Query 035344
Match_columns 67
No_of_seqs 132 out of 759
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 11:06:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07876 Dabb: Stress responsi 99.8 1.1E-20 2.5E-25 108.8 8.0 61 2-62 37-97 (97)
2 PF07045 DUF1330: Protein of u 95.7 0.031 6.7E-07 30.1 4.2 31 15-45 35-65 (65)
3 PF03992 ABM: Antibiotic biosy 94.7 0.11 2.3E-06 27.6 4.4 29 18-46 49-77 (78)
4 COG5470 Uncharacterized conser 93.0 0.38 8.2E-06 28.5 4.8 41 19-59 53-94 (96)
5 PF13826 DUF4188: Domain of un 90.1 1 2.2E-05 27.4 4.6 34 18-51 51-84 (117)
6 PF07110 EthD: EthD domain; I 89.4 1.3 2.8E-05 24.3 4.5 37 14-50 53-90 (95)
7 COG3224 Uncharacterized protei 86.8 2.2 4.7E-05 28.2 4.8 46 13-58 53-98 (195)
8 COG1359 Uncharacterized conser 83.0 5.1 0.00011 23.0 4.8 38 17-54 49-86 (100)
9 TIGR02118 conserved hypothetic 79.1 9.5 0.00021 21.7 7.5 39 16-54 50-88 (100)
10 PF01037 AsnC_trans_reg: AsnC 76.8 4.7 0.0001 21.1 3.1 23 14-36 31-53 (74)
11 PRK13314 heme-degrading monoox 74.4 16 0.00034 21.8 5.5 49 17-66 48-100 (107)
12 COG2329 Uncharacterized enzyme 73.9 9 0.00019 22.4 4.0 35 17-51 49-84 (105)
13 PF13816 Dehydratase_hem: Haem 65.1 15 0.00032 25.7 4.2 26 24-49 245-271 (310)
14 PRK10486 autoinducer-2 (AI-2) 64.4 24 0.00052 19.9 5.9 40 17-56 47-86 (96)
15 PHA00650 hypothetical protein 62.2 8.3 0.00018 21.5 2.1 28 26-53 6-33 (82)
16 PF14114 DUF4286: Domain of un 59.2 32 0.0007 19.7 6.3 29 15-43 48-78 (98)
17 PRK13315 heme-degrading monoox 57.0 36 0.00079 20.2 4.4 32 16-47 46-78 (107)
18 PRK13312 heme-degrading monoox 48.7 55 0.0012 19.5 4.2 30 17-46 48-78 (107)
19 PRK13313 heme-degrading monoox 48.4 51 0.0011 19.7 4.1 31 16-46 46-77 (108)
20 PRK06524 biotin carboxylase-li 47.1 13 0.00029 27.7 1.7 27 24-50 78-105 (493)
21 PF09128 RGS-like: Regulator o 42.9 17 0.00038 23.7 1.6 24 26-52 5-29 (188)
22 PHA02085 hypothetical protein 41.8 41 0.00089 19.3 2.8 27 23-49 2-29 (87)
23 PRK11179 DNA-binding transcrip 40.5 43 0.00093 20.4 3.0 24 14-37 102-125 (153)
24 PRK13316 heme-degrading monoox 40.3 87 0.0019 19.1 5.1 31 16-46 54-85 (121)
25 PHA02087 hypothetical protein 39.9 59 0.0013 18.3 3.2 26 21-46 3-28 (83)
26 PRK11169 leucine-responsive tr 32.9 65 0.0014 19.9 3.0 23 14-36 109-131 (164)
27 PF10927 DUF2738: Protein of u 31.6 52 0.0011 22.4 2.5 24 1-24 43-67 (244)
28 PF14112 DUF4284: Domain of un 30.2 51 0.0011 19.7 2.1 18 20-37 3-20 (122)
29 PF11695 DUF3291: Domain of un 29.5 1.5E+02 0.0032 18.5 4.2 35 19-53 60-94 (140)
30 COG3403 Uncharacterized conser 26.6 1.5E+02 0.0033 20.4 4.0 36 14-51 83-118 (257)
31 TIGR00125 cyt_tran_rel cytidyl 26.0 1E+02 0.0022 15.5 2.8 18 37-54 11-28 (66)
32 PF08734 GYD: GYD domain; Int 25.3 93 0.002 17.6 2.5 19 16-34 44-62 (91)
33 PRK12866 YciI-like protein; Re 23.7 1.2E+02 0.0026 17.3 2.8 24 20-43 50-74 (97)
34 PF04431 Pec_lyase_N: Pectate 23.2 53 0.0012 17.4 1.1 14 29-42 18-31 (56)
35 PF07978 NIPSNAP: NIPSNAP ; I 22.5 1.5E+02 0.0032 16.2 4.2 34 18-51 47-84 (102)
36 PRK11118 putative monooxygenas 22.4 1.5E+02 0.0033 17.6 3.1 18 24-43 54-71 (100)
37 PRK11370 YciI-like protein; Re 21.7 1.4E+02 0.003 16.9 2.8 23 21-43 60-83 (99)
38 PF08803 ydhR: Putative mono-o 21.2 64 0.0014 19.0 1.3 19 20-38 47-65 (97)
