Query 035343
Match_columns 67
No_of_seqs 27 out of 29
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 18:20:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k0m_A Uncharacterized protein 89.2 0.19 6.6E-06 32.2 2.0 33 6-44 31-63 (104)
2 4gud_A Imidazole glycerol phos 81.2 0.27 9.1E-06 31.4 -0.3 9 30-38 182-190 (211)
3 2kl4_A BH2032 protein; NB7804A 80.8 0.49 1.7E-05 29.0 0.9 29 14-46 19-47 (118)
4 2oc6_A YDHG protein; secretion 80.3 0.53 1.8E-05 29.2 0.9 28 15-46 18-45 (124)
5 2i8d_A Uncharacterized conserv 79.9 0.55 1.9E-05 29.2 0.9 28 15-46 18-45 (123)
6 1i1q_B Anthranilate synthase c 66.4 1.1 3.7E-05 28.5 -0.2 8 30-37 166-173 (192)
7 3d54_D Phosphoribosylformylgly 64.4 1.6 5.3E-05 27.5 0.2 11 30-40 183-193 (213)
8 2vqe_I 30S ribosomal protein S 60.6 9.3 0.00032 25.2 3.5 29 15-43 71-99 (128)
9 1gpw_B Amidotransferase HISH; 58.9 1.8 6E-05 27.4 -0.3 9 30-38 175-183 (201)
10 1qdl_B Protein (anthranilate s 58.6 1.8 6.2E-05 27.6 -0.2 9 30-38 172-180 (195)
11 3p1f_A CREB-binding protein; s 58.0 12 0.00042 22.5 3.5 28 10-37 4-31 (119)
12 3r8n_I 30S ribosomal protein S 58.0 5.5 0.00019 26.3 2.0 28 15-42 70-97 (127)
13 1ka9_H Imidazole glycerol phos 57.1 2 6.7E-05 27.4 -0.3 9 30-38 175-183 (200)
14 1wl8_A GMP synthase [glutamine 55.7 2.3 7.7E-05 26.7 -0.2 8 30-37 163-170 (189)
15 1o1y_A Conserved hypothetical 53.5 2.7 9.4E-05 28.0 -0.0 10 30-39 182-191 (239)
16 2w7t_A CTP synthetase, putativ 52.0 2.7 9.2E-05 28.8 -0.3 9 30-38 230-238 (273)
17 1pzl_A Hepatocyte nuclear fact 51.0 25 0.00085 22.4 4.2 30 10-39 159-192 (237)
18 2vpi_A GMP synthase; guanine m 48.7 3.4 0.00012 27.3 -0.2 9 30-38 186-194 (218)
19 4abx_A DNA repair protein RECN 48.0 16 0.00056 23.5 3.1 30 13-42 119-151 (175)
20 2ywj_A Glutamine amidotransfer 46.6 3.6 0.00012 25.6 -0.3 9 30-38 162-170 (186)
21 3l7n_A Putative uncharacterize 46.1 4.2 0.00014 26.8 -0.0 11 30-40 176-186 (236)
22 2ctr_A DNAJ homolog subfamily 44.6 12 0.00042 21.4 1.8 25 13-37 16-40 (88)
23 2dn9_A DNAJ homolog subfamily 44.4 13 0.00043 20.7 1.8 24 14-37 17-40 (79)
24 3fij_A LIN1909 protein; 11172J 44.3 4.4 0.00015 27.1 -0.1 9 30-38 215-223 (254)
25 2och_A Hypothetical protein DN 44.2 13 0.00044 20.5 1.8 23 15-37 19-41 (73)
26 2a9v_A GMP synthase; structura 43.6 4.6 0.00016 26.4 -0.2 9 30-38 176-184 (212)
27 2p1t_A Retinoic acid receptor 43.2 30 0.001 22.3 3.7 30 10-39 159-192 (240)
28 1a9x_B Carbamoyl phosphate syn 43.2 4.5 0.00015 30.0 -0.3 9 30-38 349-357 (379)
29 1hdj_A Human HSP40, HDJ-1; mol 43.1 13 0.00044 20.6 1.7 23 15-37 14-36 (77)
30 3m3p_A Glutamine amido transfe 43.0 5.1 0.00018 27.5 0.0 10 30-39 173-182 (250)
31 2ej7_A HCG3 gene; HCG3 protein 42.2 11 0.00039 21.0 1.4 24 14-37 19-42 (82)
32 2yua_A Williams-beuren syndrom 41.6 14 0.00046 21.8 1.8 25 13-37 26-50 (99)
33 2ys8_A RAB-related GTP-binding 40.2 16 0.00053 21.3 1.8 25 13-37 36-60 (90)
34 2ctp_A DNAJ homolog subfamily 39.6 13 0.00046 20.6 1.4 23 15-37 18-40 (78)
35 2dmx_A DNAJ homolog subfamily 39.4 9.5 0.00033 21.9 0.8 21 16-36 21-41 (92)
36 2ctq_A DNAJ homolog subfamily 38.8 16 0.00055 22.0 1.8 26 12-37 28-53 (112)
37 3u5c_Q RP61R, 40S ribosomal pr 38.6 23 0.00078 23.6 2.7 27 15-41 75-106 (143)
38 1l9x_A Gamma-glutamyl hydrolas 38.3 6 0.0002 27.7 -0.2 9 30-38 238-246 (315)
39 1h97_A Globin-3; HET: HEM; 1.1 38.3 41 0.0014 20.7 3.7 34 9-42 15-48 (147)
40 2o37_A Protein SIS1; HSP40, J- 38.3 17 0.0006 21.0 1.8 24 14-37 18-41 (92)
41 2cug_A Mkiaa0962 protein; DNAJ 37.9 17 0.00059 20.8 1.8 23 14-36 27-49 (88)
42 2dk8_A DNA-directed RNA polyme 37.5 18 0.00061 22.1 1.9 12 20-31 45-56 (81)
43 2v4u_A CTP synthase 2; pyrimid 37.5 6.6 0.00023 27.2 -0.1 9 30-38 250-258 (289)
44 2heo_A Z-DNA binding protein 1 37.1 21 0.00073 19.6 2.0 29 14-42 4-33 (67)
45 1e6i_A Transcriptional activat 37.0 29 0.001 21.2 2.8 30 14-44 71-100 (121)
46 2vyw_A Hemoglobin; trematode, 35.5 49 0.0017 20.4 3.7 33 10-42 17-49 (148)
47 2ctw_A DNAJ homolog subfamily 35.5 19 0.00065 21.6 1.8 25 13-37 26-50 (109)
48 4axv_A MPAA; hydrolase; HET: M 35.0 16 0.00053 24.1 1.4 21 15-36 223-243 (243)
49 1wjz_A 1700030A21RIK protein; 34.9 12 0.00041 21.4 0.7 24 13-36 25-48 (94)
50 1ymt_A Steroidogenic factor 1; 34.8 49 0.0017 21.6 3.8 30 11-40 168-201 (246)
51 3tqi_A GMP synthase [glutamine 34.2 8.1 0.00028 29.1 -0.1 9 30-38 181-189 (527)
52 1bq0_A DNAJ, HSP40; chaperone, 34.0 17 0.00058 21.4 1.3 24 14-37 13-36 (103)
53 2lgw_A DNAJ homolog subfamily 33.7 23 0.0008 21.0 1.9 25 13-37 11-35 (99)
54 2ywd_A Glutamine amidotransfer 33.6 7.3 0.00025 24.1 -0.4 8 30-37 169-176 (191)
55 4adn_A FAR1; antibiotic resist 33.5 38 0.0013 24.1 3.3 28 11-38 35-62 (222)
56 1ffk_F Ribosomal protein L10E; 33.2 37 0.0013 23.0 3.1 20 13-32 56-75 (157)
57 3g0l_A Hwalp4, bromodomain adj 33.2 38 0.0013 20.3 2.8 29 15-44 72-100 (117)
58 2zkq_i 40S ribosomal protein S 33.2 28 0.00096 23.3 2.5 28 15-42 78-110 (146)
59 3bbn_I Ribosomal protein S9; s 32.9 30 0.001 24.5 2.7 28 15-42 140-167 (197)
60 2xzm_I RPS16E; ribosome, trans 32.4 33 0.0011 23.0 2.7 28 15-42 77-109 (145)
61 2i7k_A Bromodomain-containing 32.3 31 0.0011 21.1 2.4 30 13-43 65-94 (117)
62 1gpm_A GMP synthetase, XMP ami 32.1 9.1 0.00031 28.7 -0.1 9 30-38 178-186 (525)
63 2guz_A Mitochondrial import in 31.7 26 0.00088 19.5 1.8 21 16-36 27-47 (71)
64 3cqv_A Nuclear receptor subfam 31.6 70 0.0024 20.1 4.0 30 11-40 138-171 (199)
65 1vco_A CTP synthetase; tetrame 31.6 9.8 0.00034 29.7 -0.0 9 30-38 519-527 (550)
66 2e2r_A Estrogen-related recept 31.6 58 0.002 21.3 3.7 30 10-39 165-198 (244)
67 2nxx_A Ultraspiracle (USP, NR2 31.5 64 0.0022 20.8 3.9 29 11-39 156-188 (235)
68 3uow_A GMP synthetase; structu 31.2 9.5 0.00033 29.1 -0.2 9 30-38 206-214 (556)
69 3r2p_A Apolipoprotein A-I; amp 30.8 4.4 0.00015 26.5 -1.8 14 50-63 8-21 (185)
70 3r75_A Anthranilate/para-amino 30.8 9.5 0.00032 30.0 -0.2 10 29-38 609-618 (645)
71 2ywb_A GMP synthase [glutamine 30.8 9.8 0.00034 28.3 -0.1 9 30-38 161-169 (503)
72 3ew8_A HD8, histone deacetylas 30.7 32 0.0011 25.9 2.7 24 13-36 357-380 (388)
73 3apq_A DNAJ homolog subfamily 30.7 25 0.00087 21.8 1.8 23 15-37 13-35 (210)
74 3v3e_B Nuclear receptor subfam 30.4 57 0.002 21.9 3.7 31 10-40 167-203 (257)
75 2nv0_A Glutamine amidotransfer 30.0 9 0.00031 24.0 -0.4 9 30-38 167-175 (196)
76 3vi8_A Peroxisome proliferator 29.9 61 0.0021 22.1 3.7 30 11-40 195-228 (273)
77 3j20_K 30S ribosomal protein S 29.6 30 0.001 22.8 2.1 28 15-42 72-101 (135)
78 3iu5_A Protein polybromo-1; PB 29.1 48 0.0017 19.8 2.8 29 14-43 69-97 (116)
79 4a69_A Histone deacetylase 3,; 28.8 36 0.0012 25.3 2.6 21 13-33 350-370 (376)
80 3n00_A REV-ERBA-alpha; reverba 28.8 66 0.0022 21.4 3.7 30 10-39 182-215 (245)
81 2iz2_A FTZ-F1 alpha, nuclear h 28.6 75 0.0026 20.8 3.9 30 10-39 165-198 (243)
82 1fcy_A RAR-gamma-1, retinoic a 28.3 79 0.0027 20.4 3.9 29 10-38 161-193 (236)
83 2qsa_A DNAJ homolog DNJ-2; J-d 28.3 34 0.0012 20.2 2.0 23 14-36 25-48 (109)
84 3jvl_A Bromodomain-containing 27.7 49 0.0017 19.8 2.7 29 15-44 73-101 (120)
85 3mb4_A Protein polybromo-1; PB 27.6 49 0.0017 20.1 2.7 29 15-44 80-108 (124)
86 1faf_A Large T antigen; J doma 27.3 33 0.0011 19.6 1.7 21 16-36 25-45 (79)
87 1lbd_A RXR_LBD, retinoid X rec 27.1 71 0.0024 21.2 3.6 27 11-37 202-232 (282)
88 3dzy_A Retinoic acid receptor 26.9 80 0.0027 23.4 4.2 30 9-38 385-418 (467)
89 4alg_A Bromodomain-containing 26.7 49 0.0017 21.1 2.7 28 15-43 93-120 (154)
90 3m1f_V VOPL, putative uncharac 26.7 25 0.00085 18.8 1.0 13 13-25 5-17 (31)
91 1osh_A BIle acid receptor; nuc 26.6 89 0.0031 20.0 3.9 28 11-38 157-188 (232)
