BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035338
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZUG0|RUXE_DANRE Small nuclear ribonucleoprotein E OS=Danio rerio GN=snrpe PE=3
SV=1
Length = 92
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 54/79 (68%), Gaps = 21/79 (26%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 44 NTRKPLGRILLKGDNITLM 62
RKPLGRI+LKGDNITL+
Sbjct: 69 KNRKPLGRIMLKGDNITLL 87
>sp|A1XQR9|RUXE_PIG Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3
SV=1
Length = 92
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 21/85 (24%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
+ KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H
Sbjct: 7 AQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 42 KKNTRKPLGRILLKGDNITLMMNTG 66
K +RK LGRI+LKGDNITL+ +
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>sp|P62305|RUXE_MOUSE Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=2
SV=1
Length = 92
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>sp|P62304|RUXE_HUMAN Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1
SV=1
Length = 92
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>sp|P62303|RUXE_CHICK Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3
SV=1
Length = 92
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>sp|A4FUI2|RUXE_BOVIN Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3
SV=1
Length = 92
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 21/82 (25%)
Query: 5 KVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHIKK 43
KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 44 NTRKPLGRILLKGDNITLMMNT 65
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSV 90
>sp|Q9VLV5|RUXE_DROME Probable small nuclear ribonucleoprotein E OS=Drosophila
melanogaster GN=SmE PE=3 SV=1
Length = 94
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 55/86 (63%), Gaps = 21/86 (24%)
Query: 2 ASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
+ KVQ++M QPINLIFR+LQ+ GFDEYMNLVLDDAEEV+
Sbjct: 5 GNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVY 64
Query: 41 IKKNTRKPLGRILLKGDNITLMMNTG 66
+K R+ LGRI+LKGDNITL+ N
Sbjct: 65 VKTRQRRNLGRIMLKGDNITLIQNVS 90
>sp|A8XDT0|RUXE_CAEBR Probable small nuclear ribonucleoprotein E OS=Caenorhabditis
briggsae GN=snr-6 PE=3 SV=1
Length = 90
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 21/83 (25%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M+ K+Q++M QP+NLIFR+LQ+ GFDE+MN+V D+AEEV
Sbjct: 1 MSQRKIQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
++K R +GRILLKGDNITL+
Sbjct: 61 NMKTKGRNKIGRILLKGDNITLI 83
>sp|Q9XTU6|RUXE_CAEEL Probable small nuclear ribonucleoprotein E OS=Caenorhabditis
elegans GN=snr-6 PE=3 SV=1
Length = 90
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 21/83 (25%)
Query: 1 MASTKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEV 39
M++ K+ ++M QP+NLIFR+LQ+ GFDE+MN+V D+AEEV
Sbjct: 1 MSTRKLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 40 HIKKNTRKPLGRILLKGDNITLM 62
++K R +GRILLKGDNITL+
Sbjct: 61 NMKTKGRNKIGRILLKGDNITLI 83
>sp|Q9USZ3|RUXE_SCHPO Small nuclear ribonucleoprotein E OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sme1 PE=1 SV=1
Length = 84
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 22/81 (27%)
Query: 3 STKVQRIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVHI 41
S +VQ++M PIN IF+ LQ GFDE+MN+VLDDA +V
Sbjct: 2 SGRVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDA 61
Query: 42 KKNTRKPLGRILLKGDNITLM 62
K N R+ LGRILLKGDNITL+
Sbjct: 62 KNNKRE-LGRILLKGDNITLI 81
>sp|Q12330|RUXE_YEAST Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SME1 PE=1 SV=1
Length = 94
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 29/92 (31%)
Query: 3 STKVQ-RIMTQPINLIFRFLQS---------------------GFDEYMNLVLDDAEEVH 40
S KV+ + M PIN IF FLQ GFDE+MN+V+D+A E+
Sbjct: 2 SNKVKTKAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIP 61
Query: 41 I-----KKNTRK--PLGRILLKGDNITLMMNT 65
+ K++ K PLG+ILLKGDNITL+ +
Sbjct: 62 VNSADGKEDVEKGTPLGKILLKGDNITLITSA 93
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR + FD +MNLVL+DAEE+ + TR+ LG +L++GDNI +
Sbjct: 36 FRGVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYI 79
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR + G+D +MNLVLD+AEE+ + RK +G ++++GDN+
Sbjct: 27 FRGVLQGYDVHMNLVLDEAEELKDGEIVRK-IGGVVIRGDNVV 68
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
FR G+D +MNLVLD+AEE+ + +RK LG I+++GD +
Sbjct: 27 FRGELQGYDMHMNLVLDNAEELKENEASRK-LGTIIVRGDTVV 68
>sp|Q5R628|LSM5_PONAB U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5
PE=3 SV=3
Length = 91
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 87
