E, partial [Macaca mulatta]
Length = 59
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 35/39 (89%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFDEYMNLVLDDAEE+H K +RK LGRI+LKGDNITL+
Sbjct: 16 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 54
>gi|219127194|ref|XP_002183825.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404548|gb|EEC44494.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 100
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 21/86 (24%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M +V+++MT PIN+IF LQ GFDEYMN+V+DDA E+
Sbjct: 1 MPPKRVKKVMTLPINVIFSHLQKKSRVRLWLYEDSRLQIEGQIIGFDEYMNMVMDDAVEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNT 65
KKN R+ +GRILLKGD +T++
Sbjct: 61 DSKKNVRQEVGRILLKGDAVTMIQEA 86
>gi|332248094|ref|XP_003273196.1| PREDICTED: small nuclear ribonucleoprotein E [Nomascus
leucogenys]
Length = 52
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 35/39 (89%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFDEYMNLVLDDAEE+H K +RK LGRI+LKGDNITL+
Sbjct: 9 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 47
>gi|395838983|ref|XP_003792383.1| PREDICTED: small nuclear ribonucleoprotein E [Otolemur garnettii]
Length = 90
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 21/68 (30%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGR 51
+RK LG+
Sbjct: 69 KSRKQLGK 76
>gi|449550635|gb|EMD41599.1| hypothetical protein CERSUDRAFT_61589 [Ceriporiopsis
subvermispora B]
Length = 87
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 22/82 (26%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S + QR+M QPIN+IF+ LQ GFDE+MN+V+D+A EV++
Sbjct: 2 SNRQQRVMVQPINVIFKNLQQRTKIVIWLYDNIEMRIEGRIIGFDEFMNVVIDEAAEVYV 61
Query: 42 K-KNTRKPLGRILLKGDNITLM 62
K R+ LGRILLKGDNITL+
Sbjct: 62 KDAKPRRELGRILLKGDNITLI 83
>gi|348683781|gb|EGZ23596.1| hypothetical protein PHYSODRAFT_486753 [Phytophthora sojae]
Length = 70
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%)
Query: 4 TKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMM 63
+++Q + + +N GFDEYMNLVLDDAEE+ +K R PLGRILLKGD ITLMM
Sbjct: 2 SRIQVWLYEQVNTRIEGRIMGFDEYMNLVLDDAEELDVKNLKRTPLGRILLKGDTITLMM 61
>gi|390604052|gb|EIN13443.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 87
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 22/82 (26%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S + QR+M QPIN+IF+ LQ GFDE+MN+V+D+A EV++
Sbjct: 2 SGRQQRVMVQPINVIFKNLQQRQKVVVWLYDNIEMRIEGRIIGFDEFMNVVMDEAAEVYV 61
Query: 42 KK-NTRKPLGRILLKGDNITLM 62
K+ R+ +GRILLKGDNITL+
Sbjct: 62 KEAKPRREIGRILLKGDNITLI 83
>gi|301115033|ref|XP_002999286.1| small nuclear ribonucleoprotein E [Phytophthora infestans T30-4]
gi|262111380|gb|EEY69432.1| small nuclear ribonucleoprotein E [Phytophthora infestans T30-4]
Length = 79
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%)
Query: 4 TKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMM 63
+++Q + + +N GFDEYMNLVLDDAEE+ +K R PLGRILLKGD ITLMM
Sbjct: 11 SRIQVWLYEQVNTRIEGRIMGFDEYMNLVLDDAEELDVKNLKRTPLGRILLKGDTITLMM 70
>gi|392571823|gb|EIW64995.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 87
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 22/82 (26%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S + QR+M QPIN+IF+ LQ GFDE+MN+V++DA EV++
Sbjct: 2 SGRQQRVMVQPINVIFKNLQQRTKVVIWLYDNIDMRIEGTIIGFDEFMNIVIEDAAEVYV 61
Query: 42 K-KNTRKPLGRILLKGDNITLM 62
K R+ LGRILLKGDNITL+
Sbjct: 62 KDAKPRRELGRILLKGDNITLI 83
>gi|281353334|gb|EFB28918.1| hypothetical protein PANDA_013986 [Ailuropoda melanoleuca]
Length = 86
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M I LIFR LQ+ FDEY+NLVLDDA+E+H K
Sbjct: 6 KVQKVMVHTIILIFRSLQNRFQIQVWLHNQANMRIEGCIHSFDEYVNLVLDDAKEIHYKT 65
Query: 44 NTRKPLGRILLKGDNITLM 62
+RK LG+I+LKGDN TL+
Sbjct: 66 KSRKQLGQIMLKGDNTTLL 84
>gi|449524146|ref|XP_004169084.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 1
[Cucumis sativus]
gi|449524148|ref|XP_004169085.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 2
[Cucumis sativus]
Length = 39
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 37/39 (94%)
Query: 29 MNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
MNLVLDDAEEV++KK ++K LGRILLKGDNITLMMN+GK
Sbjct: 1 MNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSGK 39
>gi|430813791|emb|CCJ28894.1| unnamed protein product [Pneumocystis jirovecii]
Length = 92
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 21/77 (27%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT 45
Q++M PIN IF+ LQ GFDE+MNLV+D+A E+ KKN+
Sbjct: 11 QKVMIPPINFIFKLLQQHTTVCIWLYEQTEMKIEGKIRGFDEFMNLVIDEAVEIGQKKNS 70
Query: 46 RKPLGRILLKGDNITLM 62
+ LGRILLKGDNITL+
Sbjct: 71 SRSLGRILLKGDNITLI 87
>gi|302695849|ref|XP_003037603.1| hypothetical protein SCHCODRAFT_48486 [Schizophyllum commune
H4-8]
gi|300111300|gb|EFJ02701.1| hypothetical protein SCHCODRAFT_48486 [Schizophyllum commune
H4-8]
Length = 89
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 22/82 (26%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S + QR+M QPIN+IF+ LQ GFDE+MN+V+D+A EV I
Sbjct: 2 SQRQQRVMVQPINVIFKNLQQKSHVCIWLYDNIEMRIEGRIIGFDEFMNVVIDEAVEVFI 61
Query: 42 KK-NTRKPLGRILLKGDNITLM 62
K+ R+ LGRILLKGDNITL+
Sbjct: 62 KEAKPRRELGRILLKGDNITLI 83
>gi|346474106|gb|AEO36897.1| hypothetical protein [Amblyomma maculatum]
Length = 78
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 65
GFDEYMNLVLDDAEE++ K RK +GRILLKG+NI+L+M+T
Sbjct: 34 GFDEYMNLVLDDAEEIYTKSKQRKQVGRILLKGENISLIMST 75
>gi|224003489|ref|XP_002291416.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973192|gb|EED91523.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 86
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 45/83 (54%), Gaps = 21/83 (25%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M KV+++MT PIN+IF LQ GFDEYMN VLD AEEV
Sbjct: 1 MPPRKVKKVMTLPINVIFGHLQKKNRVKIWLYEDTRMTIEGQIIGFDEYMNFVLDGAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
K + +GRILLKGD ITLM
Sbjct: 61 DTKSGKKTEVGRILLKGDAITLM 83
>gi|19112516|ref|NP_595724.1| Sm snRNP core protein Sme1 [Schizosaccharomyces pombe 972h-]
gi|74638881|sp|Q9USZ3.1|RUXE_SCHPO RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|6165482|emb|CAB59808.1| Sm snRNP core protein Sme1 [Schizosaccharomyces pombe]
Length = 84
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 22/81 (27%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S +VQ++M PIN IF+ LQ GFDE+MN+VLDDA +V
Sbjct: 2 SGRVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDA 61
Query: 42 KKNTRKPLGRILLKGDNITLM 62
K N R+ LGRILLKGDNITL+
Sbjct: 62 KNNKRE-LGRILLKGDNITLI 81
>gi|300176178|emb|CBK23489.2| unnamed protein product [Blastocystis hominis]
Length = 95
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 30/85 (35%)
Query: 8 RIMTQPINLIFRFLQ------------------------------SGFDEYMNLVLDDAE 37
+ + QPI++IFRFLQ +GFDEYMN+VLD+A
Sbjct: 7 KTLLQPIDIIFRFLQGISFFKMATHKTGVQIWLYDQPHVRIEGVINGFDEYMNIVLDNAS 66
Query: 38 EVHIKKNTRKPLGRILLKGDNITLM 62
EV+IK TRK LG+ILLKGDN+TL+
Sbjct: 67 EVNIKMKTRKNLGKILLKGDNVTLI 91
>gi|170085379|ref|XP_001873913.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651465|gb|EDR15705.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 87
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 22/82 (26%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S + QR+M QPIN+IF+ LQ GFDE+MN+V+D+A EV +
Sbjct: 2 SGRQQRVMVQPINVIFKNLQQKTKVVIWLYDNVEMRIEGRIIGFDEFMNIVIDEAAEVFV 61
Query: 42 K-KNTRKPLGRILLKGDNITLM 62
K R+ LGRILLKGDNITL+
Sbjct: 62 KDAKPRRELGRILLKGDNITLI 83
>gi|344289176|ref|XP_003416321.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein
E-like [Loxodonta africana]
Length = 124
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 22/86 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQSG---------------------FDEYMNL-VLDDAEEVH 40
S K+Q+++ QP LI R+LQSG FDE MNL DDAEE+H
Sbjct: 18 SQKMQKVIMQPTTLICRYLQSGSWIQVWLQEQVNIRVEDCVIXFDECMNLGAEDDAEEIH 77
Query: 41 IKKNTRKPLGRILLKGDNITLMMNTG 66
K +RK LG I++KGDNITL+ +
Sbjct: 78 SKTTSRKELGWIMIKGDNITLLQSVS 103
>gi|343429490|emb|CBQ73063.1| probable small nuclear ribonucleoprotein E [Sporisorium reilianum
SRZ2]
Length = 85
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 44/76 (57%), Gaps = 21/76 (27%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTR 46
++ QPIN+IFR LQ GFDE+MN+ L DAEEV KK+ R
Sbjct: 6 KVSVQPINIIFRHLQQQTRVSLWLYDNIDFRIEGKIIGFDEFMNVTLADAEEVWTKKDKR 65
Query: 47 KPLGRILLKGDNITLM 62
LGRILLKGDNITL+
Sbjct: 66 VELGRILLKGDNITLI 81
>gi|353227274|emb|CCA77787.1| probable small nuclear ribonucleoprotein E [Piriformospora indica
DSM 11827]
Length = 87
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 22/82 (26%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S + R+M QPIN+IF+ LQ GFDEYMN+V+DDA EV+
Sbjct: 2 SGRQTRVMVQPINVIFKHLQQKTKVVIWLYDNVEMRIEGRIIGFDEYMNVVMDDATEVYT 61
Query: 42 KKNTRK-PLGRILLKGDNITLM 62
K+ PLGRILLKG+NITL+
Sbjct: 62 KEGRPSVPLGRILLKGENITLI 83
>gi|397599586|gb|EJK57461.1| hypothetical protein THAOC_22489 [Thalassiosira oceanica]
Length = 86
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 45/83 (54%), Gaps = 21/83 (25%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M KV+++MT PIN+IF LQ GFDEYMN VLD A EV
Sbjct: 1 MPPRKVKKVMTLPINVIFGHLQKKTRVKIWLYEDTRMSIEGQIIGFDEYMNFVLDSATEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
+K R +GRILLKGD ITLM
Sbjct: 61 DMKTGKRTDVGRILLKGDAITLM 83
>gi|281204021|gb|EFA78217.1| hypothetical protein PPL_08867 [Polysphondylium pallidum PN500]
Length = 80
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 11/76 (14%)
Query: 1 MASTKVQRIMTQPINL--IFRFLQS---------GFDEYMNLVLDDAEEVHIKKNTRKPL 49
M+ + + +M +P+++ I F Q+ G DEYMNLVLD+A E+ +KK TRKPL
Sbjct: 1 MSEYRQKSVMLKPVSVVQIMLFEQTDLRIEGVIIGLDEYMNLVLDNAFEISMKKKTRKPL 60
Query: 50 GRILLKGDNITLMMNT 65
G+ILLKGDNITL+ +
Sbjct: 61 GQILLKGDNITLVYDV 76
>gi|119589573|gb|EAW69167.1| hCG23490, isoform CRA_b [Homo sapiens]
Length = 52
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 34/39 (87%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFDEYMNLVLDDAEE+H K +RK LGRI+LKG NITL+
Sbjct: 9 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLL 47
>gi|403411704|emb|CCL98404.1| predicted protein [Fibroporia radiculosa]
Length = 87
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 22/82 (26%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S + QR+M QPIN+IF+ LQ GFDE+MN+V+D+A EV++
Sbjct: 2 SGRQQRVMVQPINVIFKNLQQRTKVVIWLYDNIEMRIEGRIIGFDEFMNVVIDEATEVYV 61
Query: 42 K-KNTRKPLGRILLKGDNITLM 62
K ++ LGRILLKGDNITL+
Sbjct: 62 KDAKPQRELGRILLKGDNITLI 83
>gi|213407688|ref|XP_002174615.1| Sm snRNP core protein Sme1 [Schizosaccharomyces japonicus yFS275]
gi|212002662|gb|EEB08322.1| Sm snRNP core protein Sme1 [Schizosaccharomyces japonicus yFS275]
Length = 84
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 22/81 (27%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S +VQ++M PIN IF+ LQ GFDE+MN+VLDDA +V
Sbjct: 2 SGRVQKVMLPPINFIFKLLQQHTPVQIWLYEQQTHRLEGLIRGFDEFMNIVLDDAVQVD- 60
Query: 42 KKNTRKPLGRILLKGDNITLM 62
KN ++ LGRILLKGDNITL+
Sbjct: 61 DKNRKRALGRILLKGDNITLI 81
>gi|209882013|ref|XP_002142444.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209558050|gb|EEA08095.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 91
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 23/84 (27%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
+ Q+IMTQPIN IFR S GFDEYMN+VLDD EV+ KK
Sbjct: 6 RTQKIMTQPINQIFRLFTSKQRVQIWLYDHPELSLEGKIQGFDEYMNIVLDDVTEVYTKK 65
Query: 44 N--TRKPLGRILLKGDNITLMMNT 65
+ +R+ +GR++L+G+NI+L+ +
Sbjct: 66 DEVSRRDIGRLMLRGENISLISDA 89
>gi|150865716|ref|XP_001385048.2| hypothetical protein PICST_47366 [Scheffersomyces stipitis CBS
6054]
gi|149386972|gb|ABN67019.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 90
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 23/85 (27%)
Query: 1 MASTKV--QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAE 37
M+S K ++ M PINLIF++LQ GFDE+MN+V+DDA
Sbjct: 1 MSSHKATGKKSMLPPINLIFKYLQQQSPVTIWLYEQTQSRIQGKIRGFDEFMNIVIDDAV 60
Query: 38 EVHIKKNTRKPLGRILLKGDNITLM 62
E+ K +++ LGRILLKGDNITL+
Sbjct: 61 EISTKDGSKEELGRILLKGDNITLI 85
>gi|448534499|ref|XP_003870814.1| hypothetical protein CORT_0F04610 [Candida orthopsilosis Co
90-125]
gi|380355169|emb|CCG24686.1| hypothetical protein CORT_0F04610 [Candida orthopsilosis]
Length = 86
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 48/83 (57%), Gaps = 23/83 (27%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+S V + PINLIF+FLQ GFDEYMNLV+D+AEE+
Sbjct: 1 MSSKSVSKTNLPPINLIFKFLQQQSLVTIWLYEKSHSRIQGKIQGFDEYMNLVIDEAEEI 60
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
K T PLG++LLKG+NITL+
Sbjct: 61 VNGKKT--PLGKLLLKGENITLI 81
>gi|442758563|gb|JAA71440.1| Putative small nuclear ribonucleoprotein e [Ixodes ricinus]
Length = 82
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 36/42 (85%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 65
GF EYMNLVLDDAEE++ K RK +GRILLKG+NITL+++T
Sbjct: 38 GFGEYMNLVLDDAEEIYTKTKQRKQVGRILLKGENITLIVST 79
>gi|331212255|ref|XP_003307397.1| small nuclear ribonucleoprotein E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309297800|gb|EFP74391.1| small nuclear ribonucleoprotein E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 98
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 33/93 (35%)
Query: 3 STKVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEVHI 41
S + QR+M QPIN+IF+ LQ+G FDE+MN+VLD+A EV +
Sbjct: 2 SGRQQRVMVQPINVIFKHLQAGQLVHIWLYDNTEFRLEGKIIGFDEFMNVVLDNASEVWV 61
Query: 42 K------------KNTRKPLGRILLKGDNITLM 62
K K R LGR+LLKG+NITL+
Sbjct: 62 KSKKGTPHREAVEKGARVSLGRLLLKGENITLI 94
>gi|294659407|ref|XP_461772.2| DEHA2G05192p [Debaryomyces hansenii CBS767]
gi|199433937|emb|CAG90229.2| DEHA2G05192p [Debaryomyces hansenii CBS767]
Length = 90
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 21/77 (27%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT 45
++ M PINLIF++LQ GFDE+MN+V+DDA EV+ +
Sbjct: 9 KKTMIPPINLIFKYLQQQSPVTIWLYEQTHSRIQGKIRGFDEFMNVVIDDAMEVNTNDGS 68
Query: 46 RKPLGRILLKGDNITLM 62
++ LGRILLKGDNITL+
Sbjct: 69 KEELGRILLKGDNITLI 85
>gi|400599169|gb|EJP66873.1| small nuclear ribonucleoprotein E [Beauveria bassiana ARSEF 2860]
Length = 95
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 26/82 (31%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI-----K 42
++ PIN+IF+ LQS GFDE+MNLVLDDA EV
Sbjct: 11 VLLPPINMIFKLLQSNATVSVWLYEQLGIRVEGKIRGFDEFMNLVLDDAVEVRQITKTND 70
Query: 43 KNTRKPLGRILLKGDNITLMMN 64
K TR+PLG+ILLKGDN++L+ N
Sbjct: 71 KETRRPLGQILLKGDNVSLIQN 92
>gi|448118085|ref|XP_004203416.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|448120526|ref|XP_004203999.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|359384284|emb|CCE78988.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|359384867|emb|CCE78402.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 21/74 (28%)
Query: 10 MTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKP 48
M PINLIF++LQ GFDE+MN+V+DDA+E+ + + +
Sbjct: 12 MLPPINLIFKYLQQQSLVTIWLFEQTQSRIQGKIRGFDEFMNIVIDDAKEISTEDGSSEA 71
Query: 49 LGRILLKGDNITLM 62
LGRILLKGDNITL+
Sbjct: 72 LGRILLKGDNITLI 85
>gi|443894424|dbj|GAC71772.1| small nuclear ribonucleoprotein E [Pseudozyma antarctica T-34]
Length = 86
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 22/77 (28%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTR 46
++ QPIN+IFR LQ GFDE+MN+ L DAEEV +KK+ +
Sbjct: 6 KVSVQPINIIFRHLQQQTRVSLWLYDNVDFRIEGKIIGFDEFMNVTLADAEEVWLKKDHK 65
Query: 47 K-PLGRILLKGDNITLM 62
+ LGRILLKGDNITL+
Sbjct: 66 RVELGRILLKGDNITLI 82
>gi|358399324|gb|EHK48667.1| hypothetical protein TRIATDRAFT_298071 [Trichoderma atroviride
IMI 206040]
Length = 96
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 26/82 (31%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI-----K 42
++ PIN+IF+ LQS GFDE+MNLV+DDA EV
Sbjct: 12 VLLPPINMIFKLLQSNATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 43 KNTRKPLGRILLKGDNITLMMN 64
K +RKPLG+ILLKGDN++L+ N
Sbjct: 72 KESRKPLGQILLKGDNVSLIQN 93
>gi|190346690|gb|EDK38837.2| hypothetical protein PGUG_02935 [Meyerozyma guilliermondii ATCC
6260]
Length = 84
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 23/74 (31%)
Query: 10 MTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKP 48
M PIN+IF+FLQ GFDE+MN+V+DDA V I K++ P
Sbjct: 8 MLPPINVIFKFLQQQVPVTIWLYEQTQSKIQGRIRGFDEFMNIVIDDA--VEILKDSEVP 65
Query: 49 LGRILLKGDNITLM 62
LGRILLKGDNITL+
Sbjct: 66 LGRILLKGDNITLI 79
>gi|146418481|ref|XP_001485206.1| hypothetical protein PGUG_02935 [Meyerozyma guilliermondii ATCC
6260]
Length = 84
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 23/74 (31%)
Query: 10 MTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKP 48
M PIN+IF+FLQ GFDE+MN+V+DDA V I K++ P
Sbjct: 8 MLPPINVIFKFLQQQVPVTIWLYEQTQLKIQGRIRGFDEFMNIVIDDA--VEILKDSEVP 65
Query: 49 LGRILLKGDNITLM 62
LGRILLKGDNITL+
Sbjct: 66 LGRILLKGDNITLI 79
>gi|45478130|gb|AAS66236.1| LRRGT00145 [Rattus norvegicus]
Length = 428
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 36/61 (59%), Gaps = 21/61 (34%)
Query: 5 KVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQSG FDEYMNLV DDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQSGSRIQVWLCEQVDAQIEGCIIGFDEYMNLVSDDAEEIHSKT 68
Query: 44 N 44
N
Sbjct: 69 N 69
>gi|60692530|gb|AAX30632.1| SJCHGC06135 protein [Schistosoma japonicum]
gi|226470320|emb|CAX70440.1| Small nuclear ribonucleoprotein E [Schistosoma japonicum]
gi|226485471|emb|CAX75155.1| Small nuclear ribonucleoprotein E [Schistosoma japonicum]
gi|226485473|emb|CAX75156.1| Small nuclear ribonucleoprotein E [Schistosoma japonicum]
gi|226485475|emb|CAX75157.1| Small nuclear ribonucleoprotein E [Schistosoma japonicum]
Length = 89
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
+ + + PI +++ FLQ GFDEYMNLVL DA E H+K
Sbjct: 7 RSHKAIQPPIGVVYNFLQKKARVRVWLYEQCNLRIEGVIIGFDEYMNLVLADACERHMKS 66
Query: 44 NTRKPLGRILLKGDNITLM 62
+KPLGRILLKG+ ITL+
Sbjct: 67 GAKKPLGRILLKGETITLV 85
>gi|340518388|gb|EGR48629.1| predicted protein [Trichoderma reesei QM6a]
Length = 96
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 26/82 (31%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI-----K 42
++ PIN+IF+ LQ+ GFDE+MNLV+DDA EV
Sbjct: 12 VLLPPINMIFKLLQNNATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 43 KNTRKPLGRILLKGDNITLMMN 64
K TRKPLG+ILLKGDN++L+ N
Sbjct: 72 KETRKPLGQILLKGDNVSLIQN 93
>gi|146182714|ref|XP_001471048.1| Small nuclear ribonucleoprotein E, putative [Tetrahymena
thermophila]
gi|146143746|gb|EDK31351.1| Small nuclear ribonucleoprotein E, putative [Tetrahymena
thermophila SB210]
Length = 140
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 21/83 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S K + +T P+ IF FLQ GFDEYMN+VLD+ EV
Sbjct: 2 SKKQTKTITNPLTTIFGFLQKQVRVQIWLFENTEIKLEGKIIGFDEYMNMVLDETSEVDC 61
Query: 42 KKNTRKPLGRILLKGDNITLMMN 64
K N ++ +GRILLKG+NITL+ N
Sbjct: 62 KTNQKREIGRILLKGENITLIRN 84
>gi|358383788|gb|EHK21450.1| hypothetical protein TRIVIDRAFT_91240 [Trichoderma virens Gv29-8]
Length = 96
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 26/82 (31%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI-----K 42
++ PIN+IF+ LQ+ GFDE+MNLV+DDA EV
Sbjct: 12 VLLPPINMIFKLLQNNATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 43 KNTRKPLGRILLKGDNITLMMN 64
K TRKPLG+ILLKGDN++L+ N
Sbjct: 72 KETRKPLGQILLKGDNVSLIQN 93
>gi|344299952|gb|EGW30292.1| hypothetical protein SPAPADRAFT_63138 [Spathaspora passalidarum
NRRL Y-27907]
Length = 87
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 21/81 (25%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S+K ++ PINLIF+FLQ GFDE+MN+V+DDA E+
Sbjct: 2 SSKQKKATLPPINLIFKFLQHQSQVTIWLYEQTQSRIQGKIRGFDEFMNIVIDDAVEIST 61
Query: 42 KKNTRKPLGRILLKGDNITLM 62
+ LGRILLKGDNITL+
Sbjct: 62 VTGRKDELGRILLKGDNITLI 82
>gi|388853510|emb|CCF52909.1| probable small nuclear ribonucleoprotein E [Ustilago hordei]
Length = 86
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 22/77 (28%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTR 46
++ QPIN+IFR LQ GFDE+MN+ L DAEEV KK+ +
Sbjct: 6 KVSVQPINVIFRHLQQQTRVSLWLYDNIDFRIEGKIIGFDEFMNVTLADAEEVWTKKDNK 65
Query: 47 K-PLGRILLKGDNITLM 62
LGRILLKGDNITL+
Sbjct: 66 HVELGRILLKGDNITLI 82
>gi|46111729|ref|XP_382922.1| hypothetical protein FG02746.1 [Gibberella zeae PH-1]
gi|408389795|gb|EKJ69221.1| hypothetical protein FPSE_10604 [Fusarium pseudograminearum
CS3096]
Length = 96
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 26/84 (30%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI-----K 42
++ PIN IF+ LQS GFDE+MNLV+DDA EV
Sbjct: 12 VLVPPINFIFKLLQSHATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 43 KNTRKPLGRILLKGDNITLMMNTG 66
K +R+PLG+ILLKGDN++L+ +
Sbjct: 72 KESRRPLGQILLKGDNVSLIQSAA 95
>gi|390341850|ref|XP_003725544.1| PREDICTED: small nuclear ribonucleoprotein E-like
[Strongylocentrotus purpuratus]
Length = 48
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/36 (80%), Positives = 31/36 (86%)
Query: 29 MNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 64
MN+VLDDAEE H K TRKPLGRILLKGDNITL+ N
Sbjct: 1 MNVVLDDAEEYHKKNKTRKPLGRILLKGDNITLIQN 36
>gi|405122118|gb|AFR96885.1| small nuclear ribonucleoprotein E [Cryptococcus neoformans var.
grubii H99]
Length = 92
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 28/84 (33%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH----- 40
+++M QPIN+IF LQ GFDE+MN+VLDDAEEV+
Sbjct: 4 RKVMVQPINIIFSHLQKHNRVAVWLYDNNDFRIEAYIIGFDEFMNVVLDDAEEVYDCGAK 63
Query: 41 --IKKNTRKPLGRILLKGDNITLM 62
+ R+ LGRILLKGDNITL+
Sbjct: 64 PGKEVPPRRELGRILLKGDNITLI 87
>gi|440636915|gb|ELR06834.1| hypothetical protein GMDG_08125 [Geomyces destructans 20631-21]
Length = 98
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 26/80 (32%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV-HIKKN-- 44
++ PIN+IF+ LQ+ GFDE+MNLV+DDA EV I K
Sbjct: 14 VLLPPINMIFKLLQTNSTVSIWLYEQIAIRIEGKIRGFDEFMNLVIDDAIEVGQITKTNE 73
Query: 45 --TRKPLGRILLKGDNITLM 62
TR+PLGRILLKGDN++L+
Sbjct: 74 TETRRPLGRILLKGDNVSLI 93
>gi|321262372|ref|XP_003195905.1| small nuclear ribonucleoprotein E [Cryptococcus gattii WM276]
gi|317462379|gb|ADV24118.1| Small nuclear ribonucleoprotein E, putative [Cryptococcus gattii
WM276]
Length = 92
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 28/84 (33%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH----- 40
+++M QPIN+IF LQ GFDE+MN+VLDDAEEV+
Sbjct: 4 RKVMVQPINIIFSHLQKHNRVAIWLYDNNEFRIEAYIIGFDEFMNVVLDDAEEVYDCGAK 63
Query: 41 --IKKNTRKPLGRILLKGDNITLM 62
+ R+ LGRILLKGDNITL+
Sbjct: 64 PGKEVPPRRELGRILLKGDNITLI 87
>gi|71015586|ref|XP_758826.1| hypothetical protein UM02679.1 [Ustilago maydis 521]
gi|46098616|gb|EAK83849.1| hypothetical protein UM02679.1 [Ustilago maydis 521]
Length = 136
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 41/75 (54%), Gaps = 22/75 (29%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK-N 44
++ QPIN+IFR LQ GFDE+MN+ L DAEEV KK N
Sbjct: 5 SKVSVQPINIIFRHLQQQTRVSLWLYDNVDFRIEGKIIGFDEFMNVTLADAEEVWTKKDN 64
Query: 45 TRKPLGRILLKGDNI 59
R LGRILLKGDNI
Sbjct: 65 KRVELGRILLKGDNI 79
>gi|346324729|gb|EGX94326.1| small nuclear ribonucleoprotein E [Cordyceps militaris CM01]
Length = 141
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 26/85 (30%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI-----K 42
++ PIN+IF+ LQ+ GFDE+MNLVLDDA EV
Sbjct: 57 VLLPPINMIFKLLQTNSTVSVWLYEQLGIRIEGKIRGFDEFMNLVLDDAVEVRQITKTND 116
Query: 43 KNTRKPLGRILLKGDNITLMMNTGK 67
K +R+PLG+ILLKGDN++L+ N +
Sbjct: 117 KESRRPLGQILLKGDNVSLIQNLSE 141
>gi|58271500|ref|XP_572906.1| small nuclear ribonucleoprotein E [Cryptococcus neoformans var.