92 3ljw_A Protein polybromo-1; al 26.5 57 0.0019 19.7 2.8 29 15-44 73-101 (120)
93 2dat_A Possible global transcr 26.5 52 0.0018 20.0 2.7 28 15-43 78-105 (123)
94 3o36_A Transcription intermedi 26.3 50 0.0017 21.1 2.7 29 15-44 141-169 (184)
95 3d7c_A General control of amin 26.3 54 0.0019 19.5 2.7 28 15-43 66-93 (112)
96 1yoz_A Hypothetical protein AF 26.1 45 0.0015 22.3 2.5 19 7-25 88-109 (116)
97 3ltx_A Estrogen receptor; cons 26.0 81 0.0028 20.6 3.7 29 11-39 155-187 (243)
98 3max_A HD2, histone deacetylas 25.8 44 0.0015 24.9 2.6 19 12-30 347-365 (367)
99 3kmr_A Retinoic acid receptor 25.7 81 0.0028 21.2 3.7 30 10-39 185-218 (266)
100 2ri7_A Nucleosome-remodeling f 25.6 58 0.002 20.4 2.8 28 15-43 131-158 (174)
101 3nxb_A CAT eye syndrome critic 25.3 42 0.0014 20.0 2.1 29 15-44 75-103 (116)
102 3brc_A Conserved protein of un 25.3 38 0.0013 23.6 2.1 22 7-28 15-36 (156)
103 3hme_A Bromodomain-containing 25.3 61 0.0021 19.7 2.8 29 15-44 72-100 (123)
104 3k2j_A Protein polybromo-1; PB 25.2 60 0.0021 20.1 2.8 28 15-43 82-109 (130)
105 2yyn_A Transcription intermedi 25.1 56 0.0019 20.3 2.7 29 15-44 80-108 (135)
106 2ouo_A HUNK1 protein, bromodom 24.5 59 0.002 20.1 2.7 29 15-44 86-114 (130)
107 1s1m_A CTP synthase; CTP synth 24.3 15 0.00052 28.7 -0.1 9 30-38 512-520 (545)
108 2iss_D Glutamine amidotransfer 24.3 14 0.00048 23.6 -0.3 9 30-38 187-195 (208)
109 1iur_A KIAA0730 protein; DNAJ 24.3 23 0.00079 20.9 0.7 21 16-36 28-48 (88)
110 1ovl_A Orphan nuclear receptor 23.9 94 0.0032 20.5 3.7 23 10-32 189-211 (271)
111 3u9q_A Peroxisome proliferator 23.8 92 0.0031 21.1 3.7 29 10-38 191-223 (269)
112 3tlp_A Protein polybromo-1; PB 23.4 63 0.0022 20.1 2.7 28 15-43 90-117 (150)
113 1q7r_A Predicted amidotransfer 23.4 15 0.00051 23.7 -0.3 12 27-38 184-197 (219)
114 3ilz_A Thyroid hormone recepto 23.4 97 0.0033 20.6 3.8 29 10-38 187-219 (267)
115 2l6l_A DNAJ homolog subfamily 23.0 44 0.0015 20.8 1.9 24 13-36 19-42 (155)
116 2qwo_B Putative tyrosine-prote 22.5 28 0.00096 21.2 0.8 22 15-36 44-65 (92)
117 3k6p_A Steroid hormone recepto 22.4 89 0.003 20.5 3.4 22 11-32 166-187 (248)
118 3p0u_A Nuclear receptor subfam 22.4 83 0.0028 20.7 3.2 29 11-39 160-192 (249)
119 3plz_A FTZ-F1 related protein; 22.3 1.1E+02 0.0039 20.3 3.9 30 10-39 178-211 (257)
120 2d9e_A Peregrin; four-helix bu 22.3 70 0.0024 19.5 2.7 28 15-43 66-93 (121)
121 3fzg_A 16S rRNA methylase; met 22.2 25 0.00084 24.5 0.6 21 26-46 19-39 (200)
122 1g2n_A Ultraspiracle protein; 22.1 1.2E+02 0.004 20.0 4.0 28 11-38 179-210 (264)
123 2oss_A HUNK1 protein, bromodom 22.1 75 0.0025 19.5 2.8 30 14-44 81-110 (127)
124 3q5w_A Protein CUT8; proteasom 22.0 47 0.0016 24.1 2.1 23 23-45 68-90 (245)
125 1l4d_B Streptokinase; plasmino 21.9 29 0.001 23.3 0.9 21 10-30 47-67 (122)
126 3cjw_A COUP transcription fact 21.7 1.2E+02 0.0042 19.5 3.9 28 11-38 157-188 (244)
127 3b0t_A Vitamin D3 receptor; nu 21.7 1.2E+02 0.0042 19.6 3.9 24 11-34 176-203 (254)
128 1yhu_B Giant hemoglobins B cha 21.6 85 0.0029 18.6 2.9 25 18-42 26-50 (144)
129 2grc_A Probable global transcr 21.5 74 0.0025 19.5 2.7 28 15-43 77-104 (129)
130 3rcw_A Bromodomain-containing 21.4 74 0.0025 19.5 2.7 28 15-43 72-99 (135)
131 2lem_A Apolipoprotein A-I; lip 21.3 8.7 0.0003 25.8 -1.8 13 51-63 7-19 (216)
132 1sqn_A PR, progesterone recept 21.3 69 0.0024 21.3 2.7 23 10-32 161-183 (261)
133 3mb3_A PH-interacting protein; 21.3 80 0.0027 19.3 2.8 29 14-43 79-108 (135)
134 1xdk_B RAR-beta, retinoic acid 21.2 85 0.0029 21.4 3.2 29 11-39 189-221 (303)
135 4aya_A DNA-binding protein inh 21.2 65 0.0022 20.4 2.4 33 9-44 57-94 (97)
136 3a0y_A Sensor protein; ATP-LID 20.8 70 0.0024 17.8 2.3 24 12-35 42-65 (152)
137 2vxo_A GMP synthase [glutamine 20.4 19 0.00066 28.5 -0.3 9 30-38 191-199 (697)
138 3ipq_A Oxysterols receptor LXR 20.2 1.2E+02 0.0042 20.3 3.8 29 10-38 206-238 (283)
No 1
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=89.16 E-value=0.19 Score=32.16 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=24.4
Q ss_pred cCCCCccCCHHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343 6 SDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGV 44 (67)
Q Consensus 6 a~Tg~KV~~~e~LE~IRlTIiNNll~yHPEsse~la~G~ 44 (67)
...|++|.+.|. +++-.||+||||..+.+..|.
T Consensus 31 y~~g~~l~~~d~------~~l~~lL~~HP~~~~KiG~Gi 63 (104)
T 2k0m_A 31 YRPGDIVSTVDG------AFLVEALKRHPDATSKIGPGV 63 (104)
T ss_dssp SCTTEECCHHHH------HHHHHHHHTSTTHHHHHTTCE
T ss_pred CCCCCccCHHHH------HHHHHHHHhCCcHHHhcCCCc
Confidence 345677766532 568889999999999987664
No 2
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=81.24 E-value=0.27 Score=31.40 Aligned_cols=9 Identities=67% Similarity=1.147 Sum_probs=7.5
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||++.
T Consensus 182 vQFHPE~s~ 190 (211)
T 4gud_A 182 VQFHPERSS 190 (211)
T ss_dssp ESSCGGGSH
T ss_pred EEccCEecC
Confidence 699999863
No 3
>2kl4_A BH2032 protein; NB7804A, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; NMR {Bacillus halodurans}
Probab=80.81 E-value=0.49 Score=29.00 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHHhhCccchhhhhccccc
Q 035343 14 DPEVLEAIRLIVINNLLQYHPESSSQLAMGVTF 46 (67)
Q Consensus 14 ~~e~LE~IRlTIiNNll~yHPEsse~la~G~~f 46 (67)
.-+.|+++|..|..+. |+..|.+.+|.++
T Consensus 19 ~r~~l~~Lr~~I~~~~----p~l~E~ikwg~P~ 47 (118)
T 2kl4_A 19 HRDRTEEILSWVAATF----PNLEPQMKWNTPM 47 (118)
T ss_dssp GHHHHHHHHHHHHHHC----TTCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHC----CCcceeeEcCcCe
Confidence 3468999999998875 9999999999875
No 4
>2oc6_A YDHG protein; secretion chaperone-like fold, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Bacillus subtilis} SCOP: d.198.4.1
Probab=80.33 E-value=0.53 Score=29.19 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhccccc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMGVTF 46 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G~~f 46 (67)
-+.|+++|..|..+. |+..|.+.+|.++
T Consensus 18 r~~l~~Lr~lI~~~~----P~l~E~ikwg~P~ 45 (124)
T 2oc6_A 18 RERTEEVLTWIKNKY----PNLHTEIKWNQPM 45 (124)
T ss_dssp HHHHHHHHHHHHHHS----TTSEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHC----CCCceEeEcCCCe
Confidence 468999999998875 9999999999865
No 5
>2i8d_A Uncharacterized conserved protein of COG5646; ZP_00384875.1, structural genomics, PSI-2, protein structure initiative; HET: MSE UNL; 1.69A {Lactobacillus casei} SCOP: d.198.4.1
Probab=79.90 E-value=0.55 Score=29.15 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhccccc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMGVTF 46 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G~~f 46 (67)
-+.|+++|..|..+. |+..|.+.+|.++
T Consensus 18 r~~l~~Lr~lI~~~~----P~l~E~ikwg~P~ 45 (123)
T 2i8d_A 18 LTRVESLFANMQAQF----PQLKLEFKWNQPM 45 (123)
T ss_dssp HHHHHHHHHHHHHHC----TTCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHC----CCceeEEEcCcCE
Confidence 468999999998875 9999999999875
No 6
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=66.40 E-value=1.1 Score=28.51 Aligned_cols=8 Identities=63% Similarity=1.140 Sum_probs=7.2
Q ss_pred HhhCccch
Q 035343 30 LQYHPESS 37 (67)
Q Consensus 30 l~yHPEss 37 (67)
+|+|||++
T Consensus 166 vQfHPE~~ 173 (192)
T 1i1q_B 166 FQFHPESI 173 (192)
T ss_dssp ESSBTTST
T ss_pred EEccCccc
Confidence 79999987
No 7
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=64.41 E-value=1.6 Score=27.52 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=8.7
Q ss_pred HhhCccchhhh
Q 035343 30 LQYHPESSSQL 40 (67)
Q Consensus 30 l~yHPEsse~l 40 (67)
+|+|||.+...
