Query 035373
Match_columns 66
No_of_seqs 18 out of 20
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 03:25:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oeg_A Apolipoprotein E; siali 59.7 3.2 0.00011 21.3 0.9 18 2-19 6-23 (26)
2 2l5r_A Antimicrobial peptide a 27.5 47 0.0016 17.0 2.2 17 3-19 7-23 (26)
3 3vjf_A WA20; protein design, d 22.6 63 0.0022 20.8 2.6 21 2-22 1-21 (102)
4 3te3_A Polycystic kidney disea 17.9 1E+02 0.0036 16.7 2.5 18 4-21 17-34 (39)
5 3j21_E 50S ribosomal protein L 17.2 98 0.0033 21.3 2.8 26 34-59 75-100 (186)
6 4gif_A Polycystic kidney disea 15.1 1.3E+02 0.0045 16.8 2.5 18 4-21 17-34 (45)
7 1lv4_A Catestatin, chromograni 12.8 28 0.00097 18.0 -0.7 11 35-45 1-11 (26)
8 1oef_A Apolipoprotein E; glyco 12.7 1.4E+02 0.0049 14.0 2.1 12 4-15 12-23 (26)
9 2bhm_A Type IV secretion syste 12.6 87 0.003 19.4 1.4 21 24-44 73-93 (164)
10 1qd7_I S17 ribosomal protein; 12.4 67 0.0023 19.7 0.8 14 29-42 12-25 (89)
No 1
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=59.68 E-value=3.2 Score=21.35 Aligned_cols=18 Identities=28% Similarity=0.363 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 035373 2 AINQLENLVESIKSKVRA 19 (66)
Q Consensus 2 m~~qLg~lv~~iKsk~r~ 19 (66)
|..|+..|||.+++.+.+
T Consensus 6 mr~Q~~~lveKvq~a~~~ 23 (26)
T 1oeg_A 6 MQRQWAGLVEKVQAAVGT 23 (26)
T ss_dssp TTTHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 568999999999987643
No 2
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=27.50 E-value=47 Score=17.02 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 035373 3 INQLENLVESIKSKVRA 19 (66)
Q Consensus 3 ~~qLg~lv~~iKsk~r~ 19 (66)
...||.||.||-.-+-+
T Consensus 7 kaglgslvkgiaahvas 23 (26)
T 2l5r_A 7 KAGLGSLVKGIAAHVAS 23 (26)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHhHHHHHHHHHHHHhh
Confidence 35799999999876643
No 3
>3vjf_A WA20; protein design, de novo protein, binary patterned design, FO bundle, rudimentary enzymatic activitie; 2.20A {Synthetic construct}
Probab=22.63 E-value=63 Score=20.85 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhh
Q 035373 2 AINQLENLVESIKSKVRALKK 22 (66)
Q Consensus 2 m~~qLg~lv~~iKsk~r~~~~ 22 (66)
|-|.|.+||+-||.-+..+-+
T Consensus 1 mygklnklvehikellqqlnk 21 (102)
T 3vjf_A 1 MYGKLNKLVEHIKELLQQLNK 21 (102)
T ss_dssp --CHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 568999999999998877653
No 4
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=17.95 E-value=1e+02 Score=16.72 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 035373 4 NQLENLVESIKSKVRALK 21 (66)
Q Consensus 4 ~qLg~lv~~iKsk~r~~~ 21 (66)
.||++-++||-|+|-+..
T Consensus 17 lqlE~~l~gI~S~idav~ 34 (39)
T 3te3_A 17 LQLETVLEGVVSQIDAVG 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 589999999999997754
No 5
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=17.22 E-value=98 Score=21.28 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=23.2
Q ss_pred ccceeeeeehHHHHHHHHHhhhhccC
Q 035373 34 SSSVKVEIRSRKAKKLIDKTLQVADR 59 (66)
Q Consensus 34 s~SmrVEIRSRkArkLI~ktL~~ADs 59 (66)
.-.++|.+|-.+|-..+++-|.++|.
T Consensus 75 pIG~kVTLRG~~myeFL~rll~v~d~ 100 (186)
T 3j21_E 75 PIAVKVTLRGPKAYELLKRLLAAVDN 100 (186)
T ss_dssp CCEEEEEECSHHHHHHHHHHHHHSCS
T ss_pred ceeeEEEEcChhHHHHHHHHHHHhcc
Confidence 34589999999999999999999985
No 6
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=15.08 E-value=1.3e+02 Score=16.79 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 035373 4 NQLENLVESIKSKVRALK 21 (66)
Q Consensus 4 ~qLg~lv~~iKsk~r~~~ 21 (66)
.||++-++||-|+|-+..
T Consensus 17 lqlE~~l~gI~S~idav~ 34 (45)
T 4gif_A 17 LQLETVLEGVVSQIDAVG 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 588999999999887754
No 7
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=12.76 E-value=28 Score=17.97 Aligned_cols=11 Identities=45% Similarity=0.676 Sum_probs=8.6
Q ss_pred cceeeeeehHH
Q 035373 35 SSVKVEIRSRK 45 (66)
Q Consensus 35 ~SmrVEIRSRk 45 (66)
+||++..|+|+
T Consensus 1 ~SMKlsFRar~ 11 (26)
T 1lv4_A 1 SSMKLSFRARA 11 (26)
T ss_dssp CCSCSCSCCCS
T ss_pred CCceEeeeeee
Confidence 48888888874
No 8
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=12.75 E-value=1.4e+02 Score=14.00 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHH
Q 035373 4 NQLENLVESIKS 15 (66)
Q Consensus 4 ~qLg~lv~~iKs 15 (66)
-||..+++.|++
T Consensus 12 ~q~~~i~e~i~~ 23 (26)
T 1oef_A 12 RQWAGLVEKVQA 23 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 455666665553
No 9
>2bhm_A Type IV secretion system protein VIRB8; bacterial protein, bacterial type IV secretion; 2.4A {Brucella melitensis biovar suis} SCOP: d.17.4.26
Probab=12.57 E-value=87 Score=19.36 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=16.5
Q ss_pred cCCcchhccCccceeeeeehH
Q 035373 24 KNKPYIKMDKSSSVKVEIRSR 44 (66)
Q Consensus 24 ~kk~Y~Km~Ks~SmrVEIRSR 44 (66)
...||....++..+.|+|.|=
T Consensus 73 ~~~P~~~~~~~~~v~V~I~Si 93 (164)
T 2bhm_A 73 DKALDKQYGSNVRTSVTIVSI 93 (164)
T ss_dssp SSCHHHHHTTTCEEEEEEEEE
T ss_pred CCcHhHhhcCCcEEEEEEEEE
Confidence 356777788888999999884
No 10
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=12.38 E-value=67 Score=19.74 Aligned_cols=14 Identities=50% Similarity=0.446 Sum_probs=11.6
Q ss_pred hhccCccceeeeee
Q 035373 29 IKMDKSSSVKVEIR 42 (66)
Q Consensus 29 ~Km~Ks~SmrVEIR 42 (66)
+||+||--++||-+
T Consensus 12 ~Km~KTivV~ve~~ 25 (89)
T 1qd7_I 12 DKMDKTITVLVETY 25 (89)
T ss_pred cCCCceEEEEEEEE
Confidence 68999998888854
Done!