neoformans JEC21]
gi|134115058|ref|XP_773827.1| hypothetical protein CNBH2790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256455|gb|EAL19180.1| hypothetical protein CNBH2790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229165|gb|AAW45599.1| small nuclear ribonucleoprotein E, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 92
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 28/84 (33%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH----- 40
+++M QPIN+IF LQ GFDE+MN+VLDDAEEV+
Sbjct: 4 RKVMVQPINIIFSHLQKHNRVAIWLYDNNDFRIEAYIIGFDEFMNVVLDDAEEVYDCGAK 63
Query: 41 --IKKNTRKPLGRILLKGDNITLM 62
+ R+ LGRILLKGDNITL+
Sbjct: 64 PGKEVPPRRELGRILLKGDNITLI 87
>gi|320589574|gb|EFX02030.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 96
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 26/80 (32%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV-HIKKN-- 44
++ PIN+IF+ LQS GFDE++NLVLDDA V I K
Sbjct: 12 VLLPPINMIFKLLQSHATVSVWLYEQLSFRIEGKIRGFDEFLNLVLDDAVVVGQITKTQE 71
Query: 45 --TRKPLGRILLKGDNITLM 62
TRKPLGRILLKGDNI+L+
Sbjct: 72 EETRKPLGRILLKGDNISLI 91
>gi|340960769|gb|EGS21950.1| small nuclear ribonucleoprotein E-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 98
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 26/82 (31%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT 45
+R++ PIN +FR LQ GFDE+MNLV+DDA E+ + T
Sbjct: 10 RRVLLPPINFLFRLLQQRTPVQIWLYEQLAIRITGVIRGFDEFMNLVIDDAVEIKLSPKT 69
Query: 46 -----RKPLGRILLKGDNITLM 62
++PLG+ILLKGDNI+L+
Sbjct: 70 NEPESKRPLGQILLKGDNISLI 91
>gi|302891819|ref|XP_003044791.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256725716|gb|EEU39078.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 96
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 26/82 (31%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI-----K 42
++ PIN IF+ LQS GFDE+MNLV+DDA EV
Sbjct: 12 VLLLPINFIFKLLQSHATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 43 KNTRKPLGRILLKGDNITLMMN 64
K TR+PLG+ILLKGDN++L+ +
Sbjct: 72 KETRRPLGQILLKGDNVSLIQS 93
>gi|330802344|ref|XP_003289178.1| hypothetical protein DICPUDRAFT_35231 [Dictyostelium purpureum]
gi|325080754|gb|EGC34296.1| hypothetical protein DICPUDRAFT_35231 [Dictyostelium purpureum]
Length = 77
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 4 TKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMM 63
T+VQ ++ + ++ + + G DEYMNLVLD+A E +KK T+KPLG+ILLKGDNI ++
Sbjct: 10 TEVQIMLYENVDTRIQGVIIGLDEYMNLVLDNAFEFSLKKKTKKPLGQILLKGDNILMVF 69
Query: 64 NTG 66
Sbjct: 70 EAA 72
>gi|389633501|ref|XP_003714403.1| sm snRNP core protein Sme1 [Magnaporthe oryzae 70-15]
gi|351646736|gb|EHA54596.1| sm snRNP core protein Sme1 [Magnaporthe oryzae 70-15]
Length = 95
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 26/83 (31%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH--IKKN 44
+I+ PIN IF+ LQS GFDE+MNLV+DDA EV K N
Sbjct: 11 KILLPPINCIFKLLQSHATVSIWLYEQLGIRIEGKIRGFDEFMNLVIDDAIEVKQITKDN 70
Query: 45 T---RKPLGRILLKGDNITLMMN 64
T R+PLG+ILLKGDN++L+ +
Sbjct: 71 TEEKRRPLGQILLKGDNVSLIQS 93
>gi|241956256|ref|XP_002420848.1| small nuclear ribonucleoprotein E (snRNP-E), putative [Candida
dubliniensis CD36]
gi|223644191|emb|CAX41000.1| small nuclear ribonucleoprotein E (snRNP-E), putative [Candida
dubliniensis CD36]
Length = 86
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 23/83 (27%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+S + ++ PINLIF+FLQ GFDE+MN+V+DDA V
Sbjct: 1 MSSKQTKQTNLPPINLIFKFLQQQSVVTIWLYEQTQSRIQGKIRGFDEFMNIVIDDA--V 58
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
+ + LGRILLKGDNITL+
Sbjct: 59 ELSNGKKSELGRILLKGDNITLI 81
>gi|344231123|gb|EGV63005.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 90
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 42/76 (55%), Gaps = 21/76 (27%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTR 46
R M PI+ IF LQ GFDE+MN+VLDDA EV K ++
Sbjct: 10 RAMHTPIHTIFTCLQQRLTVSVWLYEQTQSRIEGKIRGFDEFMNIVLDDAIEVSTKDGSK 69
Query: 47 KPLGRILLKGDNITLM 62
+ LGRI+LKGDNITL+
Sbjct: 70 EDLGRIMLKGDNITLI 85
>gi|67478492|ref|XP_654638.1| small nuclear ribonucleoprotein [Entamoeba histolytica HM-1:IMSS]
gi|56471705|gb|EAL49252.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407040392|gb|EKE40106.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449708080|gb|EMD47607.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
KU27]
Length = 89
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 23 SGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
SGFD+Y+NLVL D EEV++K NTR+ +G ILLKG+NI+++
Sbjct: 44 SGFDQYINLVLTDTEEVYLKTNTRRKIGTILLKGENISVI 83
>gi|167379643|ref|XP_001735222.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165902891|gb|EDR28600.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 84
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 23 SGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
SGFD+Y+NLVL D EEV++K NTR+ +G ILLKG+NI+++
Sbjct: 39 SGFDQYINLVLTDTEEVYLKTNTRRKIGTILLKGENISVI 78
>gi|255727532|ref|XP_002548692.1| small nuclear ribonucleoprotein E [Candida tropicalis MYA-3404]
gi|240134616|gb|EER34171.1| small nuclear ribonucleoprotein E [Candida tropicalis MYA-3404]
Length = 86
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 23/83 (27%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+S + ++ PINLIF+FLQ GFDE+MN+V+DDA V
Sbjct: 1 MSSKQGKQSNLPPINLIFKFLQQQSLVNIWLYEQTQSRIQGKIRGFDEFMNIVIDDA--V 58
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
I ++ LGRILLKGDNITL+
Sbjct: 59 EICNGNKEELGRILLKGDNITLI 81
>gi|149235887|ref|XP_001523821.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452197|gb|EDK46453.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 86
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 23/83 (27%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+S +++ PINLIF+FLQ GFDE+MNLV+D+AEE+
Sbjct: 1 MSSQSLKKSNLPPINLIFKFLQQQSLVTIWLYEQIDYRIQGKILGFDEFMNLVVDEAEEL 60
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
K T+ LGR+LLKGD ITL+
Sbjct: 61 ADGKRTK--LGRLLLKGDTITLI 81
>gi|322696736|gb|EFY88524.1| LSM domain-containing protein [Metarhizium acridum CQMa 102]
Length = 96
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 26/80 (32%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI-----K 42
++ PIN+IF+ LQS GFDE+MNLV+DDA EV
Sbjct: 12 VLLPPINMIFKLLQSNATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVSQVTKTND 71
Query: 43 KNTRKPLGRILLKGDNITLM 62
K TRK LG+ILLKGDN++L+
Sbjct: 72 KETRKQLGQILLKGDNVSLI 91
>gi|296411223|ref|XP_002835333.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629111|emb|CAZ79490.1| unnamed protein product [Tuber melanosporum]
Length = 93
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 25/81 (30%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIK----K 43
++ PIN IF+ LQS GFDE+MNLV+DDA EV +K +
Sbjct: 12 VLLPPINFIFKLLQSHATVQIWLYEQLAIRIEGKIRGFDEFMNLVIDDAVEVKLKTKDEE 71
Query: 44 NTRKPLGRILLKGDNITLMMN 64
+R+ LG+ILLKGDN++L+ +
Sbjct: 72 ESRRELGQILLKGDNVSLIQS 92
>gi|126647281|ref|XP_001388059.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|126117147|gb|EAZ51247.1| small nuclear ribonucleoprotein, putative [Cryptosporidium parvum
Iowa II]
Length = 92
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 23/84 (27%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
K Q++M QPIN IF S GFDEYMN+VLD A EV+ KK
Sbjct: 8 KTQKMMLQPINQIFHLFTSKQRVQIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKK 67
Query: 44 NTRK--PLGRILLKGDNITLMMNT 65
R+ +G++LL+G+NI+L+
Sbjct: 68 EVRRETSVGQLLLRGENISLICEC 91
>gi|366996280|ref|XP_003677903.1| hypothetical protein NCAS_0H02460 [Naumovozyma castellii CBS
4309]
gi|342303773|emb|CCC71556.1| hypothetical protein NCAS_0H02460 [Naumovozyma castellii CBS
4309]
Length = 92
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 28/86 (32%)
Query: 7 QRIMTQPINLIFRFLQ---------------------SGFDEYMNLVLDDAEEVHIKKNT 45
+ M PIN IF FLQ SGFDE+MN+V+DDA E+ + T
Sbjct: 5 SKTMVPPINCIFNFLQQQTTVTFWLFEQVGTRIRGKVSGFDEFMNVVIDDAIEIPVDAKT 64
Query: 46 RKP-------LGRILLKGDNITLMMN 64
K LGRILLKGDNITL+ +
Sbjct: 65 GKELVSKGTKLGRILLKGDNITLITS 90
>gi|402079438|gb|EJT74703.1| sm snRNP core protein Sme1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 94
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 26/80 (32%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH--IKKNT 45
I+ PIN IF+ LQS GFDE+MNLVLDDA E+ K+N
Sbjct: 12 ILLPPINFIFKLLQSHAPVQIWLYEQLGIRIEGKIRGFDEFMNLVLDDAVEIKQVTKENP 71
Query: 46 ---RKPLGRILLKGDNITLM 62
R+PLG+ILLKGDN++L+
Sbjct: 72 EEKRRPLGQILLKGDNVSLI 91
>gi|392574635|gb|EIW67771.1| hypothetical protein TREMEDRAFT_69713 [Tremella mesenterica DSM
1558]
Length = 93
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 28/84 (33%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK-- 43
+++ QPIN+IF LQ GFDE+MNLVLD+AEEV+
Sbjct: 4 RKVAVQPINVIFSHLQKHTRITIWLYDSNEFRIEAFIVGFDEFMNLVLDEAEEVYDCAAK 63
Query: 44 -----NTRKPLGRILLKGDNITLM 62
R+ LGRILLKGDNITL+
Sbjct: 64 PGKPVKPRRELGRILLKGDNITLI 87
>gi|429850739|gb|ELA25982.1| small nuclear ribonucleoprotein [Colletotrichum gloeosporioides
Nara gc5]
Length = 96
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 26/81 (32%)
Query: 13 PINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH--IKKN---TR 46
PIN IFR LQ GFDE+MNLV+DDA EV K N +R
Sbjct: 16 PINFIFRLLQQHTTVQIWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQVTKTNPEESR 75
Query: 47 KPLGRILLKGDNITLMMNTGK 67
+PLG+ILLKGDN++L+ + +
Sbjct: 76 RPLGQILLKGDNVSLIQSVSE 96
>gi|347838352|emb|CCD52924.1| similar to small nuclear ribonucleoprotein e [Botryotinia
fuckeliana]
Length = 94
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 25/84 (29%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI---- 41
++++ PIN IF+ LQ GFDE+MNLVLDDA EV
Sbjct: 9 RKVLLPPINFIFKLLQQHTPVSIWLYEQLGIRIEGKIRGFDEFMNLVLDDAVEVRQATKD 68
Query: 42 KKNTRKPLGRILLKGDNITLMMNT 65
K+ +R+ LG+ILLKGDN++L+ +
Sbjct: 69 KEESRRALGQILLKGDNVSLIQSA 92
>gi|255717787|ref|XP_002555174.1| KLTH0G03102p [Lachancea thermotolerans]
gi|238936558|emb|CAR24737.1| KLTH0G03102p [Lachancea thermotolerans CBS 6340]
Length = 94
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 44/83 (53%), Gaps = 28/83 (33%)
Query: 8 RIMTQPINLIFRFLQ---------------------SGFDEYMNLVLDDAEEVHI--KKN 44
++ PIN IF FLQ SGFDE+MN+V+DDA E+ I K
Sbjct: 7 KVTVPPINCIFNFLQQQTLVNFWLFEQVQTRIRGRISGFDEFMNVVIDDASEIPIDTKTG 66
Query: 45 TRKP-----LGRILLKGDNITLM 62
+ P LGRILLKGDNITL+
Sbjct: 67 SELPDQAVKLGRILLKGDNITLI 89
>gi|397624778|gb|EJK67508.1| hypothetical protein THAOC_11446 [Thalassiosira oceanica]
Length = 222
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/39 (69%), Positives = 29/39 (74%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFDEYMN VLD A EV +K R +GRILLKGD ITLM
Sbjct: 181 GFDEYMNFVLDSATEVDMKTGKRTDVGRILLKGDAITLM 219
>gi|156045543|ref|XP_001589327.1| hypothetical protein SS1G_09962 [Sclerotinia sclerotiorum 1980]
gi|154694355|gb|EDN94093.1| hypothetical protein SS1G_09962 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 94
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 25/84 (29%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI---- 41
++++ PIN IF+ LQ GFDE+MNLVLDDA EV
Sbjct: 9 RKVLLPPINFIFKLLQQHTPVSIWLYEQLGIRIEGKIRGFDEFMNLVLDDAVEVKQATKD 68
Query: 42 KKNTRKPLGRILLKGDNITLMMNT 65
K +R+ LG+ILLKGDN++L+ +
Sbjct: 69 KAESRRALGQILLKGDNVSLIQSA 92
>gi|238482745|ref|XP_002372611.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus flavus
NRRL3357]
gi|220700661|gb|EED56999.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus flavus
NRRL3357]
Length = 95
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 25/80 (31%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT- 45
+ + PI+ IF+ LQ GFDE+MNLV+DDA EV + T
Sbjct: 12 KTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRLATKTE 71
Query: 46 ---RKPLGRILLKGDNITLM 62
R+PLG+ILLKGDN++L+
Sbjct: 72 EEKRRPLGQILLKGDNVSLI 91
>gi|317139460|ref|XP_003189167.1| small nuclear ribonucleoprotein E [Aspergillus oryzae RIB40]
Length = 95
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 25/80 (31%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT- 45
+ + PI+ IF+ LQ GFDE+MNLV+DDA EV + T
Sbjct: 12 KTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRLATKTG 71
Query: 46 ---RKPLGRILLKGDNITLM 62
R+PLG+ILLKGDN++L+
Sbjct: 72 EEKRRPLGQILLKGDNVSLI 91
>gi|115399850|ref|XP_001215514.1| small nuclear ribonucleoprotein E [Aspergillus terreus NIH2624]
gi|114191180|gb|EAU32880.1| small nuclear ribonucleoprotein E [Aspergillus terreus NIH2624]
Length = 94
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 25/82 (30%)
Query: 6 VQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKN 44
++ + PI+ IF+ LQ GFDE+MNLV+DDA EV +
Sbjct: 9 ARKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRMATK 68
Query: 45 T----RKPLGRILLKGDNITLM 62
T R+PLG+ILLKGDN++L+
Sbjct: 69 TDEEKRRPLGQILLKGDNVSLI 90
>gi|119483034|ref|XP_001261545.1| LSM domain protein [Neosartorya fischeri NRRL 181]
gi|119409700|gb|EAW19648.1| LSM domain protein [Neosartorya fischeri NRRL 181]
Length = 95
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 25/75 (33%)
Query: 13 PINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT----RK 47
PI+ IF+ LQ GFDE+MNLV+DDA EV + T R+
Sbjct: 17 PIHFIFKLLQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRMATKTDEEKRR 76
Query: 48 PLGRILLKGDNITLM 62
PLG+ILLKGDN++L+
Sbjct: 77 PLGQILLKGDNVSLI 91
>gi|342874544|gb|EGU76546.1| hypothetical protein FOXB_12920 [Fusarium oxysporum Fo5176]
gi|388497428|gb|AFK36780.1| unknown [Lotus japonicus]
Length = 96
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 5/49 (10%)
Query: 24 GFDEYMNLVLDDAEEVHI-----KKNTRKPLGRILLKGDNITLMMNTGK 67
GFDE+MNLV+D+A EV +K TR+PLG+I+LKGDN++L+ N K
Sbjct: 48 GFDEFMNLVIDEAVEVKQVTKTNEKETRRPLGQIMLKGDNVSLIQNVSK 96
>gi|70986850|ref|XP_748912.1| small nuclear ribonucleoprotein SmE [Aspergillus fumigatus Af293]
gi|66846542|gb|EAL86874.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
fumigatus Af293]
gi|159123319|gb|EDP48439.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
fumigatus A1163]
Length = 95
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 25/80 (31%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT- 45
+ + PI+ IF+ LQ GFDE+MNLV+DDA EV + T
Sbjct: 12 KTLLAPIHFIFKLLQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVKMATKTD 71
Query: 46 ---RKPLGRILLKGDNITLM 62
R+PLG+ILLKGDN++L+
Sbjct: 72 EEKRRPLGQILLKGDNVSLI 91
>gi|121711637|ref|XP_001273434.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
clavatus NRRL 1]
gi|119401585|gb|EAW12008.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
clavatus NRRL 1]
Length = 95
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 25/75 (33%)
Query: 13 PINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT----RK 47
PI+ IF+ LQ GFDE+MNLV+DDA EV + T R+
Sbjct: 17 PIHFIFKLLQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRMATKTDEEKRR 76
Query: 48 PLGRILLKGDNITLM 62
PLG+ILLKGDN++L+
Sbjct: 77 PLGQILLKGDNVSLI 91
>gi|259480327|tpe|CBF71356.1| TPA: small nuclear ribonucleoprotein SmE, putative
(AFU_orthologue; AFUA_7G05980) [Aspergillus nidulans
FGSC A4]
Length = 94
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 25/82 (30%)
Query: 6 VQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI--- 41
++ + PI+ IF+ LQ GFDE+MNLV+DDA EV +
Sbjct: 9 ARKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLATK 68
Query: 42 -KKNTRKPLGRILLKGDNITLM 62
++ R+PLG+ILLKGDN++L+
Sbjct: 69 SEEEKRRPLGQILLKGDNVSLI 90
>gi|396458899|ref|XP_003834062.1| similar to small nuclear ribonucleoprotein E [Leptosphaeria
maculans JN3]
gi|312210611|emb|CBX90697.1| similar to small nuclear ribonucleoprotein E [Leptosphaeria
maculans JN3]
Length = 94
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 25/80 (31%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK--- 43
+++ PIN IF+ LQS GFDE+MNLV+DDA EV + K
Sbjct: 11 KVLLPPINFIFKLLQSRATISVWLYENLGLRIEGKLRGFDEFMNLVIDDAVEVTLAKKDA 70
Query: 44 -NTRKPLGRILLKGDNITLM 62
R+ +G+ILLKGDNI+L+
Sbjct: 71 PEERRKVGQILLKGDNISLI 90
>gi|255943851|ref|XP_002562693.1| Pc20g01340 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587428|emb|CAP85463.1| Pc20g01340 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 100
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 25/81 (30%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT 45
++ + PI+ IF LQ GFDE+MNLV+DDA EV + T
Sbjct: 17 RKTLLAPIHFIFSLLQKRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLATKT 76
Query: 46 ----RKPLGRILLKGDNITLM 62
R+PLG+ILLKGDN++L+
Sbjct: 77 EEEKRRPLGQILLKGDNVSLI 97
>gi|189210563|ref|XP_001941613.1| small nuclear ribonucleoprotein E [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330923223|ref|XP_003300153.1| hypothetical protein PTT_11315 [Pyrenophora teres f. teres 0-1]
gi|187977706|gb|EDU44332.1| small nuclear ribonucleoprotein E [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311325858|gb|EFQ91754.1| hypothetical protein PTT_11315 [Pyrenophora teres f. teres 0-1]
Length = 93
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 25/80 (31%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK--- 43
+++ PIN IF+ LQS GFDE+MNLV+DDA EV + K
Sbjct: 11 KVLLPPINFIFKLLQSRATISVWLYENLGMRIEGKLRGFDEFMNLVIDDAIEVKLAKKDA 70
Query: 44 -NTRKPLGRILLKGDNITLM 62
R+ +G+ILLKGDNI+L+
Sbjct: 71 PEERRKVGQILLKGDNISLI 90
>gi|169620926|ref|XP_001803874.1| hypothetical protein SNOG_13667 [Phaeosphaeria nodorum SN15]
gi|111057994|gb|EAT79114.1| hypothetical protein SNOG_13667 [Phaeosphaeria nodorum SN15]
Length = 97
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 27/82 (32%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI---KK 43
+++ PIN IF+ LQS GFDE+MNLV+DDA EV + KK
Sbjct: 12 KVLLPPINFIFKLLQSRATISVWLYENLGMRIEGKLRGFDEFMNLVIDDAVEVTLANAKK 71
Query: 44 NT---RKPLGRILLKGDNITLM 62
T R+ +G+ILLKGDNI+L+
Sbjct: 72 ETPEERRSIGQILLKGDNISLI 93
>gi|398365473|ref|NP_014802.3| Sme1p [Saccharomyces cerevisiae S288c]
gi|2500647|sp|Q12330.1|RUXE_YEAST RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|1293719|gb|AAC49645.1| similar to the mammalian snRNP-E involved in splicing, CAI: 0.12;
snRNPE homolog [Saccharomyces cerevisiae]
gi|1420395|emb|CAA99365.1| SME1 [Saccharomyces cerevisiae]
gi|1694906|emb|CAA63198.1| core snRNP protein E [Saccharomyces cerevisiae]
gi|45269948|gb|AAS56355.1| YOR159C [Saccharomyces cerevisiae]
gi|151945777|gb|EDN64018.1| Sm E [Saccharomyces cerevisiae YJM789]
gi|190407477|gb|EDV10744.1| small nuclear ribonucleoprotein E [Saccharomyces cerevisiae
RM11-1a]
gi|256272778|gb|EEU07749.1| Sme1p [Saccharomyces cerevisiae JAY291]
gi|259149642|emb|CAY86446.1| Sme1p [Saccharomyces cerevisiae EC1118]
gi|285815039|tpg|DAA10932.1| TPA: Sme1p [Saccharomyces cerevisiae S288c]
gi|349581316|dbj|GAA26474.1| K7_Sme1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296487|gb|EIW07589.1| Sme1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 94
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 29/92 (31%)
Query: 3 STKVQ-RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
S KV+ + M PIN IF FLQ GFDE+MN+V+D+A E+
Sbjct: 2 SNKVKTKAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIP 61
Query: 41 I-----KKNTRK--PLGRILLKGDNITLMMNT 65
+ K++ K PLG+ILLKGDNITL+ +
Sbjct: 62 VNSADGKEDVEKGTPLGKILLKGDNITLITSA 93
>gi|45184940|ref|NP_982658.1| AAR116Wp [Ashbya gossypii ATCC 10895]
gi|44980549|gb|AAS50482.1| AAR116Wp [Ashbya gossypii ATCC 10895]
gi|374105858|gb|AEY94769.1| FAAR116Wp [Ashbya gossypii FDAG1]
Length = 97
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 32/90 (35%)
Query: 3 STKVQRIMTQPINLIFRFLQ---------------------SGFDEYMNLVLDDAEEV-- 39
S K Q+ M PIN I+ +LQ SGFDE+MN+V+D+A EV
Sbjct: 2 SGKQQKPMMPPINCIYNYLQQQTTVTFWLFQQTQMRIKGRISGFDEFMNVVVDEAVEVPV 61
Query: 40 -------HIKKNTRKPLGRILLKGDNITLM 62
+ ++TR LGRILLKGDNITL+
Sbjct: 62 DEKSGEEQVGRSTR--LGRILLKGDNITLI 89
>gi|345568747|gb|EGX51639.1| hypothetical protein AOL_s00054g38 [Arthrobotrys oligospora ATCC
24927]
Length = 98
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 25/79 (31%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI----KK 43
++ PIN IF+ LQ+ GFDE+MNLV+D+A E+ + +
Sbjct: 14 VLLPPINFIFKLLQTHATVQIWLYEQLQTRIEGKIRGFDEFMNLVIDEAVEIKLPSKTED 73
Query: 44 NTRKPLGRILLKGDNITLM 62
TR+ LGRILLKGDN+T +
Sbjct: 74 ETRRELGRILLKGDNVTCI 92
>gi|363753610|ref|XP_003647021.1| hypothetical protein Ecym_5455 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890657|gb|AET40204.1| hypothetical protein Ecym_5455 [Eremothecium cymbalariae
DBVPG#7215]
Length = 93
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 45/88 (51%), Gaps = 28/88 (31%)
Query: 3 STKVQRIMTQPINLIFRFLQ---------------------SGFDEYMNLVLDDAEEVHI 41
S K Q+ M PIN I+ LQ SGFDE+MN+V+DDA E+ I
Sbjct: 2 SGKQQKTMMPPINCIYSHLQQQSTVKFWLYQQSQMRIKGKISGFDEFMNVVIDDALELPI 61
Query: 42 KKNTRKP-------LGRILLKGDNITLM 62
+ T LGRILLKGDNITL+
Sbjct: 62 DEKTGAELPDKAVKLGRILLKGDNITLI 89
>gi|145237192|ref|XP_001391243.1| small nuclear ribonucleoprotein E [Aspergillus niger CBS 513.88]
gi|134075709|emb|CAK96601.1| unnamed protein product [Aspergillus niger]
gi|350635406|gb|EHA23767.1| hypothetical protein ASPNIDRAFT_40173 [Aspergillus niger ATCC
1015]
gi|358369432|dbj|GAA86046.1| small nuclear ribonucleoprotein SmE [Aspergillus kawachii IFO
4308]
Length = 95
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 25/75 (33%)
Query: 13 PINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI----KKNTRK 47
PI+ IF+ LQ GFDE+MNLV+DDA EV + ++ R+
Sbjct: 17 PIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRMATKSEEEKRR 76
Query: 48 PLGRILLKGDNITLM 62
PLG+ILLKGDN++L+
Sbjct: 77 PLGQILLKGDNVSLI 91
>gi|451995795|gb|EMD88263.1| hypothetical protein COCHEDRAFT_15041 [Cochliobolus
heterostrophus C5]
Length = 92
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 25/80 (31%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK--- 43
+++ PIN IF+ LQS GFDE+MNLV+DDA EV + K
Sbjct: 9 KVLLPPINFIFKLLQSRATISVWLYENLGMRIEGKLRGFDEFMNLVIDDAIEVTLAKKDA 68
Query: 44 -NTRKPLGRILLKGDNITLM 62
R+ +G+ILLKGDNI+L+
Sbjct: 69 PEERRKVGQILLKGDNISLI 88
>gi|365984381|ref|XP_003669023.1| hypothetical protein NDAI_0C01190 [Naumovozyma dairenensis CBS
421]
gi|343767791|emb|CCD23780.1| hypothetical protein NDAI_0C01190 [Naumovozyma dairenensis CBS
421]
Length = 94
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 28/92 (30%)
Query: 1 MASTKVQRIMTQPINLIFRFLQ---------------------SGFDEYMNLVLDDAEEV 39
M+S + M PIN IF +LQ SGFDE+MN+V+DDA E+
Sbjct: 1 MSSRTKSKAMVPPINCIFGYLQQQTPVTFWLYEQVGIRITGKISGFDEFMNVVIDDAIEI 60
Query: 40 HIKKNT-------RKPLGRILLKGDNITLMMN 64
+ T LGRI+LKGDNITL+ +
Sbjct: 61 PVDPKTGVENKAKGTQLGRIMLKGDNITLITS 92
>gi|432108661|gb|ELK33362.1| Small nuclear ribonucleoprotein E [Myotis davidii]
Length = 80
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 21/59 (35%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIK 42
KVQ++M QPINLIFR+LQ+ GFDE+MNLVLDDA E+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEFMNLVLDDAGEIHSK 67
>gi|297295616|ref|XP_002804656.1| PREDICTED: small nuclear ribonucleoprotein E-like [Macaca mulatta]
Length = 105
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 21/72 (29%)
Query: 14 INLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKPLGRI 52
+NLIFR+LQ+ FDEY+ LVLD+AEE++ K +R +GRI
Sbjct: 31 VNLIFRYLQNRSRIQVWLYEQVNTRIEGCIISFDEYVKLVLDNAEEIYSKTKSRMQVGRI 90
Query: 53 LLKGDNITLMMN 64
+LKG NITL+ +
Sbjct: 91 MLKGHNITLLQS 102
>gi|303310042|ref|XP_003065034.1| Small nuclear ribonucleoprotein E , putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240104693|gb|EER22889.1| Small nuclear ribonucleoprotein E , putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320033257|gb|EFW15206.1| hypothetical protein CPSG_08394 [Coccidioides posadasii str.