T Consensus 183 vQfHPE~~~~~ 193 (213)
T 3d54_D 183 LMPHPERAVEE 193 (213)
T ss_dssp ECSCSTTTTST
T ss_pred EeCCHHHhcCH
Confidence 69999997643
No 8
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=60.59 E-value=9.3 Score=25.19 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhcc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMG 43 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G 43 (67)
+.+-++||+.|-.-|++|.||....|..-
T Consensus 71 sgQA~AiR~gIarAL~~~~~~~r~~Lk~~ 99 (128)
T 2vqe_I 71 SGQIDAIKLGIARALVQYNPDYRAKLKPL 99 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHTTT
T ss_pred ehHHHHHHHHHHHHHHHHCHHHHHHHHHC
Confidence 56789999999999999999998888753
No 9
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=58.88 E-value=1.8 Score=27.42 Aligned_cols=9 Identities=67% Similarity=1.165 Sum_probs=7.5
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||++.
T Consensus 175 vQfHPE~~~ 183 (201)
T 1gpw_B 175 FQFHPEKSS 183 (201)
T ss_dssp ESSCGGGSH
T ss_pred EECCCcccC
Confidence 699999873
No 10
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=58.59 E-value=1.8 Score=27.59 Aligned_cols=9 Identities=56% Similarity=1.051 Sum_probs=7.7
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||++.
T Consensus 172 vQfHPE~~~ 180 (195)
T 1qdl_B 172 VQFHPESVG 180 (195)
T ss_dssp ESSBTTSTT
T ss_pred EecCCCCCC
Confidence 799999875
No 11
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=58.03 E-value=12 Score=22.55 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=24.7
Q ss_pred CccCCHHHHHHHHHHHHHHHHhhCccch
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~yHPEss 37 (67)
|++.+++.|-..=+.+|..|+..||.|.
T Consensus 4 ~~~~~~~el~~~l~~~l~~l~~~~~~s~ 31 (119)
T 3p1f_A 4 KKIFKPEELRQALMPTLEALYRQDPESL 31 (119)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTCTTTTG
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 6788999999999999999999999764
No 12
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=57.95 E-value=5.5 Score=26.28 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAM 42 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~ 42 (67)
+.+-++||+.|-.-|++|.||.-..|..
T Consensus 70 ~gQa~Air~aIarAL~~~d~~~r~~Lk~ 97 (127)
T 3r8n_I 70 SGQAGAIRHGITRALMEYDESLRSELRK 97 (127)
T ss_dssp HHHHHHHHHHHHTTTTTTCSSSTTTTTT
T ss_pred ecHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 5678999999999999999999887765
No 13
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=57.11 E-value=2 Score=27.36 Aligned_cols=9 Identities=56% Similarity=0.940 Sum_probs=7.6
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||++.
T Consensus 175 vQfHPE~~~ 183 (200)
T 1ka9_H 175 PQFHPEKSG 183 (200)
T ss_dssp ESSCTTSSH
T ss_pred EecCCCcCc
Confidence 699999874
No 14
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=55.74 E-value=2.3 Score=26.75 Aligned_cols=8 Identities=50% Similarity=1.120 Sum_probs=7.1
Q ss_pred HhhCccch
Q 035343 30 LQYHPESS 37 (67)
Q Consensus 30 l~yHPEss 37 (67)
+|+|||++
T Consensus 163 vQfHPE~~ 170 (189)
T 1wl8_A 163 VQFHPEVA 170 (189)
T ss_dssp ESSCTTST
T ss_pred EecCCCcC
Confidence 79999986
No 15
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=53.47 E-value=2.7 Score=28.00 Aligned_cols=10 Identities=40% Similarity=0.694 Sum_probs=8.2
Q ss_pred HhhCccchhh
Q 035343 30 LQYHPESSSQ 39 (67)
Q Consensus 30 l~yHPEsse~ 39 (67)
+|+|||++..
T Consensus 182 vQfHPE~~~~ 191 (239)
T 1o1y_A 182 LQFHIEVGAR 191 (239)
T ss_dssp ESSBSSCCHH
T ss_pred EEeCccCCHH
Confidence 6999999754
No 16
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=51.99 E-value=2.7 Score=28.84 Aligned_cols=9 Identities=56% Similarity=0.903 Sum_probs=7.8
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||++.
T Consensus 230 vQfHPE~~~ 238 (273)
T 2w7t_A 230 VQFHPEFIS 238 (273)
T ss_dssp ESSCGGGSC
T ss_pred EeCCCCcCC
Confidence 899999874
No 17
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=50.99 E-value=25 Score=22.35 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=23.8
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh----Cccchhh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY----HPESSSQ 39 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y----HPEsse~ 39 (67)
..+.+++.+|.+|-.+.+.|.+| ||+.+..
T Consensus 159 ~~l~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~R 192 (237)
T 1pzl_A 159 KGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGR 192 (237)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHSSSSCCTTH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhcCCChhhH
Confidence 44678889999999999999987 6765443
No 18
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=48.69 E-value=3.4 Score=27.33 Aligned_cols=9 Identities=44% Similarity=0.781 Sum_probs=7.7
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||.+.
T Consensus 186 vQfHPE~~~ 194 (218)
T 2vpi_A 186 AQFHPEVGL 194 (218)
T ss_dssp ESSCTTSTT
T ss_pred EEcCCCCCC
Confidence 799999864
No 19
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=47.96 E-value=16 Score=23.47 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=22.0
Q ss_pred CCHHHHHHH--HHHHHHHHHhh-Cccchhhhhc
Q 035343 13 DDPEVLEAI--RLIVINNLLQY-HPESSSQLAM 42 (67)
Q Consensus 13 ~~~e~LE~I--RlTIiNNll~y-HPEsse~la~ 42 (67)
-||++|+.| ||..|+.|-.+ +|...+-++.
T Consensus 119 ~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~ 151 (175)
T 4abx_A 119 ADPEALDRVEARLSALSKLKNKYGPTLEDVVEF 151 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 389999998 89999999754 4555554443
No 20
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=46.57 E-value=3.6 Score=25.62 Aligned_cols=9 Identities=56% Similarity=0.992 Sum_probs=7.3
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||.+.
T Consensus 162 vQfHPE~~~ 170 (186)
T 2ywj_A 162 LSFHPELSE 170 (186)
T ss_dssp ESSCGGGST
T ss_pred EECCCCcCC
Confidence 699999764
No 21
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=46.11 E-value=4.2 Score=26.79 Aligned_cols=11 Identities=36% Similarity=0.495 Sum_probs=8.5
Q ss_pred HhhCccchhhh
Q 035343 30 LQYHPESSSQL 40 (67)
Q Consensus 30 l~yHPEsse~l 40 (67)
+|+|||.+..+
T Consensus 176 vQfHPE~~~~~ 186 (236)
T 3l7n_A 176 FQCHLEFTPEL 186 (236)
T ss_dssp ESSBSSCCHHH
T ss_pred EEeCCCCCHHH
Confidence 68999987543
No 22
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.57 E-value=12 Score=21.44 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhCccch
Q 035343 13 DDPEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 13 ~~~e~LE~IRlTIiNNll~yHPEss 37 (67)
......++||..--.=+++|||...
T Consensus 16 ~~~as~~eIk~ayr~l~~~~HPDk~ 40 (88)
T 2ctr_A 16 PKSASERQIKKAFHKLAMKYHPDKN 40 (88)
T ss_dssp CTTCCHHHHHHHHHHHHHHTCTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 3445678999999999999999853
No 23
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.36 E-value=13 Score=20.66 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHhhCccch
Q 035343 14 DPEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 14 ~~e~LE~IRlTIiNNll~yHPEss 37 (67)
.....++||..--.=++++||...
T Consensus 17 ~~a~~~~Ik~ayr~l~~~~HPD~~ 40 (79)
T 2dn9_A 17 RNASQKEIKKAYYQLAKKYHPDTN 40 (79)
T ss_dssp TTCCHHHHHHHHHHHHHHTCTTTC
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCC
Confidence 345568899998888999999853
No 24
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=44.27 E-value=4.4 Score=27.14 Aligned_cols=9 Identities=44% Similarity=0.722 Sum_probs=7.3
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||.+.
T Consensus 215 vQfHPE~~~ 223 (254)
T 3fij_A 215 VQWHPELMF 223 (254)
T ss_dssp ESSCGGGTG
T ss_pred EEcCCccCC
Confidence 599999864
No 25
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=44.17 E-value=13 Score=20.48 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhCccch
Q 035343 15 PEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEss 37 (67)
....++||..--.=.++|||...
T Consensus 19 ~a~~~eIk~ayr~l~~~~HPD~~ 41 (73)
T 2och_A 19 DASDNELKKAYRKMALKFHPDKN 41 (73)
T ss_dssp TCCHHHHHHHHHHHHHHTCTTTC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC
Confidence 44568899998888999999864
No 26
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=43.55 E-value=4.6 Score=26.35 Aligned_cols=9 Identities=44% Similarity=0.840 Sum_probs=7.6
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||++.
T Consensus 176 vQfHPE~~~ 184 (212)
T 2a9v_A 176 TQFHPEVEH 184 (212)
T ss_dssp ESSCTTSTT
T ss_pred EEeCCCCCC
Confidence 799999873
No 27
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=43.25 E-value=30 Score=22.31 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=23.3
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh----Cccchhh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY----HPESSSQ 39 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y----HPEsse~ 39 (67)
..+.++..+|.+|..+.+.|.+| ||+.+..
T Consensus 159 ~gl~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~R 192 (240)
T 2p1t_A 159 KGLSNPAEVEALREKVYASLEAYCKHKYPEQPGR 192 (240)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhH
Confidence 34678888999999999999877 6764443
No 28
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=43.16 E-value=4.5 Score=29.96 Aligned_cols=9 Identities=44% Similarity=0.623 Sum_probs=7.5
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|||||++.
T Consensus 349 VQFHPE~~~ 357 (379)
T 1a9x_B 349 FQGNPEASP 357 (379)
T ss_dssp ESSCTTCSS
T ss_pred EEeCCcCCC
Confidence 699999864
No 29
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=43.05 E-value=13 Score=20.61 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhCccch
Q 035343 15 PEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEss 37 (67)
....++||..--.=.+++||...
T Consensus 14 ~as~~~Ik~ayr~l~~~~HPD~~ 36 (77)
T 1hdj_A 14 GASDEEIKRAYRRQALRYHPDKN 36 (77)
T ss_dssp TCCHHHHHHHHHHHHHTTCTTTC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC
Confidence 45578899999888999999853
No 30
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=43.03 E-value=5.1 Score=27.47 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=8.4
Q ss_pred HhhCccchhh
Q 035343 30 LQYHPESSSQ 39 (67)
Q Consensus 30 l~yHPEsse~ 39 (67)
+|+|||.+..
T Consensus 173 vQfHPE~~~~ 182 (250)
T 3m3p_A 173 FQCHIEMQAH 182 (250)
T ss_dssp ESSCTTCCHH
T ss_pred EEeCCcCCHH
Confidence 6999998765
No 31
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.23 E-value=11 Score=21.00 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHHhhCccch
Q 035343 14 DPEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 14 ~~e~LE~IRlTIiNNll~yHPEss 37 (67)
.....++||..--.=+++|||...
T Consensus 19 ~~as~~eIk~ayr~l~~~~HPDk~ 42 (82)
T 2ej7_A 19 RQASSEAIKKAYRKLALKWHPDKN 42 (82)
T ss_dssp TTCCHHHHHHHHHHHHTTSCTTTC
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCC
Confidence 345678999999888999999853
No 32
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.64 E-value=14 Score=21.75 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhCccch
Q 035343 13 DDPEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 13 ~~~e~LE~IRlTIiNNll~yHPEss 37 (67)
......++||..--.=.++|||...
