Query 035369
Match_columns 66
No_of_seqs 108 out of 494
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:30:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0959 N-arginine dibasic con 99.6 3.5E-16 7.5E-21 112.8 3.2 66 1-66 374-439 (974)
2 COG1025 Ptr Secreted/periplasm 99.4 4.3E-13 9.3E-18 96.5 3.9 66 1-66 369-434 (937)
3 PRK15101 protease3; Provisiona 99.1 1E-10 2.2E-15 84.1 3.4 66 1-66 390-455 (961)
4 COG4304 Uncharacterized protei 49.8 9 0.00019 23.2 0.9 22 43-64 111-133 (166)
5 COG2106 Uncharacterized conser 44.7 22 0.00047 23.5 2.2 44 23-66 28-73 (272)
6 KOG0181 20S proteasome, regula 36.5 19 0.00041 23.0 0.9 31 4-34 91-122 (233)
7 TIGR02194 GlrX_NrdH Glutaredox 35.8 51 0.0011 16.4 2.4 22 35-56 50-71 (72)
8 PF08621 RPAP1_N: RPAP1-like, 34.9 3 6.5E-05 20.5 -2.3 30 31-60 13-43 (49)
9 PF07939 DUF1685: Protein of u 33.1 37 0.0008 17.7 1.5 16 1-16 7-22 (64)
10 PF12645 HTH_16: Helix-turn-he 32.8 18 0.0004 18.5 0.4 14 49-62 11-24 (65)
11 PF06743 FAST_1: FAST kinase-l 32.4 11 0.00024 19.4 -0.5 36 23-58 26-64 (71)
12 TIGR03544 DivI1A_domain DivIVA 30.7 50 0.0011 14.5 1.6 16 45-60 15-30 (34)
13 PF12564 TypeIII_RM_meth: Type 29.1 47 0.001 16.8 1.5 11 48-58 1-11 (57)
14 PF08410 DUF1737: Domain of un 28.3 26 0.00056 17.5 0.5 25 8-32 3-27 (54)
15 cd07402 MPP_GpdQ Enterobacter 27.3 93 0.002 18.9 2.9 56 5-60 4-66 (240)
16 PF14659 Phage_int_SAM_3: Phag 26.9 34 0.00073 16.0 0.7 20 41-60 38-57 (58)
17 TIGR03488 cas_Cas5p CRISPR-ass 26.6 23 0.00051 22.2 0.2 45 14-58 20-73 (237)
18 PF07521 RMMBL: RNA-metabolisi 26.3 37 0.00081 15.7 0.8 20 46-65 16-35 (43)
19 COG4031 Predicted metal-bindin 25.4 85 0.0018 20.0 2.5 44 12-61 51-94 (227)
20 PRK10329 glutaredoxin-like pro 24.2 65 0.0014 16.8 1.6 21 38-58 54-74 (81)
21 PF02598 Methyltrn_RNA_3: Puta 23.7 20 0.00043 23.7 -0.6 44 23-66 24-83 (291)
22 PF13503 DUF4123: Domain of un 23.2 24 0.00051 19.4 -0.3 43 18-63 76-118 (124)
23 PF03489 SapB_2: Saposin-like 22.7 40 0.00086 14.6 0.5 18 46-63 9-26 (35)
24 PF08230 Cpl-7: Cpl-7 lysozyme 22.1 83 0.0018 14.9 1.6 14 47-60 27-40 (42)
25 TIGR02196 GlrX_YruB Glutaredox 21.7 1.1E+02 0.0024 14.4 2.8 18 41-58 57-74 (74)
26 PF14345 GDYXXLXY: GDYXXLXY pr 21.4 26 0.00055 20.4 -0.4 21 32-52 29-49 (144)
27 PF07055 Eno-Rase_FAD_bd: Enoy 21.2 65 0.0014 16.7 1.2 15 51-65 21-35 (65)
28 PF15614 WHIM3: WSTF, HB1, Itc 20.7 73 0.0016 15.4 1.2 17 49-65 6-23 (46)
29 cd01784 rasfadin_RA Ubiquitin- 20.7 90 0.002 17.2 1.7 15 50-64 26-40 (87)
No 1
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.5e-16 Score=112.76 Aligned_cols=66 Identities=39% Similarity=0.777 Sum_probs=64.6
Q ss_pred ChHhhHHhhcccCCCCCChhHHHHHHHHhCCCCCCcCeeeCCCCCCCCCHHHHHHHHhccCCCCCC