Silveira]
gi|392867032|gb|EAS29780.2| LSM domain-containing protein [Coccidioides immitis RS]
Length = 94
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 25/80 (31%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI----K 42
+ + QPI+ IF+ LQ GFDE+MNLV+DDA EV + +
Sbjct: 11 KTLLQPIHFIFKLLQQRSTVSIWLYEQLAVRIEGKIRGFDEFMNLVIDDAVEVRVPTKDQ 70
Query: 43 KNTRKPLGRILLKGDNITLM 62
+ R+ LG+ILLKGDN++L+
Sbjct: 71 EEQRRQLGQILLKGDNVSLI 90
>gi|403214323|emb|CCK68824.1| hypothetical protein KNAG_0B03830 [Kazachstania naganishii CBS
8797]
Length = 90
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 28/78 (35%)
Query: 13 PINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKP--- 48
PIN IF +LQ+ GFDE+MN+V+D+AEEV + K T +
Sbjct: 7 PINCIFNYLQNETSVTIWLFEQVSYRIRGKIRGFDEFMNVVVDEAEEVPLDKATGREIGE 66
Query: 49 ----LGRILLKGDNITLM 62
LGRILLKGDNITL+
Sbjct: 67 KSVTLGRILLKGDNITLI 84
>gi|50549605|ref|XP_502273.1| YALI0D01155p [Yarrowia lipolytica]
gi|49648141|emb|CAG80459.1| YALI0D01155p [Yarrowia lipolytica CLIB122]
Length = 85
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 23/79 (29%)
Query: 7 QRIMTQPINLIFRFLQ---------------------SGFDEYMNLVLDDAEEVHIKKNT 45
QR+M PI ++F+FLQ GFDE+MN+VL+DA + I +
Sbjct: 7 QRVMLVPIKVLFKFLQLHATVQVWLFEQSDTRIQGTLVGFDEFMNVVLEDA--IQICGDK 64
Query: 46 RKPLGRILLKGDNITLMMN 64
+ +G+I+LKGDNITL+ N
Sbjct: 65 ERKIGKIMLKGDNITLISN 83
>gi|407924103|gb|EKG17161.1| hypothetical protein MPH_05615 [Macrophomina phaseolina MS6]
Length = 95
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 25/83 (30%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI----K 42
+++ PIN IF+ LQ+ GFDE+MNLV+DDA EV +
Sbjct: 11 KVLLPPINFIFKLLQTRATVSIWLFEQVGLRIEGKIRGFDEFMNLVIDDAIEVKLATKDS 70
Query: 43 KNTRKPLGRILLKGDNITLMMNT 65
+ R+ LG+ILLKGDN++L+ +
Sbjct: 71 EEKRRALGQILLKGDNVSLIQSV 93
>gi|156836424|ref|XP_001642276.1| hypothetical protein Kpol_218p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156112763|gb|EDO14418.1| hypothetical protein Kpol_218p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 43/84 (51%), Gaps = 28/84 (33%)
Query: 7 QRIMTQPINLIFRFLQ---------------------SGFDEYMNLVLDDAEEVHIKKNT 45
+ M PIN IF +LQ +GFDE+MN+V+DDA EV + T
Sbjct: 5 SKAMMPPINCIFNYLQQQTLVTFWLYEQVGIRIRGKIAGFDEFMNVVIDDALEVPVDVKT 64
Query: 46 RKP-------LGRILLKGDNITLM 62
K LGRILLKGDNITL+
Sbjct: 65 GKEKLDEARKLGRILLKGDNITLL 88
>gi|380479557|emb|CCF42948.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 96
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 26/82 (31%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV-HIKKNT- 45
++ PIN IF+ LQ GFDE+MNLV+DDA EV I K
Sbjct: 12 VLLPPINFIFKLLQQHTTVQIWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTNL 71
Query: 46 ---RKPLGRILLKGDNITLMMN 64
R PLG+ILLKGDN++L+ +
Sbjct: 72 EEKRTPLGQILLKGDNVSLIQS 93
>gi|302422556|ref|XP_003009108.1| small nuclear ribonucleoprotein E [Verticillium albo-atrum
VaMs.102]
gi|261352254|gb|EEY14682.1| small nuclear ribonucleoprotein E [Verticillium albo-atrum
VaMs.102]
gi|346970265|gb|EGY13717.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 94
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 26/82 (31%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI-----K 42
++ PIN IF+ LQ GFDE+MNLV+D+A EV K
Sbjct: 12 VLLPPINFIFKLLQQQATVQVWLYEQLSIRIEGKIRGFDEFMNLVIDNAVEVKQITKTNK 71
Query: 43 KNTRKPLGRILLKGDNITLMMN 64
+ TR+ LG+ILLKGDN++L+ +
Sbjct: 72 EETRRSLGQILLKGDNVSLIQS 93
>gi|50302335|ref|XP_451102.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640233|emb|CAH02690.1| KLLA0A02299p [Kluyveromyces lactis]
Length = 93
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 28/91 (30%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+ +KV M PIN I+ +L GFDE+MN+V+DDA E+
Sbjct: 1 MSGSKVGAPMVPPINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEI 60
Query: 40 HIKKNTRKP-------LGRILLKGDNITLMM 63
+ + K LGRI+LKGDNITL++
Sbjct: 61 AVDPKSGKESDDKAVFLGRIMLKGDNITLVV 91
>gi|406866709|gb|EKD19748.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 95
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 25/83 (30%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV----HI 41
++++ PIN IF+ LQ GFDE+MNLV+DDA EV
Sbjct: 10 RKVLLPPINFIFKLLQQRSTVQIWLYEQLAIRIEGKIRGFDEFMNLVIDDAVEVKQATKT 69
Query: 42 KKNTRKPLGRILLKGDNITLMMN 64
+R+ LG+ILLKGDN++L+ +
Sbjct: 70 SAESRRDLGQILLKGDNVSLIQS 92
>gi|425766459|gb|EKV05069.1| Small nuclear ribonucleoprotein SmE, putative [Penicillium
digitatum PHI26]
gi|425781600|gb|EKV19555.1| Small nuclear ribonucleoprotein SmE, putative [Penicillium
digitatum Pd1]
Length = 87
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 25/81 (30%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT 45
++ + PI+ IF FLQ GFDE+MNLV+++A EV + T
Sbjct: 4 RKTLLAPIHCIFGFLQKRIPVSVWLYEQLAFRIEGTIRGFDEFMNLVIENAVEVRLATKT 63
Query: 46 ----RKPLGRILLKGDNITLM 62
R+PLG+ILLKGDN++L+
Sbjct: 64 EEEKRRPLGQILLKGDNVSLI 84
>gi|367008820|ref|XP_003678911.1| hypothetical protein TDEL_0A03680 [Torulaspora delbrueckii]
gi|359746568|emb|CCE89700.1| hypothetical protein TDEL_0A03680 [Torulaspora delbrueckii]
Length = 93
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 28/87 (32%)
Query: 7 QRIMTQPINLIFRFLQ---------------------SGFDEYMNLVLDDAEEVHIKKNT 45
+ M PIN IF +LQ SGFDE+MN+V+DDA E+ + T
Sbjct: 5 SKAMVPPINCIFDYLQQQTLVTFWLFEQVGIRIRGKISGFDEFMNVVIDDALEIPVDPKT 64
Query: 46 -------RKPLGRILLKGDNITLMMNT 65
+ LG+ILLKGDNITL+ +
Sbjct: 65 GVEDIEKGRKLGKILLKGDNITLITSV 91
>gi|315041917|ref|XP_003170335.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|311345369|gb|EFR04572.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
Length = 95
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 25/75 (33%)
Query: 13 PINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT----RK 47
PI+ IF+ LQ GFDE+MNLV+DDA EV + T R+
Sbjct: 16 PIHFIFKLLQQRTTVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDAVEVKLATKTEAESRR 75
Query: 48 PLGRILLKGDNITLM 62
LG+ILLKGDN++L+
Sbjct: 76 QLGQILLKGDNVSLI 90
>gi|327298737|ref|XP_003234062.1| small nuclear ribonucleoprotein E [Trichophyton rubrum CBS
118892]
gi|326464240|gb|EGD89693.1| small nuclear ribonucleoprotein E [Trichophyton rubrum CBS
118892]
gi|326472547|gb|EGD96556.1| small nuclear ribonucleoprotein SmE [Trichophyton tonsurans CBS
112818]
gi|326484188|gb|EGE08198.1| small nuclear ribonucleoprotein SmE [Trichophyton equinum CBS
127.97]
Length = 95
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 25/75 (33%)
Query: 13 PINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI----KKNTRK 47
PI+ IF+ LQ GFDE+MNLV+DDA EV + ++ +R+
Sbjct: 16 PIHFIFKLLQQRTTVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDAVEVKLATKTEEESRR 75
Query: 48 PLGRILLKGDNITLM 62
LG+ILLKGDN++L+
Sbjct: 76 QLGQILLKGDNVSLI 90
>gi|254581938|ref|XP_002496954.1| ZYRO0D11968p [Zygosaccharomyces rouxii]
gi|238939846|emb|CAR28021.1| ZYRO0D11968p [Zygosaccharomyces rouxii]
Length = 93
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 28/80 (35%)
Query: 13 PINLIFRFLQ---------------------SGFDEYMNLVLDDAEEVHIKKNTRKP--- 48
PIN IF FLQ SGFDE+MN+V++DA E+ + T K
Sbjct: 11 PINCIFGFLQQQTVVTFWLFEQLGTRIRGKISGFDEFMNVVIEDATEIPVDPQTGKEHLD 70
Query: 49 ----LGRILLKGDNITLMMN 64
LG+ILLKGDNITL+ +
Sbjct: 71 RGKKLGKILLKGDNITLITS 90
>gi|296817973|ref|XP_002849323.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
gi|238839776|gb|EEQ29438.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
Length = 95
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 25/75 (33%)
Query: 13 PINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT----RK 47
PI+ IF+ LQ GFDE+MNLV+DDA EV + T R+
Sbjct: 16 PIHFIFKLLQQRATVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDAVEVTLATKTEAESRR 75
Query: 48 PLGRILLKGDNITLM 62
LG+ILLKGDN++L+
Sbjct: 76 QLGQILLKGDNVSLI 90
>gi|261204379|ref|XP_002629403.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis
SLH14081]
gi|239587188|gb|EEQ69831.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis
SLH14081]
gi|239614272|gb|EEQ91259.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis ER-3]
gi|327356357|gb|EGE85214.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis ATCC
18188]
Length = 94
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 25/81 (30%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT 45
++ + PI+ IF+ LQ GFDE+MNLV+DDA EV + T
Sbjct: 10 RKTLLAPIHFIFKLLQQRSTVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKT 69
Query: 46 ----RKPLGRILLKGDNITLM 62
R+ LG+ILLKGDN++L+
Sbjct: 70 EEEKRRQLGQILLKGDNVSLI 90
>gi|336270688|ref|XP_003350103.1| hypothetical protein SMAC_00994 [Sordaria macrospora k-hell]
gi|380095497|emb|CCC06970.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 96
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 26/80 (32%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI-----K 42
++ PIN +FR LQ GFDE+MNLV+D+A EV + +
Sbjct: 12 VLLPPINFLFRLLQQHSTVQIWLYEQLHIRIIGTIRGFDEFMNLVIDNAIEVKLVSKTNE 71
Query: 43 KNTRKPLGRILLKGDNITLM 62
K R+ LG+ILLKGDN++L+
Sbjct: 72 KEERRELGQILLKGDNVSLI 91
>gi|410078143|ref|XP_003956653.1| hypothetical protein KAFR_0C05270 [Kazachstania africana CBS
2517]
gi|372463237|emb|CCF57518.1| hypothetical protein KAFR_0C05270 [Kazachstania africana CBS
2517]
Length = 94
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 43/90 (47%), Gaps = 28/90 (31%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
ST + PIN IF +LQ GFDE+MN+V+DDA E+ +
Sbjct: 2 STSKPKAHVPPINCIFNYLQQQVPVTFWLYEQVGIRIRGKIRGFDEFMNIVIDDAVEIPV 61
Query: 42 KKNTRKP-------LGRILLKGDNITLMMN 64
T LGRILLKGDNITL+ +
Sbjct: 62 DSTTGTEQVDKGIKLGRILLKGDNITLITS 91
>gi|367053583|ref|XP_003657170.1| hypothetical protein THITE_2122649 [Thielavia terrestris NRRL
8126]
gi|347004435|gb|AEO70834.1| hypothetical protein THITE_2122649 [Thielavia terrestris NRRL
8126]
Length = 90
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 22/84 (26%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
A+ +R++ PIN +FR LQ GFDE+MNLV+ + +
Sbjct: 5 AAGGGRRVLLPPINFLFRLLQQRSTVQIWLYEQLSIRIVGTIRGFDEFMNLVVKQISKTN 64
Query: 41 IKKNTRKPLGRILLKGDNITLMMN 64
TR+PLG+ILLKGDN++L+ +
Sbjct: 65 -DTETRRPLGQILLKGDNVSLIQS 87
>gi|310798264|gb|EFQ33157.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 96
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 26/82 (31%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT-- 45
++ PIN IF+ LQ GFDE+MNLV+DDA EV T
Sbjct: 12 VLLPPINFIFKLLQQHSTVQIWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQVTKTNP 71
Query: 46 ---RKPLGRILLKGDNITLMMN 64
R+ LG+ILLKGDN++L+ +
Sbjct: 72 EEKRRALGQILLKGDNVSLIQS 93
>gi|385302463|gb|EIF46594.1| small nuclear ribonucleoprotein e [Dekkera bruxellensis AWRI1499]
Length = 79
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 22/75 (29%)
Query: 10 MTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTR-K 47
M PIN IF++LQ GFDE+MN+VLDDA E+ + + +
Sbjct: 1 MVPPINQIFKYLQQQSKVTIWLYEQVNVRLTGVLKGFDEFMNVVLDDAVEISQGXSAKQR 60
Query: 48 PLGRILLKGDNITLM 62
LG +LLKGDNITL+
Sbjct: 61 KLGTVLLKGDNITLI 75
>gi|453085619|gb|EMF13662.1| LSM-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 99
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 30/88 (34%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI---- 41
++++ PIN IF+ LQ GFDE+MNLV+DDA EV
Sbjct: 10 RKVLLPPINFIFKLLQQHSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVEVQQSAKG 69
Query: 42 -----KKNTRKPLGRILLKGDNITLMMN 64
K R+ LG+ILLKGDN+ L+ +
Sbjct: 70 ETNEDSKEGRRELGQILLKGDNVCLIQS 97
>gi|85107508|ref|XP_962388.1| hypothetical protein NCU06354 [Neurospora crassa OR74A]
gi|28923993|gb|EAA33152.1| predicted protein [Neurospora crassa OR74A]
Length = 96
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 26/80 (32%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT-- 45
++ PIN +FR LQ GFDE+MNLV+D+A EV + T
Sbjct: 12 VLLPPINFLFRLLQQHSTVQIWLYEQLHIRIIGTIRGFDEFMNLVIDNAIEVKLVSKTNE 71
Query: 46 ---RKPLGRILLKGDNITLM 62
R+ LG+ILLKGDN++L+
Sbjct: 72 TEERRELGQILLKGDNVSLI 91
>gi|432090682|gb|ELK24023.1| Small nuclear ribonucleoprotein E [Myotis davidii]
Length = 128
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRI 52
A +++Q + + +N+ GFDEYMNLVLDDAEE+H K +RK L R+
Sbjct: 45 ARSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLERV 95
>gi|225679918|gb|EEH18202.1| hypothetical protein PABG_00765 [Paracoccidioides brasiliensis
Pb03]
gi|226291688|gb|EEH47116.1| hypothetical protein PADG_03214 [Paracoccidioides brasiliensis
Pb18]
Length = 94
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 25/75 (33%)
Query: 13 PINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT----RK 47
PI+ IF+ LQ GFDE+MNLV+DDA EV + T ++
Sbjct: 16 PIHFIFKLLQQRSVVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKTEEERKR 75
Query: 48 PLGRILLKGDNITLM 62
LG+ILLKGDN++L+
Sbjct: 76 QLGQILLKGDNVSLI 90
>gi|452842154|gb|EME44090.1| hypothetical protein DOTSEDRAFT_130967 [Dothistroma septosporum
NZE10]
Length = 99
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 30/88 (34%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIK--- 42
++++ PIN IF+ LQ GFDE+MNLV+DDA EV
Sbjct: 10 RKVLLPPINFIFKLLQQHNTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVEVKQPAKG 69
Query: 43 ------KNTRKPLGRILLKGDNITLMMN 64
K+ R+ LG+ILLKGDN+ L+ +
Sbjct: 70 QTEEDVKDQRRELGQILLKGDNVCLIQS 97
>gi|212543921|ref|XP_002152115.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
marneffei ATCC 18224]
gi|242787996|ref|XP_002481132.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
stipitatus ATCC 10500]
gi|210067022|gb|EEA21115.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
marneffei ATCC 18224]
gi|218721279|gb|EED20698.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
stipitatus ATCC 10500]
Length = 94
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 25/81 (30%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI---- 41
++ + PI+ IF+ LQ GFDE+MNLV+DDA EV +
Sbjct: 10 RKTLLAPIHFIFKLLQQRSTVSIWLYEQLSFRIEGKIRGFDEFMNLVVDDAVEVRLATKS 69
Query: 42 KKNTRKPLGRILLKGDNITLM 62
++ R+ LG+ILLKGDN++L+
Sbjct: 70 EEEKRRNLGQILLKGDNVSLI 90
>gi|302309857|ref|XP_002999588.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049185|emb|CAR58061.1| unnamed protein product [Candida glabrata]
Length = 94
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 28/90 (31%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+ + + PIN IF LQ GFDE+MN+V+DDA EV
Sbjct: 1 MSGKSKGKAIVPPINCIFNHLQQQTPVTFWLYEQVGIRIRGTIRGFDEFMNVVIDDAVEV 60
Query: 40 HIKKNTRKP-------LGRILLKGDNITLM 62
I+ + + LGRILLKGDNITL+
Sbjct: 61 PIEAKSGRELVDQGTKLGRILLKGDNITLI 90
>gi|449297252|gb|EMC93270.1| hypothetical protein BAUCODRAFT_76081 [Baudoinia compniacensis
UAMH 10762]
Length = 97
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 28/85 (32%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI----- 41
+++ PIN IF+ LQ GFDE+MNLV+D+A EV
Sbjct: 11 KVLLPPINFIFKLLQQRSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDEAVEVKQPTKAD 70
Query: 42 --KKNTRKPLGRILLKGDNITLMMN 64
+N R+ LG+ILLKGDN+ L+ +
Sbjct: 71 PEPENPRRELGQILLKGDNVCLIQS 95
>gi|393247818|gb|EJD55325.1| hypothetical protein AURDEDRAFT_50301, partial [Auricularia
delicata TFB-10046 SS5]
Length = 65
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKN-TRKPLGRILLKGDNITLM 62
GFDE+MN+V+DDA EV+ K R+ LGRILLKGD ITL+
Sbjct: 22 GFDEFMNVVIDDATEVYTDKTKERRLLGRILLKGDAITLI 61
>gi|401840391|gb|EJT43229.1| SME1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 85
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 28/81 (34%)
Query: 10 MTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKP 48
M PIN IF +LQ GFDE+MN+V+D+A EV + K
Sbjct: 1 MVPPINCIFNYLQQQTPVTIWLFEQVGIRIRGKIVGFDEFMNVVIDEAVEVPVNSTDGKE 60
Query: 49 -------LGRILLKGDNITLM 62
LGR+LLKGDNITL+
Sbjct: 61 DVEKGTTLGRVLLKGDNITLI 81
>gi|444314665|ref|XP_004177990.1| hypothetical protein TBLA_0A06790 [Tetrapisispora blattae CBS
6284]
gi|387511029|emb|CCH58471.1| hypothetical protein TBLA_0A06790 [Tetrapisispora blattae CBS
6284]
Length = 91
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 42/78 (53%), Gaps = 28/78 (35%)
Query: 13 PINLIFRFLQ---------------------SGFDEYMNLVLDDAEEVHIKKNT------ 45
PINLIF +L+ SGFDE+MNLV+D+A E+ I T
Sbjct: 10 PINLIFNYLEKQSTIKVWLYENTHSRIQGKISGFDEFMNLVIDNAIEIPIDNVTGVEQIE 69
Query: 46 -RKPLGRILLKGDNITLM 62
K LG+ILLKGDNITL+
Sbjct: 70 NGKKLGQILLKGDNITLI 87
>gi|440297058|gb|ELP89788.1| hypothetical protein EIN_425100 [Entamoeba invadens IP1]
Length = 85
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 23 SGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+ FD YMN+ L+ AEEV++K + R+ +G I+LKGDNI ++
Sbjct: 43 TAFDTYMNITLEQAEEVYVKTSNRRSIGNIMLKGDNIAVV 82
>gi|367001997|ref|XP_003685733.1| hypothetical protein TPHA_0E02070 [Tetrapisispora phaffii CBS
4417]
gi|357524032|emb|CCE63299.1| hypothetical protein TPHA_0E02070 [Tetrapisispora phaffii CBS
4417]
Length = 94
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 28/78 (35%)
Query: 13 PINLIFRFLQ---------------------SGFDEYMNLVLDDAEEVHIKKNTR----- 46
PIN +F FLQ +GFDE+MN+V+D+A E+ + T
Sbjct: 11 PINSVFNFLQQQTLVSFWLYEQVGFRIRGKVAGFDEFMNVVIDNAIEIPVDAETGIERVT 70
Query: 47 --KPLGRILLKGDNITLM 62
K LGRILLKGDNITL+
Sbjct: 71 DGKKLGRILLKGDNITLI 88
>gi|295667135|ref|XP_002794117.1| hypothetical protein PAAG_03710 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226286223|gb|EEH41789.1| hypothetical protein PAAG_03710 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 155
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 25/80 (31%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT- 45
+ + PI+ IF+ LQ GFDE+MNLV+DDA EV + T
Sbjct: 72 KTLLAPIHFIFKLLQQRSVVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKTE 131
Query: 46 ---RKPLGRILLKGDNITLM 62
++ LG+ILLKGDN++L+
Sbjct: 132 EEKKRQLGQILLKGDNVSLI 151
>gi|328859947|gb|EGG09054.1| hypothetical protein MELLADRAFT_96304 [Melampsora larici-populina
98AG31]
Length = 96
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 21/80 (26%)
Query: 3 STKVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEVHI 41
S + QR+M QPIN+IF+ LQ+G FDE+MN+VLD+A EV +
Sbjct: 2 SGRQQRVMVQPINVIFKHLQAGQLVHIWLYDNTEFRLEGKIIGFDEFMNVVLDNASEVWV 61
Query: 42 KKNTRKPLGRILLKGDNITL 61
K P + KG + L
Sbjct: 62 KAKKGTPHREAVEKGTRVPL 81
>gi|452980005|gb|EME79767.1| hypothetical protein MYCFIDRAFT_81234 [Pseudocercospora fijiensis
CIRAD86]
Length = 100
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 30/88 (34%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIK--- 42
++++ PIN IF+ LQ GFDE+MNLV+DDA EV
Sbjct: 11 RKVLLPPINFIFKLLQQHSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVEVKQPGKG 70
Query: 43 ------KNTRKPLGRILLKGDNITLMMN 64
K+ R+ +G+ILLKGDN+ L+ +
Sbjct: 71 ETEEDVKDQRREVGQILLKGDNVCLIQS 98
>gi|378727606|gb|EHY54065.1| small nuclear ribonucleoprotein E [Exophiala dermatitidis
NIH/UT8656]
Length = 94
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 25/83 (30%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI---- 41
++ + PI+ IF LQ GFDE+MNLV+DDA EV +
Sbjct: 10 RKTLLAPIHFIFSLLQKRSTVSIWLYENLRTRIEGKIRGFDEFMNLVIDDAVEVQLATRD 69
Query: 42 KKNTRKPLGRILLKGDNITLMMN 64
R+ LG+ILLKGDN++L+ +
Sbjct: 70 SPEKRRQLGQILLKGDNVSLIQS 92
>gi|123468440|ref|XP_001317438.1| Sm protein [Trichomonas vaginalis G3]
gi|121900172|gb|EAY05215.1| Sm protein [Trichomonas vaginalis G3]
Length = 93
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFDEYMNLVL D+ EV+ K+NTR PLG LL+G+ + ++
Sbjct: 47 GFDEYMNLVLGDSYEVYPKENTRVPLGTSLLRGECVGMV 85
>gi|398397489|ref|XP_003852202.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
gi|339472083|gb|EGP87178.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
Length = 99
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 30/88 (34%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIK--- 42
++++ PIN IF+ LQ GFDE+MNLV+D+A EV
Sbjct: 10 RKVLLPPINFIFKLLQQHSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDEAVEVKQPGKG 69
Query: 43 ------KNTRKPLGRILLKGDNITLMMN 64
K+ R+ LG+ILLKGDN+ L+ +
Sbjct: 70 QTEADVKDQRRELGQILLKGDNVCLIQS 97
>gi|171683351|ref|XP_001906618.1| hypothetical protein [Podospora anserina S mat+]
gi|170941635|emb|CAP67289.1| unnamed protein product [Podospora anserina S mat+]
Length = 96
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 26/80 (32%)
Query: 9 IMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV-HIKKN-- 44
++ PIN +F+ LQ GFDE+MNLV+DDA EV I K
Sbjct: 12 VLLPPINFLFKLLQQRTPVQIWLYEQLSIRIIGIIRGFDEFMNLVIDDAVEVKQISKTND 71
Query: 45 --TRKPLGRILLKGDNITLM 62
TR+ LG+ILLKGDN++L+
Sbjct: 72 TETRRNLGQILLKGDNVSLI 91
>gi|293334659|ref|NP_001170587.1| uncharacterized protein LOC100384620 [Zea mays]
gi|238006188|gb|ACR34129.1| unknown [Zea mays]
Length = 143
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/23 (100%), Positives = 23/23 (100%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS 23
MASTKVQRIMTQPINLIFRFLQS
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQS 23
>gi|431892912|gb|ELK03340.1| AP-1 complex subunit mu-2 [Pteropus alecto]
Length = 181
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 4 TKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLG 50
+++Q + + +N+ GFDEYMNLVLDDAEE+H K +RK L
Sbjct: 19 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLA 65
>gi|281341468|gb|EFB17052.1| hypothetical protein PANDA_006654 [Ailuropoda melanoleuca]
Length = 30
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGR 51
GFDEYMNLVLDDAEE+H K +RK LG+
Sbjct: 1 GFDEYMNLVLDDAEEIHSKTKSRKQLGK 28
>gi|417407598|gb|JAA50403.1| Putative small nuclear ribonucleoprotein e, partial [Desmodus
rotundus]
Length = 91
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 22/79 (27%)
Query: 5 KVQRIMTQPINLIFRFLQ---------------------SGFDEYMNLVLDDAEEVHIKK 43
KVQ+ M QP NL+ R LQ +GF E ++LVLD+AEE+
Sbjct: 9 KVQKEMVQPTNLVLRSLQNRSRIQAWLSEQVNRRLEGCVTGFGECVSLVLDEAEEIQSXX 68
Query: 44 NTRKPLGRILLKGDNITLM 62
T++P G+ +LK DN L+
Sbjct: 69 XTKQP-GQNVLKADNSALL 86
>gi|145492122|ref|XP_001432059.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145499004|ref|XP_001435488.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399168|emb|CAK64662.1| unnamed protein product [Paramecium tetraurelia]
gi|124402621|emb|CAK68091.1| unnamed protein product [Paramecium tetraurelia]
Length = 95
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 23 SGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+GFDEY+NLVLD A E K K LG+ILLKG+NI L+
Sbjct: 48 AGFDEYLNLVLDRAVEYDRKTKATKELGKILLKGENIVLV 87
>gi|51847692|gb|AAU10483.1| small nuclear ribonucleoprotein polypepide-E [Felis catus]
Length = 32
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLG 50
GFDEYMNLVLDDAEE+H K +RK LG
Sbjct: 6 GFDEYMNLVLDDAEEIHSKTKSRKQLG 32
>gi|72390193|ref|XP_845391.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma brucei TREU927]
gi|9837178|gb|AAG00463.1|AF280395_1 Sm-E [Trypanosoma brucei]
gi|62360561|gb|AAX80973.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma brucei]
gi|70801926|gb|AAZ11832.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261328791|emb|CBH11769.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma brucei
gambiense DAL972]
Length = 86
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 66
G+DE+MN+VL DA EVH+K LG+ILL+ DN+ ++ G
Sbjct: 43 GYDEFMNVVLGDATEVHLKTGEVVQLGKILLRSDNVGVIHPIG 85
>gi|401885285|gb|EJT49407.1| small nuclear ribonucleoprotein E [Trichosporon asahii var. asahii
CBS 2479]
gi|406694808|gb|EKC98129.1| small nuclear ribonucleoprotein E [Trichosporon asahii var. asahii
CBS 8904]
Length = 118
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 47/116 (40%), Gaps = 58/116 (50%)
Query: 7 QRIMTQPINLIFRFLQ----------------------------------SGFDEYMNLV 32
+++M QPIN++F FLQ GFDE+MN+V
Sbjct: 4 RKVMVQPINILFSFLQKHQRVQIWLYDNNEFRLEAFIIVGLTLRGQRADGQGFDEFMNVV 63
Query: 33 LDDAEEVHIKKNTRKP----------------------LGRILLKGDNITLMMNTG 66
LD+ EEV+ + KP GRILLKGDNITL+ G
Sbjct: 64 LDETEEVY--DCSAKPGKEVKPRRSLGELRQYGNALTLAGRILLKGDNITLVQPVG 117
>gi|389602182|ref|XP_001566763.2| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505349|emb|CAM40282.2| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 86
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 21/84 (25%)
Query: 4 TKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIK 42
+ + R M P ++ RF+QS G+DE+MN+VL D E +++
Sbjct: 2 SSLTRQMENPTGVVHRFMQSHQRVCVWLVHDSHTRLEGNLLGYDEFMNVVLGDTTETNLR 61
Query: 43 KNTRKPLGRILLKGDNITLMMNTG 66
+ R LG+ILL+ DN+ ++ G
Sbjct: 62 NDKRYNLGKILLRSDNVGVIHPIG 85
>gi|399949646|gb|AFP65304.1| small nuclear ribonucleoprotein E [Chroomonas mesostigmatica
CCMP1168]
Length = 82
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 22/79 (27%)
Query: 10 MTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTRKP 48
++QPINL+FRF Q+ GFDE+MN+VL++A E++
Sbjct: 2 ISQPINLLFRFFQNRNLISITLQNAKLNTIIGIILGFDEFMNIVLENAFEIN-SSGKNIF 60
Query: 49 LGRILLKGDNITLMMNTGK 67
LG I++KGD I ++ + K
Sbjct: 61 LGHIMIKGDCIAIISDLSK 79
>gi|71412367|ref|XP_808372.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma cruzi strain CL
Brener]
gi|70872563|gb|EAN86521.1| small nuclear ribonucleoprotein Sm-E, putative [Trypanosoma cruzi]
Length = 115
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 66
G+DE+MN+VL DA EVH K +G+ILL+ DNI ++ G
Sbjct: 72 GYDEFMNVVLGDASEVHHKTKEVVHVGKILLRSDNIGVIHPIG 114
>gi|71666529|ref|XP_820222.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma cruzi strain CL
Brener]
gi|70885559|gb|EAN98371.1| small nuclear ribonucleoprotein Sm-E, putative [Trypanosoma
cruzi]
Length = 86
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 66
G+DE+MN+VL DA EVH K +G+ILL+ DNI ++ G
Sbjct: 43 GYDEFMNVVLGDASEVHHKTKEVVHVGKILLRSDNIGVIHPIG 85
>gi|350854337|emb|CCD58316.1| unnamed protein product [Schistosoma mansoni]
Length = 53
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRIL 53
GFDEYMNLVL DA E H+K +KPLG +
Sbjct: 17 GFDEYMNLVLADACERHMKSGAKKPLGETI 46
>gi|401425575|ref|XP_003877272.1| small nuclear ribonucleoprotein polypeptide e,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493517|emb|CBZ28805.1| small nuclear ribonucleoprotein polypeptide e,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 86
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 21/80 (26%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTR 46
R M P ++ RF+Q G+DE+MN+VL D E +++ N
Sbjct: 6 RQMENPTGVVHRFMQDHQRVCVWLVHDPQLRLEGNLLGYDEFMNVVLGDTTETNLRNNKS 65
Query: 47 KPLGRILLKGDNITLMMNTG 66
LG+ILL+ DN+ ++ G
Sbjct: 66 YRLGKILLRSDNVGVIYPVG 85
>gi|329765899|ref|ZP_08257464.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393795327|ref|ZP_10378691.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137605|gb|EGG41876.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 78
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 32/39 (82%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD++MNL+LD +EE+ ++ N+ K LG I+++GDN+ ++
Sbjct: 34 GFDQHMNLLLDSSEEIPVEGNS-KSLGTIVVRGDNVVMI 71
>gi|398019352|ref|XP_003862840.1| small nuclear ribonucleoprotein polypeptide e, putative
[Leishmania donovani]
gi|322501071|emb|CBZ36148.1| small nuclear ribonucleoprotein polypeptide e, putative
[Leishmania donovani]
Length = 86
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 21/80 (26%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTR 46
R M P ++ RF+Q G+DE+MN+VL D E +++ N
Sbjct: 6 RQMENPTGVVHRFMQDHQRVCVWLVHDPQMRLEGNLLGYDEFMNVVLGDTTETNLRNNKS 65
Query: 47 KPLGRILLKGDNITLMMNTG 66
LG+ILL+ DN+ ++ G
Sbjct: 66 YRLGKILLRSDNVGVIYPIG 85
>gi|312136602|ref|YP_004003939.1| small nuclear ribonucleoprotein, lsm family [Methanothermus
fervidus DSM 2088]
gi|311224321|gb|ADP77177.1| Small nuclear ribonucleoprotein, LSM family [Methanothermus
fervidus DSM 2088]
Length = 80
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR + FD +MNLVL+DAEE+ + TRK LG +L++GDNI
Sbjct: 35 FRGILKSFDLHMNLVLNDAEEIENGEVTRK-LGTVLIRGDNIV 76
>gi|146093720|ref|XP_001466971.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania infantum JPCM5]
gi|134071335|emb|CAM70021.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania infantum JPCM5]
Length = 86
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 21/80 (26%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTR 46