T Consensus 26 ~~~as~~eIk~ayr~l~~~~HPDk~ 50 (99)
T 2yua_A 26 PSTATQAQIKAAYYRQCFLYHPDRN 50 (99)
T ss_dssp CTTCCHHHHHHHHHHHHHHSCTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 3445678999999999999999854
No 33
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.22 E-value=16 Score=21.27 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhCccch
Q 035343 13 DDPEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 13 ~~~e~LE~IRlTIiNNll~yHPEss 37 (67)
......++||..--.=.++|||.-.
T Consensus 36 ~~~as~~eIk~aYr~la~~~HPDk~ 60 (90)
T 2ys8_A 36 KPGASRDEVNKAYRKLAVLLHPDKC 60 (90)
T ss_dssp CTTCCHHHHHHHHHHHHHHHCTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 3345568899988888999999854
No 34
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.58 E-value=13 Score=20.60 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhCccch
Q 035343 15 PEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEss 37 (67)
....++||..--.=.+++||...
T Consensus 18 ~as~~eIk~ayr~l~~~~HPDk~ 40 (78)
T 2ctp_A 18 GASDEDLKKAYRRLALKFHPDKN 40 (78)
T ss_dssp TCCHHHHHHHHHHHHTTSCTTTC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC
Confidence 34568899999999999999864
No 35
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.42 E-value=9.5 Score=21.93 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhCccc
Q 035343 16 EVLEAIRLIVINNLLQYHPES 36 (67)
Q Consensus 16 e~LE~IRlTIiNNll~yHPEs 36 (67)
...++||..--.=+++|||.-
T Consensus 21 as~~eIk~ayr~l~~~~HPDk 41 (92)
T 2dmx_A 21 ASPEDIKKAYRKLALRWHPDK 41 (92)
T ss_dssp CCTTHHHHHHHHHHHHTCTTT
T ss_pred CCHHHHHHHHHHHHHHHCCCC
Confidence 445789998888899999985
No 36
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.84 E-value=16 Score=21.96 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCccch
Q 035343 12 VDDPEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 12 V~~~e~LE~IRlTIiNNll~yHPEss 37 (67)
|......++||..--.=.++|||.-.
T Consensus 28 v~~~as~~eIk~ayr~l~~~~HPDk~ 53 (112)
T 2ctq_A 28 CDELSSVEQILAEFKVRALECHPDKH 53 (112)
T ss_dssp CCTTSCHHHHHHHHHHHHHTTCTTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 34455678999999999999999853
No 37
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=38.57 E-value=23 Score=23.63 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhh-----Cccchhhhh
Q 035343 15 PEVLEAIRLIVINNLLQY-----HPESSSQLA 41 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~y-----HPEsse~la 41 (67)
+.+-++||+.|-.-|++| +|++...|-
T Consensus 75 sgQA~AiR~aIArAL~~~~~~~vd~~~r~~LK 106 (143)
T 3u5c_Q 75 VSQVYAIRQAIAKGLVAYHQKYVDEQSKNELK 106 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ecHHhHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 567899999999999998 666655554
No 38
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=38.34 E-value=6 Score=27.72 Aligned_cols=9 Identities=44% Similarity=1.014 Sum_probs=7.5
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||.+.
T Consensus 238 VQfHPE~~~ 246 (315)
T 1l9x_A 238 VQWHPEKAP 246 (315)
T ss_dssp ESSCTTHHH
T ss_pred EEeCCCCCc
Confidence 799999864
No 39
>1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2 PDB: 1kfr_A*
Probab=38.33 E-value=41 Score=20.68 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=29.6
Q ss_pred CCccCCHHHHHHHHHHHHHHHHhhCccchhhhhc
Q 035343 9 GRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAM 42 (67)
Q Consensus 9 g~KV~~~e~LE~IRlTIiNNll~yHPEsse~la~ 42 (67)
..|+...+..++|=..++..|+.-|||....+..
T Consensus 15 ~~~~~~~~~~~~~g~~~~~rlF~~~P~~k~~F~~ 48 (147)
T 1h97_A 15 GPHVDTPAHIVETGLGAYHALFTAHPQYISHFSR 48 (147)
T ss_dssp GGGTSSHHHHHHHHHHHHHHHHHHCGGGGGGSGG
T ss_pred ccccCCHHHHHhHHHHHHHHHHHHCchHHHhhhh
Confidence 4577777888999999999999999999998875
No 40
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=38.28 E-value=17 Score=20.99 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHHHhhCccch
Q 035343 14 DPEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 14 ~~e~LE~IRlTIiNNll~yHPEss 37 (67)
.....++||..--.=.++|||.-.
T Consensus 18 ~~as~~eIk~ayr~l~~~~HPDk~ 41 (92)
T 2o37_A 18 PSANEQELKKGYRKAALKYHPDKP 41 (92)
T ss_dssp TTCCHHHHHHHHHHHHHHHCTTST
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCC
Confidence 345578899998888999999854
No 41
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=37.86 E-value=17 Score=20.79 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHHHHhhCccc
Q 035343 14 DPEVLEAIRLIVINNLLQYHPES 36 (67)
Q Consensus 14 ~~e~LE~IRlTIiNNll~yHPEs 36 (67)
.....++||..--.=.++|||..
T Consensus 27 ~~as~~eIk~ayr~l~~~~HPDk 49 (88)
T 2cug_A 27 RTASQADIKKAYKKLAREWHPDK 49 (88)
T ss_dssp TTCCHHHHHHHHHHHHHHSCTTT
T ss_pred CCCCHHHHHHHHHHHHHHHCcCC
Confidence 34557899999999999999985
No 42
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=37.55 E-value=18 Score=22.11 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHh
Q 035343 20 AIRLIVINNLLQ 31 (67)
Q Consensus 20 ~IRlTIiNNll~ 31 (67)
+.|..+||+||+
T Consensus 45 ~~r~~aIN~LL~ 56 (81)
T 2dk8_A 45 QQRAVAINRLLS 56 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 568999999997
No 43
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=37.54 E-value=6.6 Score=27.16 Aligned_cols=9 Identities=67% Similarity=1.051 Sum_probs=7.7
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||+..
T Consensus 250 vQfHPE~~~ 258 (289)
T 2v4u_A 250 VQFHPEFSS 258 (289)
T ss_dssp ESSBGGGGC
T ss_pred EECCCCCCC
Confidence 899999864
No 44
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=37.06 E-value=21 Score=19.58 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHHHHhh-Cccchhhhhc
Q 035343 14 DPEVLEAIRLIVINNLLQY-HPESSSQLAM 42 (67)
Q Consensus 14 ~~e~LE~IRlTIiNNll~y-HPEsse~la~ 42 (67)
+|+.+++.|..||.-|-+- .|-+.+.||.
T Consensus 4 ~~~~m~~~~~~IL~~L~~~~~~~s~~eLA~ 33 (67)
T 2heo_A 4 MLSTGDNLEQKILQVLSDDGGPVAIFQLVK 33 (67)
T ss_dssp -----CHHHHHHHHHHHHHCSCEEHHHHHH
T ss_pred CcccccHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 4555667888888876554 4667777764
No 45
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=37.00 E-value=29 Score=21.17 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343 14 DPEVLEAIRLIVINNLLQYHPESSSQLAMGV 44 (67)
Q Consensus 14 ~~e~LE~IRlTIiNNll~yHPEsse~la~G~ 44 (67)
-.+...++|| |++|-..|+++.+....++.
T Consensus 71 ~~~f~~D~~l-i~~Na~~yN~~~s~i~~~A~ 100 (121)
T 1e6i_A 71 MEDFIYDARL-VFNNCRMYNGENTSYYKYAN 100 (121)
T ss_dssp HHHHHHHHHH-HHHHHHHHSCTTSHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHCCCCCHHHHHHH
Confidence 3466778887 67888889888776655544
No 46
>2vyw_A Hemoglobin; trematode, oxygen binding; HET: HEM; 1.8A {Fasciola hepatica}
Probab=35.53 E-value=49 Score=20.36 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=28.3
Q ss_pred CccCCHHHHHHHHHHHHHHHHhhCccchhhhhc
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQYHPESSSQLAM 42 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~yHPEsse~la~ 42 (67)
.|+...+..+++=..++..|+.-|||....+..
T Consensus 17 ~~~~~~~~~~~~g~~~~~rlF~~~P~~k~~F~~ 49 (148)
T 2vyw_A 17 HHTDTTEHITEMGVSIYKTLFAAHPEYISYFSK 49 (148)
T ss_dssp GGSSSHHHHHHHHHHHHHHHHHHCGGGGGGSGG
T ss_pred cccCChHHHHHHHHHHHHHHHHhCchHHHhhhh
Confidence 456667778889999999999999999999875
No 47
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.50 E-value=19 Score=21.58 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhCccch
Q 035343 13 DDPEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 13 ~~~e~LE~IRlTIiNNll~yHPEss 37 (67)
......++||..--.=.++|||...
T Consensus 26 ~~~as~~eIk~aYr~la~~~HPDk~ 50 (109)
T 2ctw_A 26 DKNATSDDIKKSYRKLALKYHPDKN 50 (109)
T ss_dssp CTTCCHHHHHHHHHHHHHHSCTTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 3445678999999999999999854
No 48
>4axv_A MPAA; hydrolase; HET: MSE; 2.17A {Vibrio harveyi}
Probab=35.04 E-value=16 Score=24.11 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhCccc
Q 035343 15 PEVLEAIRLIVINNLLQYHPES 36 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEs 36 (67)
++..|+-+ ..|.|||+||||.
T Consensus 223 d~~~e~~~-~ai~~~L~~~pel 243 (243)
T 4axv_A 223 DLTIEKHL-DAFIALLQHDPDL 243 (243)
T ss_dssp HHHHHHHH-HHHHHHHTCCC--
T ss_pred cHHHHHHH-HHHHHHHhhCcCC
Confidence 44455554 5677899999983
No 49
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=34.88 E-value=12 Score=21.35 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhCccc
Q 035343 13 DDPEVLEAIRLIVINNLLQYHPES 36 (67)
Q Consensus 13 ~~~e~LE~IRlTIiNNll~yHPEs 36 (67)
......++||..--.=.++|||.-
T Consensus 25 ~~~as~~eIk~aYr~l~~~~HPDk 48 (94)
T 1wjz_A 25 DPSANMSDLKQKYQKLILLYHPDK 48 (94)
T ss_dssp CTTCCHHHHHHHHHHTTSSSCSTT
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCC
Confidence 344567899999999999999987
No 50
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=34.80 E-value=49 Score=21.58 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=24.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHhh----Cccchhhh
Q 035343 11 KVDDPEVLEAIRLIVINNLLQY----HPESSSQL 40 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~y----HPEsse~l 40 (67)
.+.+++.+|.+|..++.-|.+| ||+....+
T Consensus 168 gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf 201 (246)
T 1ymt_A 168 FLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKF 201 (246)
T ss_dssp GSSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 4678899999999999999887 77655443
No 51
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=34.17 E-value=8.1 Score=29.05 Aligned_cols=9 Identities=56% Similarity=1.084 Sum_probs=7.5
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||++.
T Consensus 181 vQFHPE~~~ 189 (527)
T 3tqi_A 181 LQFHPEVTH 189 (527)
T ss_dssp ESBCSSSTT
T ss_pred EEecccccc
Confidence 699999873
No 52
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=34.02 E-value=17 Score=21.39 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHHHHhhCccch
Q 035343 14 DPEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 14 ~~e~LE~IRlTIiNNll~yHPEss 37 (67)
.....++||..--.=.+++||...