Q 035369 1 MKLSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELSPKTVR 66 (66)
Q Consensus 1 ~E~~~~~~~~F~f~ek~~p~~~~~~la~~m~~~p~ed~L~~~~l~~~~d~~~i~~~l~~Ltp~N~r 66 (66)
+|++.+++..|||+++.+|+++|+.+|.+|+.||+++||.|++++.+|+|+.|+++++.|+|.|+|
T Consensus 374 ~E~~~~~~~~Frf~~k~~p~~~~~~~~~nlq~~P~~~il~~~~ll~~~~p~~i~~~~~~L~p~n~~ 439 (974)
T KOG0959|consen 374 KELQLISEVKFRFQDKEPPMEYASEIASNLQYYPVEDVLTGSYLLTEFDPDLIQEVLSSLVPSNMR 439 (974)
T ss_pred HHHHHhhhhheeecccCCcHHHHHHHHhhcccCChHHhhcchhhhhhcChHHHHHHHHhcCcccce
Confidence 589999999999999999999999999999999999999999999999999999999999999986
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.3e-13 Score=96.46 Aligned_cols=66 Identities=32% Similarity=0.535 Sum_probs=64.6
Q ss_pred ChHhhHHhhcccCCCCCChhHHHHHHHHhCCCCCCcCeeeCCCCCCCCCHHHHHHHHhccCCCCCC
Q 035369 1 MKLSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELSPKTVR 66 (66)
Q Consensus 1 ~E~~~~~~~~F~f~ek~~p~~~~~~la~~m~~~p~ed~L~~~~l~~~~d~~~i~~~l~~Ltp~N~r 66 (66)
+|++.+.++.|+|.++.+|+++++++|.+|+.+|+++++.+..++.+||++.|+.+|..|+|+|+|
T Consensus 369 ~Elq~v~~l~f~y~~~t~~~~~~~~l~~~m~~~p~~~~~~~~~~~~~yd~~~~~~~l~~~~pen~R 434 (937)
T COG1025 369 DELQNVLDLDFRYPSKTRPMDYVSWLADNMEREPVEHTLYASLVLPRYDPKAIQERLALMTPENAR 434 (937)
T ss_pred HHHHHHHHhhhcccccCChHHHHHHHHHhcccCChhhhhchhhcccccCHHHHHHHHHhhCccceE
Confidence 589999999999999999999999999999999999999999999999999999999999999987
No 3
>PRK15101 protease3; Provisional
Probab=99.07 E-value=1e-10 Score=84.05 Aligned_cols=66 Identities=24% Similarity=0.463 Sum_probs=62.5
Q ss_pred ChHhhHHhhcccCCCCCChhHHHHHHHHhCCCCCCcCeeeCCCCCCCCCHHHHHHHHhccCCCCCC
Q 035369 1 MKLSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELSPKTVR 66 (66)
Q Consensus 1 ~E~~~~~~~~F~f~ek~~p~~~~~~la~~m~~~p~ed~L~~~~l~~~~d~~~i~~~l~~Ltp~N~r 66 (66)
++.+.+..++|+|.++..+++++..+|.+|+.+|+++++.+.++++++|++.|++++++|+|+|++
T Consensus 390 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~l~~~n~~ 455 (961)
T PRK15101 390 DELAHVLDLDFRYPSITRDMDYIEWLADTMLRVPVEHTLDAPYIADRYDPKAIKARLAEMTPQNAR 455 (961)
T ss_pred HHHHHHHhccccCCCCCChHHHHHHHHHHhhhCCHHHheeCchhhhcCCHHHHHHHHhhcCHhHEE
Confidence 367888999999999999999999999999999999999999999999999999999999999974
No 4
>COG4304 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.78 E-value=9 Score=23.21 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=17.2
Q ss_pred CCCCCCC-HHHHHHHHhccCCCC
Q 035369 43 SLPSNFN-PEIIQMTLKELSPKT 64 (66)
Q Consensus 43 ~l~~~~d-~~~i~~~l~~Ltp~N 64 (66)
.++..|| |+.|.+++++|-|.|
T Consensus 111 ~iYaDFdYPe~iEsFvAYMP~kd 133 (166)
T COG4304 111 KIYADFDYPEEIESFVAYMPPKD 133 (166)
T ss_pred HHHHhcCChHHHHHHHHhCCccc
Confidence 3455666 899999999998876
No 5
