Your job contains 1 sequence.
>035374
MASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGMLVFNV
ECFSEM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035374
(66 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2083775 - symbol:AT3G52050 species:3702 "Arabi... 223 7.5e-18 1
TIGR_CMR|BA_4831 - symbol:BA_4831 "DNA polymerase I" spec... 124 1.1e-06 1
TIGR_CMR|GSU_0541 - symbol:GSU_0541 "DNA polymerase I" sp... 124 1.2e-06 1
TIGR_CMR|SO_4669 - symbol:SO_4669 "DNA polymerase I" spec... 124 1.2e-06 1
UNIPROTKB|Q3ABL3 - symbol:polA "DNA polymerase" species:2... 120 2.8e-06 1
TIGR_CMR|CHY_1650 - symbol:CHY_1650 "DNA polymerase I" sp... 120 2.8e-06 1
TIGR_CMR|NSE_0675 - symbol:NSE_0675 "DNA polymerase I" sp... 119 3.6e-06 1
TIGR_CMR|CJE_0383 - symbol:CJE_0383 "DNA polymerase type ... 113 1.7e-05 1
DICTYBASE|DDB_G0267464 - symbol:polA "mitochondrial DNA p... 115 1.7e-05 1
TIGR_CMR|ECH_0080 - symbol:ECH_0080 "DNA polymerase I" sp... 113 1.9e-05 1
UNIPROTKB|P0A550 - symbol:polA "DNA polymerase I" species... 110 3.7e-05 1
UNIPROTKB|P00582 - symbol:polA species:83333 "Escherichia... 110 3.8e-05 1
UNIPROTKB|Q0C2B4 - symbol:polA "DNA polymerase I" species... 108 6.2e-05 1
UNIPROTKB|Q48PV5 - symbol:polA "DNA polymerase I" species... 105 0.00013 1
UNIPROTKB|Q9KVN3 - symbol:VC_0108 "DNA polymerase I" spec... 105 0.00013 1
TIGR_CMR|VC_0108 - symbol:VC_0108 "DNA polymerase I" spec... 105 0.00013 1
TIGR_CMR|DET_1391 - symbol:DET_1391 "DNA-directed DNA pol... 102 0.00026 1
UNIPROTKB|Q47YA8 - symbol:xni "Protein Xni" species:16787... 95 0.00031 1
TIGR_CMR|CPS_3538 - symbol:CPS_3538 "exodeoxyribonuclease... 95 0.00031 1
TIGR_CMR|CPS_4978 - symbol:CPS_4978 "DNA polymerase I" sp... 100 0.00045 1
TIGR_CMR|SO_1549 - symbol:SO_1549 "exodeoxyribonuclease I... 91 0.00069 1
TIGR_CMR|SPO_3844 - symbol:SPO_3844 "DNA polymerase I" sp... 98 0.00073 1
>TAIR|locus:2083775 [details] [associations]
symbol:AT3G52050 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739 SMART:SM00279
SMART:SM00475 EMBL:CP002686 GO:GO:0003677 GO:GO:0008152
EMBL:AL049711 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
IPI:IPI00846770 RefSeq:NP_001078270.1 UniGene:At.50269
ProteinModelPortal:A8MQG8 SMR:A8MQG8 STRING:A8MQG8 PaxDb:A8MQG8
PRIDE:A8MQG8 EnsemblPlants:AT3G52050.3 GeneID:824368
KEGG:ath:AT3G52050 TAIR:At3g52050 HOGENOM:HOG000015113 OMA:HDGVPYG
PhylomeDB:A8MQG8 ProtClustDB:CLSN2680900 Genevestigator:A8MQG8
Uniprot:A8MQG8
Length = 448
Score = 223 (83.6 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 40/56 (71%), Positives = 52/56 (92%)
Query: 1 MASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
MASFGMEDFA+K+G L+P+QFVD+I+L GDK+DNIPGV+GIG+V AV+LI++FG L
Sbjct: 296 MASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTL 351
>TIGR_CMR|BA_4831 [details] [associations]
symbol:BA_4831 "DNA polymerase I" species:198094 "Bacillus
anthracis str. Ames" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755 TIGRFAMs:TIGR00593
RefSeq:NP_847034.1 RefSeq:YP_021476.2 HSSP:P52026
ProteinModelPortal:Q81L03 SMR:Q81L03 IntAct:Q81L03
EnsemblBacteria:EBBACT00000010925 EnsemblBacteria:EBBACT00000018409
GeneID:1083984 GeneID:2815024 KEGG:ban:BA_4831 KEGG:bar:GBAA_4831
PATRIC:18787240 BioCyc:BANT261594:GJ7F-4693-MONOMER Uniprot:Q81L03
Length = 877
Score = 124 (48.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54
E KY L P Q +D+ L+GD++DNIPGV G+G+ A++L+T+FG
Sbjct: 163 EALFEKYS-LSPKQIIDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFG 209
>TIGR_CMR|GSU_0541 [details] [associations]
