BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035373
(66 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225429205|ref|XP_002276348.1| PREDICTED: uncharacterized protein LOC100258330 [Vitis vinifera]
Length = 64
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 61/65 (93%), Gaps = 2/65 (3%)
Query: 1 MAINQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRP 60
MAI QLENLVESIKSKVRALKK K KPYIKMDKSSSVKVEIRSRKAKKLIDKT++ ADRP
Sbjct: 1 MAI-QLENLVESIKSKVRALKKSK-KPYIKMDKSSSVKVEIRSRKAKKLIDKTMRAADRP 58
Query: 61 GKRSI 65
GKR+I
Sbjct: 59 GKRTI 63
>gi|224105751|ref|XP_002313920.1| predicted protein [Populus trichocarpa]
gi|222850328|gb|EEE87875.1| predicted protein [Populus trichocarpa]
Length = 65
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 62/65 (95%), Gaps = 1/65 (1%)
Query: 1 MAINQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRP 60
MAI QLENLV+SIKSKVRALKKK KPYIKMDKS+SVKVEIRSRKA+KLIDKTLQVADRP
Sbjct: 1 MAI-QLENLVQSIKSKVRALKKKSKKPYIKMDKSASVKVEIRSRKARKLIDKTLQVADRP 59
Query: 61 GKRSI 65
GKR+I
Sbjct: 60 GKRTI 64
>gi|224060879|ref|XP_002300282.1| predicted protein [Populus trichocarpa]
gi|222847540|gb|EEE85087.1| predicted protein [Populus trichocarpa]
Length = 64
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%), Gaps = 2/65 (3%)
Query: 1 MAINQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRP 60
MAI QLENLV+SIKSKVRALKK K KPYIKMDKS+SV+VEIRSRKA+KLIDKTLQVADRP
Sbjct: 1 MAI-QLENLVQSIKSKVRALKKSK-KPYIKMDKSASVRVEIRSRKARKLIDKTLQVADRP 58
Query: 61 GKRSI 65
GKR I
Sbjct: 59 GKRVI 63
>gi|255562224|ref|XP_002522120.1| conserved hypothetical protein [Ricinus communis]
gi|223538719|gb|EEF40320.1| conserved hypothetical protein [Ricinus communis]
Length = 64
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/62 (88%), Positives = 59/62 (95%), Gaps = 1/62 (1%)
Query: 4 NQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKR 63
NQLENLV+SIKSKVR+LKK K KPYIKMDKSSSVKVEIRSRKAK+LIDKTL+ ADRPGKR
Sbjct: 3 NQLENLVQSIKSKVRSLKKSK-KPYIKMDKSSSVKVEIRSRKAKQLIDKTLKKADRPGKR 61
Query: 64 SI 65
SI
Sbjct: 62 SI 63
>gi|297834878|ref|XP_002885321.1| hypothetical protein ARALYDRAFT_479483 [Arabidopsis lyrata subsp.
lyrata]
gi|297331161|gb|EFH61580.1| hypothetical protein ARALYDRAFT_479483 [Arabidopsis lyrata subsp.
lyrata]
Length = 61
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 52/59 (88%), Gaps = 1/59 (1%)
Query: 5 QLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKR 63
QLE+L+E+IKSKV L+KKK KPYIKMDKSSSV+V IR +K + LIDKTL+VADRPGKR
Sbjct: 4 QLESLMETIKSKVSLLRKKK-KPYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRPGKR 61
>gi|307135953|gb|ADN33813.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 64
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/62 (83%), Positives = 56/62 (90%), Gaps = 1/62 (1%)
Query: 4 NQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKR 63
NQL NLVESIKSKV+A KK KPYIKMDKSSSVKVEIRSRKA+ LIDKTL+VADRPGKR
Sbjct: 3 NQLGNLVESIKSKVKA-LKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGKR 61
Query: 64 SI 65
+I
Sbjct: 62 TI 63
>gi|15230915|ref|NP_188600.1| uncharacterized protein [Arabidopsis thaliana]
gi|9294431|dbj|BAB02551.1| unnamed protein product [Arabidopsis thaliana]
gi|30102564|gb|AAP21200.1| At3g19660 [Arabidopsis thaliana]
