BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035373
         (66 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
 pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
 pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
 pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
          Length = 455

 Score = 25.8 bits (55), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 10  VESIKSKVRALKKKKNKPYIKMDKSS 35
           +E+IKSKV     KK KP++ +D S+
Sbjct: 158 IEAIKSKVDVEAIKKRKPFVVVDTSN 183


>pdb|2A0K|A Chain A, Crystal Structure Of Nucleoside
          2-Deoxyribosyltransferase From Trypanosoma Brucei At
          1.8 A Resolution
 pdb|2A0K|B Chain B, Crystal Structure Of Nucleoside
          2-Deoxyribosyltransferase From Trypanosoma Brucei At
          1.8 A Resolution
 pdb|2F2T|A Chain A, Crystal Structure Of Nucleoside
          2-Deoxyribosyltransferase From Trypanosoma Brucei At
          1.7 A Resolution With 5-Aminoisoquinoline Bound
 pdb|2F2T|B Chain B, Crystal Structure Of Nucleoside
          2-Deoxyribosyltransferase From Trypanosoma Brucei At
          1.7 A Resolution With 5-Aminoisoquinoline Bound
 pdb|2F62|A Chain A, Crystal Structure Of Nucleoside
          2-Deoxyribosyltransferase From Trypanosoma Brucei At
          1.5 A Resolution With (2-Ethylphenyl)methanol Bound
 pdb|2F62|B Chain B, Crystal Structure Of Nucleoside
          2-Deoxyribosyltransferase From Trypanosoma Brucei At
          1.5 A Resolution With (2-Ethylphenyl)methanol Bound
 pdb|2F64|A Chain A, Crystal Structure Of Nucleoside
          2-Deoxyribosyltransferase From Trypanosoma Brucei At
          1.6 A Resolution With 1-Methylquinolin-2(1h)- One Bound
 pdb|2F64|B Chain B, Crystal Structure Of Nucleoside
          2-Deoxyribosyltransferase From Trypanosoma Brucei At
          1.6 A Resolution With 1-Methylquinolin-2(1h)- One Bound
 pdb|2F67|A Chain A, Crystal Structure Of Nucleoside
          2-Deoxyribosyltransferase From Trypanosoma Brucei At
          1.6 A Resolution With Benzo[cd]indol-2(1h)-One Bound
 pdb|2F67|B Chain B, Crystal Structure Of Nucleoside
          2-Deoxyribosyltransferase From Trypanosoma Brucei At
          1.6 A Resolution With Benzo[cd]indol-2(1h)-One Bound
          Length = 161

 Score = 25.4 bits (54), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 12 SIKSKVRALKKKKN-KPYIKMDKSSSVKVEIRSRKAKKLIDKTLQVAD 58
          S  +KVR L KK+N  P I  D  ++  ++IR +  + + D    +AD
Sbjct: 27 SYYNKVRELLKKENVXPLIPTDNEATEALDIRQKNIQXIKDCDAVIAD 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.125    0.309 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,331,240
Number of Sequences: 62578
Number of extensions: 33173
Number of successful extensions: 119
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 6
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)