symbol:GSU_0541 "DNA polymerase I" species:243231
"Geobacter sulfurreducens PCA" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HSSP:P00582
RefSeq:NP_951599.1 ProteinModelPortal:Q74FR5 SMR:Q74FR5
GeneID:2685802 KEGG:gsu:GSU0541 PATRIC:22023837
BioCyc:GSUL243231:GH27-525-MONOMER Uniprot:Q74FR5
Length = 891
Score = 124 (48.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 5 GMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
G+ + ++G + P Q +D++ L GD +DNIPGV GIG+ A +LI +FG L
Sbjct: 158 GIPEVVERFG-VGPGQVIDILGLAGDTSDNIPGVPGIGEKTATKLIQEFGSL 208
>TIGR_CMR|SO_4669 [details] [associations]
symbol:SO_4669 "DNA polymerase I" species:211586
"Shewanella oneidensis MR-1" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 HSSP:P00582 HOGENOM:HOG000020999
RefSeq:NP_720184.1 ProteinModelPortal:Q8E8J5 GeneID:1172251
KEGG:son:SO_4669 PATRIC:23529003 ProtClustDB:CLSK907759
Uniprot:Q8E8J5
Length = 922
Score = 124 (48.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 5 GMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54
G E+ A KYG + P + +D ++L+GDKADNIPG+ G+G+ A+ ++T G
Sbjct: 161 GPEEVAAKYG-VGPDRIIDFLALMGDKADNIPGLPGVGEKTALAMLTGAG 209
>UNIPROTKB|Q3ABL3 [details] [associations]
symbol:polA "DNA polymerase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278 SMART:SM00279
SMART:SM00475 SMART:SM00482 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_360471.1 ProteinModelPortal:Q3ABL3
STRING:Q3ABL3 GeneID:3728305 KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 120 (47.3 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 25/42 (59%), Positives = 30/42 (71%)
Query: 13 YGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54
YG LKP Q VDV L+GD +DNIPGV GIG+ A+ LI +G
Sbjct: 168 YG-LKPKQLVDVKGLMGDPSDNIPGVPGIGEKTALDLIKTYG 208
>TIGR_CMR|CHY_1650 [details] [associations]
symbol:CHY_1650 "DNA polymerase I" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00475
SMART:SM00482 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 RefSeq:YP_360471.1
ProteinModelPortal:Q3ABL3 STRING:Q3ABL3 GeneID:3728305
KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 120 (47.3 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 25/42 (59%), Positives = 30/42 (71%)
Query: 13 YGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54
YG LKP Q VDV L+GD +DNIPGV GIG+ A+ LI +G
Sbjct: 168 YG-LKPKQLVDVKGLMGDPSDNIPGVPGIGEKTALDLIKTYG 208
>TIGR_CMR|NSE_0675 [details] [associations]
symbol:NSE_0675 "DNA polymerase I" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335
OMA:EQRRYAK ProtClustDB:PRK05755 RefSeq:YP_506553.1
ProteinModelPortal:Q2GD93 STRING:Q2GD93 GeneID:3932157
KEGG:nse:NSE_0675 PATRIC:22681369
BioCyc:NSEN222891:GHFU-689-MONOMER Uniprot:Q2GD93
Length = 829
Score = 119 (46.9 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 5 GMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
G+ + K+G P+Q D +SLVGD +DNIPGV GIG A +L+ FG +
Sbjct: 155 GVNEVKEKFGVF-PTQMTDFLSLVGDTSDNIPGVPGIGVKTAAKLLNTFGAI 205
>TIGR_CMR|CJE_0383 [details] [associations]
symbol:CJE_0383 "DNA polymerase type I" species:195099
"Campylobacter jejuni RM1221" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 RefSeq:YP_178402.1 ProteinModelPortal:Q5HWD3
STRING:Q5HWD3 GeneID:3231145 KEGG:cjr:CJE0383 PATRIC:20042470
BioCyc:CJEJ195099:GJC0-388-MONOMER Uniprot:Q5HWD3
Length = 879
Score = 113 (44.8 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 12 KYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
KYG +KP+Q D ++L GD +DNIPGV+GIG A L+ +FG +
Sbjct: 164 KYG-VKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSI 207