R M P ++ RF+Q G+DE+MN+VL D E +++ N
Sbjct: 6 RQMENPTGVVHRFMQDHQRVCVWLVHDPQMRLEGNLLGYDEFMNVVLGDTTETNLRNNKS 65
Query: 47 KPLGRILLKGDNITLMMNTG 66
LG+ILL+ DN+ ++ G
Sbjct: 66 YRLGKILLRSDNVGVIYPIG 85
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 17 IFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+ R L G+D++MN+VL+D +E+ I +NT+ LG I+++GD+I ++
Sbjct: 27 VLRGLLKGYDQHMNIVLEDTDEL-IDENTQNKLGTIVVRGDSIVMI 71
>gi|410720309|ref|ZP_11359665.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
gi|410601091|gb|EKQ55611.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
Length = 100
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR + FD +MNLVL+DAEE+ +++R+ LG +L++GDNI
Sbjct: 54 FRGVLESFDMHMNLVLNDAEELESGESSRR-LGVVLIRGDNIV 95
>gi|333986739|ref|YP_004519346.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
gi|333824883|gb|AEG17545.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
Length = 80
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR + + FD +MNLVL+DAEE+ +++R+ LG +L++GDNI
Sbjct: 34 FRGVLNSFDMHMNLVLNDAEELESGESSRR-LGVVLIRGDNIV 75
>gi|408381788|ref|ZP_11179336.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
gi|407815719|gb|EKF86289.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
Length = 80
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR + FD +MNLVL+DAEE+ +++R+ LG +L++GDNI
Sbjct: 34 FRGVLESFDMHMNLVLNDAEELESGESSRR-LGVVLIRGDNIV 75
>gi|6062981|gb|AAF03088.1|AF126283_1 SmE protein [Leptomonas collosoma]
Length = 94
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 21/80 (26%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTR 46
++M +P ++I +F+ + G+DE+MN+VL DA E + K
Sbjct: 14 KLMVKPSSVIHKFMTTQQRVCVWLVHDAHIKIEGNLLGYDEFMNVVLGDATETNSKTKES 73
Query: 47 KPLGRILLKGDNITLMMNTG 66
LG+ILL+ DN+ ++ G
Sbjct: 74 THLGKILLRSDNVGVVHAIG 93
>gi|340054134|emb|CCC48428.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma vivax Y486]
Length = 86
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 23/87 (26%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSG---------------------FDEYMNLVLDDAEEV 39
M++T Q M +P N++ R+++ G +DE+MN+VL DA EV
Sbjct: 1 MSTTTKQ--MIKPTNVVHRYMKEGQRVCVWLVHDTKMKIEGVLLGYDEFMNVVLGDAAEV 58
Query: 40 HIKKNTRKPLGRILLKGDNITLMMNTG 66
K +G+ILL+ DN+ L+ G
Sbjct: 59 IQKTGETVQVGKILLRSDNVGLIHPIG 85
>gi|392577759|gb|EIW70888.1| hypothetical protein TREMEDRAFT_29158 [Tremella mesenterica DSM
1558]
Length = 85
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 1 MAST-----KVQRIMTQPINLI------FRFLQSGFDEYMNLVLDDAEEVHIKKN--TRK 47
MAST V R + PI++I F GFD+Y+N+VL D +E +
Sbjct: 1 MASTILPLELVDRCIGSPIHVIMKNEREFTGTLMGFDDYVNMVLRDVKEYQVTPGGIIET 60
Query: 48 PLGRILLKGDNITLMMNTGK 67
PLG+ LL G+NI +++ G+
Sbjct: 61 PLGQTLLNGNNIVMLIPGGR 80
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 15 NLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
N+ R FD+++N+VLDDAEE+ +TRK LG I+++GD + L+ G+
Sbjct: 24 NIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRK-LGTIVIRGDTVVLISPLGE 75
>gi|340344088|ref|ZP_08667220.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519229|gb|EGP92952.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 78
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD++MNL+LD +EE+ + N+ K LG I+++GDN+ ++
Sbjct: 34 GFDQHMNLLLDSSEEIPTEGNS-KSLGTIVVRGDNVVMI 71
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 15 NLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 65
+++ R FD+++NLVL++AEE+ +TRK LG ++++GDN+ L+ T
Sbjct: 24 DIVVRGKLKSFDQHLNLVLEEAEEIKSDGSTRK-LGTLVIRGDNVVLISPT 73
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 15 NLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
N+ R FD+++N+VLDDAEE+ +TRK LG ++++GD + L+ G+
Sbjct: 24 NIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRK-LGTVVIRGDTVVLISPLGE 75
>gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786870|pdb|1I81|B Chain B, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786871|pdb|1I81|C Chain C, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786872|pdb|1I81|D Chain D, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786873|pdb|1I81|E Chain E, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786874|pdb|1I81|F Chain F, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786875|pdb|1I81|G Chain G, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|27573929|pdb|1MGQ|A Chain A, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573930|pdb|1MGQ|B Chain B, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573931|pdb|1MGQ|C Chain C, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573932|pdb|1MGQ|D Chain D, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573933|pdb|1MGQ|E Chain E, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573934|pdb|1MGQ|F Chain F, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573935|pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
Length = 83
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR + FD +MNLVL+DAEE+ + TR+ LG +L++GDNI +
Sbjct: 38 FRGVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYI 81
>gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726410|pdb|1LOJ|B Chain B, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726411|pdb|1LOJ|C Chain C, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726412|pdb|1LOJ|D Chain D, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726413|pdb|1LOJ|E Chain E, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726414|pdb|1LOJ|F Chain F, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726415|pdb|1LOJ|G Chain G, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726416|pdb|1LOJ|H Chain H, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726417|pdb|1LOJ|I Chain I, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726418|pdb|1LOJ|J Chain J, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726419|pdb|1LOJ|K Chain K, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726420|pdb|1LOJ|L Chain L, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726421|pdb|1LOJ|M Chain M, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726422|pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
Length = 87
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR + FD +MNLVL+DAEE+ + TR+ LG +L++GDNI
Sbjct: 36 FRGVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIV 77
>gi|288560538|ref|YP_003424024.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
gi|288543248|gb|ADC47132.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
Length = 77
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR + FD +MNLVLDDAEE+ K + LG +L++GDNI
Sbjct: 32 FRGILKSFDLHMNLVLDDAEELE-KGEVLRRLGTVLIRGDNIV 73
>gi|15678676|ref|NP_275791.1| small nuclear ribonucleoprotein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6094215|sp|O26745.1|RUXX_METTH RecName: Full=Putative snRNP Sm-like protein
gi|2621731|gb|AAB85154.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 81
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR + FD +MNLVL+DAEE+ + TR+ LG +L++GDNI +
Sbjct: 36 FRGVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYI 79
>gi|304314789|ref|YP_003849936.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
gi|302588248|gb|ADL58623.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
Length = 78
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR + FD +MNLVL+DAEE+ + TR+ LG +L++GDNI +
Sbjct: 33 FRGVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYI 76
>gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726340|pdb|1JBM|B Chain B, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726341|pdb|1JBM|C Chain C, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726342|pdb|1JBM|D Chain D, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726343|pdb|1JBM|E Chain E, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726344|pdb|1JBM|F Chain F, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726345|pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
Length = 86
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR + FD +MNLVL+DAEE+ + TR+ LG +L++GDNI
Sbjct: 36 FRGVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIV 77
>gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150504|pdb|1JRI|B Chain B, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150505|pdb|1JRI|C Chain C, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150506|pdb|1JRI|D Chain D, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150507|pdb|1JRI|E Chain E, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150508|pdb|1JRI|F Chain F, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150509|pdb|1JRI|G Chain G, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150510|pdb|1JRI|H Chain H, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150511|pdb|1JRI|I Chain I, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150512|pdb|1JRI|J Chain J, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150513|pdb|1JRI|K Chain K, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150514|pdb|1JRI|L Chain L, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150515|pdb|1JRI|M Chain M, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150516|pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit
Length = 85
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR + FD +MNLVL+DAEE+ + TR+ LG +L++GDNI
Sbjct: 36 FRGVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIV 77
>gi|148642242|ref|YP_001272755.1| small nuclear ribonucleoprotein [Methanobrevibacter smithii ATCC
35061]
gi|222444586|ref|ZP_03607101.1| hypothetical protein METSMIALI_00198 [Methanobrevibacter smithii
DSM 2375]
gi|261350875|ref|ZP_05976292.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
gi|148551259|gb|ABQ86387.1| snRNP Sm-like protein [Methanobrevibacter smithii ATCC 35061]
gi|222434151|gb|EEE41316.1| LSM domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860212|gb|EFC92510.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
Length = 76
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR + FD +MNLVL+DAEE+ + TR+ LG +L++GDNI
Sbjct: 31 FRGILKSFDLHMNLVLNDAEELQDGEVTRR-LGVVLIRGDNIV 72
>gi|118575248|ref|YP_874991.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118193769|gb|ABK76687.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 78
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD++MNL+L+ +EE+ ++ TR LG I+++GDN+ ++
Sbjct: 34 GFDQHMNLLLESSEEIPVEGETRT-LGTIVVRGDNVVII 71
>gi|157872335|ref|XP_001684716.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania major strain Friedlin]
gi|68127786|emb|CAJ06176.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania major strain Friedlin]
Length = 86
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 21/80 (26%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTR 46
R M P ++ RF+Q G+DE+MN+VL D E +++ +
Sbjct: 6 RQMENPTGVVHRFMQDHQRVCVWLVHDPQIRLEGNLLGYDEFMNVVLGDTTETNLRNSKS 65
Query: 47 KPLGRILLKGDNITLMMNTG 66
LG+ILL+ DN+ ++ G
Sbjct: 66 YRLGKILLRSDNVGVIYPIG 85
>gi|393794933|ref|ZP_10378297.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 76
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
FD +MNL LD+AE+ I N PLGRILL+GDNI
Sbjct: 34 FDIHMNLTLDNAED--ISDNKVVPLGRILLRGDNI 66
>gi|48477793|ref|YP_023499.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
gi|48430441|gb|AAT43306.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 71
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 15 NLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
N + +G+DEYMN+ LDDAEE T++ LG ++++G N+
Sbjct: 24 NRVLEGTLAGYDEYMNMTLDDAEE---SGETQRKLGTVVIRGSNV 65
>gi|410076164|ref|XP_003955664.1| hypothetical protein KAFR_0B02310 [Kazachstania africana CBS
2517]
gi|372462247|emb|CCF56529.1| hypothetical protein KAFR_0B02310 [Kazachstania africana CBS
2517]
Length = 87
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 6 VQRIMTQPINLI------FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPL-----GRILL 54
+ + + QP+ +I F GFD+++N+++DDA+E + N L GR+LL
Sbjct: 12 IDKTINQPVWIILQSNREFTGTLVGFDDFVNVIIDDAKEYIVNDNGENELVMEHHGRLLL 71
Query: 55 KGDNITLMMNTGK 67
G NI +++ GK
Sbjct: 72 SGGNINMLVPGGK 84
>gi|407464058|ref|YP_006774940.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047246|gb|AFS81998.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 78
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD++MNL+LD +EE+ + ++ K LG I+++GDN+ ++
Sbjct: 34 GFDQHMNLLLDSSEEIPAEGDS-KSLGSIVVRGDNVVMI 71
>gi|268323608|emb|CBH37196.1| putative snRNP Sm-like protein [uncultured archaeon]
Length = 102
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
FR G+D +MNLVL DAEE+ ++ +G IL++GDN+ + T K
Sbjct: 32 FRGTLEGYDLHMNLVLSDAEELDGDAIVKELMGEILVRGDNVVYISPTVK 81
>gi|16081975|ref|NP_394385.1| hypothetical protein Ta0927 [Thermoplasma acidophilum DSM 1728]
gi|10640204|emb|CAC12056.1| hypothetical protein [Thermoplasma acidophilum]
Length = 67
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 15 NLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
N + + +GFDEYMN+VLDD +E +N + LG ++++G N+
Sbjct: 19 NRVLEGVLTGFDEYMNMVLDDVDENS--ENVSRKLGTVVVRGSNVV 62
>gi|440468395|gb|ELQ37560.1| sm snRNP core protein Sme1 [Magnaporthe oryzae Y34]
gi|440482793|gb|ELQ63252.1| sm snRNP core protein Sme1 [Magnaporthe oryzae P131]
Length = 126
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 26/68 (38%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH--IKKN 44
+I+ PIN IF+ LQS GFDE+MNLV+DDA EV K N
Sbjct: 11 KILLPPINCIFKLLQSHATVSIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVEVKQITKDN 70
Query: 45 T---RKPL 49
T R+PL
Sbjct: 71 TEEKRRPL 78
>gi|386875009|ref|ZP_10117213.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807169|gb|EIJ66584.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 74
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD++MNL+LD +EE+ + ++ K LG I+++GDN+ ++
Sbjct: 30 GFDQHMNLLLDSSEEIPAEGDS-KSLGTIVVRGDNVVMI 67
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 6 VQRIMTQPI------NLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
+ R+++Q + NL R + FD +MN+VLD+AEE+ + LG ILL+G NI
Sbjct: 10 LNRVISQQVLIRLKNNLNIRGKVTSFDAHMNIVLDNAEELDANGELKAKLGTILLRGGNI 69
Query: 60 TLM 62
+
Sbjct: 70 IFV 72
>gi|124028416|ref|YP_001013736.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
gi|123979110|gb|ABM81391.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
Length = 77
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+D+++NLVL+DAEE++ TRK LG I+++GD + L+
Sbjct: 34 YDQHLNLVLEDAEEIYEDGRTRK-LGTIVIRGDTVLLI 70
>gi|297527485|ref|YP_003669509.1| hypothetical protein Shell_1522 [Staphylothermus hellenicus DSM
12710]
gi|297256401|gb|ADI32610.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 75
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+D+++N+VLDDAEE+ +TRK LG I+++GD + L+
Sbjct: 34 YDQHLNIVLDDAEEIRENGSTRK-LGTIVIRGDTVILI 70
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
R L +D++MNLVL D+EE+ + K +G I+++GDN+ L+
Sbjct: 27 VRGLLKSYDQHMNLVLSDSEEIQ-SDGSGKKIGTIVIRGDNVILI 70
>gi|298674160|ref|YP_003725910.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298287148|gb|ADI73114.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum
Z-7303]
Length = 72
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR G+D +MNLVLD+AEE++ + RK LG ++++GDN+
Sbjct: 27 FRGELQGYDVHMNLVLDNAEELNDGEIVRK-LGSVVIRGDNVV 68
>gi|402081161|gb|EJT76306.1| U6 snRNA-associated Sm-like protein LSm5 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 82
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
F L GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 29 FSGLLVGFDDYVNMVLEDVTEFDYSGNHTK-LSKILLNGNNICMLIPGGE 77
>gi|294495046|ref|YP_003541539.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666045|gb|ADE35894.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 72
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR G+D +MNLVLD+AEE+ + RK +G ++++GDN+ +
Sbjct: 27 FRGTLQGYDVHMNLVLDEAEEIKEGEIIRK-IGSVVVRGDNVVYV 70
>gi|407461730|ref|YP_006773047.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045352|gb|AFS80105.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 78
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD++MNL+LD +EE+ + ++ K LG I+++GDN+ ++
Sbjct: 34 GFDQHMNLLLDSSEEIPAEGDS-KGLGTIVVRGDNVVMI 71
>gi|452077675|gb|AGF93625.1| like-Sm ribonucleoprotein, eukaryotic and archaea-type, core
[uncultured organism]
Length = 73
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD++MNLVL+D EE K+++R+ +G I+L+G+N+ +
Sbjct: 34 GFDDHMNLVLEDTEEK--KEDSRRRIGTIILRGNNVVTL 70
>gi|336477290|ref|YP_004616431.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM
4017]
gi|335930671|gb|AEH61212.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 72
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR G+D +MNLVLD+AEE+ + RK LG ++++GDN+ +
Sbjct: 27 FRGELQGYDVHMNLVLDNAEELKDGEIVRK-LGSVVIRGDNVVYL 70
>gi|91774104|ref|YP_566796.1| small nuclear ribonucleoprotein [Methanococcoides burtonii DSM
6242]
gi|121684189|sp|Q12U30.1|RUXX_METBU RecName: Full=Putative snRNP Sm-like protein
gi|91713119|gb|ABE53046.1| Sm or Sm-like protein, RNA-binding [Methanococcoides burtonii DSM
6242]
Length = 72
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR + G+D +MNLVLD+AEE+ + RK +G ++++GDN+
Sbjct: 27 FRGVLQGYDVHMNLVLDEAEELKDGEIVRK-IGGVVIRGDNVV 68
>gi|126465841|ref|YP_001040950.1| LSM family small nuclear ribonucleoprotein [Staphylothermus
marinus F1]
gi|126014664|gb|ABN70042.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 75
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+D+++N+VLDDAEE+ +TRK LG I+++GD + L+
Sbjct: 34 YDQHLNIVLDDAEEIKEDGSTRK-LGTIVIRGDTVILI 70
>gi|327311719|ref|YP_004338616.1| small nuclear ribonucleoprotein [Thermoproteus uzoniensis 768-20]
gi|326948198|gb|AEA13304.1| small nuclear ribonucleoprotein [Thermoproteus uzoniensis 768-20]
Length = 86
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 15 NLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
+++ R + S +D MNLVLD+AEE+ T+ GRIL++G I
Sbjct: 32 DVVVRGILSIYDSCMNLVLDEAEELDKNGATKMKYGRILIRGSQI 76
>gi|254565605|ref|XP_002489913.1| hypothetical protein [Komagataella pastoris GS115]
gi|238029709|emb|CAY67632.1| hypothetical protein PAS_chr1-1_0487 [Komagataella pastoris GS115]
gi|328350324|emb|CCA36724.1| U6 snRNA-associated Sm-like protein LSm7 [Komagataella pastoris CBS
7435]
Length = 156
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 56
G+D+ MNLVLDDAEE+ +K ++ LGR++++G
Sbjct: 95 GYDQLMNLVLDDAEEI-LKSTEKRTLGRVIVRG 126
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 17 IFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
I R +D +MNLVL+++EEV +TRK +G I+++GDN+ L+
Sbjct: 30 IVRGTLKSYDMHMNLVLENSEEVMSDGSTRK-VGTIIIRGDNVILV 74
>gi|410671979|ref|YP_006924350.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
gi|409171107|gb|AFV24982.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
Length = 72
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR G+D +MNLVLD+AEE+ RK LG ++++GDNI
Sbjct: 27 FRGKLQGYDVHMNLVLDEAEELKEGDIVRK-LGSVVIRGDNIV 68
>gi|156937769|ref|YP_001435565.1| like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
gi|156566753|gb|ABU82158.1| Like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
Length = 73
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FD ++N+VL+DAEEV +++ +PLG IL++GD + +
Sbjct: 33 FDMHLNIVLEDAEEV--REDQTRPLGTILIRGDGVVFV 68
>gi|308806167|ref|XP_003080395.1| Sm-like protein (ISS) [Ostreococcus tauri]
gi|116058855|emb|CAL54562.1| Sm-like protein (ISS) [Ostreococcus tauri]
Length = 95
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS------GFDEYMNLVLDDAEEVHIKKNTRKPLGR--- 51
+ S V+R + P+ ++ + + GFD Y+N+VL+D E + N R GR
Sbjct: 16 LPSELVERCVGSPLWVLMKGEKEMTGTLRGFDVYVNMVLEDVTEYEMTANGRVETGRMDQ 75
Query: 52 ILLKGDNITLMMNTG 66
ILL G+N+ +++ G
Sbjct: 76 ILLNGNNVAILVPGG 90
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
R + +D++MNLVL D+EE+ + K LG I+++GDN+ L+
Sbjct: 27 VRGMLRSYDQHMNLVLSDSEEIQ-SDGSGKKLGTIVIRGDNVILI 70
>gi|393246263|gb|EJD53772.1| LSM-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 100
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD ++NLVLDDA++ + + PLG ++++G+++T M
Sbjct: 56 GFDIFLNLVLDDAQDESVPAQ-KAPLGTVVIRGNSVTSM 93
>gi|67541130|ref|XP_664339.1| hypothetical protein AN6735.2 [Aspergillus nidulans FGSC A4]
gi|40739363|gb|EAA58553.1| hypothetical protein AN6735.2 [Aspergillus nidulans FGSC A4]
Length = 91
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 25/70 (35%)
Query: 6 VQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI--- 41
++ + PI+ IF+ LQ GFDE+MNLV+DDA EV +
Sbjct: 9 ARKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLATK 68
Query: 42 -KKNTRKPLG 50
++ R+PLG
Sbjct: 69 SEEEKRRPLG 78
>gi|147921633|ref|YP_684550.1| small nuclear ribonucleoprotein [Methanocella arvoryzae MRE50]
gi|121685694|sp|Q0W8R9.1|RUXX_UNCMA RecName: Full=Putative snRNP Sm-like protein
gi|110619946|emb|CAJ35224.1| putative small nuclear ribonucleoprotein (snRNP) Sm-like protein
[Methanocella arvoryzae MRE50]
Length = 72
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR G+D +MNLVLD+AEE+ + +RK LG I+++GD +
Sbjct: 27 FRGELQGYDMHMNLVLDNAEELKENEASRK-LGTIIVRGDTVV 68
>gi|389860536|ref|YP_006362775.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
gi|388525439|gb|AFK50637.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
Length = 76
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+D+++N+VLDDAEEV ++RK LG ++++GD + L+
Sbjct: 35 YDQHLNIVLDDAEEVRGDGSSRK-LGTLVIRGDTVVLI 71
>gi|161527729|ref|YP_001581555.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339030|gb|ABX12117.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 78
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD++MNL+LD +EE+ + K LG I+++GDN+ ++
Sbjct: 34 GFDQHMNLLLDSSEEIP-AEGEAKGLGSIVVRGDNVVMI 71
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
R + +D++MNLVL D+EE+ + K LG I+++GDN+ L+
Sbjct: 32 VRGMLRSYDQHMNLVLSDSEEIQ-SDGSGKKLGTIVIRGDNVILI 75
>gi|440465859|gb|ELQ35159.1| hypothetical protein OOU_Y34scaffold00725g17 [Magnaporthe oryzae
Y34]
Length = 82
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
F L GFD+Y+N+VL+D E N K + +ILL G+NI +++ G+
Sbjct: 29 FSGLLVGFDDYVNMVLEDVTEFDYSGNYTK-MSKILLNGNNICMLIPGGE 77
>gi|325959826|ref|YP_004291292.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
gi|325331258|gb|ADZ10320.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
Length = 80
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR L FD +MNLVL++AEE+ T K LG +L++GDNI
Sbjct: 34 FRGLLKSFDMHMNLVLNEAEELD-GLETAKRLGIVLIRGDNIV 75
>gi|407921630|gb|EKG14771.1| hypothetical protein MPH_08046 [Macrophomina phaseolina MS6]
Length = 83
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E + N K L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYQGNQTK-LSKILLNGNNICMLIPGGE 77
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+D++MNLVL D+EE+ + K LG I+++GDN+ L+
Sbjct: 34 YDQHMNLVLSDSEEIQ-SDGSGKKLGTIVIRGDNVILI 70
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 19 RFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
R + +D++MNLVL D+EE+ + K LG I+++GDN+ L+
Sbjct: 31 RGMLRSYDQHMNLVLSDSEEIQ-SDGSGKKLGTIVIRGDNVILI 73
>gi|162606552|ref|XP_001713306.1| putative small nuclear ribonucleoprotein E [Guillardia theta]
gi|12580772|emb|CAC27090.1| putative small nuclear ribonucleoprotein E [Guillardia theta]
Length = 78
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 26/73 (35%)
Query: 10 MTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNTR-- 46
M QPIN +F+FL+ GFDE+MNLV+++ E KK++
Sbjct: 1 MIQPINQLFKFLKEKNLVTIIFKGSNDYILEGNLIGFDEFMNLVIENTTE---KKDSLIV 57
Query: 47 KPLGRILLKGDNI 59
+ LG +L+KGD+I
Sbjct: 58 RDLGYVLIKGDSI 70
>gi|389623205|ref|XP_003709256.1| U6 snRNA-associated Sm-like protein LSm5 [Magnaporthe oryzae
70-15]
gi|351648785|gb|EHA56644.1| U6 snRNA-associated Sm-like protein LSm5 [Magnaporthe oryzae
70-15]
gi|440486474|gb|ELQ66335.1| hypothetical protein OOW_P131scaffold00400g22 [Magnaporthe oryzae
P131]
Length = 82
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
F L GFD+Y+N+VL+D E N K + +ILL G+NI +++ G+
Sbjct: 29 FSGLLVGFDDYVNMVLEDVTEFDYSGNHTK-MSKILLNGNNICMLIPGGE 77
>gi|352682842|ref|YP_004893366.1| hypothetical protein TTX_1667 [Thermoproteus tenax Kra 1]
gi|350275641|emb|CCC82288.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Thermoproteus tenax Kra 1]
Length = 86
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 15 NLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
+++ R + S +D MNLVLD+AEE+ N + GRIL++G I
Sbjct: 32 DVVVRGVLSIYDSCMNLVLDNAEELDKVGNAKMRYGRILIRGSQI 76
>gi|386002644|ref|YP_005920943.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357210700|gb|AET65320.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 72
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR G+D +MNLVLD+ EE+ ++++K LG ++++GDN+ +
Sbjct: 27 FRGELQGYDIHMNLVLDNTEEIREGEDSKK-LGTVVVRGDNVVYI 70
>gi|20093660|ref|NP_613507.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Methanopyrus kandleri AV19]
gi|19886535|gb|AAM01437.1| Small nuclear ribonucleoprotein (snRNP) homolog [Methanopyrus
kandleri AV19]
Length = 73
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FD ++NLVLDD V I +++ LGR+L++GD++TL+
Sbjct: 32 FDGHLNLVLDDC--VEIDEDSEVRLGRVLIRGDSVTLI 67
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 75
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
R L +D++MNLVL D+EE+ +K +G I+++GDN+ L+
Sbjct: 27 VRGLLKSYDQHMNLVLSDSEEIQSDGEGKK-MGTIVIRGDNVILI 70
>gi|440302928|gb|ELP95234.1| small nuclear ribonucleoprotein G, putative [Entamoeba invadens
IP1]
Length = 88
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK-PLGRILLKGDNI 59
GFDEY+NLVLDDA + +N +K LG+IL++G+++
Sbjct: 39 GFDEYLNLVLDDAFDASHPENPQKIQLGQILIRGNSV 75
>gi|193891015|gb|ACF28661.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 94
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTG 66
GFD+Y+N+VLDD E +K L ILL G+NIT+M+ G
Sbjct: 40 GFDDYVNMVLDDVREYTFTPEGKKVTQLESILLNGNNITMMVPGG 84
>gi|161899071|ref|XP_001712762.1| mRNA splicing protein [Bigelowiella natans]
gi|75756255|gb|ABA27150.1| mRNA splicing protein [Bigelowiella natans]
Length = 80
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 22/74 (29%)
Query: 7 QRIMTQPINLIFRFLQS--------------------GFDEYMNLVLDDAEEVHIKKNTR 46
+++M PINL++R+L GFDEYMN+VL +A V K
Sbjct: 2 KKLMVHPINLLYRYLIGKNIILVCLKEKNKTINGKIIGFDEYMNIVLSEA--VAKNKEVE 59
Query: 47 KPLGRILLKGDNIT 60
K IL+KG+ I+
Sbjct: 60 KIKNLILVKGNQIS 73
>gi|407464208|ref|YP_006775090.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047396|gb|AFS82148.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 76
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 28/35 (80%), Gaps = 2/35 (5%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
FD +MNL L+DAE+V +K+ + LG+ILL+GDNI
Sbjct: 34 FDIHMNLTLEDAEDVTEEKHEK--LGKILLRGDNI 66
>gi|429216595|ref|YP_007174585.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133124|gb|AFZ70136.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 79
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 23 SGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 66
+ +D+++NL+L+ AEE+ K +PLG +LL+GDN+ + G
Sbjct: 38 TSYDQHLNLILEKAEELEGK--VSRPLGLVLLRGDNVIAVSPAG 79
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
R L +D++MNLVL D+EE+ +K +G I+++GDN+ L+
Sbjct: 30 VRGLLKSYDQHMNLVLSDSEEIQSDGGGKK-MGTIVIRGDNVILI 73
>gi|363753790|ref|XP_003647111.1| hypothetical protein Ecym_5554 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890747|gb|AET40294.1| hypothetical protein Ecym_5554 [Eremothecium cymbalariae
DBVPG#7215]
Length = 82
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 6 VQRIMTQPINLI------FRFLQSGFDEYMNLVLDDAEEVH-IKKNTRKPLGRILLKGDN 58
+ + + QPI ++ F GFD+++N+V++D E + K ++ G++LL G+N
Sbjct: 12 IDKTINQPIWILLTSNREFTGTLVGFDDFVNVVIEDVIEYEGVDKEVKRHHGKMLLSGNN 71
Query: 59 ITLMMNTGK 67
IT+++ GK
Sbjct: 72 ITMLVPGGK 80
>gi|403372169|gb|EJY85976.1| Small nuclear ribonucleoprotein G, putative [Oxytricha trifallax]
Length = 709
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
G+D+++N+VLD+A E+ I K+ ++ LG I+++G+++ + N K
