Query 035373
Match_columns 66
No_of_seqs 18 out of 20
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 03:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035373.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035373hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iznb_ e.43.1.2 (B:) Capz bet 24.1 13 0.00097 25.6 1.3 36 3-43 209-244 (270)
2 d1vqod1 d.77.1.1 (D:10-174) Ri 17.8 58 0.0042 20.3 3.3 29 35-64 60-88 (165)
3 d1cf1a1 b.1.18.11 (A:10-182) A 10.8 50 0.0036 21.4 1.4 15 29-43 153-167 (173)
4 d1g4ma1 b.1.18.11 (A:5-175) Ar 9.9 49 0.0035 21.4 1.1 17 27-43 150-166 (171)
5 d1srsa_ d.88.1.1 (A:) Serum re 8.9 46 0.0033 18.9 0.6 25 34-58 60-84 (84)
6 d1ej0a_ c.66.1.2 (A:) RNA meth 8.3 66 0.0048 19.1 1.2 10 42-51 3-12 (180)
7 d2gy9q1 b.40.4.5 (Q:5-82) Ribo 7.6 60 0.0043 17.8 0.7 14 29-42 10-23 (78)
8 d1wxxa1 b.122.1.9 (A:1-64) Hyp 7.3 91 0.0067 16.3 1.4 14 37-50 1-14 (64)
9 d2od5a1 a.4.5.70 (A:6-96) Hypo 7.3 92 0.0067 18.1 1.5 9 3-11 42-50 (91)
10 d1rw1a_ c.47.1.12 (A:) Hypothe 7.0 94 0.0069 16.8 1.4 11 43-53 13-23 (114)
No 1
>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=24.11 E-value=13 Score=25.63 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCCcchhccCccceeeeeeh
Q 035373 3 INQLENLVESIKSKVRALKKKKNKPYIKMDKSSSVKVEIRS 43 (66)
Q Consensus 3 ~~qLg~lv~~iKsk~r~~~~k~kk~Y~Km~Ks~SmrVEIRS 43 (66)
...+|+|||.+-+++|... ...=.+|+-.+--.+||
T Consensus 209 i~NiG~mIEdmE~~mR~~L-----~~VYf~KtkdIv~~lRs 244 (270)
T d1iznb_ 209 IANIGRLVEDMENKIRSTL-----NEIYFGKTKDIVNGLRS 244 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHTHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhccc
Confidence 3568999999999999987 34445555544444444
No 2
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=17.85 E-value=58 Score=20.26 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=23.5
Q ss_pred cceeeeeehHHHHHHHHHhhhhccCCCCcc
Q 035373 35 SSVKVEIRSRKAKKLIDKTLQVADRPGKRS 64 (66)
Q Consensus 35 ~SmrVEIRSRkArkLI~ktL~~ADs~~~rt 64 (66)
-.++|.+|-.++-.++++-|.+++ |..+.
T Consensus 60 iG~kVTLRg~~m~~FL~rll~~~~-~~~k~ 88 (165)
T d1vqod1 60 IGAKVTLRDEMAEEFLQTALPLAE-LATSQ 88 (165)
T ss_dssp EEEEEEECTHHHHHHHHTTGGGSC-CCSTT
T ss_pred EEEEEEEechhHHHHHHHHhcccc-CCccc
Confidence 347999999999999999999886 44443
No 3
>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}
Probab=10.76 E-value=50 Score=21.41 Aligned_cols=15 Identities=47% Similarity=0.508 Sum_probs=13.4
Q ss_pred hhccCccceeeeeeh
Q 035373 29 IKMDKSSSVKVEIRS 43 (66)
Q Consensus 29 ~Km~Ks~SmrVEIRS 43 (66)
||..|.+|||.-||-
T Consensus 153 ek~hkr~sVrL~IRK 167 (173)
T d1cf1a1 153 DKIPKKSSVRLLIRK 167 (173)
T ss_dssp TCCCSTTEEEEEEEE
T ss_pred ccccccceeEEEEEe
Confidence 688999999999983
No 4
>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}
Probab=9.87 E-value=49 Score=21.41 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=14.3
Q ss_pred cchhccCccceeeeeeh