>DICTYBASE|DDB_G0267464 [details] [associations]
symbol:polA "mitochondrial DNA polymerase A"
species:44689 "Dictyostelium discoideum" [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 SMART:SM00279
SMART:SM00475 SMART:SM00482 dictyBase:DDB_G0267464
GenomeReviews:CM000150_GR GO:GO:0003677 GO:GO:0006260
EMBL:AAFI02000003 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 HSSP:P19821 EMBL:AY170439 RefSeq:XP_647557.1
ProteinModelPortal:Q8I7W9 STRING:Q8I7W9 EnsemblProtists:DDB0191131
GeneID:8616365 KEGG:ddi:DDB_G0267464 OMA:TATKWIQ Uniprot:Q8I7W9
Length = 1369
Score = 115 (45.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 12 KYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGMLVFNVECFSEM 66
K+G +P++FV SL+GDK DNIPG+ IG+ A +I KFG L +E ++
Sbjct: 456 KFG-FEPNKFVTFQSLIGDKVDNIPGIPRIGEKTATDIIKKFGNLNSIIENIDQL 509
>TIGR_CMR|ECH_0080 [details] [associations]
symbol:ECH_0080 "DNA polymerase I" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_506910.1 ProteinModelPortal:Q2GI23
STRING:Q2GI23 GeneID:3927608 KEGG:ech:ECH_0080 PATRIC:20575721
BioCyc:ECHA205920:GJNR-80-MONOMER Uniprot:Q2GI23
Length = 944
Score = 113 (44.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
ED K+G + +Q +D +SL GD +DN+PG+ GIG A +L+ FG L
Sbjct: 159 EDVQSKFG-ISSNQLLDFLSLTGDASDNVPGIPGIGVKTAAKLLNDFGSL 207
>UNIPROTKB|P0A550 [details] [associations]
symbol:polA "DNA polymerase I" species:1773 "Mycobacterium
tuberculosis" [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:BX842577 GO:GO:0005622
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 EMBL:L11920 PIR:C70559
RefSeq:NP_216145.1 RefSeq:NP_336121.1 RefSeq:YP_006515018.1
ProteinModelPortal:P0A550 SMR:P0A550 PRIDE:P0A550
EnsemblBacteria:EBMYCT00000000077 EnsemblBacteria:EBMYCT00000072282
GeneID:13316408 GeneID:885074 GeneID:924198 KEGG:mtc:MT1665
KEGG:mtu:Rv1629 KEGG:mtv:RVBD_1629 PATRIC:18125424
TubercuList:Rv1629 HOGENOM:HOG000020997 Uniprot:P0A550
Length = 904
Score = 110 (43.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 1 MASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+ F E KYG L P Q+ D +L GD +DN+PG+ G+G+ A + I ++G L
Sbjct: 171 LTRFTPEAVVEKYG-LTPRQYPDFAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSL 225
>UNIPROTKB|P00582 [details] [associations]
symbol:polA species:83333 "Escherichia coli K-12"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IDA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA;IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA;IMP]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0006261
GO:GO:0005622 SUPFAM:SSF53098 EMBL:L19201 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
EMBL:V00317 EMBL:J01663 EMBL:J01664 PIR:A92360 RefSeq:NP_418300.1
RefSeq:YP_491586.1 PDB:1D8Y PDB:1D9D PDB:1D9F PDB:1DPI PDB:1KFD
PDB:1KFS PDB:1KLN PDB:1KRP PDB:1KSP PDB:1QSL PDB:2KFN PDB:2KFZ
PDB:2KZM PDB:2KZZ PDBsum:1D8Y PDBsum:1D9D PDBsum:1D9F PDBsum:1DPI
PDBsum:1KFD PDBsum:1KFS PDBsum:1KLN PDBsum:1KRP PDBsum:1KSP
PDBsum:1QSL PDBsum:2KFN PDBsum:2KFZ PDBsum:2KZM PDBsum:2KZZ
ProteinModelPortal:P00582 SMR:P00582 DIP:DIP-10524N IntAct:P00582
MINT:MINT-1225247 SWISS-2DPAGE:P00582 PaxDb:P00582 PRIDE:P00582
EnsemblBacteria:EBESCT00000001399 EnsemblBacteria:EBESCT00000014390
GeneID:12933188 GeneID:948356 KEGG:ecj:Y75_p3322 KEGG:eco:b3863
PATRIC:32123225 EchoBASE:EB0739 EcoGene:EG10746
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
BioCyc:EcoCyc:EG10746-MONOMER BioCyc:ECOL316407:JW3835-MONOMER
BioCyc:MetaCyc:EG10746-MONOMER SABIO-RK:P00582 BindingDB:P00582