39 PF02526 GBP_repeat: Glycophor 20.8 1.2E+02 0.0027 14.6 2.5 19 31-49 9-27 (38)
No 1
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=99.84 E-value=1.1e-20 Score=108.80 Aligned_cols=61 Identities=36% Similarity=0.637 Sum_probs=56.8
Q ss_pred eeeecccCCccccCCceeEEEEEEECCHHhHHhhhcChhHHHHHHHHhhhhcceEEEEeec
Q 035344 2 CCNRGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKP 62 (67)
Q Consensus 2 ~~~~G~n~s~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~Df~~ 62 (67)
.+++|+|+++++.++|||++++++|+|.+++++|+.||+|+++++.++|++++++++||++
T Consensus 37 ~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~~hp~H~~~~~~~~p~~~~~~~~D~~V 97 (97)
T PF07876_consen 37 SFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQTHPAHQAFVEFLKPILEDRIVFDFEV 97 (97)
T ss_dssp EEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHHTSHHHHHHHHHHHGGEEEEEEEEEEE
T ss_pred EEEEEcccCcccccCCCcEEEEEEECCHHHHHHHHcCHHHHHHHHHHHHHhCceEEEEEEC
Confidence 5789999998766799999999999999999999999999999999999999999999985
No 2
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=95.71 E-value=0.031 Score=30.13 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=27.4
Q ss_pred CCceeEEEEEEECCHHhHHhhhcChhHHHHH
Q 035344 15 HQGFTHIFESTFESTEGVAEYVAHPAHVEYA 45 (67)
Q Consensus 15 ~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~ 45 (67)
...++.+++++|.|.++..++-.+|+.|+++
T Consensus 35 ~~~~~~~viieFPs~~aa~~~~~speYq~~~ 65 (65)
T PF07045_consen 35 DWDPDRVVIIEFPSMEAAKAWYNSPEYQALK 65 (65)
T ss_dssp T-SSSEEEEEEESSHHHHHHHHCSHHHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHCCHhHHhhC
Confidence 3567999999999999999999999999864
No 3
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=94.70 E-value=0.11 Score=27.55 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=26.3
Q ss_pred eeEEEEEEECCHHhHHhhhcChhHHHHHH
Q 035344 18 FTHIFESTFESTEGVAEYVAHPAHVEYAN 46 (67)
Q Consensus 18 y~~~l~~~F~s~e~l~~Y~~hP~H~~~~~ 46 (67)
=.+.++..++|.++++++..+|.|+++.+
T Consensus 49 ~~~~~~~~W~s~~a~~~~~~s~~~~~~~~ 77 (78)
T PF03992_consen 49 NRYVIVERWESEEAFQAHFKSPEFKAFQE 77 (78)
T ss_dssp TEEEEEEEESSHHHHHHHHTSHHHHHHHH
T ss_pred CEEEEEEEECCHHHHHHHHcCHHHHHHHh
Confidence 34999999999999999999999999865
No 4
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=0.38 Score=28.46 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=32.5
Q ss_pred eEEEEEEECCHHhHHhhhcChhHHHHHHHH-hhhhcceEEEE
Q 035344 19 THIFESTFESTEGVAEYVAHPAHVEYANLF-LANLEKVLVID 59 (67)
Q Consensus 19 ~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~-~~~~~~~~v~D 59 (67)
+-.++++|+|.++...+-..|+.|++.+.- ...-...+++|
T Consensus 53 tr~vviEFps~~~ar~~y~SpeYq~a~~~Rq~~ad~~~iiVe 94 (96)
T COG5470 53 TRNVVIEFPSLEAARDCYNSPEYQAAAAIRQAAADSEIIIVE 94 (96)
T ss_pred ccEEEEEcCCHHHHHHHhcCHHHHHHHHHHhhcccccEEEEe
Confidence 578999999999999999999999988743 33334566665
No 5
>PF13826 DUF4188: Domain of unknown function (DUF4188)
Probab=90.09 E-value=1 Score=27.39 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=28.7
Q ss_pred eeEEEEEEECCHHhHHhhhcChhHHHHHHHHhhh
Q 035344 18 FTHIFESTFESTEGVAEYVAHPAHVEYANLFLAN 51 (67)
Q Consensus 18 y~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~ 51 (67)
=+.+++.-|.|.|+|.+|..+|.|....+.+...