>sp|P62322|LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5
PE=3 SV=2
Length = 91
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 87
>sp|Q9Y4Y9|LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5
PE=1 SV=3
Length = 91
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 87
>sp|Q2HJH0|LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5
PE=3 SV=3
Length = 91
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 67
GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 42 GFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 87
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR G+D +MNLVL DAEE+ + RK +G ++++GD + +
Sbjct: 27 FRGTLDGYDIHMNLVLLDAEEIQNGEVVRK-VGSVVIRGDTVVFV 70
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 33 GFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGNSIVMV 70
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR G+D +MNLVLD+AEE+ + K G ++++GDN+ +
Sbjct: 27 FRGELKGYDIHMNLVLDNAEELREGEVVSK-FGSVVIRGDNVVYV 70
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 9/45 (20%)
Query: 25 FDEYMNLVLDDAEEVHI--KKNTRKP-------LGRILLKGDNIT 60
FD++MNL+L D EE KN++ P LG +LL+G+NI
Sbjct: 34 FDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGENIV 78
>sp|Q17QN3|RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N OS=Bos
taurus GN=SNRPN PE=2 SV=1
Length = 240
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 9/52 (17%)
Query: 24 GFDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNITLMMNTG 66
FD++MNL+L D +E IK KN ++P LG +LL+G+N+ M G
Sbjct: 33 AFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+ + G+D YMN+VL +A E+ I + RIL++GDN+ +
Sbjct: 32 YSGILEGYDVYMNVVLQNASEI-INGENKGVFDRILVRGDNVIFV 75
>sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein-associated protein N OS=Rattus
norvegicus GN=Snrpn PE=2 SV=1
Length = 240
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 9/52 (17%)
Query: 24 GFDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNITLMMNTG 66
FD++MNL+L D +E IK KN ++P LG +LL+G+N+ M G
Sbjct: 33 AFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
>sp|Q5R6I0|RSMN_PONAB Small nuclear ribonucleoprotein-associated protein N OS=Pongo
abelii GN=SNRPN PE=2 SV=1
Length = 240
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 9/52 (17%)
Query: 24 GFDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNITLMMNTG 66
FD++MNL+L D +E IK KN ++P LG +LL+G+N+ M G
Sbjct: 33 AFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
>sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N OS=Mus
musculus GN=Snrpn PE=2 SV=1
Length = 240
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 9/52 (17%)
Query: 24 GFDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNITLMMNTG 66
FD++MNL+L D +E IK KN ++P LG +LL+G+N+ M G
Sbjct: 33 AFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
>sp|Q60HD3|RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N OS=Macaca
fascicularis GN=SNRPN PE=2 SV=1
Length = 240
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 9/52 (17%)
Query: 24 GFDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNITLMMNTG 66
FD++MNL+L D +E IK KN ++P LG +LL+G+N+ M G
Sbjct: 33 AFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo
sapiens GN=SNRPN PE=1 SV=1
Length = 240
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 9/52 (17%)
Query: 24 GFDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNITLMMNTG 66
FD++MNL+L D +E IK KN ++P LG +LL+G+N+ M G
Sbjct: 33 AFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 7/51 (13%)
Query: 24 GFDEYMNLVLDDAEEVHI-----KKNTR--KPLGRILLKGDNITLMMNTGK 67
GFD+++N++L+DA E I +N + + GR+LL G+NI +++ GK
Sbjct: 36 GFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAILVPGGK 86
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus
gallus GN=SNRPB PE=2 SV=1
Length = 240
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 9/52 (17%)
Query: 24 GFDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNITLMMNTG 66
FD++MNL+L D +E IK KN+++P LG +LL+G+N+ M G
Sbjct: 33 AFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSMTVEG 84
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR G+D +MNLVLD+AEE+ + K ++++GDN+ +
Sbjct: 27 FRGELKGYDIHMNLVLDNAEELREGEVVSK-FSSVVIRGDNVVYV 70
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+ + G+D YMN+VL +A E+ I + R+L++GDN+ +
Sbjct: 32 YSGILEGYDVYMNIVLQNASEI-INGENKGVYDRVLVRGDNVIFV 75
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
FR G+D +MNLVLD+AEE+ + K ++++GDN+ +
Sbjct: 27 FRGELKGYDIHMNLVLDNAEELRDGEVVSK-FSSVVIRGDNVVYV 70
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 60
GFD++MNLV+D+ EV+ N + +G ++++G+++
Sbjct: 34 GFDQFMNLVVDNTVEVN--GNEKNDIGMVVIRGNSVV 68
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