T Consensus 13 ~~as~~eIk~ayr~l~~~~HPDk~ 36 (103)
T 1bq0_A 13 KTAEEREIRKAYKRLAMKYHPDRN 36 (103)
T ss_dssp SSCCHHHHHHHHHHHHTTTCTTTC
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCC
Confidence 345568899888888999999753
No 53
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=33.71 E-value=23 Score=21.03 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhCccch
Q 035343 13 DDPEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 13 ~~~e~LE~IRlTIiNNll~yHPEss 37 (67)
......++||..--.=.++|||...
T Consensus 11 ~~~as~~eIk~aYr~la~~~HPDk~ 35 (99)
T 2lgw_A 11 PRSASADDIKKAYRRKALQWHPDKN 35 (99)
T ss_dssp CTTSCHHHHHHHHHHHHHHTSTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 3345578999999999999999853
No 54
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=33.56 E-value=7.3 Score=24.06 Aligned_cols=8 Identities=38% Similarity=0.825 Sum_probs=6.6
Q ss_pred HhhCccch
Q 035343 30 LQYHPESS 37 (67)
Q Consensus 30 l~yHPEss 37 (67)
+|+|||.+
T Consensus 169 vQfHPE~~ 176 (191)
T 2ywd_A 169 SSFHPELT 176 (191)
T ss_dssp ESSCGGGS
T ss_pred EEeCCCCC
Confidence 69999964
No 55
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=33.46 E-value=38 Score=24.10 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=25.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHhhCccchh
Q 035343 11 KVDDPEVLEAIRLIVINNLLQYHPESSS 38 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~yHPEsse 38 (67)
-|.|+..++++|.-+++..+.-.||.++
T Consensus 35 tvnD~~vi~avk~~~~~kI~~~f~~~~~ 62 (222)
T 4adn_A 35 TVNDKETVKVIQSETYNDINEIFGHIDD 62 (222)
T ss_dssp HCCCHHHHHHHHHHHHHHHHTTCSSCCH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcccCCH
Confidence 4789999999999999999999998654
No 56
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=33.24 E-value=37 Score=23.03 Aligned_cols=20 Identities=20% Similarity=-0.007 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 035343 13 DDPEVLEAIRLIVINNLLQY 32 (67)
Q Consensus 13 ~~~e~LE~IRlTIiNNll~y 32 (67)
..++.||+.|.+|-..|...
T Consensus 56 Its~qIEAaRia~nR~lkr~ 75 (157)
T 1ffk_F 56 IRHNALEAARNAANRFVQNS 75 (157)
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 35889999999999999864
No 57
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=33.19 E-value=38 Score=20.28 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMGV 44 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G~ 44 (67)
.+...++|| |++|-..|+++.+....++.
T Consensus 72 ~~f~~D~~l-i~~Na~~yN~~~s~~~~~A~ 100 (117)
T 3g0l_A 72 ETFALDVRL-VFDNCETFNEDDSDIGRAGH 100 (117)
T ss_dssp HHHHHHHHH-HHHHHHHHSCSSSHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHHH
Confidence 456677776 57788888888777665543
No 58
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=33.17 E-value=28 Score=23.30 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhh-----Cccchhhhhc
Q 035343 15 PEVLEAIRLIVINNLLQY-----HPESSSQLAM 42 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~y-----HPEsse~la~ 42 (67)
+.+-++||+.|-.-|++| .|+....|..
T Consensus 78 sgQA~AiR~aIArAL~~~~~k~~d~~~r~~Lk~ 110 (146)
T 2zkq_i 78 VAQIYAIRQSISKALVAYYQKYVDEASKKEIKD 110 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCTTSSSCCCCCS
T ss_pred ehHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 567899999999999999 7876665543
No 59
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=32.87 E-value=30 Score=24.55 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAM 42 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~ 42 (67)
+.+-++||+.|-.-|++|.|+....|..
T Consensus 140 sGQA~AIR~gIARALv~~~~~~r~~LK~ 167 (197)
T 3bbn_I 140 SGQAQAISLGVARALLKVSASHRAPLKQ 167 (197)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGSHHHHT
T ss_pred ehHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 5678999999999999999998888765
No 60
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=32.39 E-value=33 Score=23.00 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhh-----Cccchhhhhc
Q 035343 15 PEVLEAIRLIVINNLLQY-----HPESSSQLAM 42 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~y-----HPEsse~la~ 42 (67)
+.+-++||+.|-.-|++| .|+....|..
T Consensus 77 sgQA~AiR~aIArAL~~~~~k~~d~~~r~~Lk~ 109 (145)
T 2xzm_I 77 TSQVYAIRQALSKGIVAYHAKYVDENSKREIKE 109 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 567899999999999999 8877666654
No 61
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=32.31 E-value=31 Score=21.13 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhCccchhhhhcc
Q 035343 13 DDPEVLEAIRLIVINNLLQYHPESSSQLAMG 43 (67)
Q Consensus 13 ~~~e~LE~IRlTIiNNll~yHPEsse~la~G 43 (67)
.-.+...++|| |.+|-..|+++.|....++
T Consensus 65 s~~ef~~Dv~L-i~~Na~~yN~~~s~i~~~A 94 (117)
T 2i7k_A 65 SIEELKDNFKL-MCTNAMIYNKPETIYYKAA 94 (117)
T ss_dssp SHHHHHHHHHH-HHHHHHHTSCSSSSHHHHH
T ss_pred CHHHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 33467788887 6788888988877655444
No 62
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=32.07 E-value=9.1 Score=28.69 Aligned_cols=9 Identities=44% Similarity=1.003 Sum_probs=7.6
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||++.
T Consensus 178 vQFHPE~~~ 186 (525)
T 1gpm_A 178 VQFHPEVTH 186 (525)
T ss_dssp ESBCTTSTT
T ss_pred EecCCCCCc
Confidence 699999874
No 63
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=31.66 E-value=26 Score=19.51 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhCccc
Q 035343 16 EVLEAIRLIVINNLLQYHPES 36 (67)
Q Consensus 16 e~LE~IRlTIiNNll~yHPEs 36 (67)
...++||..--.=++++||..
T Consensus 27 a~~~eIk~ayr~l~~~~HPDk 47 (71)
T 2guz_A 27 LTKKKLKEVHRKIMLANHPDK 47 (71)
T ss_dssp CCHHHHHHHHHHHHHHHCGGG
T ss_pred CCHHHHHHHHHHHHHHHCCCC
Confidence 557889998888899999986
No 64
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=31.62 E-value=70 Score=20.12 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=23.4
Q ss_pred ccCCHHHHHHHHHHHHHHHHhh----Cccchhhh
Q 035343 11 KVDDPEVLEAIRLIVINNLLQY----HPESSSQL 40 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~y----HPEsse~l 40 (67)
.+.+++.+|++|..++.-|.+| ||+....+
T Consensus 138 gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf 171 (199)
T 3cqv_A 138 GIENVNSVEALQETLIRALRTLIMKNHPNEASIF 171 (199)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 4678999999999999988876 67654443
No 65
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=31.56 E-value=9.8 Score=29.74 Aligned_cols=9 Identities=67% Similarity=0.796 Sum_probs=7.7
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|||||++.
T Consensus 519 VQFHPE~~~ 527 (550)
T 1vco_A 519 LQSHPEFKS 527 (550)
T ss_dssp ESSCGGGGC
T ss_pred EEeCCccCC
Confidence 799999865
No 66
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=31.56 E-value=58 Score=21.34 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=23.8
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh----Cccchhh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY----HPESSSQ 39 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y----HPEsse~ 39 (67)
..+.+++.+|.+|..+..-|.+| ||+....
T Consensus 165 ~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~R 198 (244)
T 2e2r_A 165 MHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRR 198 (244)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHhcCCCcccH
Confidence 35778999999999999999887 7764443
No 67
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=31.54 E-value=64 Score=20.77 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=23.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHhh----Cccchhh
Q 035343 11 KVDDPEVLEAIRLIVINNLLQY----HPESSSQ 39 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~y----HPEsse~ 39 (67)
.+.+++.+|.+|..++.-|.+| ||+....
T Consensus 156 gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~R 188 (235)
T 2nxx_A 156 GIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGR 188 (235)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhH
Confidence 4678999999999999999887 7765443
No 68
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=31.22 E-value=9.5 Score=29.07 Aligned_cols=9 Identities=56% Similarity=0.992 Sum_probs=7.6
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||++.
T Consensus 206 vQFHPE~~~ 214 (556)
T 3uow_A 206 VQYHPEVYE 214 (556)
T ss_dssp ESSCTTSTT
T ss_pred EEcCCCCCc
Confidence 699999874
No 69
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=30.85 E-value=4.4 Score=26.51 Aligned_cols=14 Identities=14% Similarity=-0.021 Sum_probs=10.7
Q ss_pred CCccccceeeeccc
Q 035343 50 PPKQQVFAFWSYFN 63 (67)
Q Consensus 50 pp~k~vd~~~~~~~ 63 (67)
+.....++||.||+
T Consensus 8 ~~e~v~~~~w~Y~~ 21 (185)
T 3r2p_A 8 PWDRVKDLATVYVD 21 (185)
T ss_dssp TTHHHHHHHHHHTH
T ss_pred cHHHHHHHHHHHHH
Confidence 34567789999986
No 70
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=30.79 E-value=9.5 Score=29.96 Aligned_cols=10 Identities=40% Similarity=0.584 Sum_probs=7.7
Q ss_pred HHhhCccchh
Q 035343 29 LLQYHPESSS 38 (67)
Q Consensus 29 ll~yHPEsse 38 (67)
=+|+|||++.
T Consensus 609 GVQFHPE~~~ 618 (645)
T 3r75_A 609 SMQFHAESVL 618 (645)
T ss_dssp EESSBTTSTT
T ss_pred EEEeCCeecC
Confidence 3699999853
No 71
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=30.77 E-value=9.8 Score=28.27 Aligned_cols=9 Identities=44% Similarity=0.988 Sum_probs=7.5
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||.+.
T Consensus 161 vQFHPE~~~ 169 (503)
T 2ywb_A 161 VQFHPEVAH 169 (503)
T ss_dssp ESBCTTSTT
T ss_pred EecCCCccc
Confidence 599999874
No 72
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=30.73 E-value=32 Score=25.89 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhCccc
Q 035343 13 DDPEVLEAIRLIVINNLLQYHPES 36 (67)
Q Consensus 13 ~~~e~LE~IRlTIiNNll~yHPEs 36 (67)
-.++-||.|+.+|+.||=+.-+|-
T Consensus 357 n~~~~l~~i~~~~~~~l~~~~~~~ 380 (388)
T 3ew8_A 357 NEPHRIQQILNYIKGNLKHVVIEG 380 (388)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCHHHHHHHHHHHHHHHhcCCCcc
Confidence 457999999999999998776663
No 73
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=30.65 E-value=25 Score=21.79 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhCccch
Q 035343 15 PEVLEAIRLIVINNLLQYHPESS 37 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEss 37 (67)
.+..++||..--.=.++|||.-.
