BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035344
         (67 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Q53|A Chain A, Solution Structure Of Hypothetical Arabidopsis Thaliana
           Protein At3g17210. Center For Eukaryotic Structural
           Genomics Target 13081
 pdb|1Q53|B Chain B, Solution Structure Of Hypothetical Arabidopsis Thaliana
           Protein At3g17210. Center For Eukaryotic Structural
           Genomics Target 13081
          Length = 112

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 57/62 (91%)

Query: 6   GKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKPTTV 65
           GK+VSIENLHQG+THIFESTFES E VAEY+AHPAHVE+A +FL +L+KVLVIDYKPT+V
Sbjct: 51  GKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSV 110

Query: 66  RV 67
            +
Sbjct: 111 SL 112


>pdb|1Q4R|A Chain A, Gene Product Of At3g17210 From Arabidopsis Thaliana
 pdb|2Q3P|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           At3g17210 From Arabidopsis Thaliana
          Length = 112

 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 57/62 (91%)

Query: 6   GKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKPTTV 65
           GK+VSIENLHQG+THIFESTFES E VAEY+AHPAHVE+A +FL +L+KVLVIDYKPT+V
Sbjct: 51  GKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSV 110

Query: 66  RV 67
            +
Sbjct: 111 SL 112


>pdb|1SI9|A Chain A, Boiling Stable Protein Isolated From Populus Tremula
 pdb|1SI9|B Chain B, Boiling Stable Protein Isolated From Populus Tremula
 pdb|1SI9|C Chain C, Boiling Stable Protein Isolated From Populus Tremula
 pdb|1TR0|A Chain A, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|B Chain B, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|C Chain C, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|D Chain D, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|E Chain E, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|F Chain F, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|G Chain G, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|H Chain H, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|I Chain I, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|J Chain J, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|K Chain K, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|L Chain L, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|M Chain M, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|N Chain N, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|O Chain O, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|P Chain P, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|R Chain R, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|S Chain S, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|T Chain T, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|U Chain U, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|V Chain V, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|W Chain W, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|X Chain X, Crystal Structure Of A Boiling Stable Protein Sp1
 pdb|1TR0|Y Chain Y, Crystal Structure Of A Boiling Stable Protein Sp1
          Length = 108

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 4   NRGKNVSIEN--LHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDY 60
           N G ++ +E+  L++G+TH FESTFES  G+ EY+   A   +A  FL  L + LVIDY
Sbjct: 47  NWGTDLGMESAELNRGYTHAFESTFESKSGLQEYLDSAALAAFAEGFLPTLSQRLVIDY 105


>pdb|1RJJ|A Chain A, Solution Structure Of A Homodimeric Hypothetical Protein,
           At5g22580, A Structural Genomics Target From Arabidopsis
           Thaliana
 pdb|1RJJ|B Chain B, Solution Structure Of A Homodimeric Hypothetical Protein,
           At5g22580, A Structural Genomics Target From Arabidopsis
           Thaliana
          Length = 111

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 12  ENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKPTTVR 66
           + L QGFTH F  TFE+ +G   + +HP HVE++  F A ++K++++D+    V+
Sbjct: 50  DMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVK 104


>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Cysteine
           Sulfamoyl Adenylate
 pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus
 pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Proline
           Sulfamoyl Adenylate
 pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Alanine
           Sulfamoyl Adenylate
          Length = 501

 Score = 29.3 bits (64), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 10  SIENLHQGFTHIFESTFESTEGVAEYV 36
           ++ NL Q F   FE  FE+ EG  EYV
Sbjct: 255 TVHNLGQTFARTFEIKFETPEGDHEYV 281


>pdb|3V7P|A Chain A, Crystal Structure Of Amidohydrolase Nis_0429 (Target
           Efi-500396) From Nitratiruptor Sp. Sb155-2
          Length = 427

 Score = 28.5 bits (62), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 12  ENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLAN----LEKVLVIDYKPTT 64
           + LH  F H+  +  E  + +A Y AH  H   +N  L N    LEK+  I Y   T
Sbjct: 249 KELHTLFVHMVWANEEEIQTIASYNAHIIHCPISNRLLGNGVLDLEKIKSIPYAIAT 305


>pdb|2QYC|A Chain A, Crystal Structure Of A Dimeric Ferredoxin-Like Protein
          (Bb1511) From Bordetella Bronchiseptica Rb50 At 1.90 A
          Resolution
 pdb|2QYC|B Chain B, Crystal Structure Of A Dimeric Ferredoxin-Like Protein
          (Bb1511) From Bordetella Bronchiseptica Rb50 At 1.90 A
          Resolution
          Length = 103

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 6  GKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVID 59
          G+NV+  +  QG+TH   S F        Y   PAHV         +++V+V D
Sbjct: 45 GENVAARS--QGYTHATSSAFVDAAAHDAYQVCPAHVAXKAFXGPRIKRVVVYD 96


>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
 pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
 pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In
          Complex With Cacodylate
 pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In
          Complex With Cacodylate
 pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex
          With O- Phosphotyrosine
 pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
          Protein
          Length = 187

 Score = 25.8 bits (55), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 28 STEGVAEYVAHPAHVEYANLFLANLEKVLV---IDYKPTTV 65
          S + V E   HP HV YA   +  L KVL    +  +PT++
Sbjct: 13 SLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSI 53


>pdb|3IJP|A Chain A, Crystal Structure Of Dihydrodipicolinate Reductase From
           Bartonella Henselae At 2.0a Resolution
 pdb|3IJP|B Chain B, Crystal Structure Of Dihydrodipicolinate Reductase From
           Bartonella Henselae At 2.0a Resolution
          Length = 288

 Score = 25.8 bits (55), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 23  ESTFESTEGVAEYVAHPAHVEYAN 46
           ES F +TEG+ ++    A V YAN
Sbjct: 83  ESAFSNTEGILDFSQPQASVLYAN 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,981,380
Number of Sequences: 62578
Number of extensions: 62851
Number of successful extensions: 149
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 10
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)