gi|110743915|dbj|BAE99791.1| hypothetical protein [Arabidopsis thaliana]
gi|332642751|gb|AEE76272.1| uncharacterized protein [Arabidopsis thaliana]
Length = 64
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%), Gaps = 1/61 (1%)
Query: 5 QLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKRS 64
QLE+L+E+IKSKV L+KKK K YIKMDKSSSV+V IR +K + LIDKTL+VADRPGKR+
Sbjct: 4 QLESLMETIKSKVSLLRKKK-KTYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRPGKRT 62
Query: 65 I 65
+
Sbjct: 63 L 63
>gi|449465089|ref|XP_004150261.1| PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus]
gi|449484378|ref|XP_004156865.1| PREDICTED: uncharacterized LOC101219359 [Cucumis sativus]
Length = 64
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 56/62 (90%), Gaps = 1/62 (1%)
Query: 4 NQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKR 63
NQL NLVESIKSKV+A KK KPYIKMDKSSSVKVEIRSRKA+ LIDKT++VADRPGKR
Sbjct: 3 NQLGNLVESIKSKVKA-LKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGKR 61
Query: 64 SI 65
+I
Sbjct: 62 TI 63
>gi|357480709|ref|XP_003610640.1| hypothetical protein MTR_5g005330 [Medicago truncatula]
gi|355511975|gb|AES93598.1| hypothetical protein MTR_5g005330 [Medicago truncatula]
Length = 71
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/57 (78%), Positives = 51/57 (89%), Gaps = 2/57 (3%)
Query: 4 NQLENLVESIKSKVRA-LKKKKNK-PYIKMDKSSSVKVEIRSRKAKKLIDKTLQVAD 58
NQL NLVESIKSKV++ LK KK K PYIKMDKS+SVKVEIRSRKA+KLI+KTL+ AD
Sbjct: 3 NQLGNLVESIKSKVKSTLKMKKGKKPYIKMDKSASVKVEIRSRKARKLIEKTLKAAD 59
>gi|356495813|ref|XP_003516766.1| PREDICTED: 40S ribosomal protein S20-1-like [Glycine max]
Length = 135
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 5 QLENLVESIKSKVRALKKKKNK-PYIKMDKSSSVKVEIRSRKA 46
QL NLVESIKSKVR+LK KK K PY+KMDKS+SVKVEIRSRKA
Sbjct: 8 QLGNLVESIKSKVRSLKPKKGKKPYMKMDKSASVKVEIRSRKA 50
>gi|224127588|ref|XP_002329315.1| predicted protein [Populus trichocarpa]
gi|222870769|gb|EEF07900.1| predicted protein [Populus trichocarpa]
Length = 65
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Query: 1 MAINQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRP 60
M L +LV ++KSK+R+LK KK PY K++KS S++VEIRSRKA+KL+++TL++AD P
Sbjct: 1 MMTMGLGSLVMNLKSKIRSLKMKK--PYDKIEKSDSMRVEIRSRKARKLVEETLKIADSP 58
>gi|356573869|ref|XP_003555078.1| PREDICTED: uncharacterized protein LOC100527519 [Glycine max]
gi|255632530|gb|ACU16615.1| unknown [Glycine max]
Length = 64
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%)
Query: 6 LENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRP 60
L L+ ++KSK+R+LK K Y K++KS S+++EIRSRKA+KLI++TL+VAD P
Sbjct: 3 LGRLMVTLKSKIRSLKIMKKPDYDKVEKSESMRMEIRSRKARKLIEETLKVADSP 57
>gi|356545616|ref|XP_003541233.1| PREDICTED: uncharacterized protein LOC100805982 [Glycine max]
Length = 64
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%)
Query: 6 LENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRP 60
L L+ ++KSK+R+LK K Y K++KS S+++EIRSRKA+KLI++TL+VAD P
Sbjct: 3 LGRLMVTLKSKIRSLKILKKPDYDKVEKSESMRMEIRSRKARKLIEETLKVADSP 57
>gi|357147788|ref|XP_003574485.1| PREDICTED: uncharacterized protein LOC100842569 [Brachypodium
distachyon]
Length = 81
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 3 INQLENLVESIKSKVRALKKKKNK-------PYIKMDKSSSVKVEIRSRKAKKLIDKTLQ 55
+ QL V+ IKSK+RA K++ Y KM K+ S++VEI+SR+A+KLI K L