T Consensus 13 ~a~~~~ik~ay~~l~~~~HPD~~ 35 (210)
T 3apq_A 13 TASSREIRQAFKKLALKLHPDKN 35 (210)
T ss_dssp TCCHHHHHHHHHHHHHHHCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC
Confidence 45567899988888999999764
No 74
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=30.41 E-value=57 Score=21.93 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=23.9
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh------Cccchhhh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY------HPESSSQL 40 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y------HPEsse~l 40 (67)
.-+.+++.+|.+|..++.-|-+| ||+....+
T Consensus 167 ~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~~~~rf 203 (257)
T 3v3e_B 167 HGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCL 203 (257)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcHhhHH
Confidence 45789999999999999988765 77765543
No 75
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=30.01 E-value=9 Score=23.97 Aligned_cols=9 Identities=33% Similarity=0.763 Sum_probs=7.4
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||.+.
T Consensus 167 vQfHPE~~~ 175 (196)
T 2nv0_A 167 CSFHPELTE 175 (196)
T ss_dssp ESSCTTSSS
T ss_pred EEECCccCC
Confidence 699999864
No 76
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=29.87 E-value=61 Score=22.07 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=24.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHhh----Cccchhhh
Q 035343 11 KVDDPEVLEAIRLIVINNLLQY----HPESSSQL 40 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~y----HPEsse~l 40 (67)
-+.+++.+|.+|..++.-|-+| ||+....+
T Consensus 195 gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~~~rF 228 (273)
T 3vi8_A 195 GLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLF 228 (273)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHH
Confidence 4678999999999999988766 78766544
No 77
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.57 E-value=30 Score=22.84 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhC--ccchhhhhc
Q 035343 15 PEVLEAIRLIVINNLLQYH--PESSSQLAM 42 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yH--PEsse~la~ 42 (67)
+.+-++||+.|-.-|++|. ||....|-.
T Consensus 72 ~gQA~AiR~aIarAL~~~~~~~~lr~~l~~ 101 (135)
T 3j20_K 72 MGQAEAARMAIARALVEWTGDMSLKEKFMK 101 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred echHhHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 5678999999999999996 788877754
No 78
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=29.06 E-value=48 Score=19.82 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHHHHhhCccchhhhhcc
Q 035343 14 DPEVLEAIRLIVINNLLQYHPESSSQLAMG 43 (67)
Q Consensus 14 ~~e~LE~IRlTIiNNll~yHPEsse~la~G 43 (67)
-.+...++|| |++|-..|+++.|....++
T Consensus 69 ~~~f~~D~~l-i~~Na~~yN~~~s~~~~~A 97 (116)
T 3iu5_A 69 VNLLTADFQL-LFNNAKSYYKPDSPEYKAA 97 (116)
T ss_dssp HHHHHHHHHH-HHHHHHHHSCTTSHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 3456677776 5777778888777655544
No 79
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=28.84 E-value=36 Score=25.33 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhC
Q 035343 13 DDPEVLEAIRLIVINNLLQYH 33 (67)
Q Consensus 13 ~~~e~LE~IRlTIiNNll~yH 33 (67)
-.++-||.|+.+|+.||=+..
T Consensus 350 n~~~~l~~~~~~~~~~l~~~~ 370 (376)
T 4a69_A 350 NSRQYLDQIRQTIFENLKMLN 370 (376)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHhcCC
Confidence 368999999999999996554
No 80
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=28.79 E-value=66 Score=21.42 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=23.6
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh----Cccchhh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY----HPESSSQ 39 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y----HPEsse~ 39 (67)
..+.+++.+|.+|..++.-|.+| ||+....
T Consensus 182 ~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~R 215 (245)
T 3n00_A 182 SGMENSASVEQLQETLLRALRALVLKNRPLETSR 215 (245)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 35778999999999999998876 6755443
No 81
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=28.62 E-value=75 Score=20.83 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=23.5
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh----Cccchhh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY----HPESSSQ 39 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y----HPEsse~ 39 (67)
..+.+++.+|.+|..++.-|.+| ||+....
T Consensus 165 ~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~R 198 (243)
T 2iz2_A 165 RGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDK 198 (243)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhH
Confidence 34678999999999999999876 6764433
No 82
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=28.33 E-value=79 Score=20.44 Aligned_cols=29 Identities=17% Similarity=0.447 Sum_probs=23.1
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh----Cccchh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY----HPESSS 38 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y----HPEsse 38 (67)
..+.+++.+|.+|..++.-|.+| ||+...
T Consensus 161 ~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~ 193 (236)
T 1fcy_A 161 MDLEEPEKVDKLQEPLLEALRLYARRRRPSQPY 193 (236)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCchh
Confidence 35678999999999999998876 675443
No 83
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=28.28 E-value=34 Score=20.16 Aligned_cols=23 Identities=13% Similarity=0.054 Sum_probs=18.8
Q ss_pred CHH-HHHHHHHHHHHHHHhhCccc
Q 035343 14 DPE-VLEAIRLIVINNLLQYHPES 36 (67)
Q Consensus 14 ~~e-~LE~IRlTIiNNll~yHPEs 36 (67)
..+ ..++||..--.=.++|||.-
T Consensus 25 ~~a~s~~eIk~aYr~l~~~~HPDk 48 (109)
T 2qsa_A 25 REEFDKQKLAKAYRALARKHHPDR 48 (109)
T ss_dssp GGGCCHHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCC
Confidence 345 67889999988899999984
No 84
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=27.66 E-value=49 Score=19.83 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMGV 44 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G~ 44 (67)
.+...++|| |++|-..|+++.+....++.
T Consensus 73 ~~f~~D~~l-i~~Na~~yN~~~s~~~~~A~ 101 (120)
T 3jvl_A 73 QEFGADVRL-MFSNCYKYNPPDHEVVAMAR 101 (120)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHHH
Confidence 455667776 67888888888776655543
No 85
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=27.56 E-value=49 Score=20.09 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMGV 44 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G~ 44 (67)
.+...++|| |.+|-..|+++.+..-.++.
T Consensus 80 ~~f~~D~~l-i~~Na~~yN~~~s~i~~~A~ 108 (124)
T 3mb4_A 80 DSMVEDFVM-MFNNACTYNEPESLIYKDAL 108 (124)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHHH
Confidence 455667776 57888889888776655543
No 86
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=27.26 E-value=33 Score=19.57 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhCccc
Q 035343 16 EVLEAIRLIVINNLLQYHPES 36 (67)
Q Consensus 16 e~LE~IRlTIiNNll~yHPEs 36 (67)
...++||..--.=.++|||.-
T Consensus 25 a~~~eIk~aYr~la~~~HPDk 45 (79)
T 1faf_A 25 GDFGRMQQAYKQQSLLLHPDK 45 (79)
T ss_dssp TCHHHHHHHHHHHHHHSSGGG
T ss_pred CCHHHHHHHHHHHHHHHCcCC
Confidence 446889999888899999985
No 87
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=27.05 E-value=71 Score=21.22 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=21.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHhh----Cccch
Q 035343 11 KVDDPEVLEAIRLIVINNLLQY----HPESS 37 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~y----HPEss 37 (67)
.+.++..+|.+|..++..|.+| ||+..
T Consensus 202 gLs~~~~v~~lq~~~~~~L~~y~~~~~~~~~ 232 (282)
T 1lbd_A 202 GLSNPAEVEALREKVYASLEAYCKHKYPEQP 232 (282)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHSCCST
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 4778888999999999998877 56543
No 88
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=26.87 E-value=80 Score=23.43 Aligned_cols=30 Identities=30% Similarity=0.497 Sum_probs=23.8
Q ss_pred CCccCCHHHHHHHHHHHHHHHHhh----Cccchh
Q 035343 9 GRKVDDPEVLEAIRLIVINNLLQY----HPESSS 38 (67)
Q Consensus 9 g~KV~~~e~LE~IRlTIiNNll~y----HPEsse 38 (67)
...+.+++.+|++|..+.+.|.+| ||+...
T Consensus 385 ~~gL~~~~~Ve~lQe~~~~aL~~Y~~~~~p~~p~ 418 (467)
T 3dzy_A 385 SKGLSNPAEVEALREKVYASLEAYCKHKYPEQPG 418 (467)
T ss_dssp STTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 345778999999999999999887 665443
No 89
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=26.73 E-value=49 Score=21.13 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhcc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMG 43 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G 43 (67)
.+.+.++|| |++|-..|+++.+....++
T Consensus 93 ~ef~~Dv~L-if~Na~~YN~~~s~i~~~A 120 (154)
T 4alg_A 93 SECMQDFNT-MFTNCYIYNKPTDDIVLMA 120 (154)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 466677776 6788888988877665554
No 90
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=26.69 E-value=25 Score=18.85 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHH
Q 035343 13 DDPEVLEAIRLIV 25 (67)
Q Consensus 13 ~~~e~LE~IRlTI 25 (67)
+.|.+.|+||+-+
T Consensus 5 drSKLMEqIRqGV 17 (31)
T 3m1f_V 5 DHSKLMEQIRQGV 17 (31)
T ss_dssp THHHHHHHHHHCC
T ss_pred hHHHHHHHHHhhh
Confidence 4578999999754
No 91
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=26.60 E-value=89 Score=19.97 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=22.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHhh----Cccchh
Q 035343 11 KVDDPEVLEAIRLIVINNLLQY----HPESSS 38 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~y----HPEsse 38 (67)
.+.+++.+|.+|..++.-|.+| ||+...
T Consensus 157 gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~ 188 (232)
T 1osh_A 157 YIKDREAVEKLQEPLLDVLQKLCKIHQPENPQ 188 (232)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHCCCchh
Confidence 4568999999999999988776 675443
No 92
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=26.50 E-value=57 Score=19.69 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMGV 44 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G~ 44 (67)
.+...++|| |++|-..|+++.|....++.
T Consensus 73 ~~f~~D~~l-i~~Na~~yN~~~s~~~~~A~ 101 (120)
T 3ljw_A 73 HAMAKDIDL-LAKNAKTYNEPGSQVFKDAN 101 (120)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHHH
Confidence 355666766 57888888888776655543
No 93
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.48 E-value=52 Score=19.98 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhcc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMG 43 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G 43 (67)
.+...++|| |++|-..|+++.+....++
T Consensus 78 ~~f~~D~~l-i~~Na~~yN~~~s~i~~~A 105 (123)
T 2dat_A 78 GDLEKDVML-LCHNAQTFNLEGSQIYEDS 105 (123)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 456777776 5788888888877655544
No 94
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=26.31 E-value=50 Score=21.12 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMGV 44 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G~ 44 (67)
.+...++|| |++|-..|+++.++.-.++.
T Consensus 141 ~ef~~Dv~l-i~~Na~~yN~~~s~v~~~a~ 169 (184)
T 3o36_A 141 EDFVADFRL-IFQNCAEFNEPDSEVANAGI 169 (184)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHHH
Confidence 466778887 56777788887766555543
No 95
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=26.28 E-value=54 Score=19.47 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhcc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMG 43 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G 43 (67)
.+...++|| |++|-..|+++.|....++
T Consensus 66 ~~f~~Dv~l-i~~Na~~yN~~~s~~~~~A 93 (112)
T 3d7c_A 66 KLFVADLQR-VIANCREYNPPDSEYCRCA 93 (112)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 466778886 5777888888776655544
No 96
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=26.14 E-value=45 Score=22.26 Aligned_cols=19 Identities=42% Similarity=0.686 Sum_probs=13.4
Q ss_pred CCCCcc---CCHHHHHHHHHHH
Q 035343 7 DTGRKV---DDPEVLEAIRLIV 25 (67)
Q Consensus 7 ~Tg~KV---~~~e~LE~IRlTI 25 (67)
|+++|| .|||..+.|-+-|
T Consensus 88 d~e~Ki~kkl~~ev~~~i~~~~ 109 (116)
T 1yoz_A 88 SKGFKIEKKLDPEVINEIALYI 109 (116)
T ss_dssp TTC---CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHhHHHHHH
Confidence 688888 5799999998876
No 97
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=26.01 E-value=81 Score=20.60 Aligned_cols=29 Identities=7% Similarity=0.318 Sum_probs=23.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHhh----Cccchhh
Q 035343 11 KVDDPEVLEAIRLIVINNLLQY----HPESSSQ 39 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~y----HPEsse~ 39 (67)
.+.+++.+|.+|..++.-|.+| ||+....
