Query 035345
Match_columns 67
No_of_seqs 101 out of 141
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 18:21:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nud_C RIN4, RPM1-interacting 99.8 9.2E-23 3.1E-27 112.7 0.5 34 3-36 2-35 (35)
2 2ys2_A Cytoplasmic tyrosine-pr 35.4 8.7 0.0003 21.6 0.2 11 53-63 22-32 (50)
3 1ac0_A Glucoamylase; hydrolase 34.3 15 0.00053 21.8 1.2 13 6-18 27-39 (108)
4 2lk0_A RNA-binding protein 5; 30.3 8.9 0.00031 19.2 -0.3 9 9-17 1-9 (32)
5 2e6i_A Tyrosine-protein kinase 28.4 13 0.00045 21.8 0.2 11 53-63 22-32 (64)
6 2k5k_A Uncharacterized protein 24.2 25 0.00085 21.3 0.8 9 10-18 49-57 (70)
7 3sbu_A Hypothetical NTF2-like 21.5 25 0.00085 25.9 0.5 32 13-44 78-110 (261)
8 2z0b_A GDE5, KIAA1434, putativ 19.3 27 0.00094 21.8 0.3 12 7-18 30-41 (131)
9 2lul_A Tyrosine-protein kinase 19.1 30 0.001 21.8 0.5 11 53-63 137-147 (164)
10 2eef_A Protein phosphatase 1, 17.7 21 0.00072 23.8 -0.5 18 13-33 124-141 (156)
No 1
>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}
Probab=99.85 E-value=9.2e-23 Score=112.69 Aligned_cols=34 Identities=56% Similarity=1.102 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceehhHHHHHhh
Q 035345 3 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEK 36 (67)
Q Consensus 3 ~~~~~VPKFG~WD~~~p~sa~~yTviF~KaReeK 36 (67)
+++++|||||+||++||+++++|||||+|||++|
T Consensus 2 ~~~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K 35 (35)
T 2nud_C 2 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREER 35 (35)
T ss_dssp -------CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred CCCCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence 5789999999999999999999999999999997
No 2
>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}
Probab=35.44 E-value=8.7 Score=21.60 Aligned_cols=11 Identities=36% Similarity=0.778 Sum_probs=8.6
Q ss_pred CcceeeeecCC
Q 035345 53 RHGWFCCIQSP 63 (67)
Q Consensus 53 ~~k~~cc~~~~ 63 (67)
..+|.||.+..
T Consensus 22 ~g~W~CC~q~~ 32 (50)
T 2ys2_A 22 DGKFLCCQQSC 32 (50)
T ss_dssp TTEESSSCCSS
T ss_pred CCeECCCCCCC
Confidence 58999998643
No 3
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=34.35 E-value=15 Score=21.80 Aligned_cols=13 Identities=23% Similarity=0.971 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCC
Q 035345 6 RPLPKFGEWDVND 18 (67)
Q Consensus 6 ~~VPKFG~WD~~~ 18 (67)
..+|.||+||...
T Consensus 27 Gs~~~LG~W~~~~ 39 (108)
T 1ac0_A 27 GSISQLGDWETSD 39 (108)
T ss_dssp CSSSTTCSSSGGG
T ss_pred eCcHHHCCCCHHH
Confidence 3579999999753
No 4
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=30.26 E-value=8.9 Score=19.25 Aligned_cols=9 Identities=44% Similarity=1.007 Sum_probs=6.4
Q ss_pred CCCCCCCCC
Q 035345 9 PKFGEWDVN 17 (67)
Q Consensus 9 PKFG~WD~~ 17 (67)
||-|||.=.
T Consensus 1 pk~gDW~C~ 9 (32)
T 2lk0_A 1 XKFEDWLCN 9 (32)
T ss_dssp -CCSEEECT
T ss_pred CCCCCCCcC
Confidence 788999874
No 5
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.37 E-value=13 Score=21.83 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=8.6
Q ss_pred CcceeeeecCC
Q 035345 53 RHGWFCCIQSP 63 (67)
Q Consensus 53 ~~k~~cc~~~~ 63 (67)
..+|.||.+..