ChEMBL:CHEMBL4298 DrugBank:DB00548 EvolutionaryTrace:P00582
Genevestigator:P00582 TIGRFAMs:TIGR00593 Uniprot:P00582
Length = 928
Score = 110 (43.8 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 5 GMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
G E+ KYG + P +D ++L+GD +DNIPGV G+G+ A L+ G L
Sbjct: 161 GPEEVVNKYG-VPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGL 211
>UNIPROTKB|Q0C2B4 [details] [associations]
symbol:polA "DNA polymerase I" species:228405 "Hyphomonas
neptunium ATCC 15444" [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_760129.1 ProteinModelPortal:Q0C2B4
STRING:Q0C2B4 GeneID:4289511 KEGG:hne:HNE_1412 PATRIC:32215643
HOGENOM:HOG000020999 BioCyc:HNEP228405:GI69-1446-MONOMER
Uniprot:Q0C2B4
Length = 929
Score = 108 (43.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 5 GMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54
G +D K+G + P VDV SL GD DN+PG GIG A QL+ ++G
Sbjct: 169 GRDDVIEKFG-VGPEGVVDVQSLSGDSVDNVPGAPGIGIKTAAQLLGEYG 217
>UNIPROTKB|Q48PV5 [details] [associations]
symbol:polA "DNA polymerase I" species:264730 "Pseudomonas
syringae pv. phaseolicola 1448A" [GO:0008408 "3'-5' exonuclease
activity" evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_272564.1 ProteinModelPortal:Q48PV5 SMR:Q48PV5
STRING:Q48PV5 GeneID:3558423 KEGG:psp:PSPPH_0259 PATRIC:19969530
Uniprot:Q48PV5
Length = 921
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 12 KYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54
K+G + P +D ++L+GDK DNIPGV G+G+ AV L+ G
Sbjct: 165 KFG-VGPEHIIDYLALMGDKVDNIPGVPGVGEKTAVGLLVGVG 206
>UNIPROTKB|Q9KVN3 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
E K+G + P +D ++L+GDK DNIPGV G+G+ A L+ G L
Sbjct: 163 EGVIEKFG-IPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGL 211
>TIGR_CMR|VC_0108 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
E K+G + P +D ++L+GDK DNIPGV G+G+ A L+ G L
Sbjct: 163 EGVIEKFG-IPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGL 211
>TIGR_CMR|DET_1391 [details] [associations]
symbol:DET_1391 "DNA-directed DNA polymerase I"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR002562
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_182100.1 ProteinModelPortal:Q3Z6P9
STRING:Q3Z6P9 GeneID:3229334 KEGG:det:DET1391 PATRIC:21609809
ProtClustDB:CLSK836946 BioCyc:DETH243164:GJNF-1392-MONOMER
Uniprot:Q3Z6P9
Length = 903
Score = 102 (41.0 bits), Expect = 0.00026, P = 0.00026
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 12 KYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54
KYG L P D +L+GD +DNIPGV GIG A +LI ++G
Sbjct: 172 KYG-LGPEHIADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYG 213
>UNIPROTKB|Q47YA8 [details] [associations]
symbol:xni "Protein Xni" species:167879 "Colwellia
psychrerythraea 34H" [GO:0016895 "exodeoxyribonuclease activity,
producing 5'-phosphomonoesters" evidence=ISS] InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00279 GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 RefSeq:YP_270212.1
ProteinModelPortal:Q47YA8 STRING:Q47YA8 GeneID:3522688
KEGG:cps:CPS_3538 PATRIC:21470009 HOGENOM:HOG000040580 KO:K01146
OMA:AVQGTPC ProtClustDB:PRK09482
BioCyc:CPSY167879:GI48-3566-MONOMER GO:GO:0016895 HAMAP:MF_01192
InterPro:IPR022895 Uniprot:Q47YA8
Length = 290
Score = 95 (38.5 bits), Expect = 0.00031, P = 0.00031
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
E+ + +K SQ +D +L GD + I GV GIG V A +L+ ++G L
Sbjct: 172 EEHVQSKFSVKTSQLIDFWTLTGDNTNKIEGVSGIGQVTAAKLLNQYGSL 221