T Consensus 155 gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~R 187 (243)
T 3ltx_A 155 RLASYNQIFNMQQSLLDAIVDTAQKYHPDNVRH 187 (243)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhH
Confidence 4778999999999999998876 6754433
No 98
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=25.84 E-value=44 Score=24.89 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=16.2
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q 035343 12 VDDPEVLEAIRLIVINNLL 30 (67)
Q Consensus 12 V~~~e~LE~IRlTIiNNll 30 (67)
-..++-||.|+.+|+.||=
T Consensus 347 ~n~~~~l~~i~~~~~~~l~ 365 (367)
T 3max_A 347 QNTPEYMEKIKQRLFENLR 365 (367)
T ss_dssp CCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 3458999999999999983
No 99
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=25.75 E-value=81 Score=21.16 Aligned_cols=30 Identities=13% Similarity=0.437 Sum_probs=23.9
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh----Cccchhh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY----HPESSSQ 39 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y----HPEsse~ 39 (67)
..+.+++.+|++|..+++-|.+| ||+....
T Consensus 185 ~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~R 218 (266)
T 3kmr_A 185 QDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHM 218 (266)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcccH
Confidence 35788999999999999999887 6765443
No 100
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=25.62 E-value=58 Score=20.43 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhcc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMG 43 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G 43 (67)
.+...++|| |++|-..|+++.|....++
T Consensus 131 ~~f~~D~~l-i~~Na~~yN~~~s~~~~~A 158 (174)
T 2ri7_A 131 TEFVADMTK-IFDNCRYYNPSDSPFYQCA 158 (174)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 466778886 6778888888776655544
No 101
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=25.30 E-value=42 Score=20.03 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMGV 44 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G~ 44 (67)
.+...++|| |++|-..|+++.|....++.
T Consensus 75 ~~f~~D~~l-i~~Na~~yN~~~s~~~~~A~ 103 (116)
T 3nxb_A 75 EEFVNDMKT-MFRNCRKYNGESSEYTKMSD 103 (116)
T ss_dssp HHHHHHHHH-HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHHH
Confidence 456677776 56777788888776655543
No 102
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=25.28 E-value=38 Score=23.56 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=17.5
Q ss_pred CCCCccCCHHHHHHHHHHHHHH
Q 035343 7 DTGRKVDDPEVLEAIRLIVINN 28 (67)
Q Consensus 7 ~Tg~KV~~~e~LE~IRlTIiNN 28 (67)
..-|+=+++|.+|+||-+|+|-
T Consensus 15 ~~~R~GDk~EEv~~Ir~~I~na 36 (156)
T 3brc_A 15 EDRRRGDRSEEVEAIRKYIRSA 36 (156)
T ss_dssp TTCCCSCCHHHHHHHHHHHHHC
T ss_pred hCcccCCcHHHHHHHHHHHhcC
Confidence 3456778899999999998763
No 103
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=25.26 E-value=61 Score=19.75 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMGV 44 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G~ 44 (67)
.+...++|+ |.+|-..|+++.+....++.
T Consensus 72 ~~f~~D~~l-i~~Na~~yN~~~s~~~~~A~ 100 (123)
T 3hme_A 72 TEFKADFKL-MCDNAMTYNRPDTVYYKLAK 100 (123)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHHH
Confidence 455667776 57888889888776655543
No 104
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=25.16 E-value=60 Score=20.15 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhcc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMG 43 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G 43 (67)
.+...++|| |++|-..|+++.|....++
T Consensus 82 ~ef~~Dv~L-if~Na~~yN~~~s~i~~~A 109 (130)
T 3k2j_A 82 DHLECDLNL-MFENAKRYNVPNSAIYKRV 109 (130)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 455667776 6788888888877665544
No 105
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=25.13 E-value=56 Score=20.28 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMGV 44 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G~ 44 (67)
.+.+.++|| |++|-..|+++.+..-.++.
T Consensus 80 ~ef~~Dv~L-if~Na~~yN~~~s~i~~~A~ 108 (135)
T 2yyn_A 80 EDFVADFRL-IFQNCAEFNEPDSEVANAGI 108 (135)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHHH
Confidence 466778886 57777888887766555443
No 106
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=24.48 E-value=59 Score=20.05 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMGV 44 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G~ 44 (67)
.+...++|| |++|-..|+++.+....++.
T Consensus 86 ~ef~~Dv~l-i~~Na~~yN~~~s~i~~~A~ 114 (130)
T 2ouo_A 86 QEFGADVRL-MFSNCYKYNPPDHEVVAMAR 114 (130)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHcCCCCHHHHHHH
Confidence 456777877 56778888887776555543
No 107
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=24.29 E-value=15 Score=28.66 Aligned_cols=9 Identities=56% Similarity=0.903 Sum_probs=7.6
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|||||+..
T Consensus 512 VQFHPE~~~ 520 (545)
T 1s1m_A 512 CQFHPEFTS 520 (545)
T ss_dssp ESSCGGGTC
T ss_pred EeCCCCCCC
Confidence 799999854
No 108
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=24.29 E-value=14 Score=23.60 Aligned_cols=9 Identities=33% Similarity=0.766 Sum_probs=7.3
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||.+.
T Consensus 187 vQfHPE~~~ 195 (208)
T 2iss_D 187 CTFHPELTD 195 (208)
T ss_dssp ESSCGGGSS
T ss_pred EEeCCCcCC
Confidence 699999864
No 109
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=24.28 E-value=23 Score=20.94 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhCccc
Q 035343 16 EVLEAIRLIVINNLLQYHPES 36 (67)
Q Consensus 16 e~LE~IRlTIiNNll~yHPEs 36 (67)
+..++||..--.=.++|||.-
T Consensus 28 as~~eIKkaYrkla~~~HPDk 48 (88)
T 1iur_A 28 LPESERKKIIRRLYLKWHPDK 48 (88)
T ss_dssp SCSHHHHHHHHHHHHHTCTTT
T ss_pred CCHHHHHHHHHHHHHHHCCCC
Confidence 345788888888899999985
No 110
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=23.91 E-value=94 Score=20.49 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.1
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY 32 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y 32 (67)
.-+.+++.+|.+|..+++-|.+|
T Consensus 189 ~gL~~~~~v~~lq~~~~~aL~~y 211 (271)
T 1ovl_A 189 HGLKEPKRVEELQNKIVNCLKDH 211 (271)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999887
No 111
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=23.80 E-value=92 Score=21.06 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=23.4
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh----Cccchh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY----HPESSS 38 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y----HPEsse 38 (67)
..+.+++.+|.+|..++.-|.+| ||+...
T Consensus 191 ~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~ 223 (269)
T 3u9q_A 191 PGLLNVKPIEDIQDNLLQALELQLKLNHPESSQ 223 (269)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 35788999999999999998877 776543
No 112
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=23.43 E-value=63 Score=20.15 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhcc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMG 43 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G 43 (67)
.+...++|| |.+|-..|+++.+....++
T Consensus 90 ~ef~~D~~l-i~~Na~~yN~~~s~i~~~A 117 (150)
T 3tlp_A 90 EGMIEDMKL-MFRNARHYNEEGSQVYNDA 117 (150)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 456677776 5788888888876655544
No 113
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=23.43 E-value=15 Score=23.73 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=8.9
Q ss_pred HHH--HhhCccchh
Q 035343 27 NNL--LQYHPESSS 38 (67)
Q Consensus 27 NNl--l~yHPEsse 38 (67)
.|+ +|+|||.+.
T Consensus 184 ~~i~GvQfHPE~~~ 197 (219)
T 1q7r_A 184 GQFLGCSFHPELTD 197 (219)
T ss_dssp TTEEEESSCGGGSS
T ss_pred CCEEEEEECcccCC
Confidence 455 799999863
No 114
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=23.35 E-value=97 Score=20.64 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=23.3
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh----Cccchh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY----HPESSS 38 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y----HPEsse 38 (67)
..+.+++.+|.+|..++.-|.+| ||+...
T Consensus 187 ~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~ 219 (267)
T 3ilz_A 187 SGLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPH 219 (267)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHHHHHHHTCSSTT
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 35788999999999999998876 675433
No 115
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=23.03 E-value=44 Score=20.79 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhCccc
Q 035343 13 DDPEVLEAIRLIVINNLLQYHPES 36 (67)
Q Consensus 13 ~~~e~LE~IRlTIiNNll~yHPEs 36 (67)
......++||..--.=.++|||.-
T Consensus 19 ~~~a~~~eIk~aYr~l~~~~HPDk 42 (155)
T 2l6l_A 19 DPSANISDLKQKYQKLILMYHPDK 42 (155)
T ss_dssp CTTCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCC
Confidence 334457899999999999999975
No 116
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=22.49 E-value=28 Score=21.15 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhCccc
Q 035343 15 PEVLEAIRLIVINNLLQYHPES 36 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEs 36 (67)
...-++|+.+--.=.++|||.-
T Consensus 44 ~as~~eIKkAYRklal~~HPDK 65 (92)
T 2qwo_B 44 LVTPEQVKKVYRKAVLVVHPCK 65 (92)
T ss_dssp SSSHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHCcCC
Confidence 3446789988888999999974
No 117
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=22.44 E-value=89 Score=20.53 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.4
Q ss_pred ccCCHHHHHHHHHHHHHHHHhh
Q 035343 11 KVDDPEVLEAIRLIVINNLLQY 32 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~y 32 (67)
.+.+++.+|.+|..+..-|.+|
T Consensus 166 gL~~~~~ve~lq~~~~~aL~~y 187 (248)
T 3k6p_A 166 HIEDAEAVEQLREALHEALLEY 187 (248)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999998876
No 118
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=22.39 E-value=83 Score=20.69 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=22.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHhh----Cccchhh
Q 035343 11 KVDDPEVLEAIRLIVINNLLQY----HPESSSQ 39 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~y----HPEsse~ 39 (67)
.+.+++.+|.+|..++.-|.+| ||+....
T Consensus 160 gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~R 192 (249)
T 3p0u_A 160 GLTSTSQIEKFQEAAQMELQDYVQATYSEDTYR 192 (249)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHHHHHTTTCSTH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4678899999999999998876 6754443
No 119
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=22.29 E-value=1.1e+02 Score=20.27 Aligned_cols=30 Identities=20% Similarity=0.478 Sum_probs=23.2
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh----Cccchhh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY----HPESSSQ 39 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y----HPEsse~ 39 (67)
..+.+++.+|.+|..+++-|.+| ||+....