Sbjct: 4 MGQLGRFVDGIKSKLRAGGGGKSRKAAAAAAAYDKMGKTDSMRVEIKSRQAQKLIAKNLV 63
Query: 56 VADRPGKRS 64
AD G+RS
Sbjct: 64 AADSIGRRS 72
>gi|357147790|ref|XP_003574486.1| PREDICTED: uncharacterized protein LOC100842876 [Brachypodium
distachyon]
Length = 82
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 8/70 (11%)
Query: 3 INQLENLVESIKSKVRALKKKKNKP--------YIKMDKSSSVKVEIRSRKAKKLIDKTL 54
+ QL V+ IKSK+RA KN Y KM K+ S++VEIRSR+A+KLI K L
Sbjct: 4 MGQLGRFVDGIKSKLRAGGGGKNGKKAAAAAAAYDKMGKTDSMRVEIRSRQAQKLIAKNL 63
Query: 55 QVADRPGKRS 64
AD G+RS
Sbjct: 64 VAADSIGRRS 73
>gi|242079133|ref|XP_002444335.1| hypothetical protein SORBIDRAFT_07g020340 [Sorghum bicolor]
gi|241940685|gb|EES13830.1| hypothetical protein SORBIDRAFT_07g020340 [Sorghum bicolor]
Length = 89
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 15/75 (20%)
Query: 3 INQLENLVESIKSKVRALKKKKN------KP---------YIKMDKSSSVKVEIRSRKAK 47
+ QL LV+ IKS++RA K KP Y K++K+ S++VEIRSR+A+
Sbjct: 4 MGQLGRLVDGIKSRLRAGGGNKQRGGATRKPAATTTTTTGYDKVEKTESMRVEIRSRQAR 63
Query: 48 KLIDKTLQVADRPGK 62
KLI K L AD G+
Sbjct: 64 KLIAKNLHAADSIGR 78
>gi|125561550|gb|EAZ06998.1| hypothetical protein OsI_29245 [Oryza sativa Indica Group]
gi|125603419|gb|EAZ42744.1| hypothetical protein OsJ_27323 [Oryza sativa Japonica Group]
Length = 106
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 3 INQLENLVESIKSKVRALKKKKNK---------PYIKMDKSSSVKVEIRSRKAKKLIDKT 53
+ QL ++ IKSK+R +K Y KMDK+ S++VEIRSR+A+KLI K
Sbjct: 29 MGQLGRFMDGIKSKLRGGGGRKTGRKKEAAAMMTYDKMDKTESMRVEIRSRQAQKLIAKN 88
Query: 54 LQVADRPGKR 63
L AD G+R
Sbjct: 89 LVAADSIGRR 98
>gi|115476428|ref|NP_001061810.1| Os08g0416800 [Oryza sativa Japonica Group]
gi|37573057|dbj|BAC98585.1| unknown protein [Oryza sativa Japonica Group]
gi|113623779|dbj|BAF23724.1| Os08g0416800 [Oryza sativa Japonica Group]
gi|215693067|dbj|BAG88487.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 81
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 9/71 (12%)
Query: 3 INQLENLVESIKSKVRALKKKKNK---------PYIKMDKSSSVKVEIRSRKAKKLIDKT 53
+ QL ++ IKSK+R +K Y KMDK+ S++VEIRSR+A+KLI K
Sbjct: 4 MGQLGRFMDGIKSKLRGGGGRKTGRKKEAAAMMTYDKMDKTESMRVEIRSRQAQKLIAKN 63
Query: 54 LQVADRPGKRS 64
L AD G+R+
Sbjct: 64 LVAADSIGRRN 74
>gi|326520970|dbj|BAJ92848.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 79
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 3 INQLENLVESIKSKVRALKKKKNKP-----YIKMDKSSSVKVEIRSRKAKKLIDKTLQVA 57
+ QL LV+ ++SK+RA K K Y +M K+ S++VEI+SR+A+KLI K L A
Sbjct: 4 MGQLGRLVDGLRSKMRAGVGGKKKKAAAAAYEQMGKTDSMRVEIKSRQAQKLIAKNLVAA 63
Query: 58 DRPGKRS 64
D G+RS
Sbjct: 64 DSIGRRS 70
>gi|212720879|ref|NP_001131954.1| uncharacterized protein LOC100193349 [Zea mays]
gi|194693020|gb|ACF80594.1| unknown [Zea mays]
gi|195657721|gb|ACG48328.1| hypothetical protein [Zea mays]
gi|414870571|tpg|DAA49128.1| TPA: hypothetical protein ZEAMMB73_577030 [Zea mays]
Length = 90
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 15/75 (20%)
Query: 3 INQLENLVESIKSKVRA-LKKKKNK--------------PYIKMDKSSSVKVEIRSRKAK 47
+ QL LV+ IKS++RA NK Y K++K+ S++VEIRSR+A+
Sbjct: 4 MGQLGRLVDGIKSRLRAGAGTGGNKRGGARKAAATTTTTGYDKVEKTESMRVEIRSRQAR 63
Query: 48 KLIDKTLQVADRPGK 62
KLI K L A G+
Sbjct: 64 KLIAKNLDAAGSVGR 78
>gi|297841399|ref|XP_002888581.1| hypothetical protein ARALYDRAFT_475817 [Arabidopsis lyrata subsp.