T Consensus 51 ~~~~~v~YwRs~e~L~~fA~~~~H~~aW~~fn~~ 84 (117)
T PF13826_consen 51 RTIMLVQYWRSFEDLHRFAHDPPHRPAWRWFNKR 84 (117)
T ss_pred CceEEEEEECCHHHHHHHHCCChHHHHHHHHHHH
Confidence 4578899999999999999999999887755433
No 6
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=89.44 E-value=1.3 Score=24.34 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=29.7
Q ss_pred cCCceeEEEEEEECCHHhHHhhhcChhHHH-HHHHHhh
Q 035344 14 LHQGFTHIFESTFESTEGVAEYVAHPAHVE-YANLFLA 50 (67)
Q Consensus 14 ~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~-~~~~~~~ 50 (67)
....||-+..+.|+|.+++.+...+|..++ +.+-...
T Consensus 53 ~~~~~Dgi~e~~f~~~e~~~~~~~~p~~~~~l~~De~~ 90 (95)
T PF07110_consen 53 DPPDYDGIAELWFDSLEALQAAFADPEYQAALRADEAN 90 (95)
T ss_dssp C--SEEEEEEEEECCHHHHHHHHCSHHCHHHHHHHHHH
T ss_pred CCCCEeEEEEEEECCHHHHHHHHCCHHHHHHHhccHHH
Confidence 346799999999999999999999999988 5544433
No 7
>COG3224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.80 E-value=2.2 Score=28.16 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=38.3
Q ss_pred ccCCceeEEEEEEECCHHhHHhhhcChhHHHHHHHHhhhhcceEEE
Q 035344 13 NLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVI 58 (67)
Q Consensus 13 ~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~ 58 (67)
+.+..+.+..+..||+.|.+.+..+.|.-++.++.-..+.+.....
T Consensus 53 ~~G~~~e~~~ifRFD~~enl~aW~~SpeR~~wl~~~e~~~ee~~~~ 98 (195)
T COG3224 53 QAGDRFEYETIFRFDNLENLAAWIHSPERRAWLERGENLVEEFVGK 98 (195)
T ss_pred CCCCceeEEEEEEecCHHHHHHhhcCHHHHHHHHHhhccccccchh
Confidence 4556789999999999999999999999999988777776654443
No 8
>COG1359 Uncharacterized conserved protein [Function unknown]
Probab=83.00 E-value=5.1 Score=22.95 Aligned_cols=38 Identities=8% Similarity=0.117 Sum_probs=34.2
Q ss_pred ceeEEEEEEECCHHhHHhhhcChhHHHHHHHHhhhhcc
Q 035344 17 GFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 54 (67)
Q Consensus 17 gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 54 (67)
.=.+.++=.+.|.++++....-|.-+++.+.+.+++.+
T Consensus 49 ~~~~~~~E~w~d~~A~~~H~~s~h~~~~~~~~~~l~~~ 86 (100)
T COG1359 49 PGRFVLIEVWEDEAALDAHLQSPHFQAFVAALPPLLAG 86 (100)
T ss_pred CCEEEEEEEECCHHHHHHHhCCHHHHHHHHhChHhhcC
Confidence 34588889999999999999999999999999999876
No 9
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=79.09 E-value=9.5 Score=21.65 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=32.1
Q ss_pred CceeEEEEEEECCHHhHHhhhcChhHHHHHHHHhhhhcc
Q 035344 16 QGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 54 (67)
Q Consensus 16 ~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 54 (67)
..||-+..+.|+|.+++++-...|.=+++.+-.....+.
T Consensus 50 ~~~d~i~el~Fds~e~~~~a~~sp~~~~~~~D~~nF~d~ 88 (100)
T TIGR02118 50 SPYYGMCELYFDSIEDFQAAFDSPEGKAAAADVANFADG 88 (100)
T ss_pred CCeeEEEEEEECCHHHHHHHHcCHHHHHHHHHHHhhcCC
Confidence 349999999999999999999899888777766655543
No 10
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=76.84 E-value=4.7 Score=21.05 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=20.3
Q ss_pred cCCceeEEEEEEECCHHhHHhhh
Q 035344 14 LHQGFTHIFESTFESTEGVAEYV 36 (67)
Q Consensus 14 ~~~gy~~~l~~~F~s~e~l~~Y~ 36 (67)
.++.||+.+.+.+.|.++++.+.