T Consensus 22 ~GkW~CC~q~~ 32 (64)
T 2e6i_A 22 DGKWRCCSQLE 32 (64)
T ss_dssp SSSBSSSCCSC
T ss_pred CCeECCCCCCC
Confidence 58999998643
No 6
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=24.16 E-value=25 Score=21.28 Aligned_cols=9 Identities=33% Similarity=1.298 Sum_probs=7.8
Q ss_pred CCCCCCCCC
Q 035345 10 KFGEWDVND 18 (67)
Q Consensus 10 KFG~WD~~~ 18 (67)
.||||+.+.
T Consensus 49 RYGDWE~kG 57 (70)
T 2k5k_A 49 RFGDWEKKG 57 (70)
T ss_dssp SCCCCCCCS
T ss_pred ccccchhcc
Confidence 699999985
No 7
>3sbu_A Hypothetical NTF2-like protein; cystatin-like, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; HET: MLY; 2.15A {Bacteroides fragilis}
Probab=21.46 E-value=25 Score=25.89 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=22.2
Q ss_pred CCCCCCCCC-CCCceehhHHHHHhhhcCCCCCC
Q 035345 13 EWDVNDPAS-AEGFTVIFNKARDEKKTGGKPDS 44 (67)
Q Consensus 13 ~WD~~~p~s-a~~yTviF~KaReeKk~~~~~~~ 44 (67)
.|--..=.+ -.=||+||++..+++-...+.+.
T Consensus 78 ~Wk~d~fF~~Q~yYTliFD~e~qM~~~KdT~l~ 110 (261)
T 3sbu_A 78 YWXHDDLFAXQSYYTLLFDREEDMDLVGDTSLT 110 (261)
T ss_dssp GCCCCCTTTTSSEEEEEESSGGGGGGGGCTTCS
T ss_pred hcccccceeccceEEEEEcCHHHhhhhcCCccc
Confidence 455543333 23589999999999988776654
No 8
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=19.33 E-value=27 Score=21.84 Aligned_cols=12 Identities=17% Similarity=0.689 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q 035345 7 PLPKFGEWDVND 18 (67)
Q Consensus 7 ~VPKFG~WD~~~ 18 (67)
.+|.||+||...
T Consensus 30 s~~~LG~W~p~~ 41 (131)
T 2z0b_A 30 SCDALGNWNPQN 41 (131)
T ss_dssp SSGGGTTTCGGG
T ss_pred CCCcCCCCCccc
Confidence 479999999753
No 9
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=19.13 E-value=30 Score=21.76 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=8.3
Q ss_pred CcceeeeecCC
Q 035345 53 RHGWFCCIQSP 63 (67)
Q Consensus 53 ~~k~~cc~~~~ 63 (67)
..+|.||.++.
T Consensus 137 ~~~w~CC~~~~ 147 (164)
T 2lul_A 137 DGSYQCCRQTE 147 (164)
T ss_dssp TTCCCSSSCTT
T ss_pred CCeEeeCCCCC
Confidence 46799998654
No 10
>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B; CBM_21 domain, carbohydrate binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.65 E-value=21 Score=23.75 Aligned_cols=18 Identities=22% Similarity=0.593 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCceehhHHHH
Q 035345 13 EWDVNDPASAEGFTVIFNKAR 33 (67)
Q Consensus 13 ~WD~~~p~sa~~yTviF~KaR 33 (67)
-||.|+ +.+|++.|.+.+
T Consensus 124 yWDNN~---G~NY~v~~~~~~ 141 (156)
T 2eef_A 124 YWDSNR---GKNYRIIRAELK 141 (156)
T ss_dssp EEESGG---GSCCCEEETTTS
T ss_pred EecCCC---CeeEEEEEEEec
Confidence 399885 689999998664
Done!