>COG2106 Uncharacterized conserved protein [Function unknown]
Probab=44.72 E-value=22 Score=23.53 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=30.2
Q ss_pred HHHHHHhCCCCCCcCeeeC-CCCCCCCCHHHHHHHHhcc-CCCCCC
Q 035369 23 VVTVAANMETYPPQDWLVG-ESLPSNFNPEIIQMTLKEL-SPKTVR 66 (66)
Q Consensus 23 ~~~la~~m~~~p~ed~L~~-~~l~~~~d~~~i~~~l~~L-tp~N~r 66 (66)
|..+|..-..|-.++|+.- +....+=+...|+.+|+|+ ||.++|
T Consensus 28 vg~IARaaaiF~V~eIii~~D~~~~~~~~~~i~~lL~Y~~TPpyLR 73 (272)
T COG2106 28 VGQIARAAAIFRVDEIIIYEDGDDVRRDAKFITTLLEYFETPPYLR 73 (272)
T ss_pred HHHHHHHHHhhcccEEEEEeCCCCccchhHHHHHHHHHhcCCHHHH
Confidence 4455555445666666553 5555555899999999998 898775
No 6
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=36.49 E-value=19 Score=22.96 Aligned_cols=31 Identities=26% Similarity=0.530 Sum_probs=23.5
Q ss_pred hhHHhhccc-CCCCCChhHHHHHHHHhCCCCC
Q 035369 4 SAVCEVTFH-YQDKVPPIDYVVTVAANMETYP 34 (66)
Q Consensus 4 ~~~~~~~F~-f~ek~~p~~~~~~la~~m~~~p 34 (66)
+++++.=++ |++..+-..+|..+|.-||.|.
T Consensus 91 rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyT 122 (233)
T KOG0181|consen 91 RKIAEQYYRVYGEPIPTTQLVQEVASVMQEYT 122 (233)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 445555444 7888888999999999998654
No 7
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=35.85 E-value=51 Score=16.40 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=16.1
Q ss_pred CcCeeeCCCCCCCCCHHHHHHH
Q 035369 35 PQDWLVGESLPSNFNPEIIQMT 56 (66)
Q Consensus 35 ~ed~L~~~~l~~~~d~~~i~~~ 56 (66)
|-=++.|......|+|+.|.++
T Consensus 50 P~v~~~g~~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 50 PVIVADGDLSWSGFRPDKLKAL 71 (72)
T ss_pred CEEEECCCcEEeccCHHHHHhc
Confidence 3334547778899999999874
No 8
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=34.89 E-value=3 Score=20.47 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=22.5
Q ss_pred CCCCCcCeeeC-CCCCCCCCHHHHHHHHhcc
Q 035369 31 ETYPPQDWLVG-ESLPSNFNPEIIQMTLKEL 60 (66)
Q Consensus 31 ~~~p~ed~L~~-~~l~~~~d~~~i~~~l~~L 60 (66)
....+++|+.. ..++..+||.+|.-+++.-
T Consensus 13 ~~MS~eEI~~er~eL~~~LdP~li~~L~~R~ 43 (49)
T PF08621_consen 13 ASMSPEEIEEEREELLESLDPKLIEFLKKRA 43 (49)
T ss_pred HhCCHHHHHHHHHHHHHhCCHHHHHHHHHhh
Confidence 34577777775 5788889999999887653
No 9
>PF07939 DUF1685: Protein of unknown function (DUF1685); InterPro: IPR012881 The members of this family are hypothetical eukaryotic proteins of unknown function. The region in question is approximately 100 amino acid residues long.
Probab=33.08 E-value=37 Score=17.66 Aligned_cols=16 Identities=13% Similarity=0.430 Sum_probs=13.1
Q ss_pred ChHhhHHhhcccCCCC
Q 035369 1 MKLSAVCEVTFHYQDK 16 (66)
Q Consensus 1 ~E~~~~~~~~F~f~ek 16 (66)
+|+|..-+++|.|.+.