T Consensus 31 vtG~~d~~~~v~~~d~~~l~~~i 53 (74)
T PF01037_consen 31 VTGEYDLILKVRARDMEELEEFI 53 (74)
T ss_dssp ESSSSSEEEEEEESSHHHHHHHH
T ss_pred EeCCCCEEEEEEECCHHHHHHHH
Confidence 45789999999999999998874
No 11
>PRK13314 heme-degrading monooxygenase IsdG; Provisional
Probab=74.42 E-value=16 Score=21.76 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=33.6
Q ss_pred ceeEEEEEEECCHHhHHhhhcChhHHHHHHH----HhhhhcceEEEEeecceee
Q 035344 17 GFTHIFESTFESTEGVAEYVAHPAHVEYANL----FLANLEKVLVIDYKPTTVR 66 (67)
Q Consensus 17 gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~----~~~~~~~~~v~Df~~~~~~ 66 (67)
.-.+...+..+|+|+++++...++|.+..+. -.|++. ..+.-|++.++|
T Consensus 48 ~~~y~v~T~Wes~eaF~aW~~S~aFr~AH~~~~~~~~~i~~-~~i~~yeV~~~~ 100 (107)
T PRK13314 48 YDEVTISTRWNAKEDFQGWTKSPAFKAAHSHQGGMPDYILD-NKISYYDVKVVR 100 (107)
T ss_pred CceEEEEEEECCHHHHHHHHcCHHHHHHHhccCCCCCcccc-CeeEEEEEEEee
Confidence 3457778999999999999999988876652 223333 445555555544
No 12
>COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]
Probab=73.87 E-value=9 Score=22.41 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=29.1
Q ss_pred cee-EEEEEEECCHHhHHhhhcChhHHHHHHHHhhh
Q 035344 17 GFT-HIFESTFESTEGVAEYVAHPAHVEYANLFLAN 51 (67)
Q Consensus 17 gy~-~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~ 51 (67)
+.+ +++++..+|.++.++...++.|.+..+.-+..
T Consensus 49 ~~~~~~vvt~WeS~eaf~~W~~s~~~~~ah~~~~~~ 84 (105)
T COG2329 49 DPDEYVVVTRWESEEAFKAWRKSDEFKEAHKAGRSN 84 (105)
T ss_pred CCceEEEEEEECCHHHHHhHhcCHHHHHHHHhcccc
Confidence 344 99999999999999999999998877755543
No 13
>PF13816 Dehydratase_hem: Haem-containing dehydratase; PDB: 3A18_C 3A17_F 3A15_C 3A16_D.
Probab=65.15 E-value=15 Score=25.73 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEECCHHhHHhhh-cChhHHHHHHHHh
Q 035344 24 STFESTEGVAEYV-AHPAHVEYANLFL 49 (67)
Q Consensus 24 ~~F~s~e~l~~Y~-~hP~H~~~~~~~~ 49 (67)
.-|.|.++|+... .||.|+++-..+.
T Consensus 245 ~yf~~L~~LE~Wa~~H~tHl~If~~fm 271 (310)
T PF13816_consen 245 GYFRSLSSLERWARSHPTHLAIFRGFM 271 (310)
T ss_dssp EEES-HHHHHHHHHHSHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhcCchHHHHHHHHH
Confidence 5699999999999 6999999776333
No 14
>PRK10486 autoinducer-2 (AI-2) modifying protein LsrG; Provisional
Probab=64.43 E-value=24 Score=19.95 Aligned_cols=40 Identities=8% Similarity=-0.038 Sum_probs=34.8
Q ss_pred ceeEEEEEEECCHHhHHhhhcChhHHHHHHHHhhhhcceE
Q 035344 17 GFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVL 56 (67)
Q Consensus 17 gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~ 56 (67)
.=.+.++=.+.|.++++....-|.-+++.+.+.++++...
T Consensus 47 p~~~~~~E~w~d~~Al~~H~~tph~k~f~~~~~~ll~~~~ 86 (96)
T PRK10486 47 PTRFYIYEAYKDEAAVAFHKTTPHYKTCVEKLEPLMTGPR 86 (96)
T ss_pred CCEEEEEEEeCCHHHHHHHhcCHHHHHHHHHHHHHHhCCc
Confidence 4568899999999999999999999999999999887543
No 15
>PHA00650 hypothetical protein
Probab=62.19 E-value=8.3 Score=21.47 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=24.1
Q ss_pred ECCHHhHHhhhcChhHHHHHHHHhhhhc
Q 035344 26 FESTEGVAEYVAHPAHVEYANLFLANLE 53 (67)
Q Consensus 26 F~s~e~l~~Y~~hP~H~~~~~~~~~~~~ 53 (67)
..+.|+|++-..-|+|-+|..+++..+.
T Consensus 6 intredldalagtpahgefldylrgsit 33 (82)
T PHA00650 6 INTREDLDALAGTPAHGEFLDYLRGSIT 33 (82)
T ss_pred cccHHHHHHhcCCCcchhHHHHHhhhcc
Confidence 4678999999999999999998876654
No 16
>PF14114 DUF4286: Domain of unknown function (DUF4286)
Probab=59.18 E-value=32 Score=19.75 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=24.1
Q ss_pred CCceeEEEEEEECCHHhHHhhhc-C-hhHHH
Q 035344 15 HQGFTHIFESTFESTEGVAEYVA-H-PAHVE 43 (67)
Q Consensus 15 ~~gy~~~l~~~F~s~e~l~~Y~~-h-P~H~~ 43 (67)
..|-++++.-.++|.++|+.|.. | |..++
T Consensus 48 ~~g~tysvQy~~~s~e~l~~y~~~~~~~l~~ 78 (98)
T PF14114_consen 48 EGGKTYSVQYEVESMEDLERYYEEHAPKLRE 78 (98)
T ss_pred CCCeEEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999996 3 55544
No 17
>PRK13315 heme-degrading monooxygenase IsdG; Provisional
Probab=57.00 E-value=36 Score=20.18 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=25.9
Q ss_pred Ccee-EEEEEEECCHHhHHhhhcChhHHHHHHH
Q 035344 16 QGFT-HIFESTFESTEGVAEYVAHPAHVEYANL 47 (67)
Q Consensus 16 ~gy~-~~l~~~F~s~e~l~~Y~~hP~H~~~~~~ 47 (67)
.+++ +...+..+|+|+++++...++|.+..+.