Q 035373 27 PYIKMDKSSSVKVEIRS 43 (66)
Q Consensus 27 ~Y~Km~Ks~SmrVEIRS 43 (66)
.=||..|.+|||.-||-
T Consensus 150 ~dek~hkR~sVrL~IRK 166 (171)
T d1g4ma1 150 LEEKIHKRNSVRLVIRK 166 (171)
T ss_dssp TTSCCCGGGEEEEEEEE
T ss_pred ccccccccceEEEEEEE
Confidence 35788999999999983
No 5
>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.91 E-value=46 Score=18.93 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.4
Q ss_pred ccceeeeeehHHHHHHHHHhhhhcc
Q 035373 34 SSSVKVEIRSRKAKKLIDKTLQVAD 58 (66)
Q Consensus 34 s~SmrVEIRSRkArkLI~ktL~~AD 58 (66)
|.||.=-|.+-..++|++..|...|
T Consensus 60 s~~~~~vi~~~~~~~l~~~~l~~~D 84 (84)
T d1srsa_ 60 TRKLQPMITSETGKALIQTCLNSPD 84 (84)
T ss_dssp CGGGHHHHSSHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCC
Confidence 4566666888899999999998877
No 6
>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}
Probab=8.26 E-value=66 Score=19.10 Aligned_cols=10 Identities=50% Similarity=0.348 Sum_probs=8.7
Q ss_pred ehHHHHHHHH
Q 035373 42 RSRKAKKLID 51 (66)
Q Consensus 42 RSRkArkLI~ 51 (66)
|||-|-||+|
T Consensus 3 rsRaafKL~E 12 (180)
T d1ej0a_ 3 RSRAWFKLDE 12 (180)
T ss_dssp SCHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 8999999955
No 7
>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli [TaxId: 562]}
Probab=7.55 E-value=60 Score=17.80 Aligned_cols=14 Identities=43% Similarity=0.313 Sum_probs=11.1
Q ss_pred hhccCccceeeeee
Q 035373 29 IKMDKSSSVKVEIR 42 (66)
Q Consensus 29 ~Km~Ks~SmrVEIR 42 (66)
++|+||--++||-+
T Consensus 10 ~km~KTv~V~v~r~ 23 (78)
T d2gy9q1 10 DKMEKSIVVAIERF 23 (78)
T ss_dssp CCSSSEEEEEEEEE
T ss_pred cCCCCcEEEEEEEE
Confidence 68999988888754
No 8
>d1wxxa1 b.122.1.9 (A:1-64) Hypothetical protein TTHA1280, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=7.35 E-value=91 Score=16.32 Aligned_cols=14 Identities=14% Similarity=0.636 Sum_probs=11.0
Q ss_pred eeeeeehHHHHHHH
Q 035373 37 VKVEIRSRKAKKLI 50 (66)
Q Consensus 37 mrVEIRSRkArkLI 50 (66)
|||.+..++++.|-
T Consensus 1 mkv~lk~~~~~rl~ 14 (64)
T d1wxxa1 1 MRIQVNAKGAARLL 14 (64)
T ss_dssp CCEEECHHHHHHHH
T ss_pred CEEEEccchhhHhh
Confidence 68888888887764
No 9
>d2od5a1 a.4.5.70 (A:6-96) Hypothetical protein GOS_3836187 {Environmental samples}
Probab=7.29 E-value=92 Score=18.07 Aligned_cols=9 Identities=33% Similarity=0.460 Sum_probs=7.2
Q ss_pred hhHHHHHHH
Q 035373 3 INQLENLVE 11 (66)
Q Consensus 3 ~~qLg~lv~ 11 (66)
|+|||++++
T Consensus 42 mnQlgNILa 50 (91)
T d2od5a1 42 SQQLGNVLS 50 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 689998875
No 10
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.98 E-value=94 Score=16.81 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=8.3
Q ss_pred hHHHHHHHHHh
Q 035373 43 SRKAKKLIDKT 53 (66)
Q Consensus 43 SRkArkLI~kt 53 (66)
||+|.++++++
T Consensus 13 srka~~~L~~~ 23 (114)
T d1rw1a_ 13 MKKARTWLDEH 23 (114)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 78888887753
Done!