T Consensus 7 dELkGc~dLGFgF~~~ 22 (64)
T PF07939_consen 7 DELKGCIDLGFGFDEE 22 (64)
T ss_pred HHHhhhhhhccccCcc
Confidence 5888999999999444
No 10
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=32.82 E-value=18 Score=18.49 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=10.7
Q ss_pred CHHHHHHHHhccCC
Q 035369 49 NPEIIQMTLKELSP 62 (66)
Q Consensus 49 d~~~i~~~l~~Ltp 62 (66)
|+++|.++|++..|
T Consensus 11 D~~A~~~IL~~y~~ 24 (65)
T PF12645_consen 11 DPEAMEEILKHYEP 24 (65)
T ss_pred CHHHHHHHHHHHHH
Confidence 68888888877654
No 11
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=32.38 E-value=11 Score=19.41 Aligned_cols=36 Identities=14% Similarity=0.355 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCCCcCeeeC---CCCCCCCCHHHHHHHHh
Q 035369 23 VVTVAANMETYPPQDWLVG---ESLPSNFNPEIIQMTLK 58 (66)
Q Consensus 23 ~~~la~~m~~~p~ed~L~~---~~l~~~~d~~~i~~~l~ 58 (66)
+..+...+...+|.+++.. -.+++.|..+.|+.+++
T Consensus 26 ~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~ 64 (71)
T PF06743_consen 26 IERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFS 64 (71)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcC
Confidence 4455555667788877764 57789999999998875
No 12
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=30.70 E-value=50 Score=14.52 Aligned_cols=16 Identities=6% Similarity=0.223 Sum_probs=13.6
Q ss_pred CCCCCHHHHHHHHhcc
Q 035369 45 PSNFNPEIIQMTLKEL 60 (66)
Q Consensus 45 ~~~~d~~~i~~~l~~L 60 (66)
+..|+++.+..+|..+
T Consensus 15 ~rGY~~~eVD~fLd~v 30 (34)
T TIGR03544 15 LRGYDAAEVDAFLDRV 30 (34)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4789999999999865
No 13
>PF12564 TypeIII_RM_meth: Type III restriction/modification enzyme methylation subunit; InterPro: IPR022221 This domain family is found in bacteria, and is approximately 60 amino acids in length. It is found in association with PF01555 from PFAM. There are two completely conserved residues (F and S) that may be functionally important. It is found in bacterial phage resistance proteins, in particular in the methylation subunit of the type III restriction/modification enzyme complex [].
Probab=29.11 E-value=47 Score=16.80 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=8.7
Q ss_pred CCHHHHHHHHh
Q 035369 48 FNPEIIQMTLK 58 (66)
Q Consensus 48 ~d~~~i~~~l~ 58 (66)
||+++|..+|+
T Consensus 1 yD~~Li~~LL~ 11 (57)
T PF12564_consen 1 YDEELIKALLS 11 (57)
T ss_pred CCHHHHHHHHc
Confidence 68888888875
No 14
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=28.31 E-value=26 Score=17.54 Aligned_cols=25 Identities=4% Similarity=0.082 Sum_probs=20.9
Q ss_pred hhcccCCCCCChhHHHHHHHHhCCC
Q 035369 8 EVTFHYQDKVPPIDYVVTVAANMET 32 (66)
Q Consensus 8 ~~~F~f~ek~~p~~~~~~la~~m~~ 32 (66)
..+||+..-.++.+++..++..|..
T Consensus 3 k~~Yr~lt~~d~~~fc~rVt~aL~~ 27 (54)
T PF08410_consen 3 KKHYRVLTGPDDSAFCHRVTEALNE 27 (54)
T ss_pred cceeEEEECCChHHHHHHHHHHHHc
Confidence 4568888889999999999999863
No 15
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=27.28 E-value=93 Score=18.89 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=34.3
Q ss_pred hHHhhcccCCC-----CCChhHHHHHHHHhCCCC--CCcCeeeCCCCCCCCCHHHHHHHHhcc
Q 035369 5 AVCEVTFHYQD-----KVPPIDYVVTVAANMETY--PPQDWLVGESLPSNFNPEIIQMTLKEL 60 (66)
Q Consensus 5 ~~~~~~F~f~e-----k~~p~~~~~~la~~m~~~--p~ed~L~~~~l~~~~d~~~i~~~l~~L 60 (66)
.++++++.... ...+......+...+... .+.-++.+..+....+++..+.+++.|
T Consensus 4 ~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l 66 (240)
T cd07402 4 QISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELL 66 (240)
T ss_pred EEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHH
Confidence 34556655321 245566667776766553 667777777888888876655555443
No 16
>PF14659 Phage_int_SAM_3: Phage integrase, N-terminal SAM-like domain; PDB: 2KD1_A 2KOB_A 2KHQ_A 3LYS_E 2KIW_A 2KKP_A.