Sbjct: 35 GYDQFLNIVLDNAIEI-INKDEKRELGTIVIRGNSVVMWENLDK 77
>gi|257076617|ref|ZP_05570978.1| snRNP Sm-like protein [Ferroplasma acidarmanus fer1]
Length = 71
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
G+DEYMN+ LDDAEE ++ +G+++++G N+
Sbjct: 33 GYDEYMNMTLDDAEE---NGEVQRKIGKVIIRGSNV 65
>gi|45201226|ref|NP_986796.1| AGR130Wp [Ashbya gossypii ATCC 10895]
gi|44986080|gb|AAS54620.1| AGR130Wp [Ashbya gossypii ATCC 10895]
gi|374110045|gb|AEY98950.1| FAGR130Wp [Ashbya gossypii FDAG1]
Length = 80
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 6 VQRIMTQPINLI------FRFLQSGFDEYMNLVLDDAEEVHIK-KNTRKPLGRILLKGDN 58
+ R + QPI ++ F GFD+++N+V++D E + ++ GR+LL G+N
Sbjct: 9 IDRAINQPIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEYDAPDRAVKRHPGRMLLSGNN 68
Query: 59 ITLMMNTGK 67
IT+++ GK
Sbjct: 69 ITVLVPGGK 77
>gi|327401120|ref|YP_004341959.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
gi|327316628|gb|AEA47244.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
Length = 74
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR + +G+D +MNLVL +AEE+ + RK LG ++++GD + +
Sbjct: 27 FRGILNGYDIHMNLVLQNAEEIQGGEVIRK-LGSVVIRGDTVVFV 70
>gi|393215720|gb|EJD01211.1| like-Sm ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 77
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD ++NLVLDDA E + P+G ++++G+++TLM
Sbjct: 33 GFDIFLNLVLDDAIE-ETTPAQKSPIGNVVIRGNSVTLM 70
>gi|164426888|ref|XP_001728350.1| hypothetical protein NCU03766 [Neurospora crassa OR74A]
gi|157071516|gb|EDO65259.1| hypothetical protein NCU03766 [Neurospora crassa OR74A]
Length = 65
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 11 TQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
+Q + L F GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 3 SQLLPLEFAGTLVGFDDYVNMVLEDVTEFDYSGNHTK-LKKILLNGNNICMLIPGGE 58
>gi|284162105|ref|YP_003400728.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284012102|gb|ADB58055.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 74
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR + +G+D +MN+VL++AEE+ + RK LG ++++GD + +
Sbjct: 27 FRGILNGYDIHMNIVLENAEEIQNGEVVRK-LGSVVIRGDTVVFV 70
>gi|145348592|ref|XP_001418730.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578960|gb|ABO97023.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 93
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS------GFDEYMNLVLDDAEEVHIKKNTRKPLGR--- 51
+ S V+R + P+ ++ + + GFD Y+N+VL+D E R+ GR
Sbjct: 16 LPSELVERCVGSPLWVLMKSERELVGTLRGFDVYVNMVLEDVTEYETTAEGRRVTGRLDQ 75
Query: 52 ILLKGDNITLMMNTG 66
ILL G+NI +++ G
Sbjct: 76 ILLNGNNIAMLVPGG 90
>gi|354485537|ref|XP_003504940.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Cricetulus griseus]
Length = 140
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 91 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 136
>gi|329765753|ref|ZP_08257322.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137819|gb|EGG42086.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 76
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
FD +MNL LD+AE+ I N LGRILL+GDNI
Sbjct: 34 FDIHMNLTLDNAED--ISDNKVVSLGRILLRGDNI 66
>gi|167043902|gb|ABZ08590.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG3H9]
gi|167044597|gb|ABZ09270.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG7F11]
Length = 76
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD++MNL+LD AEE+ + LG ++++GDN+ ++
Sbjct: 34 GFDQHMNLLLDQAEEI-LSDGDSNSLGSLVVRGDNVVMI 71
>gi|310792345|gb|EFQ27872.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 82
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGNHTK-LSKILLNGNNICMLIPGGE 77
>gi|350539912|ref|NP_001232310.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129593|gb|ACH46091.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129594|gb|ACH46092.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129595|gb|ACH46093.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129831|gb|ACH46329.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129908|gb|ACH46406.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
Length = 91
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 87
>gi|197129592|gb|ACH46090.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
Length = 91
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 87
>gi|317420150|emb|CBN82186.1| U6 snRNA-associated Sm-like protein LSm5 [Dicentrarchus labrax]
Length = 91
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLIPGGE 87
>gi|393219456|gb|EJD04943.1| U6 snRNA-associated Sm-like protein LSm7 [Fomitiporia mediterranea
MF3/22]
Length = 134
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 24 GFDEYMNLVLDDAEE-VHIKKNTRKPLGRILLKGDNITLM 62
G+D+ +NLVLDD EE +H + ++ LG ++L+G ITL+
Sbjct: 77 GYDQLLNLVLDDVEEQLHEPEPRKRSLGLVVLRGPTITLL 116
>gi|147901169|ref|NP_001087187.1| U6 snRNA-associated Sm-like protein LSm5 [Xenopus laevis]
gi|51873770|gb|AAH78466.1| MGC85219 protein [Xenopus laevis]
Length = 91
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 87
>gi|282164954|ref|YP_003357339.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282157268|dbj|BAI62356.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 72
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR G+D +MNLVLD+AEE+ + ++K LG I+++GD +
Sbjct: 27 FRGELQGYDMHMNLVLDNAEELKENEESKK-LGTIIVRGDTVV 68
>gi|229366148|gb|ACQ58054.1| U6 snRNA-associated Sm-like protein LSm5 [Anoplopoma fimbria]
Length = 91
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLIPGGE 87
>gi|213982795|ref|NP_001135569.1| U6 snRNA-associated Sm-like protein LSm5 [Xenopus (Silurana)
tropicalis]
gi|195539827|gb|AAI68072.1| Unknown (protein for MGC:185877) [Xenopus (Silurana) tropicalis]
Length = 91
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 87
>gi|261245080|ref|NP_001140132.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221220780|gb|ACM09051.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221222120|gb|ACM09721.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|225715330|gb|ACO13511.1| U6 snRNA-associated Sm-like protein LSm5 [Esox lucius]
Length = 91
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLIPGGE 87
>gi|395517528|ref|XP_003762928.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Sarcophilus harrisii]
Length = 140
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 91 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 136
>gi|432929710|ref|XP_004081239.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Oryzias
latipes]
Length = 91
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLIPGGE 87
>gi|326922224|ref|XP_003207351.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Meleagris gallopavo]
gi|363730150|ref|XP_418849.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Gallus
gallus]
Length = 91
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 87
>gi|149025174|gb|EDL81541.1| rCG64141 [Rattus norvegicus]
Length = 94
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 45 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 90
>gi|154426284|ref|NP_001093908.1| U6 snRNA-associated Sm-like protein LSm5 [Danio rerio]
gi|152012711|gb|AAI50415.1| Zgc:171959 protein [Danio rerio]
Length = 91
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLIPGGE 87
>gi|387915912|gb|AFK11565.1| U6 snRNA-associated Sm-like protein LSm5 [Callorhinchus milii]
Length = 90
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 41 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLIPGGE 86
>gi|348503608|ref|XP_003439356.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Oreochromis niloticus]
gi|348503610|ref|XP_003439357.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Oreochromis niloticus]
Length = 88
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 39 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLIPGGE 84
>gi|193890979|gb|ACF28643.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 82
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTG 66
GFD+Y+N+VLDD E +K L ILL G+NIT+M+ G
Sbjct: 28 GFDDYVNMVLDDVREYTFTPEGKKVTQLESILLNGNNITMMVPGG 72
>gi|396458116|ref|XP_003833671.1| similar to U6 snRNA-associated Sm-like protein LSm5
[Leptosphaeria maculans JN3]
gi|312210219|emb|CBX90306.1| similar to U6 snRNA-associated Sm-like protein LSm5
[Leptosphaeria maculans JN3]
Length = 84
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 66
GFD+Y+N+VL+D E+ + K L +ILL G+NI +M+ G
Sbjct: 36 GFDDYVNMVLEDVTEIDASEGNVK-LPKILLNGNNICMMVPGG 77
>gi|212532417|ref|XP_002146365.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
gi|210071729|gb|EEA25818.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
Length = 83
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+N+ +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYAGNQEK-LPKILLNGNNVCMLIPGGE 77
>gi|6912488|ref|NP_036454.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Homo sapiens]
gi|13384942|ref|NP_079796.1| U6 snRNA-associated Sm-like protein LSm5 [Mus musculus]
gi|114053307|ref|NP_001040018.1| U6 snRNA-associated Sm-like protein LSm5 [Bos taurus]
gi|157822947|ref|NP_001100759.1| U6 snRNA-associated Sm-like protein LSm5 [Rattus norvegicus]
gi|197101673|ref|NP_001126628.1| U6 snRNA-associated Sm-like protein LSm5 [Pongo abelii]
gi|383873354|ref|NP_001244745.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca mulatta]
gi|55628382|ref|XP_519030.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 3
[Pan troglodytes]
gi|73976577|ref|XP_854477.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Canis lupus
familiaris]
gi|149705702|ref|XP_001500867.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Equus
caballus]
gi|291394638|ref|XP_002713789.1| PREDICTED: LSM5 homolog, U6 small nuclear RNA associated
[Oryctolagus cuniculus]
gi|296209016|ref|XP_002751358.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Callithrix jacchus]
gi|301772952|ref|XP_002921890.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Ailuropoda melanoleuca]
gi|332242762|ref|XP_003270553.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Nomascus leucogenys]
gi|335305486|ref|XP_003360223.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Sus
scrofa]
gi|344270397|ref|XP_003407031.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Loxodonta africana]
gi|348568734|ref|XP_003470153.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cavia
porcellus]
gi|395831025|ref|XP_003788612.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Otolemur garnettii]
gi|397527112|ref|XP_003833447.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Pan
paniscus]
gi|402863784|ref|XP_003896179.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Papio anubis]
gi|403278350|ref|XP_003930776.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Saimiri
boliviensis boliviensis]
gi|407262510|ref|XP_003946397.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Mus
musculus]
gi|410952602|ref|XP_003982968.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Felis catus]
gi|426227726|ref|XP_004007967.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Ovis aries]
gi|426355879|ref|XP_004045331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Gorilla gorilla gorilla]
gi|426355881|ref|XP_004045332.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Gorilla gorilla gorilla]
gi|10720081|sp|Q9Y4Y9.3|LSM5_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|52783752|sp|P62322.2|LSM5_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|75054789|sp|Q5R628.3|LSM5_PONAB RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|116256439|sp|Q2HJH0.3|LSM5_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|5919151|gb|AAD56229.1|AF182291_1 U6 snRNA-associated Sm-like protein LSm5 [Homo sapiens]
gi|5262860|emb|CAB45868.1| Lsm5 protein [Homo sapiens]
gi|12844520|dbj|BAB26394.1| unnamed protein product [Mus musculus]
gi|12847199|dbj|BAB27475.1| unnamed protein product [Mus musculus]
gi|13543565|gb|AAH05938.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|38512042|gb|AAH61085.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|51105856|gb|EAL24440.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|55732167|emb|CAH92788.1| hypothetical protein [Pongo abelii]
gi|55930921|gb|AAH48459.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|88682880|gb|AAI05405.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119614397|gb|EAW93991.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Homo sapiens]
gi|124376122|gb|AAI32627.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|124376508|gb|AAI32629.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|148672763|gb|EDL04710.1| mCG13108, isoform CRA_a [Mus musculus]
gi|149033255|gb|EDL88056.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_c [Rattus norvegicus]
gi|208966684|dbj|BAG73356.1| LSM5 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296488471|tpg|DAA30584.1| TPA: U6 snRNA-associated Sm-like protein LSm5 [Bos taurus]
gi|312153290|gb|ADQ33157.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|355560708|gb|EHH17394.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca mulatta]
gi|380811262|gb|AFE77506.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|383417167|gb|AFH31797.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|384941550|gb|AFI34380.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|410223678|gb|JAA09058.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410255044|gb|JAA15489.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410354065|gb|JAA43636.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395572|gb|JAA44840.1| Putative u6 snrna-associated sm-like protein [Desmodus rotundus]
gi|440911522|gb|ELR61182.1| U6 snRNA-associated Sm-like protein LSm5 [Bos grunniens mutus]
Length = 91
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 87
>gi|392341168|ref|XP_003754272.1| PREDICTED: hypothetical protein LOC685221 [Rattus norvegicus]
gi|392348953|ref|XP_002729703.2| PREDICTED: hypothetical protein LOC685221 [Rattus norvegicus]
Length = 94
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 45 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 90
>gi|383320750|ref|YP_005381591.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
gi|379322120|gb|AFD01073.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
Length = 72
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR G+D +MNLVL++AEE+ + +RK LG I+++GD +
Sbjct: 27 FRGELQGYDMHMNLVLENAEELKENEESRK-LGTIIVRGDTVV 68
>gi|70606993|ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
gi|68567641|gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
Length = 79
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 17 IFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
I R +D +MNLVL+++EE+ +TRK +G I+++GDN+ L+
Sbjct: 32 IVRGTLKSYDMHMNLVLENSEEIMNDGSTRK-VGTIVIRGDNVILV 76
>gi|196001101|ref|XP_002110418.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190586369|gb|EDV26422.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 84
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E + R+ L +ILL G+NIT+M+ G+
Sbjct: 36 GFDDFVNMVLEDVTEYETTADGRRVTKLDQILLNGNNITMMVPGGE 81
>gi|407461851|ref|YP_006773168.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045473|gb|AFS80226.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 75
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
FD +MNL L++AE+V +K PLG++LL+GDNI
Sbjct: 34 FDIHMNLTLENAEDVSEEK--PDPLGKVLLRGDNI 66
>gi|358392255|gb|EHK41659.1| hypothetical protein TRIATDRAFT_250596 [Trichoderma atroviride
IMI 206040]
Length = 84
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGNHTK-LPKILLNGNNICMLIPGGE 77
>gi|288932200|ref|YP_003436260.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288894448|gb|ADC65985.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 73
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR G+D +MNLVL DAEE+ + RK LG ++++GD + +
Sbjct: 26 FRGTLDGYDIHMNLVLVDAEEIQNGEVVRK-LGSVVIRGDTVVFV 69
>gi|380474440|emb|CCF45778.1| U6 snRNA-associated Sm-like protein LSm5 [Colletotrichum
higginsianum]
Length = 82
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGNHTK-LPKILLNGNNICMLIPGGE 77
>gi|320101466|ref|YP_004177058.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319753818|gb|ADV65576.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 75
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FD+++N+VLDD EE+ + RK LG ++++GD + L+
Sbjct: 34 FDQHLNIVLDDTEEIRGDGSVRK-LGTVVIRGDTVVLI 70
>gi|307104476|gb|EFN52729.1| hypothetical protein CHLNCDRAFT_138271 [Chlorella variabilis]
Length = 99
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
R + +GFD ++N+VL+D E I +K L +ILL G+NI +++ GK
Sbjct: 44 LRRVAAGFDVFVNMVLEDVTEYEITPEGKKVTHLDQILLNGNNIAVLVPGGK 95
>gi|358389647|gb|EHK27239.1| hypothetical protein TRIVIDRAFT_73167 [Trichoderma virens Gv29-8]
Length = 84
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGNHTK-LPKILLNGNNICMLIPGGE 77
>gi|449067225|ref|YP_007434307.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449069496|ref|YP_007436577.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
gi|449035733|gb|AGE71159.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449038004|gb|AGE73429.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
Length = 73
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 17 IFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
I R +D +MNLVL+++EE+ +TRK +G I+++GDN+ L+
Sbjct: 26 IVRGTLKSYDMHMNLVLENSEEIMNDGSTRK-VGTIVIRGDNVILV 70
>gi|300123719|emb|CBK24991.2| unnamed protein product [Blastocystis hominis]
Length = 77
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 15 NLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
N I + G+D+ MN+VL+D EV + +N ++ +GR++++G+ I M
Sbjct: 24 NRIVEGVLRGYDQMMNIVLEDVYEV-VNENEKQEMGRVVIRGNGIIQM 70
>gi|392580035|gb|EIW73162.1| hypothetical protein TREMEDRAFT_24108, partial [Tremella
mesenterica DSM 1558]
Length = 79
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 65
GFD+ MNLV+DD E + LG ++L+G NITL++ T
Sbjct: 35 GFDQLMNLVMDDVVEEFENGMPSRSLGLVVLRGPNITLILPT 76
>gi|342878459|gb|EGU79796.1| hypothetical protein FOXB_09655 [Fusarium oxysporum Fo5176]
gi|408388349|gb|EKJ68035.1| hypothetical protein FPSE_11846 [Fusarium pseudograminearum
CS3096]
Length = 83
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGNHTK-LPKILLNGNNICMLIPGGE 77
>gi|403216723|emb|CCK71219.1| hypothetical protein KNAG_0G01610 [Kazachstania naganishii CBS
8797]
Length = 86
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 10/72 (13%)
Query: 6 VQRIMTQPINLI------FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPL----GRILLK 55
+ + ++QP+ +I F GFD+++N++++DA E + + + GR+LL
Sbjct: 12 IDKTISQPVWIILQSNREFTGTLVGFDDFVNVIIEDAVEWTVTDGKSEKIMEHHGRMLLS 71
Query: 56 GDNITLMMNTGK 67
G+NI +++ GK
Sbjct: 72 GNNIVMLVPGGK 83
>gi|242775508|ref|XP_002478658.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722277|gb|EED21695.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
stipitatus ATCC 10500]
Length = 105
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+N+ +++ G+
Sbjct: 57 GFDDYVNMVLEDVTEFDYAGNQEK-LPKILLNGNNVCMLIPGGE 99
>gi|67539018|ref|XP_663283.1| hypothetical protein AN5679.2 [Aspergillus nidulans FGSC A4]
gi|40743582|gb|EAA62772.1| hypothetical protein AN5679.2 [Aspergillus nidulans FGSC A4]
Length = 110
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
S ++ +Q + L F GFD+Y+N+VL+D E K L +ILL G+NI ++
Sbjct: 41 SPAYPKMASQLLPLEFSGTLLGFDDYVNMVLEDVTEFDYTGAQVK-LPKILLNGNNICML 99
Query: 63 MNTGK 67
+ G+
Sbjct: 100 IPGGE 104
>gi|351699507|gb|EHB02426.1| U6 snRNA-associated Sm-like protein LSm5, partial [Heterocephalus
glaber]
Length = 82
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 33 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 78
>gi|302909361|ref|XP_003050056.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730993|gb|EEU44343.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 83
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGNHTK-LPKILLNGNNICMLIPGGE 77
>gi|195222722|ref|NP_001124182.1| U6 snRNA-associated Sm-like protein LSm5 isoform b [Homo sapiens]
gi|213385305|ref|NP_001132971.1| U6 snRNA-associated Sm-like protein LSm5 isoform b [Homo sapiens]
gi|332242764|ref|XP_003270554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Nomascus leucogenys]
gi|332242766|ref|XP_003270555.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 3
[Nomascus leucogenys]
gi|332242768|ref|XP_003270556.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 4
[Nomascus leucogenys]
gi|332864463|ref|XP_003318296.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Pan troglodytes]
gi|332864465|ref|XP_003318297.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Pan troglodytes]
gi|402863786|ref|XP_003896180.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Papio anubis]
gi|410058757|ref|XP_003951029.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Pan
troglodytes]
gi|410058759|ref|XP_003951030.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Pan
troglodytes]
gi|426355883|ref|XP_004045333.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
3 [Gorilla gorilla gorilla]
gi|426355885|ref|XP_004045334.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
4 [Gorilla gorilla gorilla]
gi|426355887|ref|XP_004045335.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
5 [Gorilla gorilla gorilla]
gi|426355889|ref|XP_004045336.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
6 [Gorilla gorilla gorilla]
gi|441650806|ref|XP_004091023.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Nomascus
leucogenys]
gi|344235531|gb|EGV91634.1| U6 snRNA-associated Sm-like protein LSm5 [Cricetulus griseus]
Length = 62
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 13 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 58
>gi|46124883|ref|XP_386995.1| hypothetical protein FG06819.1 [Gibberella zeae PH-1]
Length = 89
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 41 GFDDYVNMVLEDVTEFDYSGNHTK-LPKILLNGNNICMLIPGGE 83
>gi|339249593|ref|XP_003373784.1| putative LSM domain protein [Trichinella spiralis]
gi|316970025|gb|EFV54033.1| putative LSM domain protein [Trichinella spiralis]
Length = 229
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 9/52 (17%)
Query: 20 FLQSGFDEYMNLVLDDAEEVH---------IKKNTRKPLGRILLKGDNITLM 62
FL++ FD+YMN+VL D EE ++ ++ LG ILL+G++I M
Sbjct: 69 FLRTTFDKYMNVVLSDCEEFRRYRPKEGRTAEREEKRTLGFILLRGEHIVSM 120
>gi|336473000|gb|EGO61160.1| hypothetical protein NEUTE1DRAFT_116005 [Neurospora tetrasperma
FGSC 2508]
gi|350293750|gb|EGZ74835.1| putative U6 SNRNA-associated SM-LIKE protein LSM5 [Neurospora
tetrasperma FGSC 2509]
gi|380092260|emb|CCC10036.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 84
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGNHTK-LKKILLNGNNICMLIPGGE 77
>gi|281343311|gb|EFB18895.1| hypothetical protein PANDA_010826 [Ailuropoda melanoleuca]
Length = 79
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 30 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 75
>gi|126336758|ref|XP_001371876.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Monodelphis domestica]
Length = 166
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLM 62
GFD+++N+VL+D E I R+ L +ILL G+NIT+M
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMM 82
>gi|16944624|emb|CAD11394.1| probable U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Neurospora
crassa]
Length = 84
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGNHTK-LKKILLNGNNICMLIPGGE 77
>gi|355700152|gb|AES01357.1| LSM5-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 76
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 27 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 72
>gi|358054346|dbj|GAA99272.1| hypothetical protein E5Q_05966 [Mixia osmundae IAM 14324]
Length = 83
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKP--LGRILLKGDNITLMMNTG 66
GFD+++N+VLDD E RK LG+ LL G+NI +++ G
Sbjct: 35 GFDDFVNMVLDDVTEYENTAQGRKATKLGQTLLNGNNIAMLIPGG 79
>gi|410909464|ref|XP_003968210.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Takifugu rubripes]
gi|47225103|emb|CAF98730.1| unnamed protein product [Tetraodon nigroviridis]
Length = 88
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E + R+ L +ILL G+NIT+++ G+
Sbjct: 39 GFDDFVNMVLEDVTEFEVTPEGRRITKLDQILLNGNNITMLIPGGE 84
>gi|367025621|ref|XP_003662095.1| hypothetical protein MYCTH_2302246 [Myceliophthora thermophila
ATCC 42464]
gi|347009363|gb|AEO56850.1| hypothetical protein MYCTH_2302246 [Myceliophthora thermophila
ATCC 42464]
Length = 85
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGNHTK-LKKILLNGNNICMLIPGGE 77
>gi|330934258|ref|XP_003304477.1| hypothetical protein PTT_17081 [Pyrenophora teres f. teres 0-1]
gi|311318880|gb|EFQ87428.1| hypothetical protein PTT_17081 [Pyrenophora teres f. teres 0-1]
Length = 94
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 66
GFD+Y+N+VL+D E+ + K L +ILL G+NI +M+ G
Sbjct: 44 GFDDYVNMVLEDVTEIDPAEGNVK-LPKILLNGNNICMMVPGG 85
>gi|301107352|ref|XP_002902758.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262097876|gb|EEY55928.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 62
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKP--LGRILLKGDNITLMMNTG 66
GFD+Y+N+VLDD E I ++ L ++LL G+N+ L++ G
Sbjct: 13 GFDDYVNMVLDDVTEYEITPEGKREVKLDQVLLNGNNVCLLVPGG 57
>gi|391338472|ref|XP_003743582.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Metaseiulus occidentalis]
Length = 83
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 3 STKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNIT 60
+++ IM L+ L GFD+Y+N+VL+D E + R+ L +I+L G NIT
Sbjct: 15 GSRIHIIMKNDKELVGTLL--GFDDYVNMVLEDVTEYENSSDGRRVTKLDQIILNGSNIT 72
Query: 61 LMMNTG 66
+M+ G
Sbjct: 73 MMVPGG 78
>gi|330835854|ref|YP_004410582.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567993|gb|AEB96098.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 75
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 20 FLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+L+S +D++MNLVL D+ E+ N K +G I+++GDN+ L+
Sbjct: 30 YLKS-YDQHMNLVLSDSVEIQ-NNNDEKKMGTIVIRGDNVILI 70
>gi|313213177|emb|CBY37031.1| unnamed protein product [Oikopleura dioica]
gi|313226437|emb|CBY21582.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFDE++N+VL+D E + +K L +ILL G+NIT+++ G+
Sbjct: 35 GFDEFVNMVLEDVTEYEATSDGKKITKLEQILLNGNNITMLVPGGE 80
>gi|402871503|ref|XP_003899701.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Papio
anubis]
Length = 91
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLQDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 87
>gi|161527857|ref|YP_001581683.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339158|gb|ABX12245.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 80
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
FD +MNL L++AE+V +K P+G++LL+GDNI
Sbjct: 37 FDIHMNLTLENAEDVSEEK--PNPIGKVLLRGDNI 69
>gi|403363323|gb|EJY81404.1| Small nuclear ribonucleoprotein polypeptide G [Oxytricha
trifallax]
Length = 79
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
G+D+++N+VLD+A E+ I K+ ++ LG I+++G+++ + N K
Sbjct: 35 GYDQFLNIVLDNAIEI-INKDEKRELGTIVIRGNSVVMWENLDK 77
>gi|84489967|ref|YP_448199.1| small nuclear ribonucleoprotein [Methanosphaera stadtmanae DSM
3091]
gi|84373286|gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM
3091]
Length = 81
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR FD +MNLVL+DAEE+ ++ + LG +L++GDNI +
Sbjct: 35 FRGALQSFDMHMNLVLNDAEEIKDGESICR-LGVVLVRGDNIVYI 78
>gi|355691296|gb|EHH26481.1| hypothetical protein EGK_16467 [Macaca mulatta]
Length = 91
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLQDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 87
>gi|340522327|gb|EGR52560.1| predicted protein [Trichoderma reesei QM6a]
Length = 84
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYTGNHTK-LPKILLNGNNICMLIPGGE 77
>gi|400596491|gb|EJP64262.1| putative U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Beauveria
bassiana ARSEF 2860]
Length = 82
