Query 035345
Match_columns 67
No_of_seqs 101 out of 141
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 18:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035345.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035345hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g26a_ g.3.16.1 (A:) N-termin 35.4 7 0.00051 19.2 1.1 9 52-60 20-28 (31)
2 d2ox7a1 b.172.1.1 (A:3-145) Hy 32.5 3.7 0.00027 23.9 -0.4 11 8-18 2-12 (143)
3 d1vema1 b.3.1.1 (A:418-516) be 32.0 6.1 0.00045 22.3 0.6 12 7-18 25-36 (99)
4 d1kula_ b.3.1.1 (A:) Glucoamyl 29.4 8.5 0.00062 21.7 0.9 13 6-18 27-39 (108)
5 d2p84a1 b.172.1.1 (A:3-135) Or 28.2 4.7 0.00034 24.1 -0.4 10 8-17 2-11 (133)
6 d3bmva2 b.3.1.1 (A:579-683) Cy 28.1 6.5 0.00047 22.3 0.2 12 7-18 28-39 (105)
7 d1qhoa2 b.3.1.1 (A:577-686) Cy 24.3 11 0.00078 21.3 0.7 12 7-18 29-40 (110)
8 d1cyga2 b.3.1.1 (A:575-680) Cy 22.0 9.8 0.00071 21.4 0.2 12 7-18 28-39 (106)
9 d1mkca_ g.5.1.2 (A:) Midkine, 19.8 17 0.0013 18.9 0.9 13 10-22 4-16 (43)
10 d1btka_ b.55.1.1 (A:) Bruton's 14.7 14 0.001 21.5 -0.3 11 53-63 148-158 (169)
No 1
>d1g26a_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.36 E-value=7 Score=19.23 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=7.4
Q ss_pred CCcceeeee
Q 035345 52 IRHGWFCCI 60 (67)
Q Consensus 52 ~~~k~~cc~ 60 (67)
++-+|.||-
T Consensus 20 ~sGaWgCCP 28 (31)
T d1g26a_ 20 PSGAWGCCP 28 (31)
T ss_dssp TTSCEEEEE
T ss_pred cCCceeecc
Confidence 578999994
No 2
>d2ox7a1 b.172.1.1 (A:3-145) Hypothetical protein EF1440 {Enterococcus faecalis [TaxId: 1351]}
Probab=32.52 E-value=3.7 Score=23.91 Aligned_cols=11 Identities=45% Similarity=1.205 Sum_probs=9.2
Q ss_pred CCCCCCCCCCC
Q 035345 8 LPKFGEWDVND 18 (67)
Q Consensus 8 VPKFG~WD~~~ 18 (67)
+|||-.||...
T Consensus 2 ipKFRaWdk~~ 12 (143)
T d2ox7a1 2 IPKFRAWDTYE 12 (143)
T ss_dssp CCCEEEEETTT
T ss_pred CcEEEEEECCC
Confidence 69999999763
No 3
>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}
Probab=32.01 E-value=6.1 Score=22.30 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCC
Q 035345 7 PLPKFGEWDVND 18 (67)
Q Consensus 7 ~VPKFG~WD~~~ 18 (67)
..|.+|+||.+.
T Consensus 25 s~~eLG~W~~~k 36 (99)
T d1vema1 25 NRAELGSWDTKQ 36 (99)
T ss_dssp SSGGGTTTCSSS
T ss_pred CcHHHCCCChhh
Confidence 479999999764
No 4
>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}
Probab=29.41 E-value=8.5 Score=21.68 Aligned_cols=13 Identities=23% Similarity=0.971 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCC
Q 035345 6 RPLPKFGEWDVND 18 (67)
Q Consensus 6 ~~VPKFG~WD~~~ 18 (67)
...|.+|+||.+.
T Consensus 27 Gs~~~LG~W~~~~ 39 (108)
T d1kula_ 27 GSISQLGDWETSD 39 (108)
T ss_dssp CSSGGGTTTCTTT
T ss_pred eChHHhCCCCHHH
Confidence 3589999999764
No 5
>d2p84a1 b.172.1.1 (A:3-135) Orf041 product {Staphylococcus phage 37 [TaxId: 320840]}
Probab=28.21 E-value=4.7 Score=24.08 Aligned_cols=10 Identities=50% Similarity=1.012 Sum_probs=8.6
Q ss_pred CCCCCCCCCC
Q 035345 8 LPKFGEWDVN 17 (67)
Q Consensus 8 VPKFG~WD~~ 17 (67)
+|||-.||..
T Consensus 2 iPKFRaWDk~ 11 (133)
T d2p84a1 2 IPKFREFDRE 11 (133)
T ss_dssp CCCEEEECHH
T ss_pred CCeEEEEECC
Confidence 7999999964
No 6
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}
Probab=28.13 E-value=6.5 Score=22.29 Aligned_cols=12 Identities=25% Similarity=0.894 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q 035345 7 PLPKFGEWDVND 18 (67)
Q Consensus 7 ~VPKFG~WD~~~ 18 (67)
..|.+|+||.++
T Consensus 28 s~~~LG~W~~~~ 39 (105)
T d3bmva2 28 NVAELGNWDTSK 39 (105)
T ss_dssp SSGGGTTTCGGG
T ss_pred CcHHHCCCCHHH
Confidence 579999999753
No 7
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}
Probab=24.30 E-value=11 Score=21.34 Aligned_cols=12 Identities=25% Similarity=1.030 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCC
Q 035345 7 PLPKFGEWDVND 18 (67)
Q Consensus 7 ~VPKFG~WD~~~ 18 (67)
..|.+|+||..+
T Consensus 29 ~~~~LG~W~~~~ 40 (110)
T d1qhoa2 29 NIPELGNWSTDT 40 (110)
T ss_dssp SSGGGTTTCCCC
T ss_pred CcHHHCCCChhh
Confidence 579999999864
No 8
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.01 E-value=9.8 Score=21.39 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q 035345 7 PLPKFGEWDVND 18 (67)
Q Consensus 7 ~VPKFG~WD~~~ 18 (67)
..|.+|+||.+.
T Consensus 28 s~~~LG~W~~~~ 39 (106)
T d1cyga2 28 NVYELGNWDTSK 39 (106)
T ss_dssp SSGGGBTTCGGG
T ss_pred CHHHHCCCCHHH
Confidence 479999999764
No 9
>d1mkca_ g.5.1.2 (A:) Midkine, a heparin-binding growth factor, C-terminal domain {Synthetic}
Probab=19.79 E-value=17 Score=18.86 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCC
Q 035345 10 KFGEWDVNDPASA 22 (67)
Q Consensus 10 KFG~WD~~~p~sa 22 (67)
||+.|-.=|++.+
T Consensus 4 kF~~WG~CD~~Tg 16 (43)
T d1mkca_ 4 KFENWGACDGGTG 16 (43)
T ss_dssp EECCCCSSCSSSS
T ss_pred cccccccccccCC
Confidence 7999998876553
No 10
>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.74 E-value=14 Score=21.50 Aligned_cols=11 Identities=27% Similarity=0.881 Sum_probs=8.3
Q ss_pred CcceeeeecCC
Q 035345 53 RHGWFCCIQSP 63 (67)
Q Consensus 53 ~~k~~cc~~~~ 63 (67)
..+|.||.+..
T Consensus 148 ~~~w~c~~~~~ 158 (169)
T d1btka_ 148 DGQYLCCSQTA 158 (169)
T ss_dssp TTEETTTCCCC
T ss_pred CCEEcCCCCcC
Confidence 56799998643
Done!