Probab=26.89 E-value=34 Score=16.00 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=15.3
Q ss_pred CCCCCCCCCHHHHHHHHhcc
Q 035369 41 GESLPSNFNPEIIQMTLKEL 60 (66)
Q Consensus 41 ~~~l~~~~d~~~i~~~l~~L 60 (66)
|...+.+.++..|+.+++.|
T Consensus 38 g~~~i~~It~~~i~~~~~~l 57 (58)
T PF14659_consen 38 GNKKIKDITPRDIQNFINEL 57 (58)
T ss_dssp TSSBGGG--HHHHHHHHHHH
T ss_pred CcCcHHHCCHHHHHHHHHHc
Confidence 88888889999999988765
No 17
>TIGR03488 cas_Cas5p CRISPR-associated protein, Cas5p family. CC Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pgingi (Porphyromonas gingivalis) subtype, but shows some sequence similarity to genes of the Cas5 type (see TIGR02593).
Probab=26.64 E-value=23 Score=22.19 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=30.9
Q ss_pred CCCCChhHHHHHHHHhCC---CCCCcCeeeC---CCCCCCCC---HHHHHHHHh
Q 035369 14 QDKVPPIDYVVTVAANME---TYPPQDWLVG---ESLPSNFN---PEIIQMTLK 58 (66)
Q Consensus 14 ~ek~~p~~~~~~la~~m~---~~p~ed~L~~---~~l~~~~d---~~~i~~~l~ 58 (66)
-|...|++.|+.+..... .||.+++|+| ..+-..|| -++|++=+.
T Consensus 20 iep~apismvselpgsfykal~~p~k~iicgl~envlgwh~~~kdr~~i~kdie 73 (237)
T TIGR03488 20 IEPHAPISMVSELPGSFYKALLVPDKHIICGLFENVLGWHFDRKDREAIQKDIE 73 (237)
T ss_pred ecCCCcHHHHHhCchhHHHHhcCCcchhhhhhhhhhhhcccchhhHHHHHHHHH
Confidence 356779999999988864 4999999998 23334444 455555443
No 18
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=26.27 E-value=37 Score=15.68 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHhccCCCCC
Q 035369 46 SNFNPEIIQMTLKELSPKTV 65 (66)
Q Consensus 46 ~~~d~~~i~~~l~~Ltp~N~ 65 (66)
..-|.+.+.++++.+.|+++
T Consensus 16 gHad~~~L~~~i~~~~p~~v 35 (43)
T PF07521_consen 16 GHADREELLEFIEQLNPRKV 35 (43)
T ss_dssp SS-BHHHHHHHHHHHCSSEE
T ss_pred CCCCHHHHHHHHHhcCCCEE
Confidence 34467788888888888653
No 19
>COG4031 Predicted metal-binding protein [General function prediction only]
Probab=25.45 E-value=85 Score=19.99 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=33.7
Q ss_pred cCCCCCChhHHHHHHHHhCCCCCCcCeeeCCCCCCCCCHHHHHHHHhccC
Q 035369 12 HYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELS 61 (66)
Q Consensus 12 ~f~ek~~p~~~~~~la~~m~~~p~ed~L~~~~l~~~~d~~~i~~~l~~Lt 61 (66)
++-+...--.++..||..++.|-|+++.... .++.|.+.+..|.