>TIGR_CMR|CPS_3538 [details] [associations]
symbol:CPS_3538 "exodeoxyribonuclease IX" species:167879
"Colwellia psychrerythraea 34H" [GO:0006308 "DNA catabolic process"
evidence=ISS] [GO:0016895 "exodeoxyribonuclease activity, producing
5'-phosphomonoesters" evidence=ISS] InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00279 GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 RefSeq:YP_270212.1
ProteinModelPortal:Q47YA8 STRING:Q47YA8 GeneID:3522688
KEGG:cps:CPS_3538 PATRIC:21470009 HOGENOM:HOG000040580 KO:K01146
OMA:AVQGTPC ProtClustDB:PRK09482
BioCyc:CPSY167879:GI48-3566-MONOMER GO:GO:0016895 HAMAP:MF_01192
InterPro:IPR022895 Uniprot:Q47YA8
Length = 290
Score = 95 (38.5 bits), Expect = 0.00031, P = 0.00031
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
E+ + +K SQ +D +L GD + I GV GIG V A +L+ ++G L
Sbjct: 172 EEHVQSKFSVKTSQLIDFWTLTGDNTNKIEGVSGIGQVTAAKLLNQYGSL 221
>TIGR_CMR|CPS_4978 [details] [associations]
symbol:CPS_4978 "DNA polymerase I" species:167879
"Colwellia psychrerythraea 34H" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_271617.1 ProteinModelPortal:Q47UA6 SMR:Q47UA6
STRING:Q47UA6 GeneID:3519378 KEGG:cps:CPS_4978 PATRIC:21472749
BioCyc:CPSY167879:GI48-4979-MONOMER Uniprot:Q47UA6
Length = 936
Score = 100 (40.3 bits), Expect = 0.00045, P = 0.00045
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 10 ARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+ K+G ++P Q +D ++L+GDK DNIPGV G AV+ + + G +
Sbjct: 176 SEKFG-VRPDQIIDYLALMGDKVDNIPGVVKCGPKTAVKWLAEHGTM 221
>TIGR_CMR|SO_1549 [details] [associations]
symbol:SO_1549 "exodeoxyribonuclease IX" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006308 "DNA catabolic process" evidence=ISS] [GO:0016895
"exodeoxyribonuclease activity, producing 5'-phosphomonoesters"
evidence=ISS] InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00278 SMART:SM00279 GO:GO:0003677 GO:GO:0006281
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000040580 KO:K01146
ProtClustDB:PRK09482 HAMAP:MF_01192 InterPro:IPR022895
RefSeq:NP_717163.2 HSSP:P19821 ProteinModelPortal:Q8EGP9
GeneID:1169355 KEGG:son:SO_1549 PATRIC:23522738 OMA:YELFRAH
Uniprot:Q8EGP9
Length = 261
Score = 91 (37.1 bits), Expect = 0.00069, P = 0.00069
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 8 DFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+ +K G + SQF+D+++L GD + IPG+ GIG A +L+ F L
Sbjct: 154 ELEQKLG-VDRSQFLDLMALAGDSGNKIPGIPGIGPKSAAELLRTFRTL 201
>TIGR_CMR|SPO_3844 [details] [associations]
symbol:SPO_3844 "DNA polymerase I" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279
SMART:SM00474 SMART:SM00475 SMART:SM00482 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HOGENOM:HOG000020999 RefSeq:YP_169032.1
ProteinModelPortal:Q5LLS7 GeneID:3195865 KEGG:sil:SPO3844
PATRIC:23381191 Uniprot:Q5LLS7
Length = 933
Score = 98 (39.6 bits), Expect = 0.00073, P = 0.00073
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 12 KYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
K+G P + VDV +L GD DN+PG GIG A LI ++G L
Sbjct: 174 KFGVF-PDRVVDVQALAGDSVDNVPGAPGIGVKTAALLINEYGSL 217
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.142 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 66 66 0.00091 102 3 11 22 0.40 28
29 0.48 28
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 438 (47 KB)
Total size of DFA: 74 KB (2062 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 6.86u 0.17s 7.03t Elapsed: 00:00:01
Total cpu time: 6.86u 0.17s 7.03t Elapsed: 00:00:01
Start: Thu May 9 14:08:49 2013 End: Thu May 9 14:08:50 2013