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYTGNHTK-LPKILLNGNNICMLIPGGE 77
>gi|339245769|ref|XP_003374518.1| putative small nuclear ribonucleoprotein G [Trichinella spiralis]
gi|316972305|gb|EFV55988.1| putative small nuclear ribonucleoprotein G [Trichinella spiralis]
Length = 76
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+V+D+A E H+K + +G ++++G+++TLM
Sbjct: 33 GFDPFMNMVIDEAVE-HLKTGEQIMIGMVVVRGNSVTLM 70
>gi|13541906|ref|NP_111594.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Thermoplasma volcanium GSS1]
gi|14325338|dbj|BAB60242.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 71
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 15 NLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
N + +G+D+YMN+VLDD +E +N + LG ++++G N+
Sbjct: 23 NRVLEGTLTGYDDYMNMVLDDVDENS--ENVSRKLGTVVIRGSNVV 66
>gi|340344218|ref|ZP_08667350.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519359|gb|EGP93082.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 76
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
FD +MNL L+DAE++ K + LG+ILL+GDNI
Sbjct: 34 FDVHMNLTLEDAEDISDGKTVK--LGKILLRGDNI 66
>gi|255719860|ref|XP_002556210.1| KLTH0H07612p [Lachancea thermotolerans]
gi|238942176|emb|CAR30348.1| KLTH0H07612p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 31/44 (70%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
G+D+++N+VL+D E + ++ G++LL G+NI++++ GK
Sbjct: 36 GYDDFVNVVLEDVIEYDHDQEIKRHAGKMLLSGNNISMLVPGGK 79
>gi|156540632|ref|XP_001599264.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B
[Nasonia vitripennis]
Length = 217
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 9/44 (20%)
Query: 25 FDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNI 59
FD++MNL+L D EE IK KNT++P LG +LL+G+NI
Sbjct: 34 FDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLLRGENI 77
>gi|391346676|ref|XP_003747595.1| PREDICTED: small nuclear ribonucleoprotein G-like [Metaseiulus
occidentalis]
Length = 76
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+VL++A E +K R P+G +++G++I L+
Sbjct: 33 GFDPFMNIVLEEAFE-EVKGGQRTPIGMTVIRGNSIVLL 70
>gi|346325284|gb|EGX94881.1| small nuclear ribonucleoprotein [Cordyceps militaris CM01]
Length = 83
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFSDYTGNHTKLPKILLNGNNICMLIPGGE 78
>gi|58258057|ref|XP_566441.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57222578|gb|AAW40622.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 216
Score = 37.7 bits (86), Expect = 0.92, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKN--TRKPLGRILLKGDNITLMMNT 65
GFD+Y+N+VL D +E + + T LG LL G+NI ++ T
Sbjct: 35 GFDDYVNMVLKDVKEYEVTASGITETDLGDTLLNGNNIAMVRTT 78
>gi|116753552|ref|YP_842670.1| small nuclear ribonucleoprotein [Methanosaeta thermophila PT]
gi|116665003|gb|ABK14030.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 71
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR G+D +MNLVL++ EE I + T + +G ++++GDN+ +
Sbjct: 27 FRGELQGYDIHMNLVLENTEE--IAEGTARKIGAVIVRGDNVVYI 69
>gi|313240518|emb|CBY32850.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTG 66
GFDE++N+VL+D E + +K L +ILL G+NIT+++ G
Sbjct: 35 GFDEFVNMVLEDVTEYEATSDGKKITKLEQILLNGNNITMLVPGG 79
>gi|307193681|gb|EFN76364.1| Small nuclear ribonucleoprotein-associated protein B
[Harpegnathos saltator]
Length = 208
Score = 37.7 bits (86), Expect = 1.00, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 9/45 (20%)
Query: 24 GFDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNI 59
FD++MNL+L D EE IK KNT++P LG +LL+G+NI
Sbjct: 25 AFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLLRGENI 69
>gi|154275866|ref|XP_001538778.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413851|gb|EDN09216.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 104
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E + K L +ILL G+NI +++ G+
Sbjct: 55 GFDDYVNMVLEDVTEFDYTGSQTK-LSKILLNGNNICMLIPGGE 97
>gi|332022693|gb|EGI62970.1| Small nuclear ribonucleoprotein-associated protein B [Acromyrmex
echinatior]
Length = 207
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 9/45 (20%)
Query: 25 FDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNIT 60
FD++MNL+L D EE IK KNT++P LG +LL+G+NI
Sbjct: 34 FDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLLRGENIV 78
>gi|429327489|gb|AFZ79249.1| small nuclear ribonucleoprotein-associated protein B, putative
[Babesia equi]
Length = 153
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
Query: 25 FDEYMNLVLDDAEEVHIKKNT-----RKPLGRILLKGDNI 59
FD++MNLVL D EE + K ++ LG ILL+G+NI
Sbjct: 33 FDKHMNLVLADCEEFRMTKGKEGKEIKRTLGFILLRGENI 72
>gi|195134290|ref|XP_002011570.1| GI11102 [Drosophila mojavensis]
gi|195399181|ref|XP_002058199.1| GJ15956 [Drosophila virilis]
gi|193906693|gb|EDW05560.1| GI11102 [Drosophila mojavensis]
gi|194150623|gb|EDW66307.1| GJ15956 [Drosophila virilis]
Length = 76
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 33 GFDPFMNVVLDDTVE-ECKDNTKNSIGMVVIRGNSIVMV 70
>gi|84995270|ref|XP_952357.1| small nuclear ribonucleoprotein associated protein b [Theileria
annulata strain Ankara]
gi|65302518|emb|CAI74625.1| small nuclear ribonucleoprotein associated protein b, putative
[Theileria annulata]
Length = 155
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 25 FDEYMNLVLDDAEEVHI-------KKNTRKPLGRILLKGDNI 59
FD+YMNLVL D EE + + ++ LG +LL+G+NI
Sbjct: 33 FDKYMNLVLSDCEEFRMTLGKDKNRTEVKRTLGFVLLRGENI 74
>gi|170291026|ref|YP_001737842.1| Sm ribonucleoprotein core-like protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175106|gb|ACB08159.1| Sm ribonucleoprotein core-like protein [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 80
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
R + +D ++NL+LD+AEE+ ++ N +K R+L++GDN+
Sbjct: 26 VRGILKSYDNHLNLILDNAEEI-MEGNAKKLGKRVLIRGDNV 66
>gi|291239259|ref|XP_002739539.1| PREDICTED: small nuclear ribonucleoprotein polypeptide N-like
[Saccoglossus kowalevskii]
Length = 228
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 19/76 (25%)
Query: 10 MTQPINLIFRF-LQSG---------FDEYMNLVLDDAEEVH-IK-KNTRKP-------LG 50
M Q IN R +Q G FD++MNL+L D EE IK KNT++P LG
Sbjct: 9 MLQHINFRMRIAIQDGRIFIGTFLAFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLG 68
Query: 51 RILLKGDNITLMMNTG 66
+LL+G+++ M G
Sbjct: 69 LVLLRGEHLVSMTVEG 84
>gi|119178728|ref|XP_001241003.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 91
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 21/55 (38%)
Query: 8 RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+ + QPI+ IF+ LQ GFDE+MNLV+DDA EV +
Sbjct: 11 KTLLQPIHFIFKLLQQRSTVSIWLYEQLAVRIEGKIRGFDEFMNLVIDDAVEVRV 65
>gi|443896082|dbj|GAC73426.1| U6 snRNA-associated Sm-like protein [Pseudozyma antarctica T-34]
Length = 103
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK---PLGRILLKGDNITLMM 63
GFD+Y+N+VL+D E ++ +K LG+ LL G+NI +++
Sbjct: 52 GFDDYVNMVLEDVTEYETAQDGKKKKTKLGQTLLNGNNICMLI 94
>gi|330038664|ref|XP_003239663.1| small nuclear ribonucleoprotein E [Cryptomonas paramecium]
gi|327206587|gb|AEA38765.1| small nuclear ribonucleoprotein E [Cryptomonas paramecium]
Length = 49
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
GFDE+MNLVL ++ ++ +K LG+ ++KGD+I
Sbjct: 7 GFDEFMNLVLSESYQIDF-SGQKKFLGKAMIKGDSIA 42
>gi|219851061|ref|YP_002465493.1| Sm ribonucleoprotein-like protein [Methanosphaerula palustris
E1-9c]
gi|219545320|gb|ACL15770.1| Like-Sm ribonucleoprotein core [Methanosphaerula palustris E1-9c]
Length = 75
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 66
R + G+D +MNLVLD AEEV + +G ++++GDN+ + +G
Sbjct: 28 LRGVLQGYDVHMNLVLDKAEEV--TDGATQKIGTLIVRGDNVIYISPSG 74
>gi|134105981|ref|XP_778001.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260704|gb|EAL23354.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 216
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKN--TRKPLGRILLKGDNITLMMNT 65
GFD+Y+N+VL D +E + + T LG LL G+NI ++ T
Sbjct: 35 GFDDYVNMVLKDVKEYEVTASGITETDLGDTLLNGNNIAMVRTT 78
>gi|386875165|ref|ZP_10117354.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807044|gb|EIJ66474.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 79
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
FD +MNL LD+AE++ K + LG+ILL+GDNI
Sbjct: 37 FDIHMNLTLDNAEDISEGKTEK--LGKILLRGDNI 69
>gi|154303271|ref|XP_001552043.1| predicted protein [Botryotinia fuckeliana B05.10]
gi|347841641|emb|CCD56213.1| similar to U6 snRNA-associated Sm-like protein LSm5 [Botryotinia
fuckeliana]
Length = 84
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
F +GFD+Y+N+VL+D E + ++ L +ILL G+ I +++ G+
Sbjct: 29 FTGTLTGFDDYVNMVLEDVIEFDHQSGSQTKLPKILLNGNGIAMLVPGGE 78
>gi|115395198|ref|XP_001213486.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193055|gb|EAU34755.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 83
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E T++ L +ILL G+N+ +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDY-SGTQEKLPKILLNGNNVCMLIPGGE 77
>gi|50308811|ref|XP_454410.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643545|emb|CAG99497.1| KLLA0E10209p [Kluyveromyces lactis]
Length = 84
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+V+++A E + ++ G++LL G+NI +++ GK
Sbjct: 37 GFDDYVNVVIENAVEYLEDQEIKRFQGKMLLTGNNIAMLIPGGK 80
>gi|346470761|gb|AEO35225.1| hypothetical protein [Amblyomma maculatum]
Length = 90
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 4 TKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITL 61
+K+ IM ++ L GFD+++N+VL+D E R+ L +ILL G+NIT+
Sbjct: 23 SKIHIIMKSDKEIVGTLL--GFDDFVNMVLEDVTEYESTPEGRRITKLDQILLNGNNITM 80
Query: 62 MMNTG 66
M+ G
Sbjct: 81 MVPGG 85
>gi|299471840|emb|CBN77010.1| Sm-like protein LSm5 [Ectocarpus siliculosus]
Length = 85
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK---PLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VLDD E + + K L +ILL G+N+ +++ G
Sbjct: 35 GFDDYVNMVLDDVTEYEVDADGTKRRIQLDQILLNGNNVAMLVPGGS 81
>gi|221118892|ref|XP_002154101.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Hydra
magnipapillata]
Length = 93
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 3 STKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNIT 60
+K+ IM ++ FL GFD+++N+VL+D E R+ L +ILL G+NIT
Sbjct: 25 GSKIHIIMKTDREIVGTFL--GFDDFVNVVLEDVTEFENTPEGRRITKLDQILLNGNNIT 82
Query: 61 LMMNTGK 67
+++ G+
Sbjct: 83 MLVPGGQ 89
>gi|325187598|emb|CCA22134.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 67
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTG 66
GFD+Y+N+VLDD E + + ++ L ++LL G+N+ +++ G
Sbjct: 13 GFDDYVNMVLDDVTEFELTPSGKRQIALDQVLLNGNNVCMLIPGG 57
>gi|198425042|ref|XP_002126895.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm5
[Ciona intestinalis]
Length = 89
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 3 STKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNIT 60
+K+ IM ++ L GFD+++N+VL+D E R+ L +ILL G+NIT
Sbjct: 21 GSKIHIIMKSEKEIVGTLL--GFDDFVNMVLEDVTEYESTSEGRRISKLDQILLNGNNIT 78
Query: 61 LMMNTGK 67
+++ G+
Sbjct: 79 MLVPGGE 85
>gi|383852431|ref|XP_003701731.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Megachile rotundata]
Length = 219
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 9/44 (20%)
Query: 25 FDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNI 59
FD++MNL+L D EE IK KNT++P LG +LL+G+NI
Sbjct: 36 FDKHMNLILGDCEEFRKIKPKNTKQPEREDKRVLGFVLLRGENI 79
>gi|427785997|gb|JAA58450.1| Putative u6 snrna-associated sm-like protein [Rhipicephalus
pulchellus]
Length = 90
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 4 TKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITL 61
+K+ IM ++ L GFD+++N+VL+D E R+ L +ILL G+NIT+
Sbjct: 23 SKIHIIMKSDKEIVGTLL--GFDDFVNMVLEDVTEYESTPEGRRITKLDQILLNGNNITM 80
Query: 62 MMNTG 66
M+ G
Sbjct: 81 MVPGG 85
>gi|109502984|ref|XP_001054331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Rattus
norvegicus]
gi|392333476|ref|XP_003752904.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Rattus
norvegicus]
Length = 90
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMM 63
GFD+++N+VL+D E I R+ L +ILL G+NIT+++
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLV 83
>gi|239787841|ref|NP_001155181.1| small ribonucleoprotein particle protein B [Apis mellifera]
Length = 217
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 9/44 (20%)
Query: 25 FDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNI 59
FD++MNL+L D EE IK KNT++P LG +LL+G+NI
Sbjct: 34 FDKHMNLILGDCEEFRKIKPKNTKQPEREDKRVLGFVLLRGENI 77
>gi|11498481|ref|NP_069709.1| small nuclear ribonucleoprotein [Archaeoglobus fulgidus DSM 4304]
gi|6094214|sp|O29386.1|RUXX_ARCFU RecName: Full=Putative snRNP Sm-like protein
gi|15826634|pdb|1I5L|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826635|pdb|1I5L|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826636|pdb|1I5L|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826637|pdb|1I5L|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826638|pdb|1I5L|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826639|pdb|1I5L|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826640|pdb|1I5L|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826641|pdb|1I5L|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826642|pdb|1I5L|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826643|pdb|1I5L|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826644|pdb|1I5L|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826645|pdb|1I5L|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826646|pdb|1I5L|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826647|pdb|1I5L|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826691|pdb|1I4K|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826692|pdb|1I4K|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826693|pdb|1I4K|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826694|pdb|1I4K|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826695|pdb|1I4K|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826696|pdb|1I4K|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826697|pdb|1I4K|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826698|pdb|1I4K|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826699|pdb|1I4K|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826700|pdb|1I4K|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826701|pdb|1I4K|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826702|pdb|1I4K|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826703|pdb|1I4K|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826704|pdb|1I4K|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826705|pdb|1I4K|O Chain O, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826706|pdb|1I4K|P Chain P, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826707|pdb|1I4K|Q Chain Q, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826708|pdb|1I4K|R Chain R, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826709|pdb|1I4K|S Chain S, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826710|pdb|1I4K|T Chain T, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826711|pdb|1I4K|U Chain U, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826712|pdb|1I4K|V Chain V, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826713|pdb|1I4K|W Chain W, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826714|pdb|1I4K|X Chain X, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826715|pdb|1I4K|Y Chain Y, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826716|pdb|1I4K|Z Chain Z, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826717|pdb|1I4K|1 Chain 1, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826718|pdb|1I4K|2 Chain 2, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|2649736|gb|AAB90374.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 77
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR G+D +MNLVL DAEE+ + RK +G ++++GD + +
Sbjct: 27 FRGTLDGYDIHMNLVLLDAEEIQNGEVVRK-VGSVVIRGDTVVFV 70
>gi|307188198|gb|EFN73030.1| Small nuclear ribonucleoprotein-associated protein B [Camponotus
floridanus]
Length = 209
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 9/45 (20%)
Query: 24 GFDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNI 59
FD++MNL+L D EE IK KNT++P LG +LL+G+NI
Sbjct: 25 AFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLLRGENI 69
>gi|145499845|ref|XP_001435907.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403043|emb|CAK68510.1| unnamed protein product [Paramecium tetraurelia]
Length = 138
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 8/50 (16%)
Query: 16 LIFRFLQSGFDEYMNLVLDDAEEVHIKKN------TRKPLGRILLKGDNI 59
L+ FL FD+++N++L + EE I+K T++ LG I+++GDNI
Sbjct: 25 LVGTFL--AFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVRGDNI 72
>gi|340712457|ref|XP_003394776.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus terrestris]
gi|340712459|ref|XP_003394777.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus terrestris]
gi|350399783|ref|XP_003485637.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus impatiens]
gi|350399786|ref|XP_003485638.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus impatiens]
Length = 217
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 9/44 (20%)
Query: 25 FDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNI 59
FD++MNL+L D EE IK KNT++P LG +LL+G+NI
Sbjct: 34 FDKHMNLILGDCEEFRKIKPKNTKQPEREDKRVLGFVLLRGENI 77
>gi|397641777|gb|EJK74845.1| hypothetical protein THAOC_03454 [Thalassiosira oceanica]
Length = 1567
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 10/53 (18%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTR----------KPLGRILLKGDNITLMMNTG 66
FD+++NLVL DAEE K++R + LG I+L+G+N+ M G
Sbjct: 1289 AFDKHLNLVLVDAEEFRTLKSSRAAILEERVEKRSLGLIILRGENVVSMAVEG 1341
>gi|403170432|ref|XP_003329769.2| small nuclear ribonucleoprotein G [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375168717|gb|EFP85350.2| small nuclear ribonucleoprotein G [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 78
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 29/37 (78%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
GFD ++NLVLD+A+E ++ ++ +G I+++G++++
Sbjct: 33 GFDIFLNLVLDEAQEESLEGGEKRKMGLIVIRGNSVS 69
>gi|442748493|gb|JAA66406.1| Putative u6 snrna-associated sm-like protein [Ixodes ricinus]
Length = 90
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 4 TKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITL 61
+K+ IM ++ L GFD+++N+VL+D E R+ L +ILL G+NIT+
Sbjct: 23 SKIHIIMKSDKEIVGTLL--GFDDFVNMVLEDVTEYESTPEGRRITKLDQILLNGNNITM 80
Query: 62 MMNTG 66
M+ G
Sbjct: 81 MVPGG 85
>gi|326472938|gb|EGD96947.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
gi|326477364|gb|EGE01374.1| small nuclear ribonucleoprotein [Trichophyton equinum CBS 127.97]
Length = 83
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E K L +ILL G+N+ +++ G+
Sbjct: 34 GFDDYVNMVLEDVTEFDYSGGQTK-LSKILLNGNNVCMLIPGGE 76
>gi|327304591|ref|XP_003236987.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326459985|gb|EGD85438.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 84
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E K L +ILL G+N+ +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGGQTK-LSKILLNGNNVCMLIPGGE 77
>gi|315045688|ref|XP_003172219.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
gi|311342605|gb|EFR01808.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
Length = 84
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E K L +ILL G+N+ +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGGQTK-LSKILLNGNNVCMLIPGGE 77
>gi|195042091|ref|XP_001991363.1| GH12097 [Drosophila grimshawi]
gi|193901121|gb|EDV99987.1| GH12097 [Drosophila grimshawi]
Length = 76
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 33 GFDPFMNVVLDDTIE-ECKDNTKNSIGMVVIRGNSIVMV 70
>gi|67468165|ref|XP_650141.1| small nuclear ribonucleo protein G [Entamoeba histolytica
HM-1:IMSS]
gi|56466712|gb|EAL44755.1| small nuclear ribonucleo protein G, putative [Entamoeba
histolytica HM-1:IMSS]
gi|407041678|gb|EKE40885.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449707868|gb|EMD47446.1| small nuclear ribonucleo protein G, putative [Entamoeba
histolytica KU27]
Length = 81
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 3/39 (7%)
Query: 23 SGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNI 59
SG+DEYMNLVLD+A + +T K P+G I+++G++I
Sbjct: 31 SGYDEYMNLVLDEAYDAS-NPDTDKHIPIGMIMIRGNSI 68
>gi|225433436|ref|XP_002285668.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Vitis vinifera]
gi|297741927|emb|CBI33362.3| unnamed protein product [Vitis vinifera]
Length = 87
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E I R+ L +ILL G+NI +++ G
Sbjct: 38 GFDVYVNMVLEDVTEYEITSEGRRITKLDQILLNGNNIAILVPGGS 83
>gi|322779204|gb|EFZ09540.1| hypothetical protein SINV_80286 [Solenopsis invicta]
Length = 344
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 9/44 (20%)
Query: 25 FDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNI 59
FD++MNL+L D EE IK KNT++P LG +LL+G+NI
Sbjct: 33 FDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLLRGENI 76
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 9/44 (20%)
Query: 25 FDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNI 59
FD++MNL+L D EE IK KNT++P LG +LL+G+NI
Sbjct: 162 FDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLLRGENI 205
>gi|356524941|ref|XP_003531086.1| PREDICTED: uncharacterized protein LOC100306359 [Glycine max]
gi|255628297|gb|ACU14493.1| unknown [Glycine max]
Length = 87
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E I R+ L +ILL G+NI +++ G
Sbjct: 38 GFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGS 83
>gi|145491875|ref|XP_001431936.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399043|emb|CAK64538.1| unnamed protein product [Paramecium tetraurelia]
Length = 126
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 8/50 (16%)
Query: 16 LIFRFLQSGFDEYMNLVLDDAEEVHIKKN------TRKPLGRILLKGDNI 59
L+ FL FD+++N++L + EE I+K T++ LG I+++GDNI
Sbjct: 25 LVGTFL--AFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVRGDNI 72
>gi|355571637|ref|ZP_09042865.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825270|gb|EHF09500.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 75
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
R + G+D +MNLVLD AEE I+ + +G ++++GDN+
Sbjct: 28 LRGVLQGYDVHMNLVLDKAEE--IEGGQSRSVGTLIVRGDNV 67
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+D ++N+VL+DAEE+ RK LG ++++GDN+ ++
Sbjct: 34 YDHHLNIVLEDAEELFPDGQARK-LGTVIIRGDNVIII 70
>gi|322704991|gb|EFY96580.1| small nuclear ribonucleoprotein (LSM5), putative [Metarhizium
anisopliae ARSEF 23]
Length = 100
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E T L +ILL G+NI +++ G+
Sbjct: 55 GFDDYVNMVLEDVTEFDY-SGTHTKLPKILLNGNNICMLIPGGE 97
>gi|322702469|gb|EFY94114.1| LSM domain-containing protein [Metarhizium anisopliae ARSEF 23]
Length = 190
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 20 FLQSGFDEYMNLVLDDAEEVHI-----KKNTRKPLG 50
+L GFDE+MNLV+DDA EV K TR+ LG
Sbjct: 63 WLSQGFDEFMNLVIDDAVEVSQVTKTNDKETRRQLG 98
>gi|388507376|gb|AFK41754.1| unknown [Lotus japonicus]
Length = 87
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E I R+ L +ILL G+NI +++ G
Sbjct: 38 GFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGS 83
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+D+++N+VLDD EE+ +TRK LG ++++GD + +
Sbjct: 34 YDQHLNIVLDDVEEIGEGGSTRK-LGTVVIRGDTVVFI 70
>gi|260786161|ref|XP_002588127.1| hypothetical protein BRAFLDRAFT_124953 [Branchiostoma floridae]
gi|229273285|gb|EEN44138.1| hypothetical protein BRAFLDRAFT_124953 [Branchiostoma floridae]
Length = 874
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MNLV+D E V ++ N R+ +G ++++G++I ++
Sbjct: 831 GFDPFMNLVID--ECVELRGNERQSIGMVVIRGNSIIML 867
>gi|449468622|ref|XP_004152020.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
gi|449522508|ref|XP_004168268.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
Length = 87
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E I R+ L +ILL G+NI +++ G
Sbjct: 38 GFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGS 83
>gi|156405713|ref|XP_001640876.1| predicted protein [Nematostella vectensis]
gi|156228012|gb|EDO48813.1| predicted protein [Nematostella vectensis]
Length = 77
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
G+D +MNLVLDDA E ++ N + +G ++++G++I M
Sbjct: 33 GYDPFMNLVLDDAVE-NVSGNEKHAIGMVVIRGNSIVTM 70
>gi|322696272|gb|EFY88067.1| putative U6 snRNA-associated protein [Metarhizium acridum CQMa
102]
Length = 81
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E T L +ILL G+NI +++ G+
Sbjct: 36 GFDDYVNMVLEDVTEFDY-SGTHTKLPKILLNGNNICMLIPGGE 78
>gi|18860007|ref|NP_573139.1| small ribonucleoprotein particle protein SmG, isoform A
[Drosophila melanogaster]
gi|221372123|ref|NP_001138209.1| small ribonucleoprotein particle protein SmG, isoform B
[Drosophila melanogaster]
gi|195351500|ref|XP_002042272.1| GM13382 [Drosophila sechellia]
gi|195567140|ref|XP_002107128.1| GD15738 [Drosophila simulans]
gi|29428065|sp|Q9VXE0.1|RUXG_DROME RecName: Full=Probable small nuclear ribonucleoprotein G;
Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G;
Short=SmG
gi|7293253|gb|AAF48634.1| small ribonucleoprotein particle protein SmG, isoform A
[Drosophila melanogaster]
gi|17944563|gb|AAL48169.1| RH35475p [Drosophila melanogaster]
gi|194124115|gb|EDW46158.1| GM13382 [Drosophila sechellia]
gi|194204529|gb|EDX18105.1| GD15738 [Drosophila simulans]
gi|220901796|gb|ACL82939.1| small ribonucleoprotein particle protein SmG, isoform B
[Drosophila melanogaster]
gi|220952224|gb|ACL88655.1| SmG-PA [synthetic construct]
Length = 76
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 33 GFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGNSIVMV 70
>gi|449283162|gb|EMC89854.1| U6 snRNA-associated Sm-like protein LSm5, partial [Columba livia]
Length = 82
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLM 62
GFD+++N+VL+D E I R+ L +ILL G+NIT++
Sbjct: 42 GFDDFVNMVLEDVTEFEIPPEGRRITKLDQILLNGNNITMV 82
>gi|403411591|emb|CCL98291.1| predicted protein [Fibroporia radiculosa]
Length = 600
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKP--LGRILLKGDNITLMM 63
GFD+++N+VL+D E I RK L + LL G+NI +++
Sbjct: 550 GFDDFVNMVLEDVTEYEITPQGRKATKLAQTLLNGNNICMLI 591
>gi|296805413|ref|XP_002843531.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238844833|gb|EEQ34495.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 84
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E K L +ILL G+N+ +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGGQTK-LSKILLNGNNVCMLIPGGE 77
>gi|452837763|gb|EME39705.1| hypothetical protein DOTSEDRAFT_75376 [Dothistroma septosporum
NZE10]
Length = 80
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 6 VQRIMTQPINLI------FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
+ R + PI +I F GFD+++N+VL+D E H + L +ILL G+N+
Sbjct: 11 IDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTE-HDYTGAKTKLPKILLNGNNV 69
Query: 60 TLMMNTG 66
+++ G
Sbjct: 70 CMLIPGG 76
>gi|328853199|gb|EGG02339.1| hypothetical protein MELLADRAFT_75479 [Melampsora larici-populina
98AG31]
Length = 78
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 30/37 (81%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
GFD ++NLVLD+A+E +++ ++ +G ++++G++++
Sbjct: 33 GFDIFLNLVLDEAQEENLEGGEKRKMGLVVIRGNSVS 69
>gi|224059779|ref|XP_002299989.1| predicted protein [Populus trichocarpa]
gi|224103927|ref|XP_002313247.1| predicted protein [Populus trichocarpa]
gi|118484238|gb|ABK93999.1| unknown [Populus trichocarpa]
gi|222847247|gb|EEE84794.1| predicted protein [Populus trichocarpa]
gi|222849655|gb|EEE87202.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E I R+ L +ILL G+NI +++ G
Sbjct: 39 GFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGS 84
>gi|297792081|ref|XP_002863925.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
gi|297309760|gb|EFH40184.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
Length = 88
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E I R+ L +ILL G+NI +++ G