T Consensus 178 ~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~R 211 (257)
T 3plz_A 178 KNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEK 211 (257)
T ss_dssp CSCTTHHHHHHHHHHHHHHHHHHHHHHCTTSTTH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhCCCchhH
Confidence 35778899999999999998875 6754433
No 120
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.27 E-value=70 Score=19.46 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhcc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMG 43 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G 43 (67)
.+...++|| |++|-..|+++.+....++
T Consensus 66 ~ef~~D~~l-i~~Na~~yN~~~s~~~~~A 93 (121)
T 2d9e_A 66 DDFEEDFNL-IVSNCLKYNAKDTIFYRAA 93 (121)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 456677776 5677788888766554443
No 121
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=22.22 E-value=25 Score=24.55 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=16.5
Q ss_pred HHHHHhhCccchhhhhccccc
Q 035343 26 INNLLQYHPESSSQLAMGVTF 46 (67)
Q Consensus 26 iNNll~yHPEsse~la~G~~f 46 (67)
|||+|+.||...++|..=+.|
T Consensus 19 ~~~~l~~H~STReRLp~ld~f 39 (200)
T 3fzg_A 19 IEDLLKIHSSTNERVATLNDF 39 (200)
T ss_dssp HHHHHHHSHHHHTTGGGHHHH
T ss_pred HHHHHhhCCCHHHHhHhHHHH
Confidence 689999999999998543333
No 122
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=22.13 E-value=1.2e+02 Score=19.98 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=22.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHhh----Cccchh
Q 035343 11 KVDDPEVLEAIRLIVINNLLQY----HPESSS 38 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~y----HPEsse 38 (67)
.+.+++.+|.+|..++.-|.+| ||+...
T Consensus 179 gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~ 210 (264)
T 1g2n_A 179 GLKNRQEVEVLREKMFLCLDEYCRRSRSSEEG 210 (264)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTT
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhCCCHhh
Confidence 4678899999999999998876 565433
No 123
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=22.09 E-value=75 Score=19.51 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343 14 DPEVLEAIRLIVINNLLQYHPESSSQLAMGV 44 (67)
Q Consensus 14 ~~e~LE~IRlTIiNNll~yHPEsse~la~G~ 44 (67)
-.+...++|| |++|-..|+++.|....++.
T Consensus 81 ~~ef~~D~~l-i~~Na~~yN~~~s~i~~~A~ 110 (127)
T 2oss_A 81 AQECIQDFNT-MFTNCYIYNKPGDDIVLMAE 110 (127)
T ss_dssp HHHHHHHHHH-HHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHCCCCCHHHHHHH
Confidence 3567778886 57778888887766555543
No 124
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=22.00 E-value=47 Score=24.11 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=19.0
Q ss_pred HHHHHHHHhhCccchhhhhcccc
Q 035343 23 LIVINNLLQYHPESSSQLAMGVT 45 (67)
Q Consensus 23 lTIiNNll~yHPEsse~la~G~~ 45 (67)
.++|.+|++-|||.+..+...++
T Consensus 68 ~sLL~~L~~~HPel~qeI~~~~P 90 (245)
T 3q5w_A 68 FTILLQCVEKHPDLARDIRGILP 90 (245)
T ss_dssp HHHHHHHHHHCTHHHHHHHTTSC
T ss_pred HHHHHHHHHhCchHHHHHhhcCC
Confidence 46788999999999998877653
No 125
>1l4d_B Streptokinase; plasminogen, protein complex, hydrolase/hydrolase activator complex; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1
Probab=21.87 E-value=29 Score=23.33 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.1
Q ss_pred CccCCHHHHHHHHHHHHHHHH
Q 035343 10 RKVDDPEVLEAIRLIVINNLL 30 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll 30 (67)
.|++|-++|.+|+-.++-|..
T Consensus 47 ~kl~KadLLkAIq~q~~~~~h 67 (122)
T 1l4d_B 47 HKLEKADLLKAIQEQLIANVH 67 (122)
T ss_dssp SEEEHHHHHHHHHHHHHHSCC
T ss_pred ccccHHHHHHHHHHHHhhhhc
Confidence 489999999999999996543
No 126
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=21.74 E-value=1.2e+02 Score=19.51 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=22.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHhh----Cccchh
Q 035343 11 KVDDPEVLEAIRLIVINNLLQY----HPESSS 38 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~y----HPEsse 38 (67)
.+.+++.+|.+|..++.-|.+| ||+...
T Consensus 157 gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~ 188 (244)
T 3cjw_A 157 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPT 188 (244)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 4678899999999999988876 665433
No 127
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=21.66 E-value=1.2e+02 Score=19.64 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=20.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHhh----Cc
Q 035343 11 KVDDPEVLEAIRLIVINNLLQY----HP 34 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~y----HP 34 (67)
.+.+++.+|.+|..+++-|.+| ||
T Consensus 176 gL~~~~~v~~lq~~~~~aL~~y~~~~~~ 203 (254)
T 3b0t_A 176 GVQDAALIEAIQDRLSNTLQTYIRCRHP 203 (254)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4678999999999999999876 67
No 128
>1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=21.64 E-value=85 Score=18.62 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhCccchhhhhc
Q 035343 18 LEAIRLIVINNLLQYHPESSSQLAM 42 (67)
Q Consensus 18 LE~IRlTIiNNll~yHPEsse~la~ 42 (67)
.+++-..+..+|+.-|||....+..
T Consensus 26 ~~~~g~~~~~~lF~~~P~~k~~F~~ 50 (144)
T 1yhu_B 26 REEFGHFIWSHVFQHSPAARDMFKR 50 (144)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGGGGG
T ss_pred HHHHHHHHHHHHHHHChHHHHhccc
Confidence 6778889999999999999998875
No 129
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=21.49 E-value=74 Score=19.51 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhcc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMG 43 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G 43 (67)
.+...++|| |++|-..|+++.|....++
T Consensus 77 ~~f~~Dv~L-i~~Na~~yN~~~s~i~~~A 104 (129)
T 2grc_A 77 NDLEKDVML-LCQNAQTFNLEGSLIYEDS 104 (129)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 456677876 5778888888877655544
No 130
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=21.44 E-value=74 Score=19.46 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhhcc
Q 035343 15 PEVLEAIRLIVINNLLQYHPESSSQLAMG 43 (67)
Q Consensus 15 ~e~LE~IRlTIiNNll~yHPEsse~la~G 43 (67)
.+...++|| |++|-..|+++.+..-.++
T Consensus 72 ~~f~~D~~l-i~~Na~~yN~~~s~~~~~A 99 (135)
T 3rcw_A 72 HEFEEDFDL-IIDNCMKYNARDTVFYRAA 99 (135)
T ss_dssp HHHHHHHHH-HHHHHHHHSCTTSHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 355666776 5778888888776654443
No 131
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=21.35 E-value=8.7 Score=25.84 Aligned_cols=13 Identities=8% Similarity=-0.248 Sum_probs=10.2
Q ss_pred Cccccceeeeccc
Q 035343 51 PKQQVFAFWSYFN 63 (67)
Q Consensus 51 p~k~vd~~~~~~~ 63 (67)
.....++||.||+
T Consensus 7 ~e~v~~~~w~Y~~ 19 (216)
T 2lem_A 7 WDKVKDFANVYVD 19 (216)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3457889999986
No 132
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=21.27 E-value=69 Score=21.30 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.7
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY 32 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y 32 (67)
+.+.+++.+|++|..++.-|.+|
T Consensus 161 ~gL~~~~~ve~lq~~~~~aL~~y 183 (261)
T 1sqn_A 161 EGLRSQTQFEEMRSSYIRELIKA 183 (261)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999876
No 133
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=21.26 E-value=80 Score=19.32 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHHHhhCcc-chhhhhcc
Q 035343 14 DPEVLEAIRLIVINNLLQYHPE-SSSQLAMG 43 (67)
Q Consensus 14 ~~e~LE~IRlTIiNNll~yHPE-sse~la~G 43 (67)
-.+...++|| |++|-..|+++ .+....++
T Consensus 79 ~~~f~~D~~l-i~~Na~~yN~~~~s~i~~~A 108 (135)
T 3mb3_A 79 PMELCKDVRL-IFSNSKAYTPSKRSRIYSMS 108 (135)
T ss_dssp HHHHHHHHHH-HHHHHHHHSCCTTCHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHCCCCCCHHHHHH
Confidence 3456677776 57788888876 55554443
No 134
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=21.21 E-value=85 Score=21.40 Aligned_cols=29 Identities=14% Similarity=0.429 Sum_probs=23.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHhh----Cccchhh
Q 035343 11 KVDDPEVLEAIRLIVINNLLQY----HPESSSQ 39 (67)
Q Consensus 11 KV~~~e~LE~IRlTIiNNll~y----HPEsse~ 39 (67)
.+.+++.+|.+|..++.-|.+| ||+....
T Consensus 189 gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~R 221 (303)
T 1xdk_B 189 DLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHM 221 (303)
T ss_dssp SCSSHHHHHHHTHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhCCCcccH
Confidence 4678999999999999999877 7764433
No 135
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=21.18 E-value=65 Score=20.36 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=19.9
Q ss_pred CCccCCHHHHHHHHHHH-----HHHHHhhCccchhhhhccc
Q 035343 9 GRKVDDPEVLEAIRLIV-----INNLLQYHPESSSQLAMGV 44 (67)
Q Consensus 9 g~KV~~~e~LE~IRlTI-----iNNll~yHPEsse~la~G~ 44 (67)
++|..|- |-+|+.| +..+|+-+|..+..++.|.
T Consensus 57 ~kKLSKI---ETLRlAi~YI~~Lq~~L~~~~~~~~~~~~g~ 94 (97)
T 4aya_A 57 NKKVSKM---EILQHVIDYILDLQIALDSHLKPSFLVQSGD 94 (97)
T ss_dssp SSCCCHH---HHHHHHHHHHHHHHHHHHTTTSTTCC-----
T ss_pred CCcccHH---HHHHHHHHHHHHHHHHHhcCCCCcchhhcCc
Confidence 4566554 4555554 6789999999998888775
No 136
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=20.80 E-value=70 Score=17.77 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=20.2
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCcc
Q 035343 12 VDDPEVLEAIRLIVINNLLQYHPE 35 (67)
Q Consensus 12 V~~~e~LE~IRlTIiNNll~yHPE 35 (67)
..|+..|..|=.-+|.|-++|-|+
T Consensus 42 ~~d~~~l~~il~nll~NAi~~~~~ 65 (152)
T 3a0y_A 42 EADRTRIKQVLINLVQNAIEATGE 65 (152)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHCT
T ss_pred EECHHHHHHHHHHHHHHHHHhcCC
Confidence 357889999999999999999764
No 137
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=20.37 E-value=19 Score=28.51 Aligned_cols=9 Identities=44% Similarity=0.781 Sum_probs=7.4
Q ss_pred HhhCccchh
Q 035343 30 LQYHPESSS 38 (67)
Q Consensus 30 l~yHPEsse 38 (67)
+|+|||++.
T Consensus 191 vQFHPE~~~ 199 (697)
T 2vxo_A 191 AQFHPEVGL 199 (697)
T ss_dssp ESSCTTSSS
T ss_pred EEecccCCC
Confidence 699999863
No 138
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=20.24 E-value=1.2e+02 Score=20.33 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=23.0
Q ss_pred CccCCHHHHHHHHHHHHHHHHhh----Cccchh
Q 035343 10 RKVDDPEVLEAIRLIVINNLLQY----HPESSS 38 (67)
Q Consensus 10 ~KV~~~e~LE~IRlTIiNNll~y----HPEsse 38 (67)
..+.+++.+|.+|..++.-|.+| ||+...
T Consensus 206 ~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~ 238 (283)
T 3ipq_A 206 PNVQDQLQVERLQHTYVEALHAYVSIHHPHDRL 238 (283)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 35778899999999999998876 675543
Done!