GFD++MNLV+D+ EV+ N + +G ++++G++I
Sbjct: 34 GFDQFMNLVVDNTVEVN--GNDKTDIGMVVIRGNSI 67
>sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 /
OT-3) GN=PH1518.2 PE=3 SV=1
Length = 75
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 65
FR G+D ++N+VL DAE V + +K G+I+++GDN+ + T
Sbjct: 27 FRGRLIGYDIHLNVVLADAEMVQDGEVVKK-YGKIVIRGDNVLAISPT 73
>sp|P34659|RUXF_CAEEL Probable small nuclear ribonucleoprotein F OS=Caenorhabditis
elegans GN=snr-5 PE=1 SV=1
Length = 85
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 26 DEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
D YMNL L AEE +I N++ LG IL++ +N+
Sbjct: 39 DSYMNLQLAHAEE-YIDGNSQGNLGEILIRCNNV 71
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 9/54 (16%)
Query: 16 LIFRFLQSGFDEYMNLVLDDAEEVHI-------KKNTRKPLGRILLKGDNITLM 62
++ RFL FD++MN+V+ DAEE + ++ LG IL++G+ + M
Sbjct: 28 IVGRFL--AFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLGMILIRGETVVSM 79
>sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B' OS=Macropus
eugenii GN=SNRPB PE=2 SV=1
Length = 240
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 24 GFDEYMNLVLDDAEEV---------HIKKNTRKPLGRILLKGDNITLMMNTG 66
FD++MNL+L D +E ++ ++ LG +LL+G+N+ M G
Sbjct: 33 AFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 25 FDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
+D+++N++L DAEE I + + + LG L++GD++ ++
Sbjct: 38 YDQHLNIILGDAEE--IGETSIRRLGLTLVRGDSVVVI 73
>sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein-associated protein B (Fragment)
OS=Rattus norvegicus GN=Snrpb PE=2 SV=1
Length = 214
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 24 GFDEYMNLVLDDAEEV---------HIKKNTRKPLGRILLKGDNITLMMNTG 66
FD++MNL+L D +E ++ ++ LG +LL+G+N+ M G
Sbjct: 16 AFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 67
>sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium
discoideum GN=snrpG PE=3 SV=1
Length = 85
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 24 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 62
GFD +MN+ L D EV + + +G ++++G++I LM
Sbjct: 35 GFDTFMNIALKDTVEV-VSPTEKYEIGMVIIRGNSILLM 72
>sp|Q9VN14|CONT_DROME Contactin OS=Drosophila melanogaster GN=Cont PE=1 SV=2
Length = 1390
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 4 TKVQRIMTQPINLIFRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITL 61
T QRI+++ +LIF ++ FDE +++ + KN GRI++ + +T+
Sbjct: 853 TPPQRIVSKEHDLIFLHCEAAFDELLDIAYVWKHNGEVLKNNHDGTGRIIVDWNRLTV 910
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B'
OS=Monodelphis domestica GN=SNRPB PE=2 SV=1
Length = 240
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 24 GFDEYMNLVLDDAEEV---------HIKKNTRKPLGRILLKGDNITLMMNTG 66
FD++MNL+L D +E ++ ++ LG +LL+G+N+ M G
Sbjct: 33 AFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B'
OS=Homo sapiens GN=SNRPB PE=1 SV=2
Length = 240
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 25 FDEYMNLVLDDAEEV---------HIKKNTRKPLGRILLKGDNITLMMNTG 66
FD++MNL+L D +E ++ ++ LG +LL+G+N+ M G
Sbjct: 34 FDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B'
OS=Erinaceus europaeus GN=SNRPB PE=2 SV=1
Length = 240
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 25 FDEYMNLVLDDAEEV---------HIKKNTRKPLGRILLKGDNITLMMNTG 66
FD++MNL+L D +E ++ ++ LG +LL+G+N+ M G
Sbjct: 34 FDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84
>sp|Q5JIE0|RUXX_PYRKO Putative snRNP Sm-like protein OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0976 PE=3
SV=1
Length = 76
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 59
FR G+D ++N+VL DAE + + +K G+I+++GDN+
Sbjct: 27 FRGKLIGYDIHLNVVLADAELIQDGEVVKK-YGKIVIRGDNV 67
>sp|Q9V0Y8|RUXX_PYRAB Putative snRNP Sm-like protein OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB06500 PE=1 SV=1
Length = 75
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 18 FRFLQSGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 65
FR G+D ++N+VL DAE + K G+I+++GDN+ + T
Sbjct: 27 FRGRLIGYDIHLNVVLADAEMIQ-DGEVVKRYGKIVIRGDNVLAISPT 73
>sp|O60032|HYMA_EMENI Conidiophore development protein hymA OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=hymA PE=3 SV=1
Length = 384
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSGFDEYM---NLVLDDAEEVHIKKNTRKPLGRILLKGDN 58
A T + I+T+ +L+ +L + FD + N L +E K+ + K LG ILL N
Sbjct: 209 AFTTFREILTRHKSLVTGYLATNFDYFFAQFNTFLVQSESYVTKRQSIKLLGEILLDRAN 268
Query: 59 ITLMM 63
++MM
Sbjct: 269 YSVMM 273
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,377,368
Number of Sequences: 539616
Number of extensions: 711675
Number of successful extensions: 1869
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1810
Number of HSP's gapped (non-prelim): 68
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)