Sbjct: 38 GFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGS 83
>gi|388498294|gb|AFK37213.1| unknown [Medicago truncatula]
Length = 87
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E I R+ L +ILL G+NI +++ G
Sbjct: 38 GFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGS 83
>gi|110739170|dbj|BAF01501.1| Sm-like protein [Arabidopsis thaliana]
Length = 88
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E I R+ L +ILL G+NI +++ G
Sbjct: 38 GFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGS 83
>gi|449017577|dbj|BAM80979.1| Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 105
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 24 GFDEYMNLVLDDAEEV--HIKKNTRK--PLGRILLKGDNITLMMNTG 66
GFDE+ NLVL D E K+ R+ LG ILLKG+N+ L+ + G
Sbjct: 44 GFDEHTNLVLVDTVEQWGSTAKHKRRTVALGTILLKGENVVLVRSLG 90
>gi|225559154|gb|EEH07437.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240282077|gb|EER45580.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325088218|gb|EGC41528.1| small nuclear ribonucleoprotein E [Ajellomyces capsulatus H88]
Length = 113
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 25/69 (36%)
Query: 7 QRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKKNT 45
++ + PI+ IF+ LQ GFDE+MNLV+DDA EV + T
Sbjct: 10 RKTLLAPIHFIFKLLQQRSVVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKT 69
Query: 46 ----RKPLG 50
R+ LG
Sbjct: 70 EDEKRRQLG 78
>gi|194891288|ref|XP_001977464.1| GG18240 [Drosophila erecta]
gi|195479283|ref|XP_002100833.1| GE15956 [Drosophila yakuba]
gi|190649113|gb|EDV46391.1| GG18240 [Drosophila erecta]
gi|194188357|gb|EDX01941.1| GE15956 [Drosophila yakuba]
Length = 76
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 33 GFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGNSIVMV 70
>gi|15239727|ref|NP_199698.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|9758886|dbj|BAB09440.1| U6 snRNA-associated Sm-like protein-like [Arabidopsis thaliana]
gi|16554971|gb|AAK61592.1| Sm-like protein [Arabidopsis thaliana]
gi|106879147|gb|ABF82603.1| At5g48870 [Arabidopsis thaliana]
gi|332008352|gb|AED95735.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|386305005|gb|AFJ05005.1| hypothetical protein [Arabidopsis thaliana]
Length = 88
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E I R+ L +ILL G+NI +++ G
Sbjct: 38 GFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGS 83
>gi|116779179|gb|ABK21171.1| unknown [Picea sitchensis]
gi|116779217|gb|ABK21184.1| unknown [Picea sitchensis]
gi|224285498|gb|ACN40469.1| unknown [Picea sitchensis]
Length = 85
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTG 66
GFD Y+N+VL+D E I R+ L +ILL G+NI +++ G
Sbjct: 38 GFDVYVNMVLEDVTEYEITSEGRRITKLDQILLNGNNIAILVPGG 82
>gi|324514246|gb|ADY45805.1| Small nuclear ribonucleoprotein G [Ascaris suum]
Length = 79
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+V++DA E H+K LG ++++G++I +M
Sbjct: 33 GFDPFMNIVVEDAVE-HLKNGESNTLGMVVIRGNSIVIM 70
>gi|321472276|gb|EFX83246.1| hypothetical protein DAPPUDRAFT_230679 [Daphnia pulex]
Length = 89
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E R+ L +ILL G+NIT+++ G+
Sbjct: 38 GFDDFVNMVLEDVSEFESTPEGRRVTKLDQILLNGNNITMLVPGGE 83
>gi|344228576|gb|EGV60462.1| hypothetical protein CANTEDRAFT_116517 [Candida tenuis ATCC
10573]
Length = 97
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 65
GFD+++N+VL+D E + NT P+ +LL G I ++ +T
Sbjct: 54 GFDDFVNVVLEDVTETDSEGNTDGPVKIMLLNGGQIAMISST 95
>gi|195447608|ref|XP_002071290.1| GK25208 [Drosophila willistoni]
gi|194167375|gb|EDW82276.1| GK25208 [Drosophila willistoni]
Length = 76
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 12 QPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+ +N I R GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 25 RAVNGILR----GFDPFMNVVLDDTIE-ECKDNTKNNIGMVVIRGNSIVMV 70
>gi|356512167|ref|XP_003524792.1| PREDICTED: uncharacterized protein LOC100527929 [Glycine max]
gi|255633598|gb|ACU17158.1| unknown [Glycine max]
Length = 87
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y N+VL+D E I R+ L +ILL G+NI +++ G
Sbjct: 38 GFDVYANMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGS 83
>gi|194763519|ref|XP_001963880.1| GF21254 [Drosophila ananassae]
gi|190618805|gb|EDV34329.1| GF21254 [Drosophila ananassae]
Length = 101
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 58 GFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGNSIVMV 95
>gi|432328294|ref|YP_007246438.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135003|gb|AGB04272.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 72
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD+YMN+VL D EE ++ TR+ LG ++L+G+N+ M
Sbjct: 32 GFDDYMNMVLMDTEE-KTEEMTRR-LGTVILRGNNVVRM 68
>gi|161527598|ref|YP_001581424.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407461586|ref|YP_006772903.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|160338899|gb|ABX11986.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407045208|gb|AFS79961.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 81
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 26 DEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
D YMNL++ DAEE+H K T GR++++G+N+
Sbjct: 40 DSYMNLIMTDAEELHEGK-TIANYGRVIVRGNNV 72
>gi|119614396|gb|EAW93990.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
Length = 85
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITL 61
GFD+++N+VL+D E I R+ L +ILL G+NIT+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITM 81
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 76
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 17 IFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+ R GFD++MNL+L+D+ E+ +++ LG I+++GDN+ ++
Sbjct: 27 VIRGNLHGFDQHMNLLLEDSVEI-LEEGKSNDLGTIVVRGDNVVII 71
>gi|58261590|ref|XP_568205.1| U6 snRNA binding protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115921|ref|XP_773347.1| hypothetical protein CNBI2880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255971|gb|EAL18700.1| hypothetical protein CNBI2880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230287|gb|AAW46688.1| U6 snRNA binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 131
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 65
G+D+ MNLV+DD E + + LG ++L+G NI L+ T
Sbjct: 53 GYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNIVLVSPT 94
>gi|443685344|gb|ELT88979.1| hypothetical protein CAPTEDRAFT_188465 [Capitella teleta]
Length = 85
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 3 STKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNIT 60
+K+ +M ++ L GFD+++N+VL+D E R+ L +ILL G+NIT
Sbjct: 17 GSKIHIVMKNDKEIVGTLL--GFDDFVNMVLEDVVEYETTAEGRRVTTLDQILLNGNNIT 74
Query: 61 LMMNTGK 67
+++ G+
Sbjct: 75 MLVPGGE 81
>gi|405119724|gb|AFR94496.1| U6 snRNA binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 131
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 65
G+D+ MNLV+DD E + + LG ++L+G NI L+ T
Sbjct: 53 GYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNIVLVSPT 94
>gi|169601618|ref|XP_001794231.1| hypothetical protein SNOG_03677 [Phaeosphaeria nodorum SN15]
gi|160705976|gb|EAT88882.2| hypothetical protein SNOG_03677 [Phaeosphaeria nodorum SN15]
Length = 86
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 66
GFD+Y+N+VL++ E+ + K L +ILL G+NI +M+ G
Sbjct: 36 GFDDYVNMVLEEVTEIDPAEGNVK-LPKILLNGNNICMMVPGG 77
>gi|449016467|dbj|BAM79869.1| Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 105
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 24 GFDEYMNLVLDDAEEV--HIKKNTRK--PLGRILLKGDNITLMMNTG 66
GFDE+ NLVL D E K+ R+ LG ILLKG+N+ L+ + G
Sbjct: 44 GFDEHTNLVLVDTVEQWGSTAKHKRRTVALGTILLKGENVVLVRSLG 90
>gi|301630685|ref|XP_002944447.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like, partial
[Xenopus (Silurana) tropicalis]
Length = 81
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITL 61
GFD+++N+VL+D E I R+ L +ILL G+NIT+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITM 81
>gi|384247810|gb|EIE21296.1| hypothetical protein COCSUDRAFT_83520 [Coccomyxa subellipsoidea
C-169]
Length = 270
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 12/55 (21%)
Query: 15 NLIFRFLQSGFDEYMNLVLDDAEE----------VHIKKNTRKPLGRILLKGDNI 59
+++ RF+ FD +MNLVL DAEE +++ R+ LG +LL+GD +
Sbjct: 26 HIVGRFM--AFDRHMNLVLGDAEEFRKLPPKKGRTEEERDQRRVLGLVLLRGDEV 78
>gi|302421256|ref|XP_003008458.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261351604|gb|EEY14032.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|346974640|gb|EGY18092.1| hypothetical protein VDAG_08426 [Verticillium dahliae VdLs.17]
Length = 80
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
F +GFD+Y+N+VL+D E K L +ILL G+NI +++ G+
Sbjct: 29 FSGTLTGFDDYVNMVLEDVTEFDYSGQHVK-LPKILLNGNNICMLIPGGE 77
>gi|259484847|tpe|CBF81418.1| TPA: small nuclear ribonucleoprotein (LSM5), putative
(AFU_orthologue; AFUA_7G04280) [Aspergillus nidulans
FGSC A4]
Length = 129
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E K L +ILL G+NI +++ G+
Sbjct: 81 GFDDYVNMVLEDVTEFDYTGAQVK-LPKILLNGNNICMLIPGGE 123
>gi|213403610|ref|XP_002172577.1| U6 snRNP-associated protein Lsm5 [Schizosaccharomyces japonicus
yFS275]
gi|212000624|gb|EEB06284.1| U6 snRNP-associated protein Lsm5 [Schizosaccharomyces japonicus
yFS275]
Length = 79
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL D E+ N + ILL G+ I +++ GK
Sbjct: 35 GFDDYVNMVLKDVTEIDTITNVTEQHKEILLNGNGICMLIPGGK 78
>gi|168009596|ref|XP_001757491.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691185|gb|EDQ77548.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 86
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTG 66
GFD Y+N+VL+D E I R+ L +ILL G+NI +++ G
Sbjct: 39 GFDVYVNMVLEDVTEYEITSEGRRITKLEQILLNGNNIAILVPGG 83
>gi|321250537|ref|XP_003191841.1| hypothetical protein CGB_B0090W [Cryptococcus gattii WM276]
gi|317458309|gb|ADV20054.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 122
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 1 MAST-----KVQRIMTQPINLI------FRFLQSGFDEYMNLVLDDAEEVHIKKN--TRK 47
MAST V R + PI ++ F GFD+Y+N+VL D +E + + T
Sbjct: 1 MASTILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITET 60
Query: 48 PLGRILLKGDNITL 61
LG LL G+NI +
Sbjct: 61 DLGDTLLNGNNIAM 74
>gi|156053688|ref|XP_001592770.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980]
gi|154703472|gb|EDO03211.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980 UF-70]
Length = 84
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
F +GFD+Y+N+VL+D E + + L +ILL G+ I +++ G+
Sbjct: 29 FTGTLTGFDDYVNMVLEDVIEFDHQSGNQTKLPKILLNGNGIAMLVPGGE 78
>gi|393795269|ref|ZP_10378633.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 81
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 26 DEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
D YMNL++ DAEE+H K T GR++++G+N+
Sbjct: 40 DSYMNLIMTDAEELHDGK-TIANYGRVIVRGNNV 72
>gi|321263450|ref|XP_003196443.1| U6 snRNA binding protein [Cryptococcus gattii WM276]
gi|317462919|gb|ADV24656.1| U6 snRNA binding protein, putative [Cryptococcus gattii WM276]
Length = 111
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 65
G+D+ MNLV+DD E + + LG ++L+G NI L+ T
Sbjct: 53 GYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNIVLVSPT 94
>gi|261190750|ref|XP_002621784.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239591207|gb|EEQ73788.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239614892|gb|EEQ91879.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
gi|327352333|gb|EGE81190.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ATCC
18188]
Length = 84
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 24 GFDEYMNLVLDDAEEV-HIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E + T+ P +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYTGAQTKLP--KILLNGNNICMLIPGGE 77
>gi|393228545|gb|EJD36188.1| U6 snRNA-associated Sm-like protein LSm7 [Auricularia delicata
TFB-10046 SS5]
Length = 116
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 24 GFDEYMNLVLDDAEEV--HIKKNTRKPLGRILLKGDNITLM 62
G+D+ +NLVLDD EEV + TRK LG +L+G +TL+
Sbjct: 60 GYDQLLNLVLDDVEEVIQEPEPRTRK-LGLAVLRGPTVTLL 99
>gi|323507716|emb|CBQ67587.1| probable U6 snRNA-associated Sm-like protein LSm5 [Sporisorium
reilianum SRZ2]
Length = 103
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK---PLGRILLKGDNITLMM 63
GFD+Y+N+VL+D E + +K LG+ LL G+NI +++
Sbjct: 52 GFDDYVNMVLEDVTEYETTPDGKKKKTKLGQTLLNGNNICMLI 94
>gi|407463901|ref|YP_006774783.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047089|gb|AFS81841.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 81
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 26 DEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
D YMNL++ DAEE+H K T GR++++G+N+
Sbjct: 40 DSYMNLIMTDAEELHDGK-TIANYGRVIVRGNNV 72
>gi|156555736|ref|XP_001602011.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Nasonia
vitripennis]
Length = 93
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTG 66
GFD+++N++LDD E R+ L +ILL G+NIT+++ G
Sbjct: 44 GFDDFVNMLLDDVTESEATPEGRRVTKLDQILLNGNNITMLVPGG 88
>gi|302837345|ref|XP_002950232.1| hypothetical protein VOLCADRAFT_109070 [Volvox carteri f.
nagariensis]
gi|300264705|gb|EFJ48900.1| hypothetical protein VOLCADRAFT_109070 [Volvox carteri f.
nagariensis]
Length = 95
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E+ +K L +ILL G+NI +++ GK
Sbjct: 46 GFDVYVNMVLEDVTEIEDSPEGKKLTKLDQILLNGNNIAILVPGGK 91
>gi|21358059|ref|NP_648022.1| CG6610, isoform A [Drosophila melanogaster]
gi|442630491|ref|NP_001261461.1| CG6610, isoform B [Drosophila melanogaster]
gi|442630493|ref|NP_001261462.1| CG6610, isoform C [Drosophila melanogaster]
gi|194867419|ref|XP_001972067.1| GG15317 [Drosophila erecta]
gi|195337817|ref|XP_002035522.1| GM14749 [Drosophila sechellia]
gi|195492179|ref|XP_002093879.1| GE21536 [Drosophila yakuba]
gi|195588132|ref|XP_002083812.1| GD13931 [Drosophila simulans]
gi|7295386|gb|AAF50703.1| CG6610, isoform A [Drosophila melanogaster]
gi|21064593|gb|AAM29526.1| RE60135p [Drosophila melanogaster]
gi|190653850|gb|EDV51093.1| GG15317 [Drosophila erecta]
gi|194128615|gb|EDW50658.1| GM14749 [Drosophila sechellia]
gi|194179980|gb|EDW93591.1| GE21536 [Drosophila yakuba]
gi|194195821|gb|EDX09397.1| GD13931 [Drosophila simulans]
gi|220950876|gb|ACL87981.1| CG6610-PA [synthetic construct]
gi|220959480|gb|ACL92283.1| CG6610-PA [synthetic construct]
gi|440215357|gb|AGB94156.1| CG6610, isoform B [Drosophila melanogaster]
gi|440215358|gb|AGB94157.1| CG6610, isoform C [Drosophila melanogaster]
Length = 91
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N++LDD E + R+ L +ILL G+NIT+++ G+
Sbjct: 43 GFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNITMLVPGGE 88
>gi|313586491|gb|ADR71256.1| U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
Length = 87
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E + R+ L +ILL G+NI +++ G
Sbjct: 38 GFDVYVNMVLEDVTEYEVTAEGRRITKLDQILLNGNNIAILVPGGS 83
>gi|195011763|ref|XP_001983306.1| GH15826 [Drosophila grimshawi]
gi|195125111|ref|XP_002007026.1| GI12608 [Drosophila mojavensis]
gi|195374668|ref|XP_002046125.1| GJ12731 [Drosophila virilis]
gi|193896788|gb|EDV95654.1| GH15826 [Drosophila grimshawi]
gi|193918635|gb|EDW17502.1| GI12608 [Drosophila mojavensis]
gi|194153283|gb|EDW68467.1| GJ12731 [Drosophila virilis]
Length = 91
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N++LDD E + R+ L +ILL G+NIT+++ G+
Sbjct: 43 GFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNITMLVPGGE 88
>gi|73670936|ref|YP_306951.1| small nuclear ribonucleoprotein [Methanosarcina barkeri str.
Fusaro]
gi|121724584|sp|Q465S1.1|RUXX_METBF RecName: Full=Putative snRNP Sm-like protein
gi|72398098|gb|AAZ72371.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 72
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR G+D +MNLVLD+AEE+ + K G ++++GDN+ +
Sbjct: 27 FRGELKGYDIHMNLVLDNAEELREGEVVSK-FGSVVIRGDNVVYV 70
>gi|125979619|ref|XP_001353842.1| GA19721 [Drosophila pseudoobscura pseudoobscura]
gi|194752281|ref|XP_001958451.1| GF23512 [Drosophila ananassae]
gi|195171277|ref|XP_002026433.1| GL15546 [Drosophila persimilis]
gi|54640826|gb|EAL29577.1| GA19721 [Drosophila pseudoobscura pseudoobscura]
gi|190625733|gb|EDV41257.1| GF23512 [Drosophila ananassae]
gi|194111339|gb|EDW33382.1| GL15546 [Drosophila persimilis]
Length = 91
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N++LDD E + R+ L +ILL G+NIT+++ G+
Sbjct: 43 GFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNITMLVPGGE 88
>gi|320032480|gb|EFW14433.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
Length = 84
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 24 GFDEYMNLVLDDAEEV-HIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E + T+ P +ILL G+N+ +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYTAAQTKLP--KILLNGNNVCMLIPGGE 77
>gi|71030572|ref|XP_764928.1| small nuclear ribonucleoprotein B [Theileria parva strain Muguga]
gi|68351884|gb|EAN32645.1| small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 155
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 25 FDEYMNLVLDDAEEVHI-------KKNTRKPLGRILLKGDNI 59
+D+YMNLVL D EE + + ++ LG +LL+G+NI
Sbjct: 33 YDKYMNLVLSDCEEFRMTLGKDKNRTEVKRTLGFVLLRGENI 74
>gi|317034233|ref|XP_001396223.2| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus niger CBS
513.88]
gi|358373053|dbj|GAA89653.1| small nuclear ribonucleoprotein [Aspergillus kawachii IFO 4308]
Length = 83
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E + K L +ILL G+N+ +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGSQVK-LPKILLNGNNVCMLIPGGE 77
>gi|386875950|ref|ZP_10118098.1| hypothetical protein BD31_I1425 [Candidatus Nitrosopumilus
salaria BD31]
gi|386806240|gb|EIJ65711.1| hypothetical protein BD31_I1425 [Candidatus Nitrosopumilus
salaria BD31]
Length = 46
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 26 DEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
D YMNL++ DAEE+H K T GR++++G+N+
Sbjct: 5 DSYMNLIMTDAEELHDGK-TIANYGRVIVRGNNV 37
>gi|340508793|gb|EGR34424.1| monoglyceride lipase, putative [Ichthyophthirius multifiliis]
Length = 322
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 25/75 (33%)
Query: 3 STKVQRIMTQPINLIFRFLQS-----------------------GFDEYMNLVLDDAEEV 39
S K + +T P+ IF FLQ GFDEYMN+V+D+A EV
Sbjct: 2 SKKFTKTITNPLTTIFGFLQKSVRVQIWLYENTDLKLEGKIVVIGFDEYMNMVIDEAIEV 61
Query: 40 HIKKNTRKPLGRILL 54
+ K+ +P I L
Sbjct: 62 Y--KSKVQPPKAICL 74
>gi|134080970|emb|CAK41484.1| unnamed protein product [Aspergillus niger]
Length = 59
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E + K L +ILL G+N+ +++ G+
Sbjct: 11 GFDDYVNMVLEDVTEFDYSGSQVK-LPKILLNGNNVCMLIPGGE 53
>gi|406861058|gb|EKD14114.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 59
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITL 61
GFD+Y+N+VL+D E N K L +ILL G+NI +
Sbjct: 13 GFDDYVNMVLEDVTEFDYSGNHTK-LSKILLNGNNICM 49
>gi|109077185|ref|XP_001093268.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5 [Macaca
mulatta]
gi|355747728|gb|EHH52225.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca fascicularis]
gi|355749905|gb|EHH54243.1| hypothetical protein EGM_15034 [Macaca fascicularis]
Length = 91
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL D E I R+ L +ILL G+N T+++ G+
Sbjct: 42 GFDDFVNMVLQDVTEFEITPEGRRITKLDQILLNGNNTTMLVPGGE 87
>gi|156088647|ref|XP_001611730.1| Sm domain containing protein [Babesia bovis]
gi|154798984|gb|EDO08162.1| Sm domain containing protein [Babesia bovis]
Length = 159
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 9/44 (20%)
Query: 25 FDEYMNLVLDDAEEVHIKKNT---------RKPLGRILLKGDNI 59
FD++MNLVL D EE I K ++ LG I+L+G+NI
Sbjct: 33 FDKHMNLVLADCEEFRITKGKGPDKQKVELKRTLGFIMLRGENI 76
>gi|195588134|ref|XP_002083813.1| GD13932 [Drosophila simulans]
gi|194195822|gb|EDX09398.1| GD13932 [Drosophila simulans]
Length = 55
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N++LDD E + R+ L +ILL G+NIT+++ G+
Sbjct: 7 GFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNITMLVPGGE 52
>gi|408993|gb|AAC60592.1| fusion protein [Homo sapiens]
gi|737057|prf||1921318A B-raf oncogene
Length = 104
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 5 KVQRIMTQPINLIFRFLQS 23
KVQ++M QPINLIFR+LQ+
Sbjct: 9 KVQKVMVQPINLIFRYLQN 27
>gi|367001532|ref|XP_003685501.1| hypothetical protein TPHA_0D04330 [Tetrapisispora phaffii CBS
4417]
gi|357523799|emb|CCE63067.1| hypothetical protein TPHA_0D04330 [Tetrapisispora phaffii CBS
4417]
Length = 86
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 24 GFDEYMNLVLDDAEEVHIKKN-----TRKPLGRILLKGDNITLMMNTGK 67
GFD+++N++++DA E + N K GR+LL G+NI +++ GK
Sbjct: 37 GFDDFVNVIIEDAVEYITRNNDDDDIVMKHHGRMLLSGNNIAMLVPGGK 85
>gi|196009502|ref|XP_002114616.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190582678|gb|EDV22750.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 76
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%), Gaps = 3/40 (7%)
Query: 24 GFDEYMNLVLDD-AEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+VLDD E+V K+N LG ++++G+++ +M
Sbjct: 33 GFDPFMNIVLDDTVEQVSSKENNH--LGMVVIRGNSVVMM 70
>gi|440632020|gb|ELR01939.1| hypothetical protein GMDG_05112 [Geomyces destructans 20631-21]
Length = 227
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 23 SGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITL 61
+GFD+Y+N+VL+D E T K + +ILL G+NI +
Sbjct: 165 TGFDDYVNMVLEDVTEFDYTGATTK-MEKILLNGNNICM 202
>gi|449018855|dbj|BAM82257.1| similar to Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 181
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 24 GFDEYMNLVLDDAEEV--HIKKNTRK--PLGRILLKGDNITLMMNTG 66
GFDE+ NLVL D E K+ R+ LG ILLKG+N+ L+ + G
Sbjct: 44 GFDEHTNLVLVDTVEQWGSTAKHKRRTVALGTILLKGENVVLVRSLG 90
>gi|295657072|ref|XP_002789110.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284564|gb|EEH40130.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 84
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 24 GFDEYMNLVLDDAEEV-HIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E + T+ P +ILL G+N+ +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYTGAQTKLP--KILLNGNNVCMLIPGGE 77
>gi|70987204|ref|XP_749081.1| small nuclear ribonucleoprotein (LSM5) [Aspergillus fumigatus
Af293]
gi|66846711|gb|EAL87043.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus Af293]
gi|159123148|gb|EDP48268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E K L +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGAQVK-LPKILLNGNNICMLIPGGE 77
>gi|392867674|gb|EAS29072.2| U6 snRNA-associated Sm-like protein LSm5 [Coccidioides immitis
RS]
Length = 84
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 24 GFDEYMNLVLDDAEEV-HIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E + T+ P +ILL G+N+ +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYTGAQTKLP--KILLNGNNVCMLIPGGE 77
>gi|302768987|ref|XP_002967913.1| hypothetical protein SELMODRAFT_227744 [Selaginella
moellendorffii]
gi|300164651|gb|EFJ31260.1| hypothetical protein SELMODRAFT_227744 [Selaginella
moellendorffii]
Length = 81
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD++MNLVLD+ E I N R +G ++++G+++ ++
Sbjct: 34 GFDQFMNLVLDNTME--ISGNERTEIGMVVIRGNSVAMI 70
>gi|357122008|ref|XP_003562708.1| PREDICTED: probable small nuclear ribonucleoprotein G-like
[Brachypodium distachyon]
Length = 80
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD++MNLV+D+ EV+ N R +G ++L+G+++ ++
Sbjct: 34 GFDQFMNLVVDNTVEVN--GNDRNDIGMVVLRGNSVVMI 70
>gi|302771065|ref|XP_002968951.1| hypothetical protein SELMODRAFT_90525 [Selaginella
moellendorffii]
gi|302816639|ref|XP_002989998.1| hypothetical protein SELMODRAFT_130618 [Selaginella
moellendorffii]
gi|300142309|gb|EFJ09011.1| hypothetical protein SELMODRAFT_130618 [Selaginella
moellendorffii]
gi|300163456|gb|EFJ30067.1| hypothetical protein SELMODRAFT_90525 [Selaginella
moellendorffii]
Length = 85
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTG 66
GFD Y+N+VL+D E I + ++ L +ILL G+NI +++ G
Sbjct: 38 GFDVYVNMVLEDVTEYEITPDGKRITKLDQILLNGNNIAILVPGG 82
>gi|195427721|ref|XP_002061925.1| GK17260 [Drosophila willistoni]
gi|194158010|gb|EDW72911.1| GK17260 [Drosophila willistoni]
Length = 91
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTG 66
GFD+++N++LDD E + R+ L +ILL G+NIT+++ G
Sbjct: 43 GFDDFVNMLLDDVTEYENTPDGRRVTKLDQILLNGNNITMLVPGG 87
>gi|432329499|ref|YP_007247642.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432136208|gb|AGB01135.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 75
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
R + G+D +MNLVLD AEEV + + +G ++++GDN+
Sbjct: 28 IRGVLQGYDVHMNLVLDKAEEV--ENGQVQKVGTLIVRGDNV 67
>gi|225711834|gb|ACO11763.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
gi|225714162|gb|ACO12927.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
gi|290562395|gb|ADD38594.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
Length = 79
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
G+D +MNLVL++ E K+ R P+G I+++G++I ++
Sbjct: 35 GYDPFMNLVLEEGIET-TKQGHRNPVGTIVIRGNSIVML 72
>gi|195374175|ref|XP_002046059.1| GM26694 [Drosophila sechellia]
gi|194123247|gb|EDW45290.1| GM26694 [Drosophila sechellia]
Length = 61
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N++LDD E + R+ L +ILL G+NIT+++ G+
Sbjct: 13 GFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNITMLVPGGE 58
>gi|443719153|gb|ELU09428.1| hypothetical protein CAPTEDRAFT_156804 [Capitella teleta]
Length = 76
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MNLV+D+A E K + +G ++++G++ITL+
Sbjct: 33 GFDPFMNLVVDEAIE-QCKTGEQNSIGMVVVRGNSITLL 70
>gi|260807635|ref|XP_002598614.1| hypothetical protein BRAFLDRAFT_118348 [Branchiostoma floridae]
gi|229283887|gb|EEN54626.1| hypothetical protein BRAFLDRAFT_118348 [Branchiostoma floridae]
Length = 87
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E R+ L +ILL G+NIT+++ G+
Sbjct: 38 GFDDFVNMVLEDVTEFENTSEGRRITKLDQILLNGNNITMLIPGGE 83
>gi|88604287|ref|YP_504465.1| like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gi|88189749|gb|ABD42746.1| Small nuclear ribonucleoprotein, LSM family [Methanospirillum
hungatei JF-1]
Length = 80
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 23 SGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
G+D +MNLVLD AEE I + + +G ++++GDN+
Sbjct: 38 QGYDVHMNLVLDKAEE--IVQGQAQSIGTLIIRGDNV 72
>gi|326428499|gb|EGD74069.1| hypothetical protein PTSG_12357 [Salpingoeca sp. ATCC 50818]
Length = 212
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 24 GFDEYMNLVLDDAEE---VHIKKNT-----RKPLGRILLKGDNITLMMNTG 66
+D++MN+VL D EE V KK T ++ LG ILL+G+N+ M G
Sbjct: 33 AYDKHMNMVLSDCEEFRTVKAKKGTDEQTQKRALGFILLRGENVVSMAVEG 83
>gi|305662480|ref|YP_003858768.1| Sm ribonucleoprotein-like protein [Ignisphaera aggregans DSM
17230]
gi|304377049|gb|ADM26888.1| Like-Sm ribonucleoprotein core [Ignisphaera aggregans DSM 17230]
Length = 78
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+D ++N+VLDDAEE + + + LG +L++G+N+ ++
Sbjct: 39 YDLHLNIVLDDAEE-ELSDGSWRKLGTVLIRGENVVVI 75
>gi|363748558|ref|XP_003644497.1| hypothetical protein Ecym_1454 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888129|gb|AET37680.1| hypothetical protein Ecym_1454 [Eremothecium cymbalariae
DBVPG#7215]
Length = 76
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 4/39 (10%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK-PLG-RILLKGDNIT 60
G+D ++N+VLDDA EVH KN RK PLG +++G++I
Sbjct: 31 GYDVFLNVVLDDALEVH--KNGRKFPLGDHTVIRGNSIV 67
>gi|366987137|ref|XP_003673335.1| hypothetical protein NCAS_0A03890 [Naumovozyma castellii CBS
4309]
gi|342299198|emb|CCC66947.1| hypothetical protein NCAS_0A03890 [Naumovozyma castellii CBS
4309]
Length = 90
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTR-------KPLGRILLKGDNITLMMNTGK 67
GFD+++N++++DA E I N + GR+LL G+NI +++ GK
Sbjct: 39 GFDDFVNVIIEDAVEWGIDPNDDFKEIIIMEHHGRMLLSGNNIAMLVPGGK 89
>gi|389610013|dbj|BAM18618.1| small nuclear ribonucleoprotein, core [Papilio xuthus]
Length = 95
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N++LDD E RK L +ILL G+NI +++ G+
Sbjct: 41 GFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVPGGE 86