lyrata]
gi|297334422|gb|EFH64840.1| hypothetical protein ARALYDRAFT_475817 [Arabidopsis lyrata subsp.
lyrata]
Length = 84
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 16/76 (21%)
Query: 5 QLENLVESIKSKVR-ALKKKKNKP---------------YIKMDKSSSVKVEIRSRKAKK 48
+L +VE +KSK++ L+ +K Y K++KS S++ E+RSRKA K
Sbjct: 6 RLGKIVEGLKSKIKTGLRMRKRSSLSSSSSSSSSSSSSSYEKIEKSESMRFELRSRKAHK 65
Query: 49 LIDKTLQVADRPGKRS 64
+I +TLQ+AD P R+
Sbjct: 66 IIKETLQIADSPTSRT 81
>gi|62320083|dbj|BAD94252.1| hypothetical protein [Arabidopsis thaliana]
gi|98961949|gb|ABF59304.1| unknown protein [Arabidopsis thaliana]
Length = 88
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 28 YIKMDKSSSVKVEIRSRKAKKLIDKTLQVADRPGKRS 64
Y K++KS S++ E+RS+KA K+I +TLQ+AD P R+
Sbjct: 49 YEKIEKSESMRFELRSKKAHKIIQETLQIADSPTSRT 85
>gi|242044584|ref|XP_002460163.1| hypothetical protein SORBIDRAFT_02g023700 [Sorghum bicolor]
gi|241923540|gb|EER96684.1| hypothetical protein SORBIDRAFT_02g023700 [Sorghum bicolor]
Length = 89
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 3 INQLENLVESIKSKVRA-------LKKKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKTLQ 55
+ +L LV+ IK K+ + Y K+DK+ S++VEIRSR+A++LI K L
Sbjct: 1 MGKLARLVDGIKEKLGGGAGNGKKMTAAACYDYDKVDKTESMRVEIRSRRARQLIAKNLA 60
Query: 56 VAD 58
AD
Sbjct: 61 AAD 63
>gi|49388878|dbj|BAD26088.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125563535|gb|EAZ08915.1| hypothetical protein OsI_31180 [Oryza sativa Indica Group]
gi|125605527|gb|EAZ44563.1| hypothetical protein OsJ_29183 [Oryza sativa Japonica Group]
Length = 86
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 9/65 (13%)
Query: 3 INQLENLVESIKSKVRALK---------KKKNKPYIKMDKSSSVKVEIRSRKAKKLIDKT 53
+ +L LV IK+++R K + Y KM+K++S+KVEI SR+A+KLI K
Sbjct: 1 MGKLAKLVGGIKARLRRRKMLTAAAAESSSSSSCYDKMEKTNSMKVEITSRRAQKLIAKN 60
Query: 54 LQVAD 58
L + D
Sbjct: 61 LAIVD 65
>gi|357158242|ref|XP_003578063.1| PREDICTED: uncharacterized protein LOC100846760 [Brachypodium
distachyon]
Length = 78
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 10/66 (15%)
Query: 3 INQLENLVESIKSKVRA-LKKKKNKP---------YIKMDKSSSVKVEIRSRKAKKLIDK 52
+ ++ LV+ IK+ +R +KKK++ Y K+ K+ S++VEIRSR+A++LI K
Sbjct: 1 MGKMARLVDGIKATLRNKIKKKQDDEGAAPPYSACYDKVGKTESMRVEIRSRRAQQLIAK 60
Query: 53 TLQVAD 58
L AD
Sbjct: 61 NLAAAD 66
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.125 0.309
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 708,406,776
Number of Sequences: 23463169
Number of extensions: 17713628
Number of successful extensions: 100928
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 100885
Number of HSP's gapped (non-prelim): 32
length of query: 66
length of database: 8,064,228,071
effective HSP length: 38
effective length of query: 28
effective length of database: 7,172,627,649
effective search space: 200833574172
effective search space used: 200833574172
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 69 (31.2 bits)