T Consensus 46 ~~~~~~~v~T~Wes~eaF~aW~~S~aF~~AH~~ 78 (107)
T PRK13315 46 DEYDEMYVNMWWETEEDFEAWRNSDAFKEAHKR 78 (107)
T ss_pred CCCceEEEEEEECCHHHHHHHhcCHHHHHHhhc
Confidence 3455 5568999999999999999988877663
No 18
>PRK13312 heme-degrading monooxygenase IsdG; Provisional
Probab=48.65 E-value=55 Score=19.53 Aligned_cols=30 Identities=7% Similarity=0.181 Sum_probs=25.2
Q ss_pred cee-EEEEEEECCHHhHHhhhcChhHHHHHH
Q 035344 17 GFT-HIFESTFESTEGVAEYVAHPAHVEYAN 46 (67)
Q Consensus 17 gy~-~~l~~~F~s~e~l~~Y~~hP~H~~~~~ 46 (67)
++| +...+..+|+|+++++...+++.+..+
T Consensus 48 ~~d~y~v~T~WeseeaFeaW~~SdaFr~AH~ 78 (107)
T PRK13312 48 DFDEVKILTVWKSKQAFTDWLKSDVFKAAHK 78 (107)
T ss_pred CceEEEEEEEECCHHHHHHHhcCHHHHHHHh
Confidence 444 788899999999999999998877665
No 19
>PRK13313 heme-degrading monooxygenase IsdI; Provisional
Probab=48.36 E-value=51 Score=19.67 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=25.6
Q ss_pred Ccee-EEEEEEECCHHhHHhhhcChhHHHHHH
Q 035344 16 QGFT-HIFESTFESTEGVAEYVAHPAHVEYAN 46 (67)
Q Consensus 16 ~gy~-~~l~~~F~s~e~l~~Y~~hP~H~~~~~ 46 (67)
.+|| ++..+..+|.|+++++...+++.+..+
T Consensus 46 ~~~~~~~V~T~Wesee~F~~Wt~SdaF~~AH~ 77 (108)
T PRK13313 46 EDTDEVKILTIWESEDSFNNWLNSDVFKEAHK 77 (108)
T ss_pred CCceEEEEEEEECCHHHHHHHhcCHHHHHHHh
Confidence 3565 677888999999999999998887665
No 20
>PRK06524 biotin carboxylase-like protein; Validated
Probab=47.11 E-value=13 Score=27.65 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=22.6
Q ss_pred EEECCHHhHHhhh-cChhHHHHHHHHhh
Q 035344 24 STFESTEGVAEYV-AHPAHVEYANLFLA 50 (67)
Q Consensus 24 ~~F~s~e~l~~Y~-~hP~H~~~~~~~~~ 50 (67)
-+|+|.||...|. .||+-+++++.-.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (493)
T PRK06524 78 RDFDGMEDVCNYLLRHPETLEFIKRRGP 105 (493)
T ss_pred hhhhhhHHHhhhhhcCHHHHHHHHhhCC
Confidence 5799999999999 59999998885443
No 21
>PF09128 RGS-like: Regulator of G protein signalling-like domain; InterPro: IPR015212 This entry represents a domain consisting of twelve helices that fold into a compact structure that contains the overall structural scaffold observed in other regulator of G protein signalling (RGS) proteins and three additional helical elements that pack closely to it. Helices 1-9 comprise the RGS fold, in which helices 4-7 form a classic antiparallel bundle adjacent to the other helices. Like other RGS structures, helices 7 and 8 span the length of the folded domain and form essentially one continuous helix with a kink in the middle. Helices 10-12 form an apparently stable C-terminal extension of the structural domain, and although other RGS proteins lack this structure, these elements are intimately associated with the rest of the structural framework by hydrophobic interactions. This domain binds to active G-alpha proteins, promoting GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. ; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0005737 cytoplasm; PDB: 3CX6_B 3CX8_B 3CX7_B 1HTJ_F 1SHZ_C 3AB3_D 1IAP_A.