>gi|308321244|gb|ADO27774.1| small nuclear ribonucleoprotein g [Ictalurus furcatus]
Length = 76
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MNLV+DD+ E+ + P+G ++++G++I ++
Sbjct: 33 GFDPFMNLVVDDSIEIS-AGGQQNPIGMVVIRGNSIIML 70
>gi|409043237|gb|EKM52720.1| hypothetical protein PHACADRAFT_261323 [Phanerochaete carnosa
HHB-10118-sp]
Length = 94
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%), Gaps = 4/42 (9%)
Query: 24 GFDEYMNLVLDDAEE-VHIK--KNTRKPLGRILLKGDNITLM 62
GFD+ +NLVLDD EE +H + +TR+ LG ++L+G +TL+
Sbjct: 36 GFDQLLNLVLDDVEEQLHTEPLPSTRQ-LGLVVLRGPTLTLL 76
>gi|124484977|ref|YP_001029593.1| hypothetical protein Mlab_0149 [Methanocorpusculum labreanum Z]
gi|124362518|gb|ABN06326.1| Like-Sm ribonucleoprotein, core [Methanocorpusculum labreanum Z]
Length = 75
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
R + G+D +MNLVLD AEE +N LG ++++GDN+
Sbjct: 28 IRGVLQGYDVHMNLVLDKAEEE--GENGTVSLGTLIVRGDNV 67
>gi|330507312|ref|YP_004383740.1| LSM domain-containing protein [Methanosaeta concilii GP6]
gi|328928120|gb|AEB67922.1| LSM domain protein [Methanosaeta concilii GP6]
Length = 78
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 17 IFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
+FR G+D +MNLV+D EEV R +G ++++GDN+
Sbjct: 32 VFRGELQGYDIHMNLVMDKTEEVAEGAVARN-IGTVIVRGDNVV 74
>gi|413949490|gb|AFW82139.1| SAD1 [Zea mays]
Length = 137
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 23 SGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E R+ L +ILL G+NI +++ G
Sbjct: 87 CGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAILVPGGS 133
>gi|378725612|gb|EHY52071.1| U6 snRNA-associated Sm-like protein LSm5 [Exophiala dermatitidis
NIH/UT8656]
Length = 84
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 24 GFDEYMNLVLDDAEEV-HIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E + T+ P +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEDVIEFDYTGAQTKLP--KILLNGNNICMLIPGGE 77
>gi|255080076|ref|XP_002503618.1| predicted protein [Micromonas sp. RCC299]
gi|226518885|gb|ACO64876.1| predicted protein [Micromonas sp. RCC299]
Length = 88
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKP--LGRILLKGDNITLMMNTG 66
GFD Y+N+VL+D E + R+ L +ILL G+NI L++ G
Sbjct: 38 GFDVYVNMVLEDVIEYEMTPEGRRETKLDQILLNGNNIALLVPGG 82
>gi|116780179|gb|ABK21578.1| unknown [Picea sitchensis]
gi|116780948|gb|ABK21894.1| unknown [Picea sitchensis]
Length = 80
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD++MNLVLD EV+ N R +G ++++G+++ ++
Sbjct: 34 GFDQFMNLVLDGTVEVN--GNERNEIGMVVIRGNSVVMI 70
>gi|345567853|gb|EGX50755.1| hypothetical protein AOL_s00054g841 [Arthrobotrys oligospora ATCC
24927]
Length = 81
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 66
GFD+Y+N+VL+D E + + L +ILL G+NI +++ G
Sbjct: 35 GFDDYVNMVLEDVTEYDAGEQIK--LKKILLNGNNICMLIPGG 75
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 30/39 (76%), Gaps = 4/39 (10%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTR-KPLGRILLKGDNITLM 62
+D ++NLVL++AEE+ + TR + LG I+++GDN+ L+
Sbjct: 34 YDYHLNLVLENAEEI---RGTRTRQLGTIIVRGDNVILV 69
>gi|412991139|emb|CCO15984.1| predicted protein [Bathycoccus prasinos]
Length = 97
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 24 GFDEYMNLVLDDAEEV----HIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD Y+N VL+DA E K T K L ILL G+NI +++ G+
Sbjct: 48 GFDVYVNCVLEDAIEYDRDQESGKETTKNLESILLNGNNICMIVPGGE 95
>gi|451848655|gb|EMD61960.1| hypothetical protein COCSADRAFT_147219 [Cochliobolus sativus
ND90Pr]
gi|451998469|gb|EMD90933.1| hypothetical protein COCHEDRAFT_1021722 [Cochliobolus
heterostrophus C5]
Length = 86
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 24 GFDEYMNLVLDDAEEVH-IKKNTRKPLGRILLKGDNITLMMNTG 66
GFD+Y+N+VL++ E+ + N + P +ILL G+NI +M+ G
Sbjct: 36 GFDDYVNMVLENVTEIDPAEGNVQLP--KILLNGNNICMMVPGG 77
>gi|115463665|ref|NP_001055432.1| Os05g0389300 [Oryza sativa Japonica Group]
gi|357133866|ref|XP_003568543.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Brachypodium distachyon]
gi|54287604|gb|AAV31348.1| putative snRNA associated protein [Oryza sativa Japonica Group]
gi|113578983|dbj|BAF17346.1| Os05g0389300 [Oryza sativa Japonica Group]
gi|215765216|dbj|BAG86913.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196723|gb|EEC79150.1| hypothetical protein OsI_19819 [Oryza sativa Indica Group]
gi|222622229|gb|EEE56361.1| hypothetical protein OsJ_05491 [Oryza sativa Japonica Group]
Length = 89
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 23 SGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E R+ L +ILL G+NI +++ G
Sbjct: 38 CGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAILVPGGS 84
>gi|312385157|gb|EFR29724.1| hypothetical protein AND_23652 [Anopheles darlingi]
Length = 64
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+VLD++ E K TR +G ++++G++I L+
Sbjct: 21 GFDPFMNVVLDESIE-ECKDGTRNNIGMVVIRGNSIILV 58
>gi|209879413|ref|XP_002141147.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556753|gb|EEA06798.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 13/56 (23%)
Query: 24 GFDEYMNLVLDDAEE-----VHIKKNTRKPLGR--------ILLKGDNITLMMNTG 66
GFDEY+N+VLD+ EE V + + K L R ILL G+NI L++ G
Sbjct: 50 GFDEYVNMVLDEVEEYGYTIVMNESASNKKLKRVLVNRLDTILLSGNNIALLIPGG 105
>gi|388852511|emb|CCF53913.1| probable U6 snRNA-associated Sm-like protein LSm5 [Ustilago
hordei]
Length = 103
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 24 GFDEYMNLVLDDAEEVHI---KKNTRKPLGRILLKGDNITLMM 63
GFD+Y+N+VL+D E K + LG+ LL G+NI +++
Sbjct: 52 GFDDYVNMVLEDVTEYETCLDGKKKKTELGQTLLNGNNICMLI 94
>gi|317139035|ref|XP_003189120.1| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus oryzae
RIB40]
Length = 102
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E K L +ILL G+N+ +++ G+
Sbjct: 54 GFDDYVNMVLEDVTEFDYSGAQIK-LPKILLNGNNVCMLIPGGE 96
>gi|226504910|ref|NP_001152573.1| SAD1 [Zea mays]
gi|226528898|ref|NP_001149693.1| SAD1 [Zea mays]
gi|242090409|ref|XP_002441037.1| hypothetical protein SORBIDRAFT_09g019200 [Sorghum bicolor]
gi|194697624|gb|ACF82896.1| unknown [Zea mays]
gi|195606068|gb|ACG24864.1| SAD1 [Zea mays]
gi|195609070|gb|ACG26365.1| SAD1 [Zea mays]
gi|195629524|gb|ACG36403.1| SAD1 [Zea mays]
gi|195638676|gb|ACG38806.1| SAD1 [Zea mays]
gi|195657645|gb|ACG48290.1| SAD1 [Zea mays]
gi|241946322|gb|EES19467.1| hypothetical protein SORBIDRAFT_09g019200 [Sorghum bicolor]
gi|413945216|gb|AFW77865.1| SAD1 isoform 1 [Zea mays]
gi|413945217|gb|AFW77866.1| SAD1 isoform 2 [Zea mays]
gi|413949491|gb|AFW82140.1| SAD1 [Zea mays]
Length = 88
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 23 SGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD Y+N+VL+D E R+ L +ILL G+NI +++ G
Sbjct: 38 CGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAILVPGGS 84
>gi|409049871|gb|EKM59348.1| hypothetical protein PHACADRAFT_169890 [Phanerochaete carnosa
HHB-10118-sp]
Length = 77
Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
G+D ++NLVLDDA E + P+G ++++G+++T M
Sbjct: 33 GYDLFLNLVLDDALE-ETTPAQKHPIGTVVIRGNSVTSM 70
>gi|428181287|gb|EKX50151.1| small nuclear ribonucleo protein polypeptide G [Guillardia theta
CCMP2712]
Length = 78
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
G+D++MNLVLD +EV + R +G ++++G++I+++
Sbjct: 33 GYDQFMNLVLDHTQEV-VTPTQRNEIGMVVVRGNSISMV 70
>gi|119482644|ref|XP_001261350.1| small nuclear ribonucleoprotein (LSM5), putative [Neosartorya
fischeri NRRL 181]
gi|119409505|gb|EAW19453.1| small nuclear ribonucleoprotein (LSM5), putative [Neosartorya
fischeri NRRL 181]
Length = 61
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E K L +ILL G+NI +++ G+
Sbjct: 13 GFDDYVNMVLEDVTEFDYSGAQVK-LPKILLNGNNICMLIPGGE 55
>gi|121711305|ref|XP_001273268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
gi|119401419|gb|EAW11842.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
Length = 83
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E K L +ILL G+N+ +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGAQIK-LNKILLNGNNVCMLIPGGE 77
>gi|118577120|ref|YP_876863.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118195641|gb|ABK78559.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 106
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 26 DEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
D YMNL++ DAEE H K GR++++G+N+
Sbjct: 65 DSYMNLIMTDAEEFHDSKVVAN-YGRVIVRGNNV 97
>gi|390601213|gb|EIN10607.1| like-Sm ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 77
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
G+D ++NLV+DDA E + PLG ++++G+++T M
Sbjct: 33 GYDLFLNLVIDDALE-ETTPAQKHPLGTVVIRGNSVTSM 70
>gi|340369286|ref|XP_003383179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Amphimedon queenslandica]
Length = 108
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E + R+ L ILL G+NI +++ G+
Sbjct: 63 GFDDFVNVVLEDVTEFEMTPEGRRITKLDEILLNGNNIAMLIPGGE 108
>gi|225710716|gb|ACO11204.1| Small nuclear ribonucleoprotein G [Caligus rogercresseyi]
Length = 79
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
G+D +MNLVL++ E K+ R P+G ++++G++I ++
Sbjct: 35 GYDPFMNLVLEEGIET-TKQGHRNPVGTVVIRGNSIVML 72
>gi|91078636|ref|XP_968589.1| PREDICTED: similar to Lsm5 protein [Tribolium castaneum]
gi|270004060|gb|EFA00508.1| hypothetical protein TcasGA2_TC003372 [Tribolium castaneum]
Length = 89
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N++L+D E R+ L +ILL G+NIT+++ G+
Sbjct: 41 GFDDFVNMLLEDVTEYETTPEGRRITKLDQILLNGNNITMLVPGGE 86
>gi|294887859|ref|XP_002772254.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
gi|239876324|gb|EER04070.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
Length = 87
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITL 61
G+D++MNLVLD+A E+ + + ++ +G ++++G++I +
Sbjct: 41 GYDQFMNLVLDNAVEL-VSRTEKREIGMVVIRGNSILM 77
>gi|21228485|ref|NP_634407.1| small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
gi|20906968|gb|AAM32079.1| Small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
Length = 74
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
+ +++Q M +NL+ L+S D+YMNL L D E+ +K + LG ++L+G+NI
Sbjct: 10 IVGSRIQVEMKGDLNLLEGTLKS-VDDYMNLHLVDTMEI-VKGEKVRSLGSVVLRGNNII 67
Query: 61 LM 62
L+
Sbjct: 68 LI 69
>gi|426195723|gb|EKV45652.1| hypothetical protein AGABI2DRAFT_72502 [Agaricus bisporus var.
bisporus H97]
Length = 78
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
G+D ++NLV+DDA E + P+G+++++G+++T M
Sbjct: 33 GYDLFLNLVIDDAIE-ETTPAQKHPIGQVVIRGNSVTSM 70
>gi|73671030|ref|YP_307045.1| small nuclear riboprotein-like protein [Methanosarcina barkeri
str. Fusaro]
gi|72398192|gb|AAZ72465.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 74
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
+ +++Q M +NL+ L+S D+YMNL L D E+ +K + LG ++L+G+NI
Sbjct: 10 IVGSRIQVEMKGDLNLLEGTLKS-VDDYMNLHLVDTMEI-VKGEKVRSLGSVVLRGNNII 67
Query: 61 LM 62
L+
Sbjct: 68 LI 69
>gi|254166807|ref|ZP_04873661.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|254167437|ref|ZP_04874289.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|289596330|ref|YP_003483026.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623700|gb|EDY36263.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|197624417|gb|EDY36978.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|289534117|gb|ADD08464.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 72
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
G+D+YMN+VL D EE ++ TR+ LG ++L+G+N+ M
Sbjct: 32 GYDDYMNMVLMDTEE-KTEEMTRR-LGTVILRGNNVVRM 68
>gi|169860675|ref|XP_001836972.1| hypothetical protein CC1G_00108 [Coprinopsis cinerea
okayama7#130]
gi|116501694|gb|EAU84589.1| hypothetical protein CC1G_00108 [Coprinopsis cinerea
okayama7#130]
Length = 78
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
G+D ++NLV+DDA E + P+G ++++G+++T M
Sbjct: 33 GYDLFLNLVIDDAVE-ETTPGQKHPIGTVVIRGNSVTSM 70
>gi|428180050|gb|EKX48919.1| hypothetical protein GUITHDRAFT_93594 [Guillardia theta CCMP2712]
Length = 94
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNT---RKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E + + L +ILL G+NI +++ G+
Sbjct: 39 GFDDYVNMVLEDVTEFEVNPDGGYRETKLDQILLNGNNICMLVPGGE 85
>gi|238482069|ref|XP_002372273.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
gi|220700323|gb|EED56661.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
Length = 83
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL+D E K L +ILL G+N+ +++ G+
Sbjct: 35 GFDDYVNMVLEDVTEFDYSGAQIK-LPKILLNGNNVCMLIPGGE 77
>gi|401625995|gb|EJS43964.1| lsm5p [Saccharomyces arboricola H-6]
Length = 93
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 7/51 (13%)
Query: 24 GFDEYMNLVLDDAEEVHI--KKNTR-----KPLGRILLKGDNITLMMNTGK 67
GFD+++N++L+DA E I + TR + GR+LL G+NI +++ GK
Sbjct: 36 GFDDFVNVILEDAVEWLIDPEDETRNEKVMQHHGRMLLSGNNIAILVPGGK 86
>gi|170040621|ref|XP_001848091.1| small nuclear ribonucleoprotein-associated protein B [Culex
quinquefasciatus]
gi|167864230|gb|EDS27613.1| small nuclear ribonucleoprotein-associated protein B [Culex
quinquefasciatus]
Length = 196
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 9/45 (20%)
Query: 25 FDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNIT 60
FD++MNL+L D EE IK KNT+ P LG +LL+G NI
Sbjct: 26 FDKHMNLILGDCEEFRKIKPKNTKLPEREEKRVLGFVLLRGGNIV 70
>gi|402220188|gb|EJU00260.1| U6 snRNA-associated Sm-like protein LSm7 [Dacryopinax sp. DJM-731
SS1]
Length = 120
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 24 GFDEYMNLVLDD-AEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD+ MNLVLDD E + + ++ LG ++L+G ITL+
Sbjct: 63 GFDQLMNLVLDDVVENLSSEPPKQRNLGLVVLRGPTITLL 102
>gi|157128615|ref|XP_001655156.1| small nuclear ribonucleoprotein-associated protein [Aedes
aegypti]
gi|94469378|gb|ABF18538.1| U1 snRNP component [Aedes aegypti]
gi|108882220|gb|EAT46445.1| AAEL002377-PA [Aedes aegypti]
Length = 205
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 9/45 (20%)
Query: 25 FDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNIT 60
FD++MNL+L D EE IK KNT+ P LG +LL+G NI
Sbjct: 34 FDKHMNLILGDCEEFRKIKPKNTKLPEREEKRVLGFVLLRGGNIV 78
>gi|156843124|ref|XP_001644631.1| hypothetical protein Kpol_526p26 [Vanderwaltozyma polyspora DSM
70294]
gi|156115278|gb|EDO16773.1| hypothetical protein Kpol_526p26 [Vanderwaltozyma polyspora DSM
70294]
Length = 86
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 17/76 (22%)
Query: 6 VQRIMTQPINLIFRFLQS---------GFDEYMNLVLDDAEEV----HIKKNTR-KPLGR 51
+ + + QP+ +I LQS GFD+++N++++DA E H + +T + GR
Sbjct: 13 IDKTINQPVWII---LQSNREFTGKLVGFDDFVNVIIEDAVEYITDNHNQCDTELRHHGR 69
Query: 52 ILLKGDNITLMMNTGK 67
+LL G+NI +++ G+
Sbjct: 70 MLLSGNNIAMLVPGGR 85
>gi|126178181|ref|YP_001046146.1| like-Sm ribonucleoprotein, core [Methanoculleus marisnigri JR1]
gi|125860975|gb|ABN56164.1| Small nuclear ribonucleoprotein, LSM family [Methanoculleus
marisnigri JR1]
Length = 75
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
R + G+D +MNLVLD AEE + +K LG ++++GDN+
Sbjct: 28 IRGILQGYDVHMNLVLDKAEE-EVDGAAQK-LGTLIVRGDNV 67
>gi|401413338|ref|XP_003886116.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
gi|325120536|emb|CBZ56090.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
Length = 118
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTG 66
GFD+++N+VLDD E K L ILL G+NIT+++ G
Sbjct: 53 GFDDFVNMVLDDVTEYTFTPTGVKKTKLQSILLNGNNITMLVPGG 97
>gi|158294309|ref|XP_315523.4| AGAP005523-PA [Anopheles gambiae str. PEST]
gi|157015505|gb|EAA11463.4| AGAP005523-PA [Anopheles gambiae str. PEST]
Length = 202
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 9/45 (20%)
Query: 25 FDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNIT 60
FD++MNL+L D EE IK KNT+ P LG +LL+G NI
Sbjct: 34 FDKHMNLILGDCEEFRKIKPKNTKLPEREEKRVLGFVLLRGGNIV 78
>gi|296423698|ref|XP_002841390.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637628|emb|CAZ85581.1| unnamed protein product [Tuber melanosporum]
Length = 84
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 66
GFD+Y+N+VL+D E K L +ILL G+NI +++ G
Sbjct: 35 GFDDYVNMVLEDVTEYESTGEQVK-LKKILLNGNNICMLIPGG 76
>gi|66363282|ref|XP_628607.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
gi|90109709|pdb|2FWK|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|90109710|pdb|2FWK|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|321159967|pdb|3PGG|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|321159968|pdb|3PGG|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|46229827|gb|EAK90645.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
Length = 121
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 14/63 (22%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTR------KPLGR--------ILLKGDNITLMM 63
F + GFDEY+N+VLDD +E K + K L R ILL G+N+ +++
Sbjct: 51 FSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAMLV 110
Query: 64 NTG 66
G
Sbjct: 111 PGG 113
>gi|332026604|gb|EGI66713.1| U6 snRNA-associated Sm-like protein LSm5 [Acromyrmex echinatior]
Length = 91
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N++L+D E R+ L +ILL G NIT+++ G+
Sbjct: 42 GFDDFVNMLLEDVTESEATPEGRRVTKLDQILLNGSNITMLVPGGE 87
>gi|307178103|gb|EFN66930.1| U6 snRNA-associated Sm-like protein LSm5 [Camponotus floridanus]
Length = 91
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N++L+D E R+ L +ILL G NIT+++ G+
Sbjct: 42 GFDDFVNMLLEDVTESEATPEGRRVTKLDQILLNGSNITMLVPGGE 87
>gi|389751535|gb|EIM92608.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 85
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMM 63
GFD+++N+VL+D E I RK L + LL G+NI +++
Sbjct: 35 GFDDFVNMVLEDVTEFEITSAGRKKTALRQTLLNGNNICMLV 76
>gi|149621318|ref|XP_001518812.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ornithorhynchus anatinus]
Length = 155
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
Query: 25 FDEYMNLVLDDAEEVHIKKN--------TRKPLGRILLKGDNI 59
FD +MNLVL D EE + N ++ LG ILL+G+NI
Sbjct: 33 FDRHMNLVLADCEEFRLTLNKGLKEPIEVKRTLGFILLRGENI 75
>gi|50546793|ref|XP_500866.1| YALI0B14058p [Yarrowia lipolytica]
gi|49646732|emb|CAG83117.1| YALI0B14058p [Yarrowia lipolytica CLIB122]
Length = 85
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 66
GFD+++N+VL+D EV+ K ++LL G +I +++ G
Sbjct: 42 GFDDFVNMVLEDVTEVNTKTGKETNHSKLLLSGKSIYMLVPGG 84
>gi|307197393|gb|EFN78665.1| U6 snRNA-associated Sm-like protein LSm5 [Harpegnathos saltator]
Length = 91
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N++L+D E R+ L +ILL G NIT+++ G+
Sbjct: 42 GFDDFVNMLLEDVTESEATPEGRRVTKLDQILLNGSNITMLVPGGE 87
>gi|110760718|ref|XP_001120607.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Apis
mellifera]
gi|340715932|ref|XP_003396461.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Bombus
terrestris]
gi|350396810|ref|XP_003484674.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Bombus
impatiens]
gi|380019757|ref|XP_003693769.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Apis
florea]
gi|383866113|ref|XP_003708516.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Megachile rotundata]
Length = 91
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N++L+D E R+ L +ILL G NIT+++ G+
Sbjct: 42 GFDDFVNMLLEDVTESEATPEGRRVTKLDQILLNGSNITMLVPGGE 87
>gi|320592276|gb|EFX04715.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 80
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 67
GFD+Y+N+VL++ E K + +ILL G+NI +++ G+
Sbjct: 35 GFDDYVNMVLEEVTEFDYSGGQTK-MSKILLNGNNICMLIPGGE 77
>gi|225711126|gb|ACO11409.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E ++ L +ILL G+NIT+++ G+
Sbjct: 43 GFDDFVNMVLEDVTEFESTSEGQRVSKLDQILLNGNNITMLVPGGE 88
>gi|225710006|gb|ACO10849.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E ++ L +ILL G+NIT+++ G+
Sbjct: 43 GFDDFVNMVLEDVTEFESTSEGQRVSKLDQILLNGNNITMLVPGGE 88
>gi|67601363|ref|XP_666392.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis
TU502]
gi|54657379|gb|EAL36161.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis]
Length = 115
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 14/63 (22%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTR------KPLGR--------ILLKGDNITLMM 63
F + GFDEY+N+VLDD +E K + K L R ILL G+N+ +++
Sbjct: 45 FSGVLRGFDEYVNMVLDDVQEYGFKADEEDMSGGNKKLKRVMVNRLETILLSGNNVAMLV 104
Query: 64 NTG 66
G
Sbjct: 105 PGG 107
>gi|367010514|ref|XP_003679758.1| hypothetical protein TDEL_0B04180 [Torulaspora delbrueckii]
gi|359747416|emb|CCE90547.1| hypothetical protein TDEL_0B04180 [Torulaspora delbrueckii]
Length = 85
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 17/76 (22%)
Query: 6 VQRIMTQPINLIFRFLQS---------GFDEYMNLVLDDA-EEVHIKKNTRKPL----GR 51
+ + ++QP+ ++ LQS GFD+++N++++DA E V+ K + + GR
Sbjct: 12 IDKTISQPVWIV---LQSNREFTGTLVGFDDFVNVIIEDAVEWVYNSKFEDEKILEHHGR 68
Query: 52 ILLKGDNITLMMNTGK 67
+LL G+NI +++ G+
Sbjct: 69 MLLSGNNIAMLVPGGR 84
>gi|70937084|ref|XP_739397.1| ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|56516366|emb|CAH81154.1| ribonucleoprotein, putative [Plasmodium chabaudi chabaudi]
Length = 141
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 7/42 (16%)
Query: 25 FDEYMNLVLDDAEE---VHIKKNTRKPLGR----ILLKGDNI 59
+D +MN+VL DAEE V K+N K + R IL++GDNI
Sbjct: 32 YDRHMNIVLVDAEEFRRVKCKENNSKEIKRVVGLILIRGDNI 73
>gi|344302358|gb|EGW32663.1| hypothetical protein SPAPADRAFT_61726 [Spathaspora passalidarum
NRRL Y-27907]
Length = 84
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITL 61
KV+ +MT + + GFD+Y+N+VL+D E+ + P+ ++LL G ++ +
Sbjct: 20 VGNKVKVLMTSDKEFYGKLI--GFDDYVNMVLEDVVEIDNEGTKSDPVKKMLLNGGHVAM 77
Query: 62 MM 63
++
Sbjct: 78 II 79
>gi|193582383|ref|XP_001951255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Acyrthosiphon pisum]
Length = 91
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N++L+D E R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMLLEDVTEYESTPEGRRVTKLDQILLNGNNITMLVPGGE 87
>gi|242023983|ref|XP_002432410.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517833|gb|EEB19672.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 91
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N++L+D E R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLVPGGE 87
>gi|145353525|ref|XP_001421061.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581297|gb|ABO99354.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 72
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD+++N+VLDDA + T P+G I+++G+++ M
Sbjct: 21 GFDQFLNVVLDDATNDTTSEKT--PMGMIVVRGNSVVSM 57
>gi|388579402|gb|EIM19726.1| LSM-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 87
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 24 GFDEYMNLVLDDAEEVHIKKN---TRKPLGRILLKGDNITLMMNTGK 67
GFD+++N+VLDD E I + + L + LL G+N+ +++ G+
Sbjct: 35 GFDDFVNMVLDDVTEYDISPDGTQKKSKLRQTLLNGNNVCMLLPGGE 81
>gi|126460744|ref|YP_001057022.1| LSM family small nuclear ribonucleoprotein [Pyrobaculum
calidifontis JCM 11548]
gi|126250465|gb|ABO09556.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
calidifontis JCM 11548]
Length = 80
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 19 RFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
R + FD+++NL+LDDAEE+ I N K G I+++G+N+
Sbjct: 35 RGILKAFDQHVNLLLDDAEEI-IDGNVYKR-GTIVVRGENV 73
>gi|303276468|ref|XP_003057528.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461880|gb|EEH59173.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 71
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD+++NLVLD E V + ++PLG ++++G++I+ +
Sbjct: 21 GFDQFLNLVLD--ECVDDSTSDKEPLGMVVVRGNSISAL 57
>gi|303276466|ref|XP_003057527.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461879|gb|EEH59172.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 77
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD+++NLVLD E V + ++PLG ++++G++I+ +
Sbjct: 27 GFDQFLNLVLD--ECVDDSTSDKEPLGMVVVRGNSISAL 63
>gi|157119614|ref|XP_001659450.1| Sm protein G, putative [Aedes aegypti]
gi|108875262|gb|EAT39487.1| AAEL008719-PA [Aedes aegypti]
Length = 76
Score = 34.7 bits (78), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+VLD++ E K +TR +G ++++G++I ++
Sbjct: 33 GFDPFMNVVLDESIE-ECKDSTRNNIGMVVIRGNSIIMV 70
>gi|256073118|ref|XP_002572879.1| hypothetical protein [Schistosoma mansoni]
gi|360045255|emb|CCD82803.1| hypothetical protein Smp_129760 [Schistosoma mansoni]
Length = 87
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 3 STKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNIT 60
+K+ IM ++ L GFD Y+N+VL D E ++ L ILL G NI
Sbjct: 19 GSKIHIIMKNDKEMVGTLL--GFDSYVNMVLADVTEFEFTAQGKRITKLPHILLNGSNIV 76
Query: 61 LMMNTGK 67
+M+ G+
Sbjct: 77 MMVPGGE 83
>gi|195144580|ref|XP_002013274.1| GL24044 [Drosophila persimilis]
gi|198452776|ref|XP_002137534.1| GA26490 [Drosophila pseudoobscura pseudoobscura]
gi|194102217|gb|EDW24260.1| GL24044 [Drosophila persimilis]
gi|198132072|gb|EDY68092.1| GA26490 [Drosophila pseudoobscura pseudoobscura]
Length = 76
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+VLDD E K T+ +G ++++G++I L+
Sbjct: 33 GFDPFMNVVLDDTIE-ECKDKTKNNVGMVVIRGNSIVLV 70
>gi|50290221|ref|XP_447542.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526852|emb|CAG60479.1| unnamed protein product [Candida glabrata]
Length = 90
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPL---------GRILLKGDNITLMMNTGK 67
GFDE++N++L+D E + L GR+LL G+NIT+++ GK
Sbjct: 36 GFDEFVNVILEDPIEYTTEITANDGLKSEVVMEHHGRMLLSGNNITMLVPGGK 88
>gi|14324575|dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 87
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+ + G+D YMN+VL +A E+ I + RIL++GDN+ +
Sbjct: 36 YSGILEGYDVYMNVVLQNASEI-INGENKGVFDRILVRGDNVIFV 79
>gi|290561451|gb|ADD38126.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus
salmonis]
Length = 95
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E R+ L +ILL G++IT+++ G+
Sbjct: 43 GFDDFVNMVLEDVTEYESTPEGRRVSKLDQILLNGNHITMLVPGGE 88
>gi|290561032|gb|ADD37918.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus
salmonis]
Length = 95
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E R+ L +ILL G++IT+++ G+
Sbjct: 43 GFDDFVNMVLEDVTEYESTPEGRRVSKLDQILLNGNHITMLVPGGE 88
>gi|299740998|ref|XP_001834148.2| hypothetical protein CC1G_09105 [Coprinopsis cinerea
okayama7#130]
gi|298404507|gb|EAU87644.2| hypothetical protein CC1G_09105 [Coprinopsis cinerea
okayama7#130]
Length = 107
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNT--RKPLGRILLKGDNITLM 62
G+D+ +NLVLD+ EE N ++ LG ++L+G ITL+
Sbjct: 50 GYDQLLNLVLDEVEEEVSASNPYKKRSLGLVVLRGPTITLL 90
>gi|13541187|ref|NP_110875.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
gi|20178114|sp|Q97BU5.2|RUXX_THEVO RecName: Full=Putative snRNP Sm-like protein
Length = 83
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+ + G+D YMN+VL +A E+ I + RIL++GDN+ +
Sbjct: 32 YSGILEGYDVYMNVVLQNASEI-INGENKGVFDRILVRGDNVIFV 75
>gi|440797084|gb|ELR18179.1| small nuclear ribonucleoprotein G, putative [Acanthamoeba
castellanii str. Neff]
Length = 76
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD++MNLVL+D E + + LG ++++G+++ L+
Sbjct: 33 GFDQFMNLVLEDTVE-EVSSTEKNELGMVVIRGNSVILI 70
>gi|119872589|ref|YP_930596.1| like-Sm ribonucleoprotein, core [Pyrobaculum islandicum DSM 4184]
gi|119673997|gb|ABL88253.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
islandicum DSM 4184]
Length = 80
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 19 RFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
R + FD+++NL+LDDAEE+ I N K G I+++G+N+ +
Sbjct: 35 RGILRSFDQHVNLLLDDAEEI-IDGNVYKR-GTIVIRGENVLFI 76
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.138 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 924,625,881
Number of Sequences: 23463169
Number of extensions: 28974530
Number of successful extensions: 67889
Number of sequences better than 100.0: 798
Number of HSP's better than 100.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 484
Number of HSP's that attempted gapping in prelim test: 67009
Number of HSP's gapped (non-prelim): 804
length of query: 67
length of database: 8,064,228,071
effective HSP length: 39
effective length of query: 28
effective length of database: 7,149,164,480
effective search space: 200176605440
effective search space used: 200176605440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)