T Consensus 51 ~gDedg~lRNl~erlae~i~s~rpe~~~v~g------s~e~I~~v~e~l~ 94 (227)
T COG4031 51 RGDEDGSLRNLYERLAERIYSYRPESIVVSG------SEELIDEVLEGLR 94 (227)
T ss_pred cCCCcchHHHHHHHHHHHHHhcCccceEecC------ChHHHHHHHhhce
Confidence 5555555567888999999999999988755 4788888887765
No 20
>PRK10329 glutaredoxin-like protein; Provisional
Probab=24.22 E-value=65 Score=16.79 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=16.9
Q ss_pred eeeCCCCCCCCCHHHHHHHHh
Q 035369 38 WLVGESLPSNFNPEIIQMTLK 58 (66)
Q Consensus 38 ~L~~~~l~~~~d~~~i~~~l~ 58 (66)
+..++.....|+++.|.++..
T Consensus 54 v~i~~~~~~Gf~~~~l~~~~~ 74 (81)
T PRK10329 54 VIAGDLSWSGFRPDMINRLHP 74 (81)
T ss_pred EEECCEEEecCCHHHHHHHHH
Confidence 445777788999999999874
No 21
>PF02598 Methyltrn_RNA_3: Putative RNA methyltransferase; InterPro: IPR003750 This entry describes proteins of unknown function.; PDB: 1K3R_B.
Probab=23.67 E-value=20 Score=23.66 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=24.1
Q ss_pred HHHHHHhCCCCCCcCeeeCCC---------------CCCCCCHHHHHHHHhcc-CCCCCC
Q 035369 23 VVTVAANMETYPPQDWLVGES---------------LPSNFNPEIIQMTLKEL-SPKTVR 66 (66)
Q Consensus 23 ~~~la~~m~~~p~ed~L~~~~---------------l~~~~d~~~i~~~l~~L-tp~N~r 66 (66)
|..||.....|-..+|+..+. --..-+...|..+|+|| ||..+|
T Consensus 24 ~gqIARaaaiF~VdEIvVydd~~~~~~~~~~~~~~~~~~~~~~~~l~~lLqYleTPpYLR 83 (291)
T PF02598_consen 24 AGQIARAAAIFRVDEIVVYDDSPKVQNNQDGENEKGKSNRDDAEFLARLLQYLETPPYLR 83 (291)
T ss_dssp HHHHHHHHHHTT--EEEEEE-----------------SSS--HHHHHHHHHHHHS-HHHH
T ss_pred HHHHHHHHHeecCcEEEEEccccccccccccccccccCCCCHHHHHHHHHHHhcCCHHHH
Confidence 455555555566666665433 23444578899999998 887654
No 22
>PF13503 DUF4123: Domain of unknown function (DUF4123)
Probab=23.17 E-value=24 Score=19.39 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=26.8
Q ss_pred ChhHHHHHHHHhCCCCCCcCeeeCCCCCCCCCHHHHHHHHhccCCC
Q 035369 18 PPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELSPK 63 (66)
Q Consensus 18 ~p~~~~~~la~~m~~~p~ed~L~~~~l~~~~d~~~i~~~l~~Ltp~ 63 (66)
+....+..+...+.-..+. -+..++.-|||..+..++..|+++
T Consensus 76 ~~~~l~~hLr~~~~v~~~~---g~~~llRfyDprvl~~l~~~l~~~ 118 (124)
T PF13503_consen 76 PLDELAAHLRSLLQVRLPD---GRSVLLRFYDPRVLSALLPSLSPE 118 (124)
T ss_pred CHHHHHHHHHHhceeECCC---CCEEEEEcCCHHHHHHHHHhCCHH
Confidence 3334455555555422221 135677788999999999999874
No 23
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=22.74 E-value=40 Score=14.57 Aligned_cols=18 Identities=39% Similarity=0.813 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHhccCCC
Q 035369 46 SNFNPEIIQMTLKELSPK 63 (66)
Q Consensus 46 ~~~d~~~i~~~l~~Ltp~ 63 (66)
+.|-|..|+.+.+.++|+
T Consensus 9 ~~y~~~ii~~l~~~~~p~ 26 (35)
T PF03489_consen 9 DQYGPQIIQLLEKQLDPQ 26 (35)
T ss_dssp HHHHHHHHHHHHTTSTHH
T ss_pred HHHHHHHHHHHHhcCChH
Confidence 345577788888877764
No 24
>PF08230 Cpl-7: Cpl-7 lysozyme C-terminal domain; InterPro: IPR013168 This domain was originally found in the C-terminal moiety of the Cp-7 lysin (lysozyme, P19385 from SWISSPROT) encoded by Bacteriophage Cp-7. It is assumed that this domain represents a cell wall binding motif although no direct evidence has been obtained so far to support this.