Probab=42.94 E-value=17 Score=23.74 Aligned_cols=24 Identities=33% Similarity=0.611 Sum_probs=15.0
Q ss_pred ECCHHhHHhhhcChhHHH-HHHHHhhhh
Q 035344 26 FESTEGVAEYVAHPAHVE-YANLFLANL 52 (67)
Q Consensus 26 F~s~e~l~~Y~~hP~H~~-~~~~~~~~~ 52 (67)
|.|.+.| ..||+|.+ |+.++....
T Consensus 5 F~sl~~L---k~rPaHlaVFl~yv~sq~ 29 (188)
T PF09128_consen 5 FQSLELL---KSRPAHLAVFLNYVLSQF 29 (188)
T ss_dssp HHSHHHH---HC-HHHHHHHHHHHHHHS
T ss_pred ccCHHHH---hcCcHHHHHHHHHHHhcC
Confidence 4555555 78999986 777665433
No 22
>PHA02085 hypothetical protein
Probab=41.80 E-value=41 Score=19.35 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=23.2
Q ss_pred EEEECCHHhHHhhh-cChhHHHHHHHHh
Q 035344 23 ESTFESTEGVAEYV-AHPAHVEYANLFL 49 (67)
Q Consensus 23 ~~~F~s~e~l~~Y~-~hP~H~~~~~~~~ 49 (67)
.++|+|+++...+. .||.-+.+++++.
T Consensus 2 kIrFKS~e~R~~Fa~~~~~N~~IAe~mG 29 (87)
T PHA02085 2 KIRFKSEEHKAMFARRHDCNQWIADKMG 29 (87)
T ss_pred ceeecCHhHHHHHHhhchhhHHHHHHhc
Confidence 36899999999998 4899999888775
No 23
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=40.54 E-value=43 Score=20.42 Aligned_cols=24 Identities=4% Similarity=0.117 Sum_probs=20.6
Q ss_pred cCCceeEEEEEEECCHHhHHhhhc
Q 035344 14 LHQGFTHIFESTFESTEGVAEYVA 37 (67)
Q Consensus 14 ~~~gy~~~l~~~F~s~e~l~~Y~~ 37 (67)
.+++||+.+.+.+.|.+++..+..
T Consensus 102 ~tG~~dl~~~v~~~d~~~l~~~~~ 125 (153)
T PRK11179 102 TTGHYSIFIKVMCRSIDALQHVLI 125 (153)
T ss_pred cccCCCEEEEEEECCHHHHHHHHH
Confidence 456899999999999999988753
No 24
>PRK13316 heme-degrading monooxygenase IsdG; Provisional
Probab=40.25 E-value=87 Score=19.14 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=25.4
Q ss_pred Ccee-EEEEEEECCHHhHHhhhcChhHHHHHH
Q 035344 16 QGFT-HIFESTFESTEGVAEYVAHPAHVEYAN 46 (67)
Q Consensus 16 ~gy~-~~l~~~F~s~e~l~~Y~~hP~H~~~~~ 46 (67)
.+|+ +...+.-+|+|+++++...+++.+..+
T Consensus 54 ~~~~e~~V~T~WeSeeaF~aW~~SdaFr~AH~ 85 (121)
T PRK13316 54 KDYEEVVVTSKWESEEAQRNWVKSDSFKKAHG 85 (121)
T ss_pred CCceEEEEEEEECCHHHHHHHhcCHHHHHHHh
Confidence 3454 677889999999999999998877665
No 25
>PHA02087 hypothetical protein
Probab=39.90 E-value=59 Score=18.32 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=19.5
Q ss_pred EEEEEECCHHhHHhhhcChhHHHHHH
Q 035344 21 IFESTFESTEGVAEYVAHPAHVEYAN 46 (67)
Q Consensus 21 ~l~~~F~s~e~l~~Y~~hP~H~~~~~ 46 (67)
+..+.|.|.|.++++....-..+--+
T Consensus 3 i~rvkfks~ehrk~fa~s~~yn~~f~ 28 (83)
T PHA02087 3 IVRVKFKSPEHRKAFAESEWYNEEFE 28 (83)
T ss_pred eEEEEcCCHHHHHHHHhhhHHHHHHH
Confidence 35689999999999998766554333
No 26
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=32.93 E-value=65 Score=19.90 Aligned_cols=23 Identities=4% Similarity=0.209 Sum_probs=19.9
Q ss_pred cCCceeEEEEEEECCHHhHHhhh
Q 035344 14 LHQGFTHIFESTFESTEGVAEYV 36 (67)
Q Consensus 14 ~~~gy~~~l~~~F~s~e~l~~Y~ 36 (67)
.+++||+.+.+.+.|.++++.+.
T Consensus 109 vtG~~d~~l~v~~~~~~~l~~~l 131 (164)
T PRK11169 109 VSGDFDYLLKTRVPDMSAYRKLL 131 (164)
T ss_pred ecCCCCEEEEEEECCHHHHHHHH
Confidence 45689999999999999998765
No 27
>PF10927 DUF2738: Protein of unknown function (DUF2738); InterPro: IPR024416 This is a family of plant and viral proteins whose function is unknown.
