BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035369
         (66 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
           Complex With Insulin-Like Growth Factor Ii
 pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
           Complex With Insulin-Like Growth Factor Ii
          Length = 990

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 2   KLSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELS 61
           +L  +  V F ++DK  P  Y   +A  +  YP ++ L  E L   F P++I+M L +L 
Sbjct: 384 ELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLR 443

Query: 62  PKTVR 66
           P+ VR
Sbjct: 444 PENVR 448


>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
           Enzyme
 pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
           Enzyme
 pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
           In Complex With Compund 41367
 pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
           In Complex With Compund 41367
          Length = 990

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 2   KLSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELS 61
           +L  +  V F ++DK  P  Y   +A  +  YP ++ L  E L   F P++I+M L +L 
Sbjct: 384 ELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLR 443

Query: 62  PKTVR 66
           P+ VR
Sbjct: 444 PENVR 448


>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Insulin
 pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Insulin
 pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
           Complex With Iodinated Insulin
 pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
           Complex With Iodinated Insulin
 pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
           With Macrophage Inflammatory Protein 1 Alpha
 pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
           With Macrophage Inflammatory Protein 1 Alpha
 pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Ubiquitin
 pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Ubiquitin
 pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
           In Complex With Human B-Type Natriuretic Peptide (Bnp)
 pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
           In Complex With Human B-Type Natriuretic Peptide (Bnp)
 pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
           In Complex With Human Atrial Natriuretic Peptide (Anp)
 pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
           In Complex With Human Atrial Natriuretic Peptide (Anp)
 pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
           Inhibitor Compound 41367
 pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
           Inhibitor Compound 41367
          Length = 990

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 2   KLSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELS 61
           +L  +  V F ++DK  P  Y   +A  +  YP ++ L  E L   F P++I+M L +L 
Sbjct: 384 ELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLR 443

Query: 62  PKTVR 66
           P+ VR
Sbjct: 444 PENVR 448


>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Amylin
 pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Amylin
          Length = 969

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 2   KLSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELS 61
           +L  +  V F ++DK  P  Y   +A  +  YP ++ L  E L   F P++I+M L +L 
Sbjct: 371 ELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLR 430

Query: 62  PKTVR 66
           P+ VR
Sbjct: 431 PENVR 435


>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
 pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
 pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Amyloid-Beta (1-42)
 pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Amyloid-Beta (1-42)
          Length = 1019

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 2   KLSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELS 61
           +L  +  V F ++DK  P  Y   +A  +  YP ++ L  E L   F P++I+M L +L 
Sbjct: 413 ELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLR 472

Query: 62  PKTVR 66
           P+ VR
Sbjct: 473 PENVR 477


>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
 pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
          Length = 990

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 9   VTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELSPKTVR 66
           V F ++DK  P  Y   +A  +  YP ++ L  E L   F P++I+M L +L P+ VR
Sbjct: 391 VAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVR 448


>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Amyloid-Beta (1-40)
 pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Amyloid-Beta (1-40)
 pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Amylin
 pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Amylin
 pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Glucagon
 pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
           Complex With Glucagon
 pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
           Enzyme In Complex With Insulin B Chain
 pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
           Enzyme In Complex With Insulin B Chain
 pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
           Complex With Insulin B Chain
 pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
           Complex With Insulin B Chain
 pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
           Complexed With Co-Purified Peptides.
 pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
           Complexed With Co-Purified Peptides.
 pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
           Complex With Transforming Growth Factor-Alpha
 pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
           Complex With Transforming Growth Factor-Alpha
          Length = 990

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 9   VTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELSPKTVR 66
           V F ++DK  P  Y   +A  +  YP ++ L  E L   F P++I+M L +L P+ VR
Sbjct: 391 VAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVR 448


>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
          Length = 978

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%)

Query: 9   VTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELSPKTVR 66
           V F ++DK  P  Y   +A  +  YP    L  E L   F P++I M L +L P+ VR
Sbjct: 379 VAFRFKDKERPRGYTSKIAGKLHYYPLNGVLTAEYLLEEFRPDLIDMVLDKLRPENVR 436


>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
           Two Bound Peptides
          Length = 1019

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%)

Query: 9   VTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELSPKTVR 66
           V F ++DK  P  Y   +A  +  YP    L  E L   F P++I M L +L P+ VR
Sbjct: 420 VAFRFKDKERPRGYTSKIAGKLHYYPLNGVLTAEYLLEEFRPDLIDMVLDKLRPENVR 477


>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
          Length = 1019

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%)

Query: 9   VTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELSPKTVR 66
           V F ++DK  P  Y   +A  +  YP    L  E L   F P++I M L +L P+ VR
Sbjct: 420 VAFRFKDKERPRGYTSKIAGKLHYYPLNGVLTAEYLLEEFRPDLIDMVLDKLRPENVR 477


>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
 pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
          Length = 990

 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 9   VTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELSPKTVR 66
           V F ++DK  P  Y   +A  +  YP ++ L  E L   F P++I+M L +L P+ VR
Sbjct: 391 VAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVR 448


>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
          Length = 939

 Score = 25.8 bits (55), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/65 (21%), Positives = 31/65 (47%)

Query: 2   KLSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELS 61
           +L+ V ++ F Y      +DYV  +A  M   P +  L   ++   ++ + ++  L  ++
Sbjct: 368 ELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMT 427

Query: 62  PKTVR 66
           P+  R
Sbjct: 428 PQNAR 432


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,092,776
Number of Sequences: 62578
Number of extensions: 64406
Number of successful extensions: 129
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 12
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)