Probab=22.05 E-value=83 Score=14.95 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHhcc
Q 035369 47 NFNPEIIQMTLKEL 60 (66)
Q Consensus 47 ~~d~~~i~~~l~~L 60 (66)
.||.+.|+..++.+
T Consensus 27 GydY~~VQ~~VN~~ 40 (42)
T PF08230_consen 27 GYDYDAVQARVNEL 40 (42)
T ss_pred CCCHHHHHHHHHHH
Confidence 68888888887754
No 25
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=21.71 E-value=1.1e+02 Score=14.37 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=13.1
Q ss_pred CCCCCCCCCHHHHHHHHh
Q 035369 41 GESLPSNFNPEIIQMTLK 58 (66)
Q Consensus 41 ~~~l~~~~d~~~i~~~l~ 58 (66)
++..+..++++.|+++++
T Consensus 57 ~~~~~~g~~~~~i~~~i~ 74 (74)
T TIGR02196 57 GHKIIVGFDPEKLDQLLE 74 (74)
T ss_pred CCEEEeeCCHHHHHHHhC
Confidence 344566789999988764
No 26
>PF14345 GDYXXLXY: GDYXXLXY protein
Probab=21.43 E-value=26 Score=20.38 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.3
Q ss_pred CCCCcCeeeCCCCCCCCCHHH
Q 035369 32 TYPPQDWLVGESLPSNFNPEI 52 (66)
Q Consensus 32 ~~p~ed~L~~~~l~~~~d~~~ 52 (66)
-+.|.|++.|+|+.-.|+-..
T Consensus 29 PvDPRdllrGdYv~L~Y~i~~ 49 (144)
T PF14345_consen 29 PVDPRDLLRGDYVALNYDISR 49 (144)
T ss_pred ccCcccccccceEEEEccccc
Confidence 378999999999998887543
No 27
>PF07055 Eno-Rase_FAD_bd: Enoyl reductase FAD binding domain; InterPro: IPR010758 This family contains a number of bacterial putative reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3S8M_A 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A.
Probab=21.21 E-value=65 Score=16.72 Aligned_cols=15 Identities=0% Similarity=0.120 Sum_probs=11.3
Q ss_pred HHHHHHHhccCCCCC
Q 035369 51 EIIQMTLKELSPKTV 65 (66)
Q Consensus 51 ~~i~~~l~~Ltp~N~ 65 (66)
+.|.++...+|++|+
T Consensus 21 ~~V~~lw~~it~en~ 35 (65)
T PF07055_consen 21 AEVAELWEQITTENF 35 (65)
T ss_dssp HHHHHHHCCT-CCCH
T ss_pred HHHHHHHHHhccccH
Confidence 567888889999885
No 28
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=20.71 E-value=73 Score=15.43 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=11.9
Q ss_pred CHHHHHHHHhcc-CCCCC
Q 035369 49 NPEIIQMTLKEL-SPKTV 65 (66)
Q Consensus 49 d~~~i~~~l~~L-tp~N~ 65 (66)
+|+.+.+++..| .|.-.
T Consensus 6 ~~e~ld~L~~aL~~prG~ 23 (46)
T PF15614_consen 6 DPEELDELLKALENPRGK 23 (46)
T ss_pred CHHHHHHHHHHHcCcccH
Confidence 577778888777 76543
No 29
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=20.70 E-value=90 Score=17.18 Aligned_cols=15 Identities=13% Similarity=0.565 Sum_probs=12.8
Q ss_pred HHHHHHHHhccCCCC
Q 035369 50 PEIIQMTLKELSPKT 64 (66)
Q Consensus 50 ~~~i~~~l~~Ltp~N 64 (66)
++.|+.+|+-+.++|
T Consensus 26 ~eVI~~LL~KFkv~~ 40 (87)
T cd01784 26 PQVLKLLLNKFKIEN 40 (87)
T ss_pred HHHHHHHHHhccccC
Confidence 688999999988876
Done!