Probab=31.59 E-value=52 Score=22.45 Aligned_cols=24 Identities=8% Similarity=0.038 Sum_probs=19.2
Q ss_pred CeeeecccC-CccccCCceeEEEEE
Q 035344 1 MCCNRGKNV-SIENLHQGFTHIFES 24 (67)
Q Consensus 1 ~~~~~G~n~-s~e~~~~gy~~~l~~ 24 (67)
+.|+||.+. ++++.+.+|++.|..
T Consensus 43 ~lfSfGvq~~t~~~~~~~ys~~L~~ 67 (244)
T PF10927_consen 43 RLFSFGVQDDTFEGSSTSYSFSLCL 67 (244)
T ss_pred cceeecccccCCCCCCccceEEEEE
Confidence 468999876 677777889998887
No 28
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=30.18 E-value=51 Score=19.73 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=15.6
Q ss_pred EEEEEEECCHHhHHhhhc
Q 035344 20 HIFESTFESTEGVAEYVA 37 (67)
Q Consensus 20 ~~l~~~F~s~e~l~~Y~~ 37 (67)
..|+..|+|.++++.|..
T Consensus 3 siWiG~f~s~~el~~Y~e 20 (122)
T PF14112_consen 3 SIWIGNFKSEDELEEYFE 20 (122)
T ss_pred EEEEecCCCHHHHHHHhC
Confidence 468889999999999983
No 29
>PF11695 DUF3291: Domain of unknown function (DUF3291); InterPro: IPR021708 This bacterial family of proteins has no known function.
Probab=29.45 E-value=1.5e+02 Score=18.49 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=28.9
Q ss_pred eEEEEEEECCHHhHHhhhcChhHHHHHHHHhhhhc
Q 035344 19 THIFESTFESTEGVAEYVAHPAHVEYANLFLANLE 53 (67)
Q Consensus 19 ~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~ 53 (67)
.+.-++.-+|.|+|.+|.-.-.|.++.+..+.-++
T Consensus 60 ~~~nlSvWes~eaL~~Fvy~~~H~~~l~rrreWF~ 94 (140)
T PF11695_consen 60 VIVNLSVWESVEALRAFVYRGPHREALRRRREWFE 94 (140)
T ss_pred eEEEEeeeCCHHHHHHHHhcChHHHHHHHHHHHhh
Confidence 57788999999999999977669999887765543
No 30
>COG3403 Uncharacterized conserved protein [Function unknown]
Probab=26.56 E-value=1.5e+02 Score=20.38 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=25.3
Q ss_pred cCCceeEEEEEEECCHHhHHhhhcChhHHHHHHHHhhh
Q 035344 14 LHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLAN 51 (67)
Q Consensus 14 ~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~ 51 (67)
++.|==..|++.|++.|++ |..---|..+.+.+..+
T Consensus 83 ~D~g~~aSfv~~fdtPEdl--~~e~dyee~lwq~l~~L 118 (257)
T COG3403 83 RDTGKYASFVVTFDTPEDL--FTEPDYEERLWQQLRAL 118 (257)
T ss_pred cccCcceEEEEEecChhhh--hhhhhHHHHHHHHHHHH
Confidence 3344345799999999999 66666677777765543
No 31
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=25.97 E-value=1e+02 Score=15.48 Aligned_cols=18 Identities=11% Similarity=0.157 Sum_probs=14.6
Q ss_pred cChhHHHHHHHHhhhhcc
Q 035344 37 AHPAHVEYANLFLANLEK 54 (67)
Q Consensus 37 ~hP~H~~~~~~~~~~~~~ 54 (67)
.|.-|+.+++..+...+.
T Consensus 11 ~H~GH~~~l~~a~~~~~~ 28 (66)
T TIGR00125 11 FHLGHLDLLERAKELFDE 28 (66)
T ss_pred CCHHHHHHHHHHHHhCCE
Confidence 389999999988877763
No 32
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=25.31 E-value=93 Score=17.57 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=15.7
Q ss_pred CceeEEEEEEECCHHhHHh
Q 035344 16 QGFTHIFESTFESTEGVAE 34 (67)
Q Consensus 16 ~gy~~~l~~~F~s~e~l~~ 34 (67)
+.||++.++++.|.++..+
T Consensus 44 G~yD~v~i~eaPD~~~a~~ 62 (91)
T PF08734_consen 44 GEYDFVVIVEAPDDETAAA 62 (91)
T ss_pred CCCCEEEEEEcCCHHHHHH
Confidence 4599999999999887654
No 33
>PRK12866 YciI-like protein; Reviewed
Probab=23.73 E-value=1.2e+02 Score=17.33 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=19.1
Q ss_pred EEEEEEECCHHhHHhhhc-ChhHHH
Q 035344 20 HIFESTFESTEGVAEYVA-HPAHVE 43 (67)
Q Consensus 20 ~~l~~~F~s~e~l~~Y~~-hP~H~~ 43 (67)
-.++++++|.++.++... +|-+++
T Consensus 50 ~~ii~~a~s~~e~~~~l~~DPf~~~ 74 (97)
T PRK12866 50 AVLVFEGDSPAAAEAFARADPYVRN 74 (97)
T ss_pred EEEEEEeCCHHHHHHHHHcCChhhc
Confidence 455679999999999985 688765
No 34
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=23.17 E-value=53 Score=17.44 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=11.3
Q ss_pred HHhHHhhhcChhHH
Q 035344 29 TEGVAEYVAHPAHV 42 (67)
Q Consensus 29 ~e~l~~Y~~hP~H~ 42 (67)
+.++++|..+|.=+
T Consensus 18 ~~a~~aY~pdP~~V 31 (56)
T PF04431_consen 18 KAALAAYVPDPENV 31 (56)
T ss_pred HHHHHhcCCCHHHH
Confidence 56899999999754
No 35
>PF07978 NIPSNAP: NIPSNAP ; InterPro: IPR012577 Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family, which have putative roles in vesicular transport []. This domain is often found in duplicate.; PDB: 1VQY_D 2AP6_H.
Probab=22.52 E-value=1.5e+02 Score=16.15 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=23.7
Q ss_pred eeEEEEEEECCHHhHHhhhc----ChhHHHHHHHHhhh
Q 035344 18 FTHIFESTFESTEGVAEYVA----HPAHVEYANLFLAN 51 (67)
Q Consensus 18 y~~~l~~~F~s~e~l~~Y~~----hP~H~~~~~~~~~~ 51 (67)
=.+..+-.|+|.++++.... +|..++......+.
T Consensus 47 ~~~~~l~~y~~~~~r~~~~~a~~~d~~w~~~~~~~~~~ 84 (102)
T PF07978_consen 47 NQVVHLWSYDDLAAREEAREALYADPEWKAYVAEARPL 84 (102)
T ss_dssp SEEEEEEEES-HHHHHHHHHHHHH-HHHHHHHHHCCTT
T ss_pred ceEEEEEEcCCHHHHHHHHHHHHcCchHHHHHHhcccc
Confidence 35777789999999887764 88887776665554
No 36
>PRK11118 putative monooxygenase; Provisional
Probab=22.41 E-value=1.5e+02 Score=17.62 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=14.7
Q ss_pred EEECCHHhHHhhhcChhHHH
Q 035344 24 STFESTEGVAEYVAHPAHVE 43 (67)
Q Consensus 24 ~~F~s~e~l~~Y~~hP~H~~ 43 (67)
=.|+|.++.++|.. -|.+
T Consensus 54 YlF~~e~~a~aYl~--mH~a 71 (100)
T PRK11118 54 YLFEDEASAEAYLE--MHTA 71 (100)
T ss_pred EEECCHHHHHHHHH--HHHH
Confidence 46999999999997 3554
No 37
>PRK11370 YciI-like protein; Reviewed
Probab=21.65 E-value=1.4e+02 Score=16.88 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=17.5
Q ss_pred EEEEEECCHHhHHhhhc-ChhHHH
Q 035344 21 IFESTFESTEGVAEYVA-HPAHVE 43 (67)
Q Consensus 21 ~l~~~F~s~e~l~~Y~~-hP~H~~ 43 (67)
.++++|+|.++.+.... +|-+++
T Consensus 60 ~ii~ea~s~~~a~~~~~~DPy~~a 83 (99)
T PRK11370 60 TVIAEFESLEAAQAWADADPYVAA 83 (99)
T ss_pred EEEEEECCHHHHHHHHHCCchhhc
Confidence 66779999998888775 566654
No 38
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=21.23 E-value=64 Score=19.03 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=15.1
Q ss_pred EEEEEEECCHHhHHhhhcC
Q 035344 20 HIFESTFESTEGVAEYVAH 38 (67)
Q Consensus 20 ~~l~~~F~s~e~l~~Y~~h 38 (67)
-+=+=.|+|.++.++|..-
T Consensus 47 aGGiYLFe~e~~A~aY~~~ 65 (97)
T PF08803_consen 47 AGGIYLFEDEASAEAYLEM 65 (97)
T ss_dssp EEEEEEESSHHHHHHHHHH
T ss_pred cceEEEECCHHHHHHHHHH
Confidence 3445679999999999963
No 39
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=20.77 E-value=1.2e+02 Score=14.65 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=13.9
Q ss_pred hHHhhhcChhHHHHHHHHh
Q 035344 31 GVAEYVAHPAHVEYANLFL 49 (67)
Q Consensus 31 ~l~~Y~~hP~H~~~~~~~~ 49 (67)
-+++|..+|...+-.+.+-
T Consensus 9 imk~yaadpeyrkh~~v~y 27 (38)
T PF02526_consen 9 IMKAYAADPEYRKHLNVLY 27 (38)